Halapricum desulfuricans strain HSR-Bgl plasmid pHSR-Bgl01, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Halapricum.
Carbohydrate-dependent, anaerobic sulfur respiration: A novel catabolism in halophilic archaea
Submitted (11-NOV-2020) Marine Molecular Microbiology & Biotech, C.N.R. - Institute for Biological Resources and Marine Biotechnology (IRBIM), Spianata S. Raineri, 86, Messina 98122, Italy
REFSEQ INFORMATION: The reference sequence is identical to\nCP064790.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JAN-2019\nAssembly Method :: Unicycler v. 0.4.6; Geneious v. 7.1.9\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 250.0x\nSequencing Technology :: Illumina MiSeq; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/05/2022 02:53:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,155\nCDSs (total) :: 3,100\nGenes (coding) :: 3,019\nCDSs (with protein) :: 3,019\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 21 of 81\nPseudo Genes (incomplete) :: 64 of 81\nPseudo Genes (internal stop) :: 19 of 81\nPseudo Genes (multiple problems) :: 20 of 81\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004060789.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006183520.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966966.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035178.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142736.1
COORDINATES: protein motif:HMM:NF015089.2
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048543.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012298.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_012659234.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007992683.1
COORDINATES: protein motif:HMM:NF013964.2
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004514850.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035721.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514852.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524896.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_015310255.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289741.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524572.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053212.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053341.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446335.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004517744.1
COORDINATES: similar to AA sequence:RefSeq:WP_006168173.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010904071.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014865863.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009488254.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488255.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881857.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008388866.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945646.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945647.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421728.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008444947.1
COORDINATES: protein motif:HMM:NF024753.2
COORDINATES: similar to AA sequence:RefSeq:WP_008573273.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048595.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183366.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865851.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971387.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
SWIM zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004043292.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061502.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004061504.1
transcription initiation factor IIB family protein
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: protein motif:HMM:NF037417.2
COORDINATES: similar to AA sequence:RefSeq:WP_004048609.1
COORDINATES: protein motif:HMM:NF037096.2
COORDINATES: similar to AA sequence:RefSeq:WP_006182403.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048615.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289744.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555704.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182416.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007995046.1
COORDINATES: similar to AA sequence:RefSeq:WP_006066879.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971372.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904232.1
COORDINATES: protein motif:HMM:NF015146.2
COORDINATES: similar to AA sequence:RefSeq:WP_013035180.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008524970.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006090454.1
COORDINATES: similar to AA sequence:RefSeq:WP_015788681.1
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: similar to AA sequence:RefSeq:WP_008012113.1
COORDINATES: similar to AA sequence:RefSeq:WP_015790212.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182381.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008458001.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458711.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580521.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762229.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488207.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762226.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053433.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488210.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762223.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184771.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890501.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015763500.1
COORDINATES: similar to AA sequence:RefSeq:WP_011571176.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008457963.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736722.1
COORDINATES: protein motif:HMM:NF022932.2
TrmB family transcriptional regulator sugar-binding domain-containing protein
COORDINATES: protein motif:HMM:NF027245.2
COORDINATES: protein motif:HMM:NF025168.2
COORDINATES: protein motif:HMM:NF014566.2
type II CAAX endopeptidase family protein
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_008849718.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966861.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053455.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107477.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182382.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289077.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611739.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007107478.1
COORDINATES: similar to AA sequence:RefSeq:WP_010903158.1
COORDINATES: similar to AA sequence:RefSeq:WP_007108991.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524507.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261539.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159055.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524952.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807474.1
COORDINATES: protein motif:HMM:NF012503.2
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017342055.1
COORDINATES: protein motif:HMM:NF025030.2
COORDINATES: similar to AA sequence:RefSeq:WP_007743568.1
ADP-ribosylglycohydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008456208.1
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: similar to AA sequence:RefSeq:WP_014555098.1