Encephalitozoon cuniculi GB-M1 chromosome VII, complete sequence.
Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon.
Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
Transcriptional signals for accurate microsporidian genome annotation, supporting high quality comparative genomics
Submitted (22-DEC-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (30-AUG-2000) Genoscope -Centre National de Sequencage, 2 rue Gaston Cremieux, CP 5706, 91057 EVRY cedex, FRANCE. (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to AL590447.\nCorresponding author : Equipe de Parasitologie Moleculaire et\nCellulaire, UMR CNRS 6023, Universite Blaise Pascal, 63177 Aubiere\ncedex, France E-mail : Christian.VIVARES@lbp.univ-bpclermont.fr Tel\n: (33) (0)4.73.40.74.57 Fax : (33) (0)4.73.40.74.55 Web :\nhttp://www.protistes.univ-bpclermont.fr/fr/parasito.htm The\nsubmitted sequence encompasses the coding core of the chromosome.\nThe telomeric and subtelomeric sequences are not included in this\nsubmission.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
07_0090, DNA-DIRECTED RNA POLYMERASE III 160 kDa SUBUNIT (LARGEST SUBUNIT, ZN TRANSFERASE), RPC1_yeast, gene found by Glimmer
07_0100, similarity to NGG1-INTERACTING FACTOR 3, NIF3_yeast, gene found by Glimmer
60S acidic ribosomal protein domain-containing protein
07_0110, 60S ACIDIC RIBOSOMAL PROTEIN P2 (A4), RLA4_SCHPO, gene found by Glimmer
07_0130, ANTI-SILENCING PROTEIN 1, ASF1_yeast, gene found by Glimmer, modified ATG by annotation
07_0140, similarity to GCN1-LIKE TRANSLATIONAL ACTIVATOR, YAQ5_SCHPO, gene found by Glimmer
07_0160, similarity to HYPOTHETICAL PROTEINS YDW4_SCHPO and YZR5_CAEEL, gene found by Glimmer
07_0180, ACID PHOSPHATASE PRECURSOR, PPAY_CAEEL, gene found by Glimmer
07_0190, 26S PROTEASOME REGULATORY SUBUNIT 10, PRSX_SPETR, gene found by Glimmer
07_0220, TRANSCRIPTION INITIATION FACTOR TFIIE, ALPHA SUBUNIT, T2EA_HUMAN, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Gln, Anticodon: TTG, Score: 70.59
mitochondrial import translocase subunit TIM22-like protein
07_0240, similarity to TRANSLOCASE TIM22/17 involved in mitochondrial protein import, IM22_SCHPO, gene found by Glimmer
07_0260, some similarity with WD-repeat proteins, gene found by Glimmer
07_0310, similarity to HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YA93_SCHPO, gene found by Glimmer
rRNA (cytosine-C5-)-methyltransferase RCM1
07_0320, NOP2-LIKE NUCLEOLAR PROTEIN, NOP2_yeast, SUN_BACSU,gene found by Glimmer
RING-finger domain-containing ubiquitin ligase
07_0330, putative protein with zinc finger domain, gene found by Glimmer
07_0340, POLYADENYLATE-BINDING PROTEIN 1, PABP_SCHPO, gene found by Glimmer
07_0350, REQUIRED FOR NUCLEAR DIVISION (SPINDLE POLE BODY DUPLICATION) CUT1_SCHPO, ESP1_yeast v25.11, gene found Glimmer
07_0360, SER/THR/TYR PROTEIN KINASE, IPL1_yeast, gene found by Glimmer
07_0380, putative EXONUCLEASE (YG5S_yeast, YSM4_CAEEL) similar to exonuclease GOR_PANTR, gene found by Glimmer
07_0390, RAD18-LIKE RECOMBINATION AND DNA REPAIR PROTEIN, RA18_SCHPO, gene found by Glimmer
07_0410, UBIQUITIN CARBOXYL TERMINAL HYDROLASE, UBPC_HUMAN, gene found by Glimmer
07_0430, BOS1-LIKE VESICULAR TRANSPORT PROTEIN (from the ER to Golgi), BOS1_yeast, gene found by Glimmer
07_0450, similarity to HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YAB9_SCHPO, gene found by Glimmer
07_0460, NUCLEAR PROTEIN OF THE NHP2/RS6 FAMILY, NHPX_yeast, gene found by Glimmer
07_0490, DNA REPLICATION LICENSING FACTOR OF THE MCM FAMILY (MCM7), MCM7_MOUSE, gene found by Glimmer
07_0510, similarity to HYPOTHETICAL PROTEIN YBET_ECOLI, gene found by Glimmer
07_0520, cAMP-DEPENDENT SER/THR PROTEIN KINASE (CATALYTIC SUBUNIT) (ALPHA SUBUNIT), PKX1_HUMAN, gene found by Glimmer
07_0540, putative nucleotide (ATP) binding protein, gene found by Glimmer
07_0560, ABC TRANSPORTER, WHIT_DROME, gene found by Glimmer
07_0590, similarity to HYPOTHETICAL PROTEIN YMJ5_CAEEL, gene found by Glimmer
07_0600, ADRENODOXIN (FERREDOXIN 2FE2S), FER2_RICPR, gene found by Glimmer [Shorter 67 353 99]
07_0610i, RAD50-LIKE DNA REPAIR PROTEIN, RA50_yeast, modified ATG by annotation
07_0660, UBIQUITIN-LIKE PROTEIN, SMT3_SCHPO, gene found by Glimmer
07_0680, CUT3-LIKE CHROMOSOME SEGREGATION PROTEIN (CHROMOSOME ASSEMBLY PROTEIN), CUT3_SCHPO, gene found by Glimmer
07_0700, ENDOPLASMIC RETICULUM TRANSLOCATION PROTEIN SIMILAR TO SEC62, SEC62_yeast, gene found by Glimmer [Bad Olap 80 474 0]
07_0710, unknown, gene found by Glimmer [Shorter 79 474 99]
07_0740, AQUAPORIN-LIKE PROTEIN, (WATER-SPECIFIC CHANNEL)(TRANSMEMBRANE CHANNEL MIP FAMILY), AQPA_RANES, TIPR_ARATH, gene found by Glimmer
07_0750, HISTONE ACETYLTRANSFERASE TYPE B SUBUNIT 2, RB46_MOUSE, gene found by Glimmer
07_0760, DNAJ PROTEIN HOMOLOG 2, MAS5_yeast, gene found by Glimmer
07_0770, INVOLVED IN ER TRANSLOCATION, NPL4_yeast, gene found by Glimmer
07_0780, unclear, putative protein with some similarity to DnaJ family, gene found by Glimmer
07_0800, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, G3P2_BACSU, gene found by Glimmer
07_0820, 60S ACIDIC RIBOSOMAL PROTEIN P0,(10E, A0), ATG initiation ?, RLA0_yeast, gene found by Glimmer
07_0830, HFM1-LIKE ATP-DEPENDENT RNA HELICASE (SKI2 subfamily), HFM1_yeast, gene found by Glimmer
DNA-directed RNA polymerase subunit RPB8
07_0840, DNA-DIRECTED RNA POLYMERASE I, II and III, 17kDa SUBUNIT, RPB8_CAEEL, gene found by Glimmer
07_0860, CULLIN-LIKE PROTEIN, CUL2_CAEEL, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Leu, Anticodon: CAG, Score: 60.23
07_0890, similarity to HYPOTHETICAL TRANSMEMBRANE PROTEINS YHG4_yeast, YM8K_yeast, gene found by Glimmer
07_0900, similarity to HYPOTHETICAL PROTEINS (UPF 0017 family) YM60_yeast and HPS1_HUMAN, gene found by Glimmer
07_0930, with similarity to 60S RIBOSOMAL PROTEIN L24, RL24_KLULA, gene found by Glimmer
07_0950, unclear, weak similarity to replication factor A protein 3, RFA3_SCHPO, gene found by Glimmer
DNA-directed RNA polymerase subunit Rpb5
07_0960, DNA-DIRECTED RNA POLYMERASE I, II AND III, 27kDa POLYPEPTIDE, RPB5_HUMAN, RPB5_yeast, gene found by Glimmer
07_0980, similarity to HYPOTHETICAL PROTEINS YIK3_yeast, YIK5_CAEEL, gene found by Glimmer
07_1005, 60S RIBOSOMAL PROTEIN L37A (L43), R37A_PLAFA
07_1010, STRUCTURE-SPECIFIC RECOGNITION PROTEIN, SSRP_MOUSE, gene found by Glimmer
07_1020, putative WD-repeat protein, gene found by Glimmer
proteasome core particle subunit alpha 4
07_1040, 26S PROTEASOME SUBUNIT ALPHA-4 (TYPE 7-2, D2), PRC6_LYCES, gene found by Glimmer
07_1050, similarity to HYPOTHETICAL PROTEIN YB04_AERPE (UPF0119 FAMILY), found by Glimmer
07_1060, ATP-DEPENDENT RNA HELICASE (DEAD BOX FAMILY), YA88_SCHPO, ROK1_yeast gene found by Glimmer
07_1070, similarity to HYPOTHETICAL PROTEIN YXIF_BACSU, gene found by Glimmer
07_1100, GLUCOSE TRANSPORTER TYPE 1, GTR1_PIG gene found by Glimmer
07_1130, ATP-DEPENDENT DNA HELICASE, HUS2_SCHPO, SGS1_yeast, gene found by Glimmer
SF3a splicing factor complex subunit PRP9
07_1150, unknown, gene found by Glimmer [Delay by 21 128 50 0]
07_1160, unknown, gene found by Glimmer [Delay by 462 131 488 0]
07_1170, similarity to HYPOTHETICAL PROTEINS (UPF0034=NIFR3/SMM1 family) YJBN_ECOLI and Y926_YEAST, gene found by Glimmer
07_1190, TUBULIN ALPHA CHAIN, TBA_HAECO, gene found by Glimmer
07_1210, unknown, gene found by Glimmer [Shorter 137 162 99]
formin homology 2 domain-containing protein
07_1220, unclear, with some similarity to formin, FORM_CHICK, gene found by Glimmer [Bad Olap 136 162 0]
07_1230, CALTRACTIN-LIKE PROTEIN (20KDA CALCIUM-BINDING PROTEIN, CENTRIN), CATR_CHLRE, gene found by Glimmer
07_1260, GUANOSINE DIPHOSPHATASE (Golgi), GDA1_yeast, gene found by Glimmer
07_1270, MRK1-LIKE SER/THR PROTEIN KINASE, MRK1_yeast, gene found by Glimmer
07_1280, GLUCOSAMINE FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, GFA2_HUMAN, gene found by Glimmer
07_1320, similarity to HYPOTHETICAL TRANSMEMBRANE PROTEIN YAGE_SCHPO, gene found by Glimmer
eukaryotic translation initiation factor 5
07_1330, EUKARYOTIC TRANSLATION INITIATION FACTOR 5 (EIF5)(EIF2B/EIF5 FAMILY), IF5_SCHPO, gene found by Glimmer
07_1340, rRNA METHYL-TRANSFERASE, SPB1_yeast, gene found by Glimmer
H(+)-transporting V0 sector ATPase subunit c
07_1350, VACUOLAR ATP SYNTHASE 16kDa PROTEOLIPID SUBUNIT, VATL_HUMAN, gene found by Glimmer
ubiquitin-60S ribosomal protein L40 fusion protein
07_1380, UBIQUITIN/ L40 RIBOSOMAL PROTEIN FUSION (possible gene for 60S ribosomal protein L40), gene found by Glimmer
07_1390, unknown, gene found by Glimmer [Shorter 158 95 99]
07_1410, 60S RIBOSOMAL PROTEIN L17, RL17_RAT, v26. 11, gene found by Glimmer, [Shorter 158 498 99]
07_1420, 20S PROTEASOME ALPHA-TYPE SUBUNIT, COMPONENT C5, PRC5_RAT, gene found by Glimmer
07_1440, similarity to HYPOTHETICAL PROTEINS C215_HUMAN and Y18D1OA.1_CAEEL, gene found by Glimmer
07_1460, 60S RIBOSOMAL PROTEIN L37, RL37_SCHMA
tRNA found by tRNAscan-SE, tRNA type: Arg, Anticodon: TCG, Score: 61.45
tRNA found by tRNAscan-SE, tRNA type: Lys, Anticodon: TTT, Score: 68.11
07_1500, CATION-TRANSPORTING ATPase, ATC9_yeast, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Ala, Anticodon: AGC, Score: 72.45
07_1530, unclear (some similarity to ribosomal protein L5), gene found by Glimmer
07_1570, THREONYL tRNA SYNTHETASE, SYTC_yeas, gene found by Glimmer
07_1600, unknown (threonyl-tRNA synthetase fragment), gene found by Glimmer
07_1610, similarity to HYPOTHETICAL PROTEIN (NIFR3/SMM1 family) YM10_yeast, gene found by Glimmer
07_1620, BOS1-LIKE VESICULAR TRANSPORT PROTEIN (from the ER to Golgi), BOS1_yeast, gene found by Glimmer
decapping enzyme complex catalytic subunit
07_1630, putative protein with Mut T domain (Nudix hydrolase family), gene found by Glimmer [Delay by 162 181 118 0]
07_1640, 26S PROTEASOME REGULATORY SUBUNIT 4, PRS4_CAEEL, gene found by Glimmer
07_1650, similarity to RIBONUCLEASE P SUBUNIT, RP29_HUMAN, gene found by Glimmer
07_1660, PHENYLALANYL tRNA SYNTHETASE BETA SUBUNIT, SYFB_MOUSE, gene found by Glimmer
peptide alpha-N-acetyltransferase complex B subunit NAT3
07_1680, N-TERMINAL ACYLTRANSFERASE COMPLEX (ARD) SUBUNIT, ARDH_LEIDO, gene found by Glimmer
07_1690, CHROMATIN STRUCTURE MODULATOR, SPT6_yeast, EMBR_CAEE, gene found by Glimmer
07_1700, 40S RIBOSOMAL PROTEIN S2, RS2_MOUSE, gene found by Glimmer
07_1720, putative RNA-binding protein, gene found by Glimmer
07_1730, unclear, MADS domain, gene found by Glimmer
07_1740, unclear, MADS domain, gene found by Glimmer
DNA-directed RNA polymerase II subunit RPB7
07_1750, DNA-DIRECTED RNA POLYMERASE II 19kDa SUBUNIT, RPB7_HUMAN, gene found by Glimmer
07_1760, GLUCOSAMINE PHOSPHATE N-ACETYLTRANSFERASE, GNA1_CAEEL, gene found by Glimmer
07_1780, unknown v26.11, gene found by Glimmer
07_1790, similarity to HYPOTHETICAL PROTEIN YEY6_yeast, gene found by Glimmer
07_1820, weak similarity to 60S ribosomal protein L35, gene found by Glimmer
07_1830, putative U6 snRNA-ASSOCIATED SM-LIKE PROTEIN (snRNP-LIKE PROTEIN), RUXX_THEA
07_1840, some similarity to transcription factors of the MAF subfamily, MAF1_YEAST, gene found by Glimmer, modified ATG by annotation