Enterococcus innesii strain DB-1 plasmid pEIDB1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.
Complete genome sequence of Enterococcus innesii DB-1
Submitted (06-MAR-2022) Contact:Daisuke Fukuda GlaxoSmithKline; Kamiooka higashi 2-43-21, Konan-ku, Yokohama 233-0001, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP025636.1.\nAnnotated by DFAST https://dfast.ddbj.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.9\nGenome Coverage :: 150x\nSequencing Technology :: PacBio Sequel IIe\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/21/2023 05:35:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,377\nCDSs (total) :: 3,297\nGenes (coding) :: 3,289\nCDSs (with protein) :: 3,289\nGenes (RNA) :: 80\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 8\nCDSs (without protein) :: 8\nPseudo Genes (ambiguous residues) :: 0 of 8\nPseudo Genes (frameshifted) :: 4 of 8\nPseudo Genes (incomplete) :: 4 of 8\nPseudo Genes (internal stop) :: 2 of 8\nPseudo Genes (multiple problems) :: 2 of 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002341367.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016612337.1
COORDINATES: similar to AA sequence:RefSeq:WP_005230844.1
COORDINATES: similar to AA sequence:RefSeq:WP_005230842.1
COORDINATES: similar to AA sequence:RefSeq:WP_016612340.1
COORDINATES: similar to AA sequence:RefSeq:WP_010749193.1
COORDINATES: similar to AA sequence:RefSeq:WP_005230828.1
COORDINATES: similar to AA sequence:RefSeq:WP_010749191.1
COORDINATES: similar to AA sequence:RefSeq:WP_016612344.1
COORDINATES: similar to AA sequence:RefSeq:WP_016612345.1
COORDINATES: similar to AA sequence:RefSeq:WP_005230821.1
COORDINATES: similar to AA sequence:RefSeq:WP_016612346.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005230816.1
COORDINATES: similar to AA sequence:RefSeq:WP_010749187.1
COORDINATES: similar to AA sequence:RefSeq:WP_005230814.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005230810.1
COORDINATES: similar to AA sequence:RefSeq:WP_005230809.1
COORDINATES: similar to AA sequence:RefSeq:WP_005230808.1
COORDINATES: similar to AA sequence:RefSeq:WP_005230807.1
COORDINATES: similar to AA sequence:RefSeq:WP_010749181.1
COORDINATES: similar to AA sequence:RefSeq:WP_010749180.1
COORDINATES: similar to AA sequence:RefSeq:WP_010749179.1
COORDINATES: similar to AA sequence:RefSeq:WP_016612357.1
COORDINATES: similar to AA sequence:RefSeq:WP_016612358.1
COORDINATES: similar to AA sequence:RefSeq:WP_010749176.1
COORDINATES: similar to AA sequence:RefSeq:WP_010749175.1
COORDINATES: similar to AA sequence:RefSeq:WP_016612360.1
SpaA isopeptide-forming pilin-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_010749173.1
COORDINATES: similar to AA sequence:RefSeq:WP_005230783.1
COORDINATES: similar to AA sequence:RefSeq:WP_005230893.1
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016612369.1
COORDINATES: similar to AA sequence:RefSeq:WP_002333827.1
COORDINATES: similar to AA sequence:RefSeq:WP_010782321.1
primase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008381197.1
COORDINATES: similar to AA sequence:RefSeq:WP_002335394.1
COORDINATES: similar to AA sequence:RefSeq:WP_005230876.1
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015508839.1
COORDINATES: similar to AA sequence:RefSeq:WP_016619633.1
GO:0009986 - cell surface [Evidence IEA]
LPXTG cell wall anchor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002372546.1
COORDINATES: similar to AA sequence:RefSeq:WP_016619634.1
COORDINATES: similar to AA sequence:RefSeq:WP_005232357.1
COORDINATES: similar to AA sequence:RefSeq:WP_008376254.1
DUF916 and DUF3324 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016611452.1
COORDINATES: similar to AA sequence:RefSeq:WP_016611451.1
COORDINATES: similar to AA sequence:RefSeq:WP_005470089.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016609795.1
transcriptional regulator, BlaI/MecI/CopY family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010762110.1
COORDINATES: similar to AA sequence:RefSeq:WP_011677171.1
COORDINATES: protein motif:HMM:NF022432.2
COORDINATES: similar to AA sequence:RefSeq:WP_005232001.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008378052.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005231999.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010748826.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003018693.1
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010748156.1
COORDINATES: similar to AA sequence:RefSeq:WP_010748155.1
COORDINATES: similar to AA sequence:RefSeq:WP_002383137.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016622830.1
COORDINATES: similar to AA sequence:RefSeq:WP_002340526.1
COORDINATES: similar to AA sequence:RefSeq:WP_016627749.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003733618.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012952176.1
COORDINATES: protein motif:HMM:NF014566.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_008381306.1
COORDINATES: similar to AA sequence:RefSeq:WP_010748130.1
COORDINATES: similar to AA sequence:RefSeq:WP_005230857.1
COORDINATES: similar to AA sequence:RefSeq:WP_010748128.1
COORDINATES: similar to AA sequence:RefSeq:WP_002295613.1
COORDINATES: similar to AA sequence:RefSeq:WP_005233105.1
COORDINATES: similar to AA sequence:RefSeq:WP_005233104.1
COORDINATES: similar to AA sequence:RefSeq:WP_016612328.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015510573.1
COORDINATES: similar to AA sequence:RefSeq:WP_002290539.1
COORDINATES: similar to AA sequence:RefSeq:WP_016612332.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016249872.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005230852.1
COORDINATES: protein motif:HMM:NF024554.2