Encephalitozoon cuniculi GB-M1 chromosome VI, complete sequence.
Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon.
Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
Transcriptional signals for accurate microsporidian genome annotation, supporting high quality comparative genomics
Submitted (22-DEC-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (30-AUG-2000) Genoscope -Centre National de Sequencage, 2 rue Gaston Cremieux, CP 5706, 91057 EVRY cedex, FRANCE. (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to AL590446.\nCorresponding author : Equipe de Parasitologie Moleculaire et\nCellulaire, UMR CNRS 6023, Universite Blaise Pascal, 63177 Aubiere\ncedex, France E-mail : Christian.VIVARES@lbp.univ-bpclermont.fr Tel\n: (33) (0)4.73.40.74.57 Fax : (33) (0)4.73.40.74.55 Web :\nhttp://www.protistes.univ-bpclermont.fr/fr/parasito.htm The\nsubmitted sequence encompasses the coding core of the chromosome.\nThe telomeric and subtelomeric sequences are not included in this\nsubmission.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
06_0060, unknown, gene found by Glimmer [Shorter 7 275 99]
06_0070, unknown, gene found by Glimmer [Bad Olap 6 275 0]
06_0120, TRANSKETOLASE, TKT1_yeast, gene found by Glimmer
06_0150, COMPONENT OF THE 20S CYCLOSOME/ANAPHASE-PROMOTING COMPLEX, CUT9_SCHPO, gene found by Glimmer
06_0190, VACUOLAR ATP SYNTHASE 16kDa PROTEOLIPID SUBUNIT, VATL_SCHPO, gene found by Glimmer
06_0200, DNA REPAIR HELICASE OF THE RAD3/XPD SUBFAMILY, RAD3_yeast, gene found by Glimmer
translation initiation factor eIF2 subunit beta
06_0210, TRANSLATION INITIATION FACTOR IF2 BETA SUBUNIT, IF2B_yeast, gene found by Glimmer
06_0220, TUBULIN-FOLDING COFACTOR D, ALP1_yeast, gene found by Glimmer [Bad Olap 24 109 0]
06_0230i, putative NUCLEOLAR PROTEIN (TRANSFORMER 2 - LIKE PROTEIN),TR2H_HUMAN, gene found by Glimmer [Shorter 23 109 99], modified ATG by annotation
06_0240, POLAR TUBE PROTEIN PTP2, Encephalitozoon cuniculi, gene found by Glimmer
06_0250, POLAR TUBE PROTEIN PTP1, Encephalitozoon cuniculi, PTP_ENCCU, E. cuniculi gene DNA cross-ref : AJ005666, gene found by Glimmer
06_0260, TRANSCRIPTION FACTOR OF THE E2F/DP FAMILY (DIMERIZATION PARTNER), TDP_DROME, gene found by Glimmer
06_0280, LEUCYL tRNA SYNTHETASE, SYLC_SCHPO, gene found by Glimmer
06_0310, QUEUINE tRNA RIBOSYLTRANSFERASE, TGT_DROME, gene found by Glimmer
DNA-directed RNA polymerase core subunit RPB10
06_0320, DNA-DIRECTED RNA POLYMERASE II 8.2kDa POLYPEPTIDE, RPBX_SCHPO, created by annotation
06_0330, PEPTIDYL PROLYL CIS TRANS ISOMERASE (NIMA-INTERACTING), PIN1_HUMAN, gene found by Glimmer
06_0340, DNA REPLICATION LICENSING FACTOR OF THE MCM FAMILY MCM5, MCM5_yeast, gene found by Glimmer
transcription initiation factor IIE subunit beta
06_0350, TRANSCRIPTION INITIATION FACTOR TFIIE BETA SUBUNIT, T2EB_HUMAN, gene found by Glimmer [Delay by 117 33 135 0]
06_0360, REPLICATION FACTOR A PROTEIN 2 (32KDA SUBUNIT), RFA2_HUMAN, second ATG possible on the basis of homologies with the proteins RFA2_SCHPO et RFA2_YEAST, gene found by Glimmer [Shorter 36 311 62]
06_0370i, similarity to HYPOTHETICAL PROTEINS YC47_SCHPO, YL09_YEAST, gene found by Glimmer [Bad Olap 35 311 37], modified ATG by annotation
06_0380, ZINC METALLOPEPTIDASE, YE94_SCHPO, gene found by Glimmer
06_0390, similarity to HYPOTHETICAL PROTEIN OF THE RNASE PH FAMILY YBX3_SCHPO, gene found by Glimmer
06_0400, Similarity to HYPOTHETICAL PROTEIN (CAT domain of protein kinases) Y665_ARCFU, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Gly, Anticodon: GCC, Score: 61.05
06_0430, DEOXYURIDINE 5' TRIPHOSPHATE NUCLEOTIDOHYDROLASE, DUT_yeast, gene found by Glimmer
06_0440, similarity to HYPOTHETICAL PROTEINS YATA_SCHPO, YK59_yeast, gene found by Glimmer [Bad Olap 44 317 0], overlapping CDS in reverse orientation removed by annotation
06_0460, N-TERMINAL ACYLTRANSFERASE COMPLEX SUBUNIT ARD1, ARDH_HUMAN, gene found by Glimmer
06_0470, NUCLEAR PORE COMPLEX PROTEIN NUP155, N155_RAT, gene found by Glimmer
06_0490, MEVALONATE PYROPHOSPHATE DECARBOXYLASE, ER19_RAT, ER19_YEAST, gene found by Glimmer
06_0500, putative zinc finger protein (homeobox domain), gene found by Glimmer
06_0510, T-COMPLEX PROTEIN 1 ZETA SUBUNIT, TCPZ_HUMAN, gene found by Glimmer
06_0530, similarity to HYPOTHETICAL PROTEINS OF THE TUB FAMILY TUL3_HUMAN, YQQ4_CAEEL, gene found by Glimmer
06_0540, putative SKT5-like protein, INTERACTS WITH SEPTINS, YBEQ_ECOLI, SKT5_yeast, gene found by Glimmer
DNA-directed RNA polymerase II core subunit RPB3
06_0600, DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN (33KDA), RPB3_SCHPO, gene found by Glimmer
S-adenosylmethionine-dependent methyltransferase
06_0610, N6 ADENINE SPECIFIC DNA METHYLASE (METHYLTRANSFERASE SUPERFAMILY), N6M1_HUMAN, gene found by Glimmer
06_0620, HISTIDYL tRNA SYNTHETASE, SYH_BORBU, gene found by Glimmer
06_0650, some similarity to adenylate kinase (fragment), ADK1_yeast, gene found by Glimmer
06_0670, protein kinase domain, gene found by Glimmer
06_0720, similarity to HYPOTHETICAL PROTEIN YIP3_yeast, gene found by Glimmer
06_0730, RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN, RIR2_BRARE, gene found by Glimmer
06_0740, MEI2-RELATED PROTEIN (involved in meiosis), MES1_SCHPO
06_0750, ZINC PROTEASE (INSULINASE FAMILY), IDE_DROME, gene found by Glimmer
06_0770, BETA-ADAPTIN (CLATHRIN ASSEMBLY PROTEIN LARGE BETA CHAIN), ADB6_yeast, gene found by Glimmer
06_0790, ASPARTYL tRNA SYNTHETASE, SYD_RAT, gene found by Glimmer
06_0820, BELONGS TO THE SNF2/RAD54 HELICASE FAMILY, YA83_SCHPO, ERC6_HUMAN, RA54_YEAST, gene found by Glimmer
RNA polymerase II subunit A C-terminal domain phosphatase
06_0840, SSU72 PROTEIN HOMOLOG (RELATED TO TFIIB), SS72_yeast, gene found by Glimmer
06_0850, unknown, gene found by Glimmer, [Delay by 180 90 170 0]
06_0870, SEC63-LIKE PROTEIN FOR PREPROTEIN TRANSLOCATION, NPL1_yeast, gene found by Glimmer
06_0880, CULLIN HOMOLOG (CDC53 family), CUL6_CAEEL, gene found by Glimmer
06_0900i, 60S RIBOSOMAL PROTEIN L5, RL5_CAEEL, gene found by Glimmer, modified ATG by annotation
tRNA found by tRNAscan-SE, tRNA type: Trp, Anticodon: CCA, Score: 63.03
06_0910, UBIQUITIN CARBOXYL-TERMINAL HYDROLASE, UBPB_HUMAN, gene found by Glimmer
06_0920, PRE-mRNA SPLICING HELICASE, BRR2_yeast, gene found by Glimmer
06_0930, PHOSPHOLIPID TRANSPORTING ATPase, AT1A_BOVIN, gene found by Glimmer
06_0940, similarity to 3-KETOACYL COA THIOLASE, THIK_RAT, gene found by Glimmer
06_0950, similarity to DOLICHYL-PHOSPHATE MANNOSE PROTEIN MANNOSYLTRANSFERASE, PMT1_CANAL,gene found by Glimmer
06_0960, putative protein with some similarity to the class 3 of adenyl cyclases Y891_MYCTU, gene found by Glimmer
chaperonin-containing T-complex subunit CCT5
06_0990, T COMPLEX PROTEIN 1 EPSILON SUBUNIT, TCPE_HUMAN, gene found by Glimmer
06_1000, putative zinc finger protein, gene found by Glimmer [Shorter 107 237 99]
06_1010, unknown, gene found by Glimmer [Bad Olap 106 237 0]
06_1020, MYB-LIKE TRANSCRIPTION FACTOR, MYBH_DICDP, gene found by Glimmer
06_1030, RNA 3'TERMINAL PHOSPHATE CYCLASE, RTC1_SCHPO, gene found by Glimmer
06_1040, D-RIBULOSE 5 PHOSPHATE 3 EPIMERASE, RPE_METJA, gene found by Glimmer
U2-type spliceosomal complex subunit CWC24
06_1060, putative zinc finger protein, YL23_yeast, gene found by Glimmer
06_1080i, 60S RIBOSOMAL PROTEIN L19, RL19_MOUSE, gene found by Glimmer, modified ATG by annotation
06_1090, PROTEIN OF THE ERV1/ALR FAMILY (mitochondrial 14kDa protein), ALR_RAT, ERV1_YEAST, gene found by Glimmer [Shorter 117 52 99]
06_1100i, TRANSCRIPTION INITIATION FACTOR TFIIB HOMOLOG, TF2B_XENLA, gene found by Glimmer [Bad Olap 116 52 0], modified ATG by annotation
06_1110, 40S RIBOSOMAL PROTEIN S18, RS18_HUMAN, gene found by Glimmer
06_1120, 60S RIBOSOMAL PROTEIN L36, R36A_yeast, gene found by Glimmer [Delay by 390 120 378 0]
06_1140, U6-snRNA ASSOCIATED SMALL NUCLEAR RIBONUCLEOPROTEIN (SM-LIKE RNP), LSM6_HUMAN
06_1170, unknown, gene found by Glimmer [Delay by 102 122 109 0]
GTP-dependent nucleic acid-binding protein EngD
06_1190, putative GTP-BINDING PROTEIN, YCHF_CAEEL, YBN5_YEAST, gene found by Glimmer
06_1230, similarity to HYPOTHETICAL PROTEIN YO7T_yeast, gene found by Glimmer
06_1250, ATP-DEPENDENT RNA HELICASE (DEAD BOX FAMILY), YA47_SCHPO, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Arg, Anticodon: ACG, Score: 69.70
06_1260, weak similarity to HMG, gene found by Glimmer
HMG domain-containing chromatin-associated protein
06_1270, HIGH MOBILITY GROUP PROTEIN, HMG1 HOMOLOG, HMG1_CHICK, gene found by Glimmer
06_1290, similarity to HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YMD8_yeast, gene found by Glimmer
U2 snRNA, 5' region similar to Vairimorpha U2 snRNA (BlastN homology), 3' region predicted on the basis of ARN size of 200pb
06_1300, similarity to HYPOTHETICAL PROTEIN YLB2_CAEEL, YJ42_YEAST, gene found by Glimmer
06_1360, CLASS II (DNA LYASE) APURINIC APYRIMIDIC ENDONUCLEASE, APE1_HUMAN, gene found by Glimmer
06_1380, SOMA FERRITIN, FRIS_LYMST, gene found by Glimmer
06_1410, similarity to HYPOTHETICAL PROTEIN YJH2_yeast, gene found by Glimmer
SPX domain-containing vacuolar polyphosphate accumulation protein
06_1420i, similarity to HYPOTHETICAL PROTEIN YJB2_yeast (similarity to mammalian microsomal signal peptidase subunit) = putative POLYPHOSPHATE SYNTHETASE VTC4, gene found by Glimmer, modified ATG by annotation
06_1430, similarity to CELL DIVISION CONTROL PROTEIN CDC23 (required for chromosome segregation), CC23_yeast, gene found by Glimmer [Bad Olap 153 950 0], modified ATG by annotation
06_1440, TRANSLATION ELONGATION FACTOR 1-ALPHA, EF1A_ENTHI, gene found by Glimmer [Shorter 152 950 99]
06_1445, 40S RIBOSOMAL PROTEIN S26, RS26_NEUCR
06_1450, CDC50-LIKE PROTEIN, YCY4_yeast gene found by Glimmer
06_1460, putative VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN, YAB3_SCHPO, gene found by Glimmer
06_1480, METHIONINE PERMEASE (AMINOACID PERMEASE FAMILY), MUP1_YEAST, YHFM_ECOLI, gene found by Glimmer
06_1490, similarity to HYPOTHETICAL PROTEIN YJ40_yeast, gene found by Glimmer
06_1500, similarity to HYPOTHETICAL INTEGRAL MEMBRANE PROTEINS YA85_MYCTU, Y117 BORBU, gene found by Glimmer
06_1520, TOPOISOMERASE 1, TRF5_yeast, gene found by Glimmer
06_1530, NUCLEOSIDE DIPHOSPHATASE KINASE A, NDKA_FLABI, gene found by Glimmer
06_1550, mRNA ASSOCIATED PROTEIN OF THE RAE1 FAMILY, RAE1_SCHPO, YET7_YEAST, gene found by Glimmer
06_1570, ER LUMEN PROTEIN RETAINING RECEPTOR (KDEL RECEPTOR 2), ERD2_DROME, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Gln, Anticodon: CTG, Score: 64.92
06_1580, SIGNAL PEPTIDASE LIKE PROTEIN, TPL_TREPA, gene found by Glimmer
06_1630, unknown, gene found by Glimmer, [Delay by 228 173 109 47]
06_1660, unknown, gene found by Glimmer [Shadowed by 175]