Gemmobacter fulva strain con5 plasmid p4, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Gemmobacter.
Submitted (01-JUN-2021) College of Biology and the Environment, Nanjing Forestry University, Longpan 59, Nanjing, Jiangsu 210000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP076365.1.\nBacteria and source DNA available from KCTC 82246.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/20/2022 07:36:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,524\nCDSs (total) :: 4,463\nGenes (coding) :: 4,393\nCDSs (with protein) :: 4,393\nGenes (RNA) :: 61\nrRNAs :: 3, 2, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 2, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 70\nCDSs (without protein) :: 70\nPseudo Genes (ambiguous residues) :: 0 of 70\nPseudo Genes (frameshifted) :: 18 of 70\nPseudo Genes (incomplete) :: 60 of 70\nPseudo Genes (internal stop) :: 6 of 70\nPseudo Genes (multiple problems) :: 12 of 70\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007803302.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009820104.1
COORDINATES: similar to AA sequence:RefSeq:WP_008336053.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
strawberry notch C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019867575.1
COORDINATES: similar to AA sequence:RefSeq:WP_008877992.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010408889.1
COORDINATES: similar to AA sequence:RefSeq:WP_008877989.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065919.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009820102.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008759285.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803278.1
antitoxin of toxin-antitoxin stability system
COORDINATES: similar to AA sequence:RefSeq:WP_009820093.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030529.1
COORDINATES: similar to AA sequence:RefSeq:WP_008495261.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820090.1
COORDINATES: similar to AA sequence:RefSeq:WP_006018700.1
COORDINATES: similar to AA sequence:RefSeq:WP_009179395.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820087.1
COORDINATES: similar to AA sequence:RefSeq:WP_018819483.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_009450595.1
COORDINATES: similar to AA sequence:RefSeq:WP_008033018.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF013460.2
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011749564.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008613283.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749562.1
COORDINATES: similar to AA sequence:RefSeq:WP_019086379.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007803272.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827206.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018065906.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827208.1
COORDINATES: similar to AA sequence:RefSeq:WP_019954138.1
COORDINATES: similar to AA sequence:RefSeq:WP_019954137.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859736.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820079.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999278.1
COORDINATES: similar to AA sequence:RefSeq:WP_006473457.1
IS1380-like element IS1247 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_015596585.1
GO:0005384 - manganese ion transmembrane transporter activity [Evidence IEA]
GO:0030026 - cellular manganese ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010396319.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612343.1
COORDINATES: similar to AA sequence:RefSeq:WP_011951120.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803217.1
COORDINATES: similar to AA sequence:RefSeq:WP_011907856.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612406.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803330.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007803328.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_011234839.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0050151 - oleate hydratase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018065899.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827215.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001791.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001792.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820070.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827042.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503866.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010400285.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335646.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121138.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187055.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_018327596.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001709.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840160.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015886785.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973012.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611976.1
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819616.1
sulfurtransferase/chromate resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819615.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003501591.1
COORDINATES: similar to AA sequence:RefSeq:WP_010659306.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010659307.1
COORDINATES: similar to AA sequence:RefSeq:WP_015242062.1
COORDINATES: protein motif:HMM:NF014708.2
COORDINATES: similar to AA sequence:RefSeq:WP_011910539.1
GO:0005451 - monovalent cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_002723156.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910537.1
monovalent cation/H+ antiporter subunit D
COORDINATES: similar to AA sequence:RefSeq:WP_011747609.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003600884.1
GO:0015075 - ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014197929.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_002720653.1
COORDINATES: similar to AA sequence:RefSeq:WP_010659276.1
COORDINATES: similar to AA sequence:RefSeq:WP_011338476.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012093423.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093422.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093421.1
COORDINATES: similar to AA sequence:RefSeq:WP_007199899.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012093419.1
COORDINATES: similar to AA sequence:RefSeq:WP_019644355.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633267.1
COORDINATES: similar to AA sequence:RefSeq:WP_019644354.1
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_011911084.1
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011911083.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018928.2
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:TIGR01843.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF024880.2
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_047389784.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910972.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450492.1
GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007826996.1
COORDINATES: similar to AA sequence:RefSeq:WP_020186173.1
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013651377.1
COORDINATES: protein motif:HMM:NF017773.2
COORDINATES: similar to AA sequence:RefSeq:WP_006174421.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450505.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016021 - integral component of membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
ribosome-associated ATPase/putative transporter RbbA
COORDINATES: similar to AA sequence:RefSeq:WP_006312415.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF012967.2
COORDINATES: protein motif:HMM:NF015437.2
autoinducer binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017140555.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331471.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331472.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_011331473.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_011331474.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_011331476.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331477.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331475.1
COORDINATES: protein motif:HMM:NF021213.2
COORDINATES: protein motif:HMM:NF021981.2
COORDINATES: protein motif:HMM:TIGR02743.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_011331482.1
COORDINATES: protein motif:HMM:TIGR02742.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: protein motif:HMM:NF018666.2
COORDINATES: protein motif:HMM:NF025105.2
COORDINATES: similar to AA sequence:RefSeq:WP_011339486.1
COORDINATES: similar to AA sequence:RefSeq:WP_008759165.1
COORDINATES: similar to AA sequence:RefSeq:WP_017140543.1
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012179948.1
COORDINATES: similar to AA sequence:RefSeq:WP_011836222.1
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR02686.1
COORDINATES: similar to AA sequence:RefSeq:WP_044248306.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_018009737.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065928.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803484.1
COORDINATES: protein motif:HMM:NF017528.2
COORDINATES: similar to AA sequence:RefSeq:WP_012975328.1
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_014531097.1
COORDINATES: similar to AA sequence:RefSeq:WP_007795776.1
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012403.2
COORDINATES: similar to AA sequence:RefSeq:WP_018065923.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065922.1