Encephalitozoon cuniculi GB-M1 chromosome V, complete sequence.
Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon.
Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
Transcriptional signals for accurate microsporidian genome annotation, supporting high quality comparative genomics
Submitted (22-DEC-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (30-AUG-2000) Genoscope -Centre National de Sequencage, 2 rue Gaston Cremieux, CP 5706, 91057 EVRY cedex, FRANCE. (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to AL590445.\nCorresponding author : Equipe de Parasitologie Moleculaire et\nCellulaire, UMR CNRS 6023, Universite Blaise Pascal, 63177 Aubiere\ncedex, France E-mail : Christian.VIVARES@lbp.univ-bpclermont.fr Tel\n: (33) (0)4.73.40.74.57 Fax : (33) (0)4.73.40.74.55 Web :\nhttp://www.protistes.univ-bpclermont.fr/fr/parasito.htm The\nsubmitted sequence encompasses the coding core of the chromosome.\nThe telomeric and subtelomeric sequences are not included in this\nsubmission.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
05_0060, KINESIN-LIKE PROTEIN, KIF4_MOUSE, gene found by Glimmer
05_0070, similarity to HYPOTHETICAL TRANSMEMBRANE PROTEIN YMF9_YEAST, gene found by Glimmer
05_0090, ADP RIBOSYLATION FACTOR (ARF) - LIKE GTP BINDING PROTEIN, SAR1_TRIRI, gene found by Glimmer
05_0160, putative AMINOACID TRANSPORTER, YEU9_YEAST, gene found by Glimmer
05_0190, WD-REPEAT PROTEIN SIMILAR TO PERIODIC TRYPTOPHAN PROTEIN 2, PWP2_YEAST, gene found by Glimmer
05_0220, putative WD-repeat protein, gene found by Glimmer
05_0240, NADPH CYTOCHROME P450 REDUCTASE, NCPR_RABIT, gene found by Glimmer
05_0250, 40S RIBOSOMAL PROTEIN S3A (LYSIN-RICH KRP-A) (S1 in yeast), RS3A_ORYSA, gene found by Glimmer
05_0260, PHOSPHOMANNOMUTASE, PMM_CANAL, gene found by Glimmer
05_0270, GLYCEROL 3-PHOSPHATE DEHYDROGENASE, GPDA_FUGRU, gene found by Glimmer
DNA-directed RNA polymerase II core subunit RPB11
05_0275, DNA-DIRECTED RNA POLYMERASE II, 14.1KDA POLYPEPTIDE, RPBY_SCHPO
deoxyuridine 5'triphosphate nucleotidohydrolase
05_0280, DEOXYURIDINE 5'TRIPHOSPHATE NUCLEOTIDOHYDROLASE, DUT_CHVP1, gene found by Glimmer
05_0290, 26S PROTEASOME BETA-TYPE SUBUNIT, PRCB_MOUSE, gene found by Glimmer
05_0300, DNA MISMATCH REPAIR PROTEIN (MUTL/HEXB FAMILY), MLH1_HUMAN, gene found by Glimmer
05_0310, ACETYLCOENZYME A SYNTHETASE, ACS1_yeast, gene found by Glimmer
05_0320, PHOSPHOGLYCERATE KINASE, PGK_KLULA, gene found by Glimmer
05_0350, TRANSCRIPTION FACTOR OF MYB-TYPE, BAS1_yeast, gene found by Glimmer
05_0360, PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1, ERF1_XENLA, gene found by Glimmer
05_0370, HISTONE-BINDING PROTEIN N1/N2, HIBN_XENLA, gene found by Glimmer [Shadowed by 37]
05_0390, CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) 100kDa SUBUNIT, CPSB_BOVIN, gene found by Glimmer
05_0400, ACTIN-RELATED PROTEIN, ARP5_yeast, gene found by Glimmer
05_0410i, DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN (GTP1/OBG FAMILY), DRG1_XENLA, gene found by Glimmer [Bad Olap 34 255 0], modified ATG by annotation
05_0420, unknown, gene found by Glimmer [Shorter 33 255 99]
05_0440, NUCLEAR SER/THR PROTEIN PHOSPHATASE PP1-1 GAMMA CATALYTIC SUBUNIT, PPP5_HUMAN, gene found by Glimmer
05_0450, CCAAT BOX BINDING FACTOR, HAP5_yeast, gene found by Glimmer
05_0495, SYNAPTOBREVIN-RELATED PROTEIN, SNC2_yeast
05_0500, TRANSCRIPTION INITIATION FACTOR TFIII B SUBUNIT (70kDa), TF3B_yeast, gene found by Glimmer
05_0540, similarity to HYPOTHETICAL PROTEIN OF THE PI3/PI4 KINASE FAMILY (largest E. cuniculi CDS), YAMB_SCHPO, gene found by Glimmer
05_0580, putative AMINOACID TRANSPORTER, YEU9_yeast, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Leu, Anticodon: TAA, Score: 64.19
ribosomal protein L1 domain-containing protein
05_0600, 60S RIBOSOMAL PROTEIN L10A (L1 in yeast), R10A_RAT, gene found by Glimmer
05_0610, TRANSCRIPTIONAL ACTIVATOR, BTE1_HUMAN, gene found by Glimmer
05_0620, RAN SPECIFIC GTPASE-ACTIVATING PROTEIN, RAN1_SCHPO, gene found by Glimmer
05_0630, SER/THR PROTEIN KINASE, PKPA_PHYBL, gene found by Glimmer
05_0650, GLUCOSE 6-PHOSPHATE ISOMERASE, G6PI_PIG, gene found by Glimmer
05_0670, 40S RIBOSOMAL PROTEIN S6, RS6_KLULA, gene found by Glimmer
05_0680, similarity to HYPOTHETICAL PROTEIN OF THE FAMILY OF PSEUDOURIDINE SYNTHASES YD36_YEAST, gene found by Glimmer
05_0690, similarity to HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YJJ1_yeast, gene found by Glimmer
05_0710, LRG1-LIKE NUCLEAR PROTEIN, RG1_yeast, gene found by Glimmer
05_0720, SPLICING FACTOR U2AF 59kDa SUBUNIT (U2 snRNP AUXILIARY FACTOR LARGE SUBUNIT), U2AF_MOUSE, gene found by Glimmer
05_0730, SERINE PALMITOYL TRANSFERASE SUBUNIT 2, LCB2_HUMAN, gene found by Glimmer
05_0740, GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT 2, GBB2_MOUSE, gene found by Glimmer
05_0750, Ca binding domain, gene found by Glimmer
05_0780, DNA REPLICATION LICENSING FACTOR OF THE MCM FAMILY (MCM6), MCM6_MOUSE, gene found by Glimmer
05_0800, similarity to HYPOTHETICAL GTP-BINDING PROTEINS OF THE GTPI/OBG FAMILY, FEOB_METJA, YRB1_HALCU, gene found by Glimmer
protein phosphatase 2A regulatory subunit CDC55
05_0810, SER/THR PROTEIN PHOSPHATASE PP2-A REGULATORY SUBUNIT B, 2ABD_RAT, gene found by Glimmer
05_0820, SYNTAXIN HOMOLOG, STX5_HUMAN, gene found by Glimmer
05_0840, SORTING NEXIN GRD19 HOMOLOG (Golgi retention), SNX3_yeast, gene found by Glimmer
05_0860, 6-PHOSPHOGLUCONATE DEHYDROGENASE, 6PGD_SALTY, gene found by Glimmer
05_0870, NUCLEOTIDE TRIPHOSPHOSPHATASE OF THE HAM1 FAMILY, NTPA_METJA, HAM1_yeast, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Thr, Anticodon: AGT, Score: 70.94
05_0885, PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT (ER translocation complex), S61G_yeast
05_0890, similarity to HYPOTHETICAL PROTEIN YGZ7_YEAST, gene found by Glimmer
05_0900, 60S RIBOSOMAL PROTEIN L21, RL21_CAEEL, gene found by Glimmer
05_0910i, SMALL NUCLEAR RIBONUCLEOPROTEIN G (U1/U2 snRNP G), RUXG_SCHPO, gene found by Glimmer, modified ATG by annotation
05_0920, 40S RIBOSOMAL PROTEIN S9, RS9_CAEEL, gene found by Glimmer
05_0930, PHOSPHATIDYLINOSITOL TRANSFER PROTEIN, PPI2_MOUSE, gene found by Glimmer
05_0940, putative RNA HELICASE OF THE SKI2 SUBFAMILY, YP93_CAEEL, gene found by Glimmer
18S rRNA (guanine1575-N7)-methyltransferase
05_0950, putative METHYLTRANSFERASE, YAU6_SCHPO, gene found by Glimmer
05_0990, DNA-DIRECTED DNA POLYMERASE ALPHA, CATALYTIC SUBUNIT (SUBUNIT A), DPOA_SCHPO, gene found by Glimmer
05_1010, BETA-TRANSDUCIN REPEAT CONTAINING PROTEIN (guanine nucleotide-binding protein), TRCB_XENLA, gene found by Glimmer
05_1020, CENTROMERE/MICROTUBULE BINDING PROTEIN, CBF5_SCHPO, gene found by Glimmer
05_1030, DNA POLYMERASE DELTA AUXILIARY PROTEIN (PROLIFERATING CELL NUCLEOLAR ANTIGEN) (PCNA), PCNA_BRANR, gene found by Glimmer
05_1060, DNA-DIRECTED RNA POLYMERASE II 16kDa POLYPEPTIDE, RPB4_HUMAN, gene found by Glimmer
05_1070, similarity to HYPOTHETICAL PROTEINS OF THE RIO1 FAMILY RIO1_YEAST, gene found by Glimmer
05_1110, similarity to HYPOTHETICAL ZINC FINGER PROTEINS YDRD_SCHPO, YKD4_yeast, gene found by Glimmer
05_1120i, TYROSYL tRNA SYNTHETASE, SYY_HUMAN, SYY_SCHPO, gene found by Glimmer, modified ATG by annotation, Dieter Soell remark
05_1130, similarity to HYPOTHETICAL PROTEIN YM14_CAEEL, gene found by Glimmer
transitional endoplasmic reticulum ATPase
05_1140, TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPase), YB56_METJA, TERA_MOUSE, gene found by Glimmer
05_1170, similarity to HYPOTHETICAL PROTEIN YGX4_yeast, gene found by Glimmer
05_1180, similarity to HYPOTHETICAL TRANSMEMBRANE PROTEIN YSV4_CAEEL, gene found by Glimmer
05_1190, BELONGS TO THE ABC TRANSPORTER SUPERFAMILY, GCN20 HOMOLOG, GC20_yeast, gene found by Glimmer
05_1210, DNA POLYMERASE ALPHA/PRIMASE LARGE SUBUNIT, PRI2_HUMAN, gene found by Glimmer
05_1230, putative NUCLEAR PROTEIN OF THE G10 FAMILY, G10_CAEEL, gene found by Glimmer [Shorter 136 147 99]
05_1240, GAMMA GLUTAMYL TRANSPEPTIDASE, GGT_PIG, gene found by Glimmer [Bad Olap 135 147 0]
05_1250, CDP-DIACYLGLYCEROL SYNTHASE, CDSI_yeast, E. cuniculi gene DNA cross-ref : AJ310088, gene found by Glimmer
05_1270, ATP-DEPENDENT RNA HELICASE (PRE-mRNA SPLICING), DBP1_yeast, gene found by Glimmer
05_1280, DOUBLE-STRAND BREAK DNA REPAIR PROTEIN (RAD32 HOMOLOG), RA32_SCHPO, gene found by Glimmer
05_1310, U6 snRNA-ASSOCIATED SMALL RIBONUCLEOPROTEIN (Sm-LIKE PROTEIN), LSM8_HUMAN, YJM4_yeast, gene found by Glimmer
U3 small nucleolar ribonucleoprotein protein IMP3
05_1320, U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN (U3 snoRNP, 18S rRNA production), IMP3_yeast, gene found by Glimmer
proteasome regulatory particle lid subunit RPN3
05_1340, 26S PROTEASOME ALPHA-TYPE SUBUNIT C9, PRC9_yeast, gene found by Glimmer
05_1350, PSEUDOURIDINE SYNTHASE B (PSEUDOURIDINE SYNTHASE 2), TRUB_METJA, gene found by Glimmer
05_1360, TRANSLATION INITIATION FACTOR E2B GAMMA SUBUNIT, E2BG_CAEEL, gene found by Glimmer
05_1370, ZINC METALLOPROTEASE, ST24_yeast, gene found by Glimmer
05_1380, similarity to HYPOTHETICAL PROTEIN YD98_yeast, gene found by Glimmer
proteasome core particle subunit alpha 5
05_1400, 26S PROTEASOME ZETA CHAIN, PRCZ_DROME, gene found by Glimmer
05_1440, ARGININE/SERINE RICH PRE-mRNA SPLICING FACTOR, SFR4_HUMAN, gene found by Glimmer
05_1480, unknown, gene found by Glimmer [Delay by 177 159 179 0]
05_1490, 60S RIBOSOMAL PROTEIN L30, RL30_MAIZE, gene found by Glimmer
05_1500, similarity to HYPOTHETICAL WD-REPEAT PROTEIN YER2_yeast, gene found by Glimmer
05_1510, CASEIN KINASE II ALPHA CHAIN, gene found by Glimmer
05_1520, ACYLCOENZYME A THIOESTERASE II, TESB_ECOLI, gene found by Glimmer
05_1530, DNA REPLICATION FACTOR C SUBUNIT (ACTIVATOR 1), RFC1_yeast, gene found by Glimmer
05_1540, 26S PROTEASOME REGULATORY SUBUNIT 3, PSD3_HUMAN, gene found by Glimmer
05_1560, unknown, gene found by Glimmer [Shorter 170 318 99]
05_1570, unknown, gene found by Glimmer [Bad Olap 168 318 0] [Bad Olap 171 413 0]
05_1580, unknown, gene found by Glimmer [Shorter 170 413 99]
05_1590, 3-METHYLADENINE DNA GLYCOSYLASE, 3MG_HUMAN, gene found by Glimmer
05_1610, unknown, gene found by Glimmer [Bad Olap 174 521 0]