Encephalitozoon cuniculi GB-M1 chromosome IV, complete sequence.
Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon.
Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
Transcriptional signals for accurate microsporidian genome annotation, supporting high quality comparative genomics
Submitted (22-DEC-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (30-AUG-2000) Genoscope -Centre National de Sequencage, 2 rue Gaston Cremieux, CP 5706, 91057 EVRY cedex, FRANCE. (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to AL590444.\nCorresponding author : Equipe de Parasitologie Moleculaire et\nCellulaire, UMR CNRS 6023, Universite Blaise Pascal, 63177 Aubiere\ncedex, France E-mail : Christian.VIVARES@lbp.univ-bpclermont.fr Tel\n: (33) (0)4.73.40.74.57 Fax : (33) (0)4.73.40.74.55 Web :\nhttp://www.protistes.univ-bpclermont.fr/fr/parasito.htm The\nsubmitted sequence encompasses the coding core of the chromosome.\nThe telomeric and subtelomeric sequences are not included in this\nsubmission.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
04_0010, unknown, gene found by Glimmer [Shorter 3 197 99]
large subunit rDNA region, 5.8S-23S rDNA (one copy)
small subunit rDNA region, 16S rDNA (one copy)
04_0125i, 40S RIBOSOMAL PROTEIN S29, RS29_HUMAN
04_0140, 40S RIBOSOMAL PROTEIN S5, RS5_DROME, gene found by Glimmer [Bad Olap 19 38 47], modified ATG by annotation
04_0150, unknown, gene found by Glimmer [Shorter 18 38 51]
tRNA found by tRNAscan-SE, tRNA type: Lys, Anticodon: CTT, Score: 66.06
04_0180, TRANSCRIPTION ELONGATION FACTOR SII, TFS2_SCHPO, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Ile, Anticodon: AAT, Score: 66.46
04_0200, SER/THR PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT BETA, 2A5G_HUMAN, gene found by Glimmer
04_0210, GLUCOSE TRANSPORTER TYPE 3, GTR3_CANFA, gene found by Glimmer
04_0230, POTENTIAL TRANSCRIPTIONAL ADAPTATOR, ADA2_yeast, gene found by Glimmer
04_0250, ATP-DEPENDENT RNA HELICASE (DEAD box family), PRE-mRNA SPLICING FACTOR, PRH1_SCHPO, gene found by Glimmer
DHHC-type Zn finger domain-containing protein
04_0260, similarity to HYPOTHETICAL PROTEIN YB3F_SCHPO, gene found by Glimmer
04_0280, similarity to SUPPRESSOR OF STEM LOOP PROTEIN 1 (ESSENTIAL FOR TRANSLATION INITIATION), SSL1_yeast, gene found by Glimmer
04_0300, PROTEIN TYROSINE PHOSPHATASE, PTPE_MOUSE, gene found by Glimmer
04_0310, 26S PROTEASOME REGULATORY SUBUNIT 4, MTS4_SCHPO, gene found by Glimmer
04_0330, 60S RIBOSOMAL PROTEIN L27, RL27_SOLTU, gene found by Glimmer [Bad Olap 39 183 0]
04_0340, unknown, v11.12, gene found by Glimmer [Shorter 38 183 99]
04_0350, DNA TOPOISOMERASE II, TOP2_SCHPO, gene found by Glimmer
04_0380, unknown, gene found by Glimmer [Bad Olap 44 203 17]
04_0400, HEAT SHOCK TRANSCRIPTION FACTOR, HSF_KLULA, gene found by Glimmer
proteasome regulatory particle lid subunit RPN8
04_0420, 26S PROTEASOME REGULATORY SUBUNIT 12, PRSC_ARATH, gene found by Glimmer
04_0450, 40S RIBOSOMAL PROTEIN SA or P40,(S0), RSP4_MOUSE, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Ile, Anticodon: TAT, Score: 57.75; tRNA-Ile intron: from 57505 to 57545
04_0460, DIMETHYLADENOSINE TRANSFERASE, DIM1_yeast, gene found by Glimmer
04_0480, ABC TRANSPORTER, ABC7_mouse, gene found by Glimmer
04_0490, UBIQUITIN PROTEIN LIGASE E3A, UE3A_HUMAN, gene found by Glimmer
04_0510, similarity to HYPOTHETICAL PROTEIN YCF9_yeast, gene found by Glimmer
04_0530, HSF1 domain, gene found by Glimmer
04_0570, unclear, some similarity with triose P/Pi translocator CPTR_SOLTU, gene found by Glimmer
04_0590, unknown, gene found by Glimmer [Shadowed by 66]
04_0580, LYSYL tRNA SYNTHETASE, SYK_CRILO, gene found by Glimmer, modified ATG by annotation
04_0600, AMINOPEPTIDASE P-LIKE PROTEIN (PROLINE AMINOPEPTIDASE), YAA1_SCHPO, PEPQ_LACHE, gene found by Glimmer, modified ATG by annotation
04_0620, similarity to HYPOTHETICAL PROTEINS Y883_METJA, YHNO_yeast, gene found by Glimmer
04_0630, UBIQUITIN CONJUGATING ENZYME (UBIQUITIN PROTEIN LIGASE) E2 18kDa SUBUNIT, UBC7_CAEEL, UBC7_yeast, gene found by Glimmer [Bad Olap 72 67 0], modified ATG by annotation
04_0640, 40S RIBOSOMAL PROTEIN S11, RS11_yeast, gene found by Glimmer [Shorter 71 67 99]
04_0660, similarity to PUTATIVE LIPASE, yeast CVT17, gene found by Glimmer
04_0670, some similarity with dolichol kinase SC59_yeast, gene found by Glimmer
04_0680, RAS-RELATED GTP-BINDING PROTEIN RAB11, RB1B_ARATH, gene found by Glimmer
04_0690, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN, VP13_YEAST, gene found by Glimmer
04_0700, SER/THR PROTEIN PHOSPHATASE 2-A (PP2A) ALPHA (CATALYTIC SUBUNIT), P2AA_CHICK, gene found by Glimmer
putative tyrosine protein phosphatase MIH1
04_0710, some similarity with M phase inducer phosphatase, MPI3_HUMAN, gene found by Glimmer
04_0720, similarity to HYPOTHETICAL PROTEINS YCE7_HUMAN, YEEE_SCHPO, gene found by Glimmer
04_0740, 60S RIBOSOMAL PROTEIN L22, RL22_TRIGR, gene found by Glimmer
04_0750, SERYL tRNA SYNTHETASE, SYS_HELAN, gene found by Glimmer
04_0760, similarity to PRE-mRNA SPLICING FACTOR PRP8 (U5 snRNP), YLJ6_CAEEL, PR08_yeast, gene found by Glimmer [Bad Olap 85 432 0]
04_0770, unknown, gene found by Glimmer [Shorter 84 432 99]
04_0780, EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (eIF6), IF6_HUMAN, gene found by Glimmer [Shorter 87 423 99]
04_0790, SMALL NUCLEAR RIBONUCLEOPROTEIN F (snRNPF, Sm family), RUXF_DROME
04_0800, putative VESICLE TRANSPORT V-SNARE PROTEIN (Golgi retrograde traffic), VTI1_yeast, gene found by Glimmer
04_0810, CALCIUM-BINDING PROTEIN OF THE RECOVERIN SUBFAMILY, NCS1_yeast, VIS3_MOUSE, NECD_BOVIN, gene found by Glimmer
04_0820, NUCLEOLAR PROTEIN SIMILAR TO NOP5 (18S rRNA production), NOP5_yeast, gene found by Glimmer
04_0830, unknown, gene found by Glimmer [Shorter 93 106 99]
04_0840, similarity to ASPARAGINE SYNTHETASE, ASNH_METJA, ASN1_yeast, gene found by Glimmer [Bad Olap 92 106 0], modified ATG by annotation
04_0850, DNA REPLICATION LICENSING FACTOR MCM2, CC19_SCHPO, MCM2_DROME, gene found by Glimmer
04_0890, PSEUDOURIDYLATE SYNTHASE 2, PSU2_yeast, gene found by Glimmer
04_0900, PHENYLALANYL tRNA SYNTHETASE ALPHA CHAIN, SYFA_CANAL, gene found by Glimmer
04_0910, putative ATP-DEPENDENT RNA HELICASE (SKI2 SUBFAMILY), YDVG_SCHPO, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Leu, Anticodon: CAA, Score: 59.49
04_0930, CHROMOSOME SEGREGATION PROTEIN, SMC1_yeast, SMC2_yeast, gene found by Glimmer
endoplasmic reticulum translocation complex subunit Sec66
04_0940, similarity to TRANSLOCATION PROTEIN SEC66 (ER translocation complex), SC66_yeast, gene found by Glimmer
transcription initiation factor TFIID subunit TAF13
04_0950, TRANSCRIPTION INITIATION FACTOR TFIID, 18kDa SUBUNIT, T2DB_HUMAN, T2DB_yeast, gene found by Glimmer
04_0970, homeobox domain, gene found by Glimmer
RNA-binding signal recognition particle subunit SRP54
04_0980, SIGNAL RECOGNITION PARTICLE 54kDa SUBUNIT (SRP54), SR54_HUMAN, SR54_yeast, gene found by Glimmer
04_1000, MYOSIN HEAVY CHAIN, NONMUSCLE TYPE A, MYST_RABIT, MYSN_HUMAN, gene found by Glimmer
04_1015, 40S RIBOSOMAL PROTEIN S27, RS27_XENLA
04_1020, T COMPLEX PROTEIN 1 THETA SUBUNIT, TCPQ_yeast, TCPQ_SCHPO, gene found by Glimmer
04_1030, homeobox domain, gene found by Glimmer
04_1060, DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE (DOLICHOL-PHOSPHATE MANNOSE SYNTHASE), DPM1_yeast, gene found by Glimmer
04_1070, DNA TOPOISOMERASE III, TOP3_SCHPO, gene found by Glimmer
04_1090, ACTIN-LIKE 53kDa PROTEIN, ACT_BRUMA, gene found by Glimmer
translation elongation factor EF-1 alpha
04_1100, TRANSLATION ELONGATION FACTOR 1 ALPHA, EF1A_MAIZE, gene found by Glimmer
04_1110, similarity to MEIOTIC RECOMBINATION PROTEIN REC12, RE12_SCHPO, SP11_HUMAN, gene found by Glimmer
04_1120, unclear, some similarity to UDP-Gal beta GlcNAC beta 1,4 galactosyltransferase (two different frames), gene found by Glimmer
04_1130, putative MANNOSYLTRANSFERASE OF THE KTR FAMILY, KRE2_CANAL, YUR1_yeast, gene found by Glimmer
04_1140, VALYL tRNA SYNTHETASE, SYV_yeast, gene found by Glimmer
04_1160, PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT, ODPB_RICPR, ODPB_SCHPO, gene found by Glimmer
04_1170, EUKARYOTIC TRANSLATION INITIATION FACTOR 1A, IF1A_yeast, gene found by Glimmer
04_1180, NUCLEOSIDE TRIPHOSPHATASE (HAM1 FAMILY), HAM1_yeast, gene found by Glimmer
04_1190, similarity to PUTATIVE AMINOACID TRANSPORTER (integral membrane protein) YEU9_yeast, gene found by Glimmer
04_1210, UBIQUITIN FUSION DEGRADATION PROTEIN 2, UFD2_yeast, gene found by Glimmer
bifunctional thymidylate/uridylate kinase
04_1220, THYMIDYLATE KINASE, KTHY_yeast, gene found by Glimmer
04_1230, SIGNAL SEQUENCE RECEPTOR ALPHA SUBUNIT (TRANSLOCON-ASSOCIATED PROTEIN ALPHA SUBUNIT, SSRP FAMILY)),SSRP_TREPA, gene found by Glimmer
04_1240, similarity to HYPOTHETICAL PROTEIN YK61_yeast, gene found by Glimmer
04_1250, CDC20-LIKE PROTEIN, YGA3_yeast, gene found by Glimmer
04_1280, BELONGS TO THE ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE FAMILY, Y205_HUMAN, gene found by Glimmer
04_1290, ATP-DEPENDENT RNA HELICASE (SKI2 FAMILY), SKIW_HUMAN, gene found by Glimmer
04_1300, RNA-binding domain, gene found by Glimmer
04_1310, 60S RIBOSOMAL PROTEIN L32, RL32_HUMAN, gene found by Glimmer
04_1355, 40S RIBOSOMAL PROTEIN S10, RS10_SCHPO
04_1360, similarity to E. COLI PERIPLASMIC DIVALENT CATION TOLERANCE PROTEIN CUTA, CUTA_ECOLI, gene found by Glimmer [Delay by 63 153 47 12]
04_1380, 60S RIBOSOMAL PROTEIN L13A (L16), R16C_SCHPO, gene found by Glimmer
04_1400, DNA-DIRECTED RNA POLYMERASE I, LARGEST SUBUNIT (190 kDa POLYPETIDE), RPA1_SCHPO, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Met, Anticodon: CAT, Score: 71.39
tRNA found by tRNAscan-SE, tRNA type: Pro, Anticodon: TGG, Score: 55.20
04_1440, TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1, TBP), TF2D_ACACA, gene found by Glimmer
04_1460, CYCLIN B-LIKE GUANINE NUCLEOTIDE BINDING PROTEIN, CG2B_CARAU, gene found by Glimmer
04_1470, Na+/H+ ANTIPORTER, NHA1_yeast, gene found by Glimmer
04_1480, Zinc finger protein, ZPR1_HUMAN, gene found by Glimmer
04_1500, REGULATOR OF CHROMOSOME CONDENSATION, RCC_HUMAN, RCC_SCHPO, gene found by Glimmer [Bad Olap 167 177 0]
04_1510, unknown, gene found by Glimmer [Shorter 166 177 99]
04_1560, GTP-BINDING NUCLEAR PROTEIN, GSP1_yeast, gene found by Glimmer
04_1580, similarity to HYPOTHETICAL PROTEIN YKB8_yeast, gene found by Glimmer
04_1610, unclear, some similarity to transcription initiation factor 4F subunit, gene found by Glimmer
Short protein (ECU04_1622, SKD10694.1) was converted to a misc_feature.
04_1680, unknown, gene found by Glimmer [Shorter 186 109 73]
04_1690, unknown, gene found by Glimmer [Bad Olap 185 109 26]