Encephalitozoon cuniculi GB-M1 chromosome II, complete sequence.
Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon.
Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
Transcriptional signals for accurate microsporidian genome annotation, supporting high quality comparative genomics
Submitted (22-DEC-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (30-AUG-2000) Genoscope -Centre National de Sequencage, 2 rue Gaston Cremieux, CP 5706, 91057 EVRY cedex, FRANCE. (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to AL590442.\nCorresponding author : Equipe de Parasitologie Moleculaire et\nCellulaire, UMR CNRS 6023, Universite Blaise Pascal, 63177 Aubiere\ncedex, France E-mail : Christian.VIVARES@lbp.univ-bpclermont.fr Tel\n: (33) (0)4.73.40.74.57 Fax : (33) (0)4.73.40.74.55 Web :\nhttp://www.protistes.univ-bpclermont.fr/fr/parasito.htm The\nsubmitted sequence encompasses the coding core of the chromosome.\nThe telomeric and subtelomeric sequences are not included in this\nsubmission.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
02_0100,similarity to HSP70-RELATED PROTEIN PROTEIN COGNATE 4 (HSC70), HS2-YEAST, gene found by Glimmer
02_0140, RAN SPECIFIC GTPASE ACTIVATING PROTEIN, RANG_yeast, gene found by Glimmer
02_0200, similarity to yeast gene INVOLVED IN PLASMID MAINTENACE, RESPIRATION AND CELL PROLIFERATION, SMP2_yeast, gene found by Glimmer
02_0230, ISOPENTENYL-DIPHOSPHATE-DELTA-ISOMERASE II, IDI2_ARATH, gene found by Glimmer
02_0240, U3 snoRNA-ASSOCIATED RNP (18S rRNA PRODUCTION), SOF1_yeast, gene found by Glimmer
02_0250, putative RNA-binding protein with some similarity to polyadenylate-binding proteins, gene found by Glimmer
02_0260, GATA ZINC FINGER TRANSCRIPTION FACTOR 3, GAT1_HUMAN, gene found by Glimmer
02_0290, DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT, RFC3_yeast, gene found by Glimmer
02_0310, zinc finger protein (some similarity with nuclear pore protein BUD20), gene found by Glimmer
02_0330, PROBABLE CATION TRANSPORTING ATPase (plasma membrane) YE56_CAEEL, ATC6_yeast, gene found by Glimmer
02_0340, 26S PROTEASOME BETA SUBUNIT, theta chain, PRCT_yeast, gene found by Glimmer
02_0410, RAS-LIKE GTP-BINDING PROTEIN (RHO subfamily), RHO1_CANAL, gene found by Glimmer
02_0420, unclear (some similarity with myb-related transcriptional regulator), gene found by Glimmer
02_0430, SEC1-LIKE SYNTAXIN-BINDING PROTEIN, STB2_HUMAN, gene found by Glimmer
02_0440, GLUTATHION PEROXIDASE, GSHH_RAT, gene found by Glimmer
transcription initiation factor IIA subunit gamma
02_0450, TRANSCRIPTION INITIATION FACTOR IIA, GAMMA SUBUNIT, T2AG_ARATH, gene found by Glimmer
02_0460, similarity to NUCLEAR PORE COMPLEX PROTEINS NUP98/116, gene found by Glimmer
proteasome regulatory particle base subunit RPN2
02_0480, 26S PROTEASOME REGULATORY SUBUNIT 2, HRD2_yeast, gene found by Glimmer
02_0510, MPS1-LIKE THR/TYR DUAL SPECIFICITY PROTEIN KINASE, MPS1_yeast, v11.12, gene found by Glimmer
02_0520, T COMPLEX PROTEIN 1 DELTA SUBUNIT, TCPD_HUMAN, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA Type: Ser, Anticodon : CGA, Score : 57.41
02_0530, similarity to HYPOTHETICAL PROTEIN CGB0_HUMAN
tRNA found by tRNAscan-SE, tRNA type: Thr, Anticodon : CGT, Score : 71.30
02_0540, CLATHRIN COAT ASSEMBLY PROTEIN, ADAPTIN, AP47_MOUSE, gene found by Glimmer
02_0550, SPK1-LIKE SER/THR PROTEIN KINASE, SPK1_YEAST, gene found by Glimmer
02_0570, similarity to HYPOTHETICAL PROTEIN YO47_METJA, gene found by Glimmer
02_0580,HYDROXYACYL GLUTATHION HYDROLASE, GLO2_yeast, gene found by Glimmer
02_0610, 60S RIBOSOMAL PROTEIN L11, RL11_DROME, gene found by Glimmer
02_0640, TRANSCRIPTIONAL REPRESSOR FOR RNA POLYMERASE II, TUP1_CANAL, v11.12, gene found by Glimmer
02_0660, similarity to HYPOTHETICAL PROTEIN YDOA_SCHPO, gene found by Glimmer
02_0670, PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box family), AN3_XENLA, gene found by Glimmer
02_0680, DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT, RFC2_yeast, gene found by Glimmer
02_0690, HSB-LIKE CHAPERONE (HSC20), HSCB_HAEIN, gene found by Glimmer
02_0710, HISTONE TRANSCRIPTION REGULATOR, HIRL_SCHPO, v11.12, gene found by Glimmer
02_0720, HISTONE H2A, H2A1_TETPY, gene found by Glimmer
02_0730, POLY (A) POLYMERASE TYPE 1, PAP_yeast, gene found by Glimmer
02_0740i, UBIQUITIN, UBIQ_STRPU, gene found by Glimmer, modified ATG by annotation
02_0750i, 60S RIBOSOMAL PROTEIN L7A /yeast L8, RL8B_yeast, gene found by Glimmer, modified ATG by annotation, intron created
signal peptidase complex catalytic subunit SEC11
02_0760, SIGNAL PEPTIDASE 18kDa SUBUNIT, SPC4_CANFA, gene found by Glimmer
02_0770, 40S RIBOSOMAL PROTEIN S17, RS17_SCHPO, RS17_HUMAN
02_0780, TRANSCRIPTION INITIATION FACTOR TFIIF BETA SUBUNIT, T2FB_HUMAN, gene found by Glimmer
02_0800, 60S RIBOSOMAL PROTEIN L9, RL9B_SCHPO, RL9_RAT, gene found by Glimmer [Shorter 81 605 99]
02_0810, 60S RIBOSOMAL PROTEIN L24, RL24_CAEEL, gene found by Glimmer
02_0850, PROTEIN DISULFIDE ISOMERASE, PDI1_SCHPO, gene found by Glimmer
02_0860, SERINE PALMITOYLTRANSFERASE SUBUNIT 1, LCB1_HUMAN, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Pro, Anticodon: AGG, Score: 60.16
02_0880, 40S RIBOSOMAL PROTEIN S8, RS8_SCHPO, gene found by Glimmer, modified ATG by annotation
02_0900, 60S RIBOSOMAL PROTEIN L35A (L33), R35A_CAEEL, gene found by Glimmer
02_0930, similarity to SUPPRESSOR OF FORKED PROTEIN(mRNA stability), SUF_DROME, v11.12, gene found by Glimmer
02_0940, THIOREDOXIN REDUCTASE, TRXB_CHLPN, gene found by Glimmer
02_0960, putative membrane integral protein with some similarity to endosomal P24, gene found by Glimmer
02_0970, unknown, gene found by Glimmer [Shorter 102 61 99]
02_0980, unknown, gene found by Glimmer [Bad Olap 101 61 0]
02_1010, similarity to HYPOTHETICAL PROTEIN YDED_SCHPO, gene found by Glimmer
02_1020, SMALL NUCLEAR RIBONUCLEOPROTEIN E, snRNP E, (Sm family), RUXE_yeast, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Ala, Anticodon: TGC, Score: 63.15
nascent polypeptide-associated complex domain-containing protein
02_1050, similarity to GAL4 DNA-BINDING ENHANCER PROTEIN, EGD2_yeast,gene found by Glimmer
02_1060, PROTEIN FARNESYL TRANSFERASE ALPHA SUBUNIT (CAAX FARNESYLTRANSFERASE), RAM2_yeast, gene found by Glimmer
ubiquitin-40S ribosomal protein S31 fusion protein
02_1080, similarity to monoubiquitin/carboxy-extension protein fusion, UBI1 CEP, gene found by Glimmer
02_1090, ATP-DEPENDENT DNA-BINDING HELICASE (RAD3/XPD subfamily, G2/M transition), CHL1_yeast, gene found by Glimmer
02_1100, HEAT-SHOCK PROTEIN HSP90 HOMOLOG, HS9A_BRARE, gene found by Glimmer
02_1120, unknown, gene found by Glimmer [Shorter 120 329 99]
02_1130, PROTEIN KINASE OF THE PI3/PI4 FAMILY, ESR1_yeast, gene found by Glimmer [Bad Olap 119 329 0]
microsomal signal peptidase 25 kDa subunit
02_1140, SIGNAL PEPTIDASE 21kDa SUBUNIT, SPC3_CANFA, gene found by Glimmer
02_1150, DNA REPLICATION LICENSING FACTOR OF THE MCM FAMILY (MCM4), MCM4_MOUSE, MCM4_SCHPO, gene found by Glimmer
02_1200, some similarity to homeobox domain-containing protein, PMX2_MOUSE, gene found by Glimmer
02_1210, GLUTAMYL tRNA SYNTHETASE, SYEC_yeast, gene found by Glimmer
02_1220, DNA LIGASE, DNL1_MOUSE, gene found by Glimmer
02_1230, some similarity to SEC24-related protein (COPII coat), gene found by Glimmer
02_1240, 13S CONDENSIN SUBUNIT, CND1_SCHPO, gene found by Glimmer
02_1250, TRANSCRIPTION INITIATION FACTOR TFIID 28kDa SUBUNIT, T2D9_HUMAN, gene found by Glimmer
02_1270, D1B1-LIKE PROTEIN REQUIRED FOR MITOSIS ENTRY,D1B1_yeast, gene found by Glimmer
02_1300, DOLICHOL-PHOSPHATE MANNOSE PROTEIN MANNOSYLTRANSFERASE, PMT3_yeast, gene found by Glimmer
02_1320, some similarity to RAD4 protein, RAD4_SCHPO, gene found by Glimmer
02_1340, similarity to HYPOTHETICAL PROTEIN YA7C_SCHPO (hypothetical protein similar to the C-terminal of ubiquitin-activating enzymes), gene found by Glimmer
02_1350, TRANSCRIPTION FACTOR OF THE E2F/DP FAMILY, E2F6_MOUSE, E2F5_RAT, gene found by Glimmer
02_1360, PROLYL tRNA SYNTHETASE, gene found by Glimmer
02_1370, ALPHA ALPHA TREHALASE PRECURSOR, TREA_TENMO, gene found by Glimmer
02_1380, CAAX PRENYL PROTEASE 1, (PRENYL PROTEIN SPECIFIC ENDOPROTEASE 1) ST24_yeast, gene found by Glimmer
02_1400, similarity to HYPOTHETICAL WD-REPEAT PROTEIN (PRL1/PRL2 family) YN57_yeast, gene found by Glimmer
RAB protein geranylgeranyltransferase subunit A
02_1410, SECRETORY PATHWAY GDP DISSOCIATION INHIBITOR ALPHA, YD4C SCHPO, GDI_yeast, gene found by Glimmer
02_1430, similarity to HYPOTHETICAL ATP-BINDING PROTEIN YJ42_yeast, gene found by Glimmer
02_1450, similarity to SER/THR CYCLIN-DEPENDENT PROTEIN KINASE KIN28 (CDK7 homolog), KI28_yeast, gene found by Glimmer
02_1460, similarity to HYPOTHETICAL PROTEIN YNE9_yeast, v11.12, gene found by Glimmer
02_1470, similarity to HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YIPC_yeast, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Leu, Anticodon : AAG, Score : 59.34
02_1490, ALANYL tRNA SYNTHETHASE, SYAC_yeast, gene found by Glimmer
transcription initiation factor TFIID subunit A
02_1500, TRANSCRIPTION INITIATION FACTOR TFIID 20/15kDa SUBUNIT (TAFII-20/TAFII-15), T2DA_HUMAN, gene found by Glimmer
02_1520, ATP-DEPENDENT RNA HELICASE INVOLVED IN mRNA EXPORT FROM THE NUCLEUS, DBP5_yeast, gene found by Glimmer
02_1590, rDNA REGION, gene found by Glimmer