Komagataeibacter xylinus strain DSM 2325 plasmid unnamed2, complete sequence.
type: Entry
definition: Komagataeibacter xylinus strain DSM 2325 plasmid unnamed2, complete sequence.
sequence version: NZ_CP025271.1
sequence date: 2023-05-18
sequence: sequence
division: CON
label: NZ_CP025271.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08156970
keyword: RefSeq
source: Komagataeibacter xylinus
organism: Komagataeibacter xylinus
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP025271.1.\nBacteria and source DNA available from DSMZ.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3; SPAdes v. 3.6.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1724.0x\nSequencing Technology :: PacBio; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/09/2023 01:28:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,586\nCDSs (total) :: 3,513\nGenes (coding) :: 3,405\nCDSs (with protein) :: 3,405\nGenes (RNA) :: 73\nrRNAs :: 4, 5, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 5, 4 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 108\nCDSs (without protein) :: 108\nPseudo Genes (ambiguous residues) :: 0 of 108\nPseudo Genes (frameshifted) :: 27 of 108\nPseudo Genes (incomplete) :: 87 of 108\nPseudo Genes (internal stop) :: 17 of 108\nPseudo Genes (multiple problems) :: 19 of 108\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5309
topology: circular
so has quality: SO_0000988
location: 1..5309
location: region:1-5309:1
RO_0002162: 28448

NZ_CP025271
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08156970
type: BioSample
SIO_000068: biosample

1
title: Genomic analysis and metabolic reconstruction of Komagataeibacter xylinus DSM 2325 producing bacterial cellulose nanofiber
author: Jang, W.D.
author: Kim, T.Y.
author: Kim, H.U.
author: Park, J.H.
author: Lee, S.Y.
journal: Unpublished

2
title: Direct Submission
author: Kim, H.U.
journal: Submitted (10-DEC-2017) BioInformatics Research Center, KAIST, 291 Daehak-ro, Daejeon 34141, Korea, Republic of

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5309:1
position: 5309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5309:1:source
so part of: sequence
organism: Komagataeibacter xylinus
mol type: genomic DNA
strain: DSM 2325
culture collection: DSM:2325
plasmid: unnamed2
collection date: 1982

28448
type: Taxonomy
SIO_000068: taxonomy

CXP35_RS17885
type: Gene
subclass of: SO_0000704
RO_0002162: 28448
locus tag: CXP35_RS17885
old locus tag: CXP35_17745
so part of: sequence
location: join(5227..5309,1..421)
location: region:1-5309:1
so has part: feature:5227-5309:1:exon
so has part: feature:1-421:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:5227-5309:1:exon

position:5227:1
position: 5227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-421:1:exon

position:421:1
position: 421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CXP35_RS17885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28448
locus tag: CXP35_RS17885
old locus tag: CXP35_17745
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO process: GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: replication/maintenance protein RepL
translation: MGSGGYLTQKPAKSLRHKLSPKPLVTQGTGEIIEAQVVTKTIGDAGFHKVWLSEILELVDEVGNAKMKILMWLLSKTDHQNQVLATHQEIANATGTSPKTVQRLMRSLKAALVIVEPRRSLWRLNPDVIFKGDHRQRMNVLVKYRSETAQADMFDLDVKRVAKKDAA
SIO_010081: CXP35_RS17885
subclass of: SO_0000673
so part of: CXP35_RS17885
location: join(5227..5309,1..421)
location: region:1-5309:1
so has part: feature:5227-5309:1:exon
so has part: feature:1-421:1:exon

WP_129552140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5227-5309:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-421:1:exon

CXP35_RS18270
type: Gene
subclass of: SO_0000704
RO_0002162: 28448
locus tag: CXP35_RS18270
so part of: sequence
location: 466..642
location: region:466-642:1
so has part: feature:466-642:1:exon
subclass of: SO_0000010

position:466:1
position: 466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:642:1
position: 642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:466-642:1:exon

CXP35_RS18270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28448
locus tag: CXP35_RS18270
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTWPCDKYPYGSPAWFQCLLEQLKKVGGDDWAEKINGALSNDDKEILLEELSKKSET
SIO_010081: CXP35_RS18270
subclass of: SO_0000673
so part of: CXP35_RS18270
location: 466..642
location: region:466-642:1
so has part: feature:466-642:1:exon

WP_165165766.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:466-642:1:exon

CXP35_RS17890
type: Gene
subclass of: SO_0000704
RO_0002162: 28448
gene: mobQ
locus tag: CXP35_RS17890
old locus tag: CXP35_17750
so part of: sequence
location: complement(656..1987)
location: region:656-1987:-1
so has part: feature:656-1987:-1:exon
subclass of: SO_0000010

position:656:-1
position: 656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1987:-1
position: 1987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:656-1987:-1:exon

CXP35_RS17890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28448
gene: mobQ
locus tag: CXP35_RS17890
old locus tag: CXP35_17750
inference: COORDINATES: protein motif:HMM:NF015354.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIFHLSVKTVSRSTGRSAVSAAAYRTGDTLTNERDGRHHDYTRRSGVDGSFIMAPTGCDWAMDRSRLWNTAEQTEKRSNSVTAREYVLALPAELDATERSDLARAFAGALVERYGVAADVALHAPSREGDERNYHAHILTTTREVEPDSLGKKTRILDAAKTGGPEIESLRELWAMQCNEALERHNKPARVDHRSYERQGVEKMPTLHLGPTSVTIERKHQAEAEAERKGEDYQPRTFKAQENRRRRGLNERVRELAQELSGVIQKVHAAKKAAASSLVRAFGRSRRAEQETEARYAEMLRQREAEQRRQAEEQQERAAEVRRNVLKRQEEQKRRIESRLAQLIREAPEKRAELFARFYPTDPLARAVDAKLHRMGLEELEAEEKAVRTGLERYEAQERQRRSEGPGMRMKGRGRGRGGPSRSRDRDTDPDPSDGGSSFEPF
SIO_010081: CXP35_RS17890
subclass of: SO_0000673
so part of: CXP35_RS17890
location: complement(656..1987)
location: region:656-1987:-1
so has part: feature:656-1987:-1:exon

WP_129552135.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:656-1987:-1:exon

CXP35_RS17895
type: Gene
subclass of: SO_0000704
RO_0002162: 28448
locus tag: CXP35_RS17895
old locus tag: CXP35_17755
so part of: sequence
location: 2149..2478
location: region:2149-2478:1
so has part: feature:2149-2478:1:exon
subclass of: SO_0000010

position:2149:1
position: 2149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2478:1
position: 2478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2149-2478:1:exon

CXP35_RS17895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28448
locus tag: CXP35_RS17895
old locus tag: CXP35_17755
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019092403.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mobilization protein
translation: MSDAVQHKKSAKIIAAEERLEQAKRALRDAKQAENRQQRKIADRQKIILGATLLNLAERDDRFSRVIDELLKSLTREQDVKAFRDHCFVTPRPENDQNPTTAYGVHTGA
SIO_010081: CXP35_RS17895
subclass of: SO_0000673
so part of: CXP35_RS17895
location: 2149..2478
location: region:2149-2478:1
so has part: feature:2149-2478:1:exon

WP_129552136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2149-2478:1:exon

CXP35_RS17900
type: Gene
subclass of: SO_0000704
RO_0002162: 28448
locus tag: CXP35_RS17900
old locus tag: CXP35_17760
so part of: sequence
location: 2482..3030
location: region:2482-3030:1
so has part: feature:2482-3030:1:exon
subclass of: SO_0000010

position:2482:1
position: 2482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3030:1
position: 3030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2482-3030:1:exon

CXP35_RS17900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28448
locus tag: CXP35_RS17900
old locus tag: CXP35_17760
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNDSGDDDDDFALQELEKLRQTIIKSQEAYSRIADTIPEHVQFLENSAHEIKKSADEVGKSCKAVTGYISGDRKALIWTCSTSALLLVFVAAFLGYTFGHRGGYAEGLAKVQQQAKARSALAEWAASSPSGALAYQMDQAGEVQAFGRCQIEGYHVVQKQGERWCTPMRDTGGGPEWSLPSS
SIO_010081: CXP35_RS17900
subclass of: SO_0000673
so part of: CXP35_RS17900
location: 2482..3030
location: region:2482-3030:1
so has part: feature:2482-3030:1:exon

WP_129552137.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2482-3030:1:exon

CXP35_RS17905
type: Gene
subclass of: SO_0000704
RO_0002162: 28448
locus tag: CXP35_RS17905
old locus tag: CXP35_17765
so part of: sequence
location: 3048..3320
location: region:3048-3320:1
so has part: feature:3048-3320:1:exon
subclass of: SO_0000010

position:3048:1
position: 3048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3320:1
position: 3320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3048-3320:1:exon

CXP35_RS17905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28448
locus tag: CXP35_RS17905
old locus tag: CXP35_17765
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019092405.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HigA family addiction module antitoxin
translation: MMPRDINRCPTHPGELLRMDVFPASGMDAPEIAQALGISCQSLDELLAARKSVTPDLAERLGQLLGNGPGLWIRMQAAHDDWRARHNNAS
SIO_010081: CXP35_RS17905
subclass of: SO_0000673
so part of: CXP35_RS17905
location: 3048..3320
location: region:3048-3320:1
so has part: feature:3048-3320:1:exon

WP_129552138.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3048-3320:1:exon

CXP35_RS17910
type: Gene
subclass of: SO_0000704
RO_0002162: 28448
locus tag: CXP35_RS17910
old locus tag: CXP35_17770
so part of: sequence
location: 3537..3728
location: region:3537-3728:1
so has part: feature:3537-3728:1:exon
subclass of: SO_0000010

position:3537:1
position: 3537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3728:1
position: 3728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3537-3728:1:exon

CXP35_RS17910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28448
locus tag: CXP35_RS17910
old locus tag: CXP35_17770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010668484.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEALSPIVSEFETAKQETEYTAWLQAKIAASLADPRPPIPHDEVMAEMESIIRTAEQRRRSA
SIO_010081: CXP35_RS17910
subclass of: SO_0000673
so part of: CXP35_RS17910
location: 3537..3728
location: region:3537-3728:1
so has part: feature:3537-3728:1:exon

WP_026019886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3537-3728:1:exon

CXP35_RS17915
type: Gene
subclass of: SO_0000704
RO_0002162: 28448
locus tag: CXP35_RS17915
old locus tag: CXP35_17775
so part of: sequence
location: 3728..4006
location: region:3728-4006:1
so has part: feature:3728-4006:1:exon
subclass of: SO_0000010

position:4006:1
position: 4006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3728-4006:1:exon

CXP35_RS17915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28448
locus tag: CXP35_RS17915
old locus tag: CXP35_17775
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013789853.1
GO function: GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO process: GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MLPIAWRDTARTDLRQIITDIAAENPPAARRLKIRLEAVVQPLSEHPYLYRTSERAAGLREIVAHPNYIVLYRVTATSVEIVNVVHARRQFP
SIO_010081: CXP35_RS17915
subclass of: SO_0000673
so part of: CXP35_RS17915
location: 3728..4006
location: region:3728-4006:1
so has part: feature:3728-4006:1:exon

WP_081500435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3728-4006:1:exon

CXP35_RS17920
type: Gene
subclass of: SO_0000704
RO_0002162: 28448
locus tag: CXP35_RS17920
old locus tag: CXP35_17780
so part of: sequence
location: 4127..4504
location: region:4127-4504:1
so has part: feature:4127-4504:1:exon
subclass of: SO_0000010

position:4127:1
position: 4127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4504:1
position: 4504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4127-4504:1:exon

CXP35_RS17920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28448
locus tag: CXP35_RS17920
old locus tag: CXP35_17780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019092408.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDDPKPWSIRGVHPEVRNAALSAARREGLTIGDWLDRAIRSHIKSGRKQGENLSDTPVRQATDLSDAERLVSMIAQLSAAGAPIPKSVAAKAYALIRDSLKDAQQQKKVGSLEHQGALTAPEGP
SIO_010081: CXP35_RS17920
subclass of: SO_0000673
so part of: CXP35_RS17920
location: 4127..4504
location: region:4127-4504:1
so has part: feature:4127-4504:1:exon

WP_129552139.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4127-4504:1:exon