Gemmobacter fulva strain con5 plasmid p6, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Gemmobacter.
Submitted (01-JUN-2021) College of Biology and the Environment, Nanjing Forestry University, Longpan 59, Nanjing, Jiangsu 210000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP076367.1.\nBacteria and source DNA available from KCTC 82246.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/20/2022 07:36:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,524\nCDSs (total) :: 4,463\nGenes (coding) :: 4,393\nCDSs (with protein) :: 4,393\nGenes (RNA) :: 61\nrRNAs :: 3, 2, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 2, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 70\nCDSs (without protein) :: 70\nPseudo Genes (ambiguous residues) :: 0 of 70\nPseudo Genes (frameshifted) :: 18 of 70\nPseudo Genes (incomplete) :: 60 of 70\nPseudo Genes (internal stop) :: 6 of 70\nPseudo Genes (multiple problems) :: 12 of 70\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012508457.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014101030.1
HI0074 family nucleotidyltransferase substrate-binding subunit
COORDINATES: protein motif:HMM:NF025639.2
COORDINATES: similar to AA sequence:RefSeq:WP_007602188.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975328.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007817478.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558172.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008208328.1
transcriptional regulator/antitoxin MazE
COORDINATES: protein motif:HMM:NF024784.2
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009565465.1
COORDINATES: similar to AA sequence:RefSeq:WP_017140485.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_007626576.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019966660.1
COORDINATES: similar to AA sequence:RefSeq:WP_008330831.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007331490.1
COORDINATES: similar to AA sequence:RefSeq:WP_008616345.1
COORDINATES: similar to AA sequence:RefSeq:WP_007967576.1
COORDINATES: similar to AA sequence:RefSeq:WP_017930026.1
COORDINATES: similar to AA sequence:RefSeq:WP_008621474.1
COORDINATES: similar to AA sequence:RefSeq:WP_013220619.1
COORDINATES: similar to AA sequence:RefSeq:WP_011387995.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]