Gemmobacter fulva strain con5 plasmid p1, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Gemmobacter.
Submitted (01-JUN-2021) College of Biology and the Environment, Nanjing Forestry University, Longpan 59, Nanjing, Jiangsu 210000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP076362.1.\nBacteria and source DNA available from KCTC 82246.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/20/2022 07:36:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,524\nCDSs (total) :: 4,463\nGenes (coding) :: 4,393\nCDSs (with protein) :: 4,393\nGenes (RNA) :: 61\nrRNAs :: 3, 2, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 2, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 70\nCDSs (without protein) :: 70\nPseudo Genes (ambiguous residues) :: 0 of 70\nPseudo Genes (frameshifted) :: 18 of 70\nPseudo Genes (incomplete) :: 60 of 70\nPseudo Genes (internal stop) :: 6 of 70\nPseudo Genes (multiple problems) :: 12 of 70\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014879861.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF016693.2
COORDINATES: similar to AA sequence:RefSeq:WP_014874496.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_014874497.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_007813154.1
TMAO reductase system periplasmic protein TorT
COORDINATES: similar to AA sequence:RefSeq:WP_008281802.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000990.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008281804.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008034708.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011047287.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011749404.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_011579671.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011746561.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020179944.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011630447.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331291.1
COORDINATES: similar to AA sequence:RefSeq:WP_007797767.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011746654.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014530139.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011907856.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004429911.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397778.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001383.1
COORDINATES: similar to AA sequence:RefSeq:WP_016555319.1
COORDINATES: similar to AA sequence:RefSeq:WP_006468598.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012092769.1
COORDINATES: similar to AA sequence:RefSeq:WP_006468600.1
COORDINATES: similar to AA sequence:RefSeq:WP_004687151.1
COORDINATES: similar to AA sequence:RefSeq:WP_012092772.1
COORDINATES: similar to AA sequence:RefSeq:WP_015865588.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006472242.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010682870.1
COORDINATES: protein motif:HMM:NF013431.2
COORDINATES: similar to AA sequence:RefSeq:WP_018516766.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736809.1
COORDINATES: similar to AA sequence:RefSeq:WP_007801517.1
COORDINATES: similar to AA sequence:RefSeq:WP_007206955.1
COORDINATES: similar to AA sequence:RefSeq:WP_003505651.1
COORDINATES: similar to AA sequence:RefSeq:WP_002966346.1
COORDINATES: similar to AA sequence:RefSeq:WP_006700298.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271790.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007528825.1
COORDINATES: similar to AA sequence:RefSeq:WP_003528591.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271789.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011969499.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015243442.1
COORDINATES: similar to AA sequence:RefSeq:WP_015008629.1
COORDINATES: similar to AA sequence:RefSeq:WP_010975160.1
COORDINATES: similar to AA sequence:RefSeq:WP_008279564.1
COORDINATES: similar to AA sequence:RefSeq:WP_008279565.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973575.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950286.1
COORDINATES: similar to AA sequence:RefSeq:WP_020809098.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973573.1
COORDINATES: similar to AA sequence:RefSeq:WP_008207482.1
COORDINATES: similar to AA sequence:RefSeq:WP_002723340.1
COORDINATES: similar to AA sequence:RefSeq:WP_005610307.1
COORDINATES: protein motif:HMM:NF014273.2
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_012049158.1
COORDINATES: similar to AA sequence:RefSeq:WP_013652599.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]
bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011751306.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019644723.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751308.1
COORDINATES: similar to AA sequence:RefSeq:WP_009288485.1
COORDINATES: similar to AA sequence:RefSeq:WP_007008783.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751310.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751311.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751312.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751313.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751314.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_008891973.1
COORDINATES: similar to AA sequence:RefSeq:WP_008596566.1
COORDINATES: similar to AA sequence:RefSeq:WP_008560709.1
COORDINATES: protein motif:HMM:NF017262.2
GO:0016021 - integral component of membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF016149.2
COORDINATES: similar to AA sequence:RefSeq:WP_013653305.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011910865.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018988300.1
GO:0008959 - phosphate acetyltransferase activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010396021.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_010396019.1
GO:0050487 - sulfoacetaldehyde acetyltransferase activity [Evidence IEA]
GO:0019529 - taurine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016788102.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998123.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558186.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331270.1
COORDINATES: similar to AA sequence:RefSeq:WP_020681221.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747942.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017998127.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006191520.1
COORDINATES: similar to AA sequence:RefSeq:WP_018073558.1
COORDINATES: similar to AA sequence:RefSeq:WP_020397622.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020180425.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020180426.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013891936.1
Tm-1-like ATP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019578264.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012422.2
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007816407.1
HpcH/HpaI aldolase/citrate lyase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294547.1
GO:0018817 - 2-oxo-hept-3-ene-1,7-dioate hydratase activity [Evidence IEA]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_008228145.1
COORDINATES: similar to AA sequence:RefSeq:WP_002967138.1
GO:0008687 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase activity [Evidence IEA]
3,4-dihydroxyphenylacetate 2,3-dioxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_008228622.1
GO:0018480 - 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity [Evidence IEA]
GO:1901023 - 4-hydroxyphenylacetate catabolic process [Evidence IEA]
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008225664.1
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_007120035.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
homoprotocatechuate degradation operon regulator HpaR
COORDINATES: similar to AA sequence:RefSeq:WP_020288183.1
COORDINATES: similar to AA sequence:RefSeq:WP_020288182.1
COORDINATES: similar to AA sequence:RefSeq:WP_020288181.1
COORDINATES: similar to AA sequence:RefSeq:WP_020288180.1
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: similar to AA sequence:RefSeq:WP_012555531.1
COORDINATES: similar to AA sequence:RefSeq:WP_018855295.1
COORDINATES: protein motif:HMM:NF025878.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008027185.1
COORDINATES: similar to AA sequence:RefSeq:WP_012703269.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331355.1
COORDINATES: similar to AA sequence:RefSeq:WP_008027194.1
COORDINATES: similar to AA sequence:RefSeq:WP_011456631.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_018301016.1
COORDINATES: similar to AA sequence:RefSeq:WP_005856263.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019954122.1
GO:0003868 - 4-hydroxyphenylpyruvate dioxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018326293.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187208.1
COORDINATES: similar to AA sequence:RefSeq:WP_010437560.1
COORDINATES: similar to AA sequence:RefSeq:WP_005634507.1
GO:0004334 - fumarylacetoacetase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011539935.1
GO:0004411 - homogentisate 1,2-dioxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011539940.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007803091.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: protein motif:HMM:NF015445.2
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_011749728.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749729.1
COORDINATES: similar to AA sequence:RefSeq:WP_011484745.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749731.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008597427.1
COORDINATES: similar to AA sequence:RefSeq:WP_018045522.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_020296134.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017050.2
GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF008185.0
COORDINATES: protein motif:HMM:NF014664.2
GO:0051920 - peroxiredoxin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013166378.1
sugar ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: similar to AA sequence:RefSeq:WP_010327556.1
COORDINATES: similar to AA sequence:RefSeq:WP_012427590.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_008192952.1
COORDINATES: similar to AA sequence:RefSeq:WP_019170263.1
COORDINATES: similar to AA sequence:RefSeq:WP_018719603.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_018008756.1
COORDINATES: similar to AA sequence:RefSeq:WP_006280397.1
COORDINATES: similar to AA sequence:RefSeq:WP_004979232.1
COORDINATES: protein motif:HMM:NF014758.2
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_015316330.1
COORDINATES: protein motif:HMM:NF013134.2
COORDINATES: similar to AA sequence:RefSeq:WP_006417137.1
COORDINATES: protein motif:HMM:NF018717.2
COORDINATES: similar to AA sequence:RefSeq:WP_008028651.1
COORDINATES: similar to AA sequence:RefSeq:WP_004885370.1
COORDINATES: similar to AA sequence:RefSeq:WP_011389799.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577020.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577022.1
COORDINATES: similar to AA sequence:RefSeq:WP_020397624.1
COORDINATES: similar to AA sequence:RefSeq:WP_004687624.1
COORDINATES: similar to AA sequence:RefSeq:WP_008523106.1
COORDINATES: similar to AA sequence:RefSeq:WP_003516887.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020293087.1
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013575488.1
COORDINATES: similar to AA sequence:RefSeq:WP_018099103.1
COORDINATES: similar to AA sequence:RefSeq:WP_017276001.1
COORDINATES: similar to AA sequence:RefSeq:WP_018099101.1
COORDINATES: similar to AA sequence:RefSeq:WP_009490384.1
COORDINATES: similar to AA sequence:RefSeq:WP_018095780.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_007007179.1
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007703294.1
COORDINATES: similar to AA sequence:RefSeq:WP_016556796.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018096478.1
COORDINATES: similar to AA sequence:RefSeq:WP_008281990.1
COORDINATES: similar to AA sequence:RefSeq:WP_019461949.1
GO:0018850 - chloromuconate cycloisomerase activity [Evidence IEA]; GO:0018849 - muconate cycloisomerase activity [Evidence IEA]
muconate/chloromuconate family cycloisomerase
COORDINATES: similar to AA sequence:RefSeq:WP_018634434.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008121671.1
COORDINATES: similar to AA sequence:RefSeq:WP_018634436.1
GO:0047570 - 3-oxoadipate enol-lactonase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013168448.1
COORDINATES: similar to AA sequence:RefSeq:WP_009570894.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566736.1
COORDINATES: similar to AA sequence:RefSeq:WP_007439270.1
COORDINATES: similar to AA sequence:RefSeq:WP_009572684.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633651.1
COORDINATES: similar to AA sequence:RefSeq:WP_019962928.1
COORDINATES: similar to AA sequence:RefSeq:WP_019962927.1
COORDINATES: similar to AA sequence:RefSeq:WP_019962926.1
COORDINATES: similar to AA sequence:RefSeq:WP_008226434.1
COORDINATES: similar to AA sequence:RefSeq:WP_013382870.1
sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018633650.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807802.1
GO:0047575 - 4-carboxymuconolactone decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008885168.1
GO:0018578 - protocatechuate 3,4-dioxygenase activity [Evidence IEA]
GO:0046278 - 3,4-dihydroxybenzoate metabolic process [Evidence IEA]
protocatechuate 3,4-dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008557320.1
protocatechuate 3,4-dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_008885299.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_008203685.1
COORDINATES: similar to AA sequence:RefSeq:WP_020085998.1
COORDINATES: similar to AA sequence:RefSeq:WP_004252811.1
COORDINATES: similar to AA sequence:RefSeq:WP_009285972.1
COORDINATES: similar to AA sequence:RefSeq:WP_017929063.1
COORDINATES: similar to AA sequence:RefSeq:WP_010628744.1
COORDINATES: similar to AA sequence:RefSeq:WP_012456429.1
COORDINATES: similar to AA sequence:RefSeq:WP_018646893.1
COORDINATES: similar to AA sequence:RefSeq:WP_003516945.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_003516944.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397127.1
COORDINATES: similar to AA sequence:RefSeq:WP_003492157.1
COORDINATES: similar to AA sequence:RefSeq:WP_019653430.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397121.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330729.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071376.1
COORDINATES: similar to AA sequence:RefSeq:WP_006579288.1
COORDINATES: similar to AA sequence:RefSeq:WP_004632555.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396033.1
COORDINATES: similar to AA sequence:RefSeq:WP_008493250.1
COORDINATES: similar to AA sequence:RefSeq:WP_014972899.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396040.1
COORDINATES: similar to AA sequence:RefSeq:WP_011539368.1
GO:0033739 - preQ1 synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019295559.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008557807.1
6-pyruvoyl tetrahydropterin synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007120212.1
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018000987.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009796735.1
GO:0004015 - adenosylmethionine-8-amino-7-oxononanoate transaminase activity [Evidence IEA]
GO:0009102 - biotin biosynthetic process [Evidence IEA]
adenosylmethionine--8-amino-7-oxononanoate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_016921171.1
GO:0004141 - dethiobiotin synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011952097.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_018000983.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004076 - biotin synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019410449.1
COORDINATES: protein motif:HMM:NF012686.2
COORDINATES: similar to AA sequence:RefSeq:WP_016841200.1
COORDINATES: similar to AA sequence:RefSeq:WP_018388272.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_002718857.1
COORDINATES: similar to AA sequence:RefSeq:WP_015242537.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_019403446.1
cbb3-type cytochrome c oxidase subunit 3
COORDINATES: similar to AA sequence:RefSeq:WP_019198785.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_009819776.1
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_009819775.1
COORDINATES: similar to AA sequence:RefSeq:WP_009573820.1
COORDINATES: similar to AA sequence:RefSeq:WP_009573819.1
GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018294.2
COORDINATES: similar to AA sequence:RefSeq:WP_007425336.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013845093.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006520 - cellular amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009464706.1
COORDINATES: similar to AA sequence:RefSeq:WP_020050603.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010400173.1
COORDINATES: similar to AA sequence:RefSeq:WP_019953430.1
COORDINATES: similar to AA sequence:RefSeq:WP_008208958.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518913.1
COORDINATES: similar to AA sequence:RefSeq:WP_006933897.1
COORDINATES: similar to AA sequence:RefSeq:WP_003593662.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989704.1
COORDINATES: similar to AA sequence:RefSeq:WP_015242190.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518141.1
COORDINATES: similar to AA sequence:RefSeq:WP_018494278.1
COORDINATES: similar to AA sequence:RefSeq:WP_018610014.1
COORDINATES: similar to AA sequence:RefSeq:WP_005856749.1
COORDINATES: similar to AA sequence:RefSeq:WP_011623359.1
GO:0004505 - phenylalanine 4-monooxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010398137.1
GO:0008124 - 4-alpha-hydroxytetrahydrobiopterin dehydratase activity [Evidence IEA]
GO:0006729 - tetrahydrobiopterin biosynthetic process [Evidence IEA]
4a-hydroxytetrahydrobiopterin dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_013528147.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011046321.1
trimethylamine methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008874105.1
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009574191.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009542240.1
COORDINATES: similar to AA sequence:RefSeq:WP_008945523.1
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: similar to AA sequence:RefSeq:WP_009884327.1
COORDINATES: similar to AA sequence:RefSeq:WP_017508578.1
COORDINATES: similar to AA sequence:RefSeq:WP_010629376.1
COORDINATES: similar to AA sequence:RefSeq:WP_008143242.1
COORDINATES: similar to AA sequence:RefSeq:WP_012584438.1
COORDINATES: protein motif:HMM:NF028177.2
GO:0047869 - dimethylpropiothetin dethiomethylase activity [Evidence IEA]
dimethylsulfonioproprionate lyase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018063383.1
COORDINATES: similar to AA sequence:RefSeq:WP_009076854.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018063381.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018063380.1
COORDINATES: similar to AA sequence:RefSeq:WP_005157511.1
COORDINATES: similar to AA sequence:RefSeq:WP_008952614.1
GO:0008812 - choline dehydrogenase activity [Evidence IEA]
GO:0019285 - glycine betaine biosynthetic process from choline [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020680897.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018238084.1
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_018238086.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815052.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706520.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999260.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999259.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982645.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999258.1
GO:0050421 - nitrite reductase (NO-forming) activity [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015722.2
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_017999256.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006468366.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013065994.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999255.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000759.1
cytochrome C oxidase subunit IV family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018000760.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000761.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000762.1
COORDINATES: similar to AA sequence:RefSeq:WP_013651337.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_003113238.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000765.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394578.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750971.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394582.1
COORDINATES: similar to AA sequence:RefSeq:WP_010440537.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097218.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556340.1
COORDINATES: similar to AA sequence:RefSeq:WP_013897021.1
COORDINATES: similar to AA sequence:RefSeq:WP_018326651.1
COORDINATES: similar to AA sequence:RefSeq:WP_018446106.1
COORDINATES: similar to AA sequence:RefSeq:YP_004994973.1
COORDINATES: similar to AA sequence:RefSeq:WP_014762023.1
COORDINATES: similar to AA sequence:RefSeq:WP_014880425.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634950.1
COORDINATES: similar to AA sequence:RefSeq:WP_004124230.1
COORDINATES: similar to AA sequence:RefSeq:WP_004928637.1
COORDINATES: similar to AA sequence:RefSeq:WP_018329909.1
Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003535419.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974683.1
COORDINATES: similar to AA sequence:RefSeq:WP_009817414.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140756.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140755.1
COORDINATES: similar to AA sequence:RefSeq:WP_007801514.1
COORDINATES: similar to AA sequence:RefSeq:WP_017277393.1
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF019236.2
COORDINATES: protein motif:HMM:NF014453.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:TIGR01536.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF019350.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03865.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008884418.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010394429.1
quinoprotein dehydrogenase-associated SoxYZ-like carrier
COORDINATES: similar to AA sequence:RefSeq:WP_013067122.1
quinoprotein relay system zinc metallohydrolase 1
COORDINATES: similar to AA sequence:RefSeq:WP_010953598.1
PQQ-dependent methanol/ethanol family dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_010394422.1
COORDINATES: protein motif:HMM:NF018431.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010449677.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_011495560.1
COORDINATES: similar to AA sequence:RefSeq:WP_013123633.1
COORDINATES: similar to AA sequence:RefSeq:WP_014881828.1
crotonase/enoyl-CoA hydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016846707.1
COORDINATES: similar to AA sequence:RefSeq:WP_019466873.1
COORDINATES: similar to AA sequence:RefSeq:WP_007355958.1
COORDINATES: similar to AA sequence:RefSeq:WP_010628137.1
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008837316.1
COORDINATES: similar to AA sequence:RefSeq:WP_008837315.1
GO:0008697 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
5-dehydro-4-deoxy-D-glucuronate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_007771788.1
COORDINATES: similar to AA sequence:RefSeq:WP_018062885.1
COORDINATES: similar to AA sequence:RefSeq:WP_007529335.1
COORDINATES: similar to AA sequence:RefSeq:WP_018301292.1
COORDINATES: similar to AA sequence:RefSeq:WP_007529331.1
COORDINATES: similar to AA sequence:RefSeq:WP_011575334.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: similar to AA sequence:RefSeq:WP_018301026.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910709.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568096.1
COORDINATES: similar to AA sequence:RefSeq:WP_013069258.1
COORDINATES: similar to AA sequence:RefSeq:WP_008143084.1
COORDINATES: protein motif:HMM:NF016535.2
COORDINATES: similar to AA sequence:RefSeq:WP_014249639.1
COORDINATES: similar to AA sequence:RefSeq:WP_007112257.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009820102.1
COORDINATES: similar to AA sequence:RefSeq:WP_013629522.1
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011811286.1
COORDINATES: similar to AA sequence:RefSeq:WP_004125314.1
COORDINATES: similar to AA sequence:RefSeq:WP_018859180.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748017.1
COORDINATES: similar to AA sequence:RefSeq:WP_010395493.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748015.1
COORDINATES: similar to AA sequence:RefSeq:WP_009491423.1
COORDINATES: similar to AA sequence:RefSeq:WP_011841556.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_011750993.1
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_017994522.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342539.1
COORDINATES: similar to AA sequence:RefSeq:WP_014874477.1
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020486099.1
COORDINATES: similar to AA sequence:RefSeq:WP_014879847.1
COORDINATES: similar to AA sequence:RefSeq:WP_005643333.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_005640360.1
COORDINATES: similar to AA sequence:RefSeq:WP_014874487.1
COORDINATES: similar to AA sequence:RefSeq:WP_014879856.1
COORDINATES: protein motif:HMM:NF020134.2
COORDINATES: similar to AA sequence:RefSeq:WP_014879858.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014879859.1
COORDINATES: similar to AA sequence:RefSeq:WP_014874492.1