Anolis carolinensis linkage group h, AnoCar2.0, whole genome shotgun sequence.
type: Entry
definition: Anolis carolinensis linkage group h, AnoCar2.0, whole genome shotgun sequence.
sequence version: NC_014788.1
sequence date: 2016-05-31
sequence: sequence
division: CON
label: NC_014788.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA60547
dblink: SAMN02981230
keyword: WGS
keyword: RefSeq
source: Anolis carolinensis (green anole)
organism: Anolis carolinensis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM000949.1.\nAssembly Name: AnoCar2.0\nThe genomic sequence for this RefSeq record is from the whole\ngenome assembly released by the Broad Institute as AnoCar2.0 in\nDecember 2009 (see http://www.broadinstitute.org/models/anole). The\noriginal whole genome shotgun project has the accession\nAAWZ00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Arachne v. 3.0.0\nAssembly Name :: AnoCar2.0\nGenome Coverage :: 7.10x\nSequencing Technology :: ABI\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Version :: Anolis carolinensis Annotation\n Release 102\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 7.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000018
sequence length: 248369
topology: linear
so has quality: SO_0000987
location: 1..248369
location: region:1-248369:1
RO_0002162: 28377

NC_014788
type: RefSeq
SIO_000068: refseq

PRJNA60547
type: BioProject
SIO_000068: bioproject

SAMN02981230
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248369:1
position: 248369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-248369:1:source
so part of: sequence
organism: Anolis carolinensis
mol type: genomic DNA
country: USA
linkage group: h

28377
type: Taxonomy
SIO_000068: taxonomy

tmem201
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: tmem201
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <5318..12083
location: region:5318-12083:1
so has part: feature:5318-12083:1:exon
subclass of: SO_0000010

100568054
type: Gene
SIO_000068: ncbigene

position:5318:1
position: 5318
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:12083:1
position: 12083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5318-12083:1:exon

tmem201
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: tmem201
product: transmembrane protein 201
inference: similar to RNA sequence, mRNA (same species):INSD:GAFM01035868.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1403 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_008113627.2
SIO_010081: tmem201
subclass of: SO_0000673
so part of: tmem201
location: join(<5318..5547,7657..7728,8781..9059,9316..9447,10736..12083)
location: region:5318-12083:1
so has part: feature:5318-5547:1:exon
so has part: feature:7657-7728:1:exon
so has part: feature:8781-9059:1:exon
so has part: feature:9316-9447:1:exon
so has part: feature:10736-12083:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5318-5547:1:exon

position:5547:1
position: 5547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7657-7728:1:exon

position:7657:1
position: 7657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7728:1
position: 7728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8781-9059:1:exon

position:8781:1
position: 8781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9059:1
position: 9059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9316-9447:1:exon

position:9316:1
position: 9316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9447:1
position: 9447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:10736-12083:1:exon

position:10736:1
position: 10736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tmem201
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: tmem201
inference: similar to RNA sequence, mRNA (same species):INSD:GAFM01035868.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 1214 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 2
product: transmembrane protein 201
translation: MEAVGAALGGFPAAGLAGGIGFGVTACAAAGGAWLYHAARRRKPTHMTVNCWFCSQDTVVPYGNRNCWDCPNCEQYNGFQENGDYNKPIPAQYMEHLNHVISGTGPPCDPSRPQQWVSSQVLLCKRCNNHQTTKIKQLASFTPREEGKYDEEIEVYKHHLEQTYKLCRPCQAAVEYYIKHQNRQLRALLLRHHFSHRKADKTYMQSFYTAASSSSSTTPFQVVALRFLAFLVCAVLLFMASCGSGNPFAPEPAATAPPSPTSAKNRTGEGSATVTSSNNGTLLDFLRWQEVMRLLPEGAVEALGAAWCYGKNHQTAVVVFGLMTCFLAMLLAGRIRLRRIDAFASVLWLLVMGFHLAETYLQADPPTWMDTAKFGTTSLCCLVGFAAAVATRKPAAGQRRPRPRRYLSGDPIPIPLDGGAELSFVFPPPLPSPTAFFPARPCALPFAPPLFRSPRRTSSSSLPGRLNRALSLGTTPSLARTDSGYLFSGSRPPSQMSFSKESPTSEYFSLLSGSCLPSPVPSPAPSVAGSVASSSGSLRYRRPLISPARLNLKGQRLMLFSAQNGVPSGEDFAPSESHGFASDVPAFPKRNHIEREMHDTRAVLEAGSLCSEGSAKKTDNSSHGSSCVVDTTTNGEESPGWKGRVGCWSVRGLLAVSLTLNAVFTSAFLYRSLR
SIO_010081: tmem201
subclass of: SO_0000673
so part of: tmem201
location: join(<5318..5547,7657..7728,8781..9059,9316..9447,10736..10833)
location: region:5318-10833:1
so has part: feature:5318-5547:1:exon
so has part: feature:7657-7728:1:exon
so has part: feature:8781-9059:1:exon
so has part: feature:9316-9447:1:exon
so has part: feature:10736-10833:1:exon

XP_008111834.1
type: Protein
SIO_000068: ncbiprotein

position:10833:1
position: 10833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5318-5547:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7657-7728:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8781-9059:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9316-9447:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10736-10833:1:exon

LOC103279284
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: LOC103279284
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7625..7986)
location: region:7625-7986:-1
so has part: feature:7625-7986:-1:exon
subclass of: SO_0000011

103279284
type: Gene
SIO_000068: ncbigene

position:7625:-1
position: 7625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7986:-1
position: 7986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7625-7986:-1:exon

LOC103279284
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 28377
nc RNA class: lncRNA
gene: LOC103279284
product: uncharacterized LOC103279284
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_506678.1
SIO_010081: LOC103279284
subclass of: SO_0000673
so part of: LOC103279284
location: complement(join(7625..7719,7945..7986))
location: region:7625-7986:-1
so has part: feature:7945-7986:-1:exon
so has part: feature:7625-7719:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7945-7986:-1:exon

position:7945:-1
position: 7945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7625-7719:-1:exon

position:7719:-1
position: 7719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC103279286
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: LOC103279286
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 20997..22153
location: region:20997-22153:1
so has part: feature:20997-22153:1:exon
subclass of: SO_0000010

103279286
type: Gene
SIO_000068: ncbigene

position:20997:1
position: 20997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22153:1
position: 22153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20997-22153:1:exon

LOC103279286
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: LOC103279286
product: forkhead box protein E3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_008113629.2
SIO_010081: LOC103279286
subclass of: SO_0000673
so part of: LOC103279286
location: 20997..22153
location: region:20997-22153:1
so has part: feature:20997-22153:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20997-22153:1:exon

LOC103279286
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: LOC103279286
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: forkhead box protein E3-like
translation: MHLTCLSFTSRCERMEKGDGEASSGGEGEWKRPPYSYAALIAMALEGSPEGCLPLKAIYQAISARFPFFRLSQKGWQNSVRHNLSLNACFIRTPREKGHGKGSLWALDPAYRGMFEGGRFRRQRRRPNQRPPYDPPPPPPPVHPDSHPGPPYFLPAPPQPYFFPASPPMSASQPYYTSYPRLLHPGGGQPFIPEGSFLPQWNWQEGPHSHLSHYP
SIO_010081: LOC103279286
subclass of: SO_0000673
so part of: LOC103279286
location: 21052..21699
location: region:21052-21699:1
so has part: feature:21052-21699:1:exon

XP_008111836.1
type: Protein
SIO_000068: ncbiprotein

position:21052:1
position: 21052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21699:1
position: 21699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21052-21699:1:exon

pik3cd
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: pik3cd
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 25592..134221
location: region:25592-134221:1
so has part: feature:25592-134221:1:exon
subclass of: SO_0000010

100568252
type: Gene
SIO_000068: ncbigene

position:25592:1
position: 25592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:134221:1
position: 134221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25592-134221:1:exon

pik3cd
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 28377
gene: pik3cd
product: phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta, transcript variant X3
inference: similar to RNA sequence, mRNA (same species):INSD:GAED01067778.1
exception: annotated by transcript or proteomic data
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_001730493.1
SIO_010081: pik3cd
so part of: pik3cd
location: join(25592..25936,43576..43739,52876..53104,57436..57668,62014..62193,63305..63454,64991..65080,68234..68455,72003..72099,72211..72341,73875..73934,75257..75424,75523..75644,79164..>79307,<83117..83295,85282..85391,88736..88814,90093..90260,92702..92825,94803..94948,96104..96236,98636..98902,134109..134221)
location: region:25592-134221:1
so has part: feature:25592-25936:1:exon
so has part: feature:43576-43739:1:exon
so has part: feature:52876-53104:1:exon
so has part: feature:57436-57668:1:exon
so has part: feature:62014-62193:1:exon
so has part: feature:63305-63454:1:exon
so has part: feature:64991-65080:1:exon
so has part: feature:68234-68455:1:exon
so has part: feature:72003-72099:1:exon
so has part: feature:72211-72341:1:exon
so has part: feature:73875-73934:1:exon
so has part: feature:75257-75424:1:exon
so has part: feature:75523-75644:1:exon
so has part: feature:79164-79307:1:exon
so has part: feature:83117-83295:1:exon
so has part: feature:85282-85391:1:exon
so has part: feature:88736-88814:1:exon
so has part: feature:90093-90260:1:exon
so has part: feature:92702-92825:1:exon
so has part: feature:94803-94948:1:exon
so has part: feature:96104-96236:1:exon
so has part: feature:98636-98902:1:exon
so has part: feature:134109-134221:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25592-25936:1:exon

position:25936:1
position: 25936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:43576-43739:1:exon

position:43576:1
position: 43576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43739:1
position: 43739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:52876-53104:1:exon

position:52876:1
position: 52876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53104:1
position: 53104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:57436-57668:1:exon

position:57436:1
position: 57436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57668:1
position: 57668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:62014-62193:1:exon

position:62014:1
position: 62014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:62193:1
position: 62193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:63305-63454:1:exon

position:63305:1
position: 63305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63454:1
position: 63454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:64991-65080:1:exon

position:64991:1
position: 64991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65080:1
position: 65080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:68234-68455:1:exon

position:68234:1
position: 68234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68455:1
position: 68455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:72003-72099:1:exon

position:72003:1
position: 72003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72099:1
position: 72099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:72211-72341:1:exon

position:72211:1
position: 72211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72341:1
position: 72341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:73875-73934:1:exon

position:73875:1
position: 73875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73934:1
position: 73934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:75257-75424:1:exon

position:75257:1
position: 75257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75424:1
position: 75424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:75523-75644:1:exon

position:75523:1
position: 75523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75644:1
position: 75644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:79164-79307:1:exon

position:79164:1
position: 79164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79307:1
position: 79307
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 15
SIO_000628: feature:83117-83295:1:exon

position:83117:1
position: 83117
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:83295:1
position: 83295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:85282-85391:1:exon

position:85282:1
position: 85282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85391:1
position: 85391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:88736-88814:1:exon

position:88736:1
position: 88736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88814:1
position: 88814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:90093-90260:1:exon

position:90093:1
position: 90093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90260:1
position: 90260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:92702-92825:1:exon

position:92702:1
position: 92702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:92825:1
position: 92825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:94803-94948:1:exon

position:94803:1
position: 94803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94948:1
position: 94948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:96104-96236:1:exon

position:96104:1
position: 96104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:96236:1
position: 96236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:98636-98902:1:exon

position:98636:1
position: 98636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:98902:1
position: 98902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:134109-134221:1:exon

position:134109:1
position: 134109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

pik3cd
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: pik3cd
product: phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta, transcript variant X1
inference: similar to RNA sequence, mRNA (same species):INSD:GAED01067778.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 100 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_008113631.2
SIO_010081: pik3cd
subclass of: SO_0000673
so part of: pik3cd
location: join(25592..25936,43576..43739,52876..53104,57436..57668,62014..62193,63305..63454,64991..65080,68234..68455,72003..72099,72211..72341,73875..73934,75257..75424,75523..75644,79164..>79307,<83117..83295,85282..85391,88736..88814,90093..90260,92702..92825,94803..94948,96104..96236,98636..99012)
location: region:25592-99012:1
so has part: feature:25592-25936:1:exon
so has part: feature:43576-43739:1:exon
so has part: feature:52876-53104:1:exon
so has part: feature:57436-57668:1:exon
so has part: feature:62014-62193:1:exon
so has part: feature:63305-63454:1:exon
so has part: feature:64991-65080:1:exon
so has part: feature:68234-68455:1:exon
so has part: feature:72003-72099:1:exon
so has part: feature:72211-72341:1:exon
so has part: feature:73875-73934:1:exon
so has part: feature:75257-75424:1:exon
so has part: feature:75523-75644:1:exon
so has part: feature:79164-79307:1:exon
so has part: feature:83117-83295:1:exon
so has part: feature:85282-85391:1:exon
so has part: feature:88736-88814:1:exon
so has part: feature:90093-90260:1:exon
so has part: feature:92702-92825:1:exon
so has part: feature:94803-94948:1:exon
so has part: feature:96104-96236:1:exon
so has part: feature:98636-99012:1:exon

position:99012:1
position: 99012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25592-25936:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:43576-43739:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52876-53104:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:57436-57668:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:62014-62193:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:63305-63454:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64991-65080:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:68234-68455:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:72003-72099:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:72211-72341:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:73875-73934:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:75257-75424:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:75523-75644:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:79164-79307:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:83117-83295:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:85282-85391:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:88736-88814:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:90093-90260:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:92702-92825:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:94803-94948:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:96104-96236:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:98636-99012:1:exon

pik3cd
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: pik3cd
product: phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta, transcript variant X2
inference: similar to RNA sequence, mRNA (same species):INSD:GAED01067778.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 100 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_016994826.1
SIO_010081: pik3cd
subclass of: SO_0000673
so part of: pik3cd
location: join(42614..43291,43576..43739,52876..53104,57436..57668,62014..62193,63305..63454,64991..65080,68234..68455,72003..72099,72211..72341,73875..73934,75257..75424,75523..75644,79164..>79307,<83117..83295,85282..85391,88736..88814,90093..90260,92702..92825,94803..94948,96104..96236,98636..99012)
location: region:42614-99012:1
so has part: feature:42614-43291:1:exon
so has part: feature:43576-43739:1:exon
so has part: feature:52876-53104:1:exon
so has part: feature:57436-57668:1:exon
so has part: feature:62014-62193:1:exon
so has part: feature:63305-63454:1:exon
so has part: feature:64991-65080:1:exon
so has part: feature:68234-68455:1:exon
so has part: feature:72003-72099:1:exon
so has part: feature:72211-72341:1:exon
so has part: feature:73875-73934:1:exon
so has part: feature:75257-75424:1:exon
so has part: feature:75523-75644:1:exon
so has part: feature:79164-79307:1:exon
so has part: feature:83117-83295:1:exon
so has part: feature:85282-85391:1:exon
so has part: feature:88736-88814:1:exon
so has part: feature:90093-90260:1:exon
so has part: feature:92702-92825:1:exon
so has part: feature:94803-94948:1:exon
so has part: feature:96104-96236:1:exon
so has part: feature:98636-99012:1:exon

position:42614:1
position: 42614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42614-43291:1:exon

position:43291:1
position: 43291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:43576-43739:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52876-53104:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:57436-57668:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:62014-62193:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:63305-63454:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64991-65080:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:68234-68455:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:72003-72099:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:72211-72341:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:73875-73934:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:75257-75424:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:75523-75644:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:79164-79307:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:83117-83295:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:85282-85391:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:88736-88814:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:90093-90260:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:92702-92825:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:94803-94948:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:96104-96236:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:98636-99012:1:exon

pik3cd
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: pik3cd
inference: similar to RNA sequence, mRNA (same species):INSD:GAED01067778.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 100 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform
translation: MLPGIYCPVEFWSKEANQSIQVDFLLPTGIYLTLSVSCNATLGTIKQLVWHHAQCEPFFHMLSDPESYVFTCINQTAERQELEDEQRRLCDIQPFLPVLRLVAREGDRVKKLISSQISLLIGKGLHEFDSLGDLEVDDFRVKMQHFCEERAARRQQLSWKAWMEYSFPVQLEPLANGLGGRSLLQFPNKNIFVNVKFESGGESFTFQISPKEYPATLMSYAIKKQATVFRHQKINSPEDYALQINGKYEYLYGNHPLYQFQYIRDCLCRGLLPHLTMVHASSISALWEEQTNGISYPIKAASKAPPVPKKKPMSVSLWSLEQPYSIELVQGSKVNADERMKLVVQAGLYHGHEMLCKMVSSSEVSVCSEPVWGQRLEFEINVCDLPRMARLCLALYAVVEKAKKARSTKKKSKKADCPIAWVNVMLFDFRDQLKTGECCLPMWSSFPDEKGELLNPMGTVQTNPNTESAASLVIRFPTISSNPLYYPTFEQILEQGKNGQSSFSMVEDPEEKQQLKEILERRSHTDLYEHEKDLVWKMRHQIRDQFPHALAKLLVVTKWNKHEDVAQMIYLLQSWPELPVLNALELLDFSFPDRYVGAFTVNSLKKLTDADLFQYLLQLVQVLKYESYLDCELTKFLLGRALSNRKIGHFLFWHLRSEMHVPSVALRFGLILEAYCRGSTFHMKALMKQTESLNKMKALNDLIKASSQKNAKPQTKEFMHTCMRQETYLEALSNLQSPLNPSVILAKVSVELCTFMDSKMKPLWIVFNNEDAGGGHVGVIFKNGDDLRQDMLTLQMIQLMDILWKKEGLDLRMTPYGCLSTGDKTGLIEVVMDSDTIANIQLNKSNMAATAAFNKDALLNWLKSKNPGDALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRENGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFREYCERAYMILRCHGLLFLHLFALMKAAGLPELSCSKDIQYLKDSLALGKTDEEARRHFQLKFNEALRESWKTKVNWLAHNVSKDNRQ
SIO_010081: pik3cd
subclass of: SO_0000673
so part of: pik3cd
location: join(43599..43739,52876..53104,57436..57668,62014..62193,63305..63454,64991..65080,68234..68455,72003..72099,72211..72341,73875..73934,75257..75424,75523..75644,79164..>79307,<83117..83295,85282..85391,88736..88814,90093..90260,92702..92825,94803..94948,96104..96236,98636..98773)
location: region:43599-98773:1
so has part: feature:43599-43739:1:exon
so has part: feature:52876-53104:1:exon
so has part: feature:57436-57668:1:exon
so has part: feature:62014-62193:1:exon
so has part: feature:63305-63454:1:exon
so has part: feature:64991-65080:1:exon
so has part: feature:68234-68455:1:exon
so has part: feature:72003-72099:1:exon
so has part: feature:72211-72341:1:exon
so has part: feature:73875-73934:1:exon
so has part: feature:75257-75424:1:exon
so has part: feature:75523-75644:1:exon
so has part: feature:79164-79307:1:exon
so has part: feature:83117-83295:1:exon
so has part: feature:85282-85391:1:exon
so has part: feature:88736-88814:1:exon
so has part: feature:90093-90260:1:exon
so has part: feature:92702-92825:1:exon
so has part: feature:94803-94948:1:exon
so has part: feature:96104-96236:1:exon
so has part: feature:98636-98773:1:exon

XP_016850315.1
type: Protein
SIO_000068: ncbiprotein

position:43599:1
position: 43599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:98773:1
position: 98773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43599-43739:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:52876-53104:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:57436-57668:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:62014-62193:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:63305-63454:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:64991-65080:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:68234-68455:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:72003-72099:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:72211-72341:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:73875-73934:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:75257-75424:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:75523-75644:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:79164-79307:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:83117-83295:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:85282-85391:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:88736-88814:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:90093-90260:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:92702-92825:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:94803-94948:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:96104-96236:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:98636-98773:1:exon

pik3cd
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: pik3cd
inference: similar to RNA sequence, mRNA (same species):INSD:GAED01067778.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 100 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform
translation: MLPGIYCPVEFWSKEANQSIQVDFLLPTGIYLTLSVSCNATLGTIKQLVWHHAQCEPFFHMLSDPESYVFTCINQTAERQELEDEQRRLCDIQPFLPVLRLVAREGDRVKKLISSQISLLIGKGLHEFDSLGDLEVDDFRVKMQHFCEERAARRQQLSWKAWMEYSFPVQLEPLANGLGGRSLLQFPNKNIFVNVKFESGGESFTFQISPKEYPATLMSYAIKKQATVFRHQKINSPEDYALQINGKYEYLYGNHPLYQFQYIRDCLCRGLLPHLTMVHASSISALWEEQTNGISYPIKAASKAPPVPKKKPMSVSLWSLEQPYSIELVQGSKVNADERMKLVVQAGLYHGHEMLCKMVSSSEVSVCSEPVWGQRLEFEINVCDLPRMARLCLALYAVVEKAKKARSTKKKSKKADCPIAWVNVMLFDFRDQLKTGECCLPMWSSFPDEKGELLNPMGTVQTNPNTESAASLVIRFPTISSNPLYYPTFEQILEQGKNGQSSFSMVEDPEEKQQLKEILERRSHTDLYEHEKDLVWKMRHQIRDQFPHALAKLLVVTKWNKHEDVAQMIYLLQSWPELPVLNALELLDFSFPDRYVGAFTVNSLKKLTDADLFQYLLQLVQVLKYESYLDCELTKFLLGRALSNRKIGHFLFWHLRSEMHVPSVALRFGLILEAYCRGSTFHMKALMKQTESLNKMKALNDLIKASSQKNAKPQTKEFMHTCMRQETYLEALSNLQSPLNPSVILAKVSVELCTFMDSKMKPLWIVFNNEDAGGGHVGVIFKNGDDLRQDMLTLQMIQLMDILWKKEGLDLRMTPYGCLSTGDKTGLIEVVMDSDTIANIQLNKSNMAATAAFNKDALLNWLKSKNPGDALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRENGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFREYCERAYMILRCHGLLFLHLFALMKAAGLPELSCSKDIQYLKDSLALGKTDEEARRHFQLKFNEALRESWKTKVNWLAHNVSKDNRQ
SIO_010081: pik3cd
subclass of: SO_0000673
so part of: pik3cd
location: join(43599..43739,52876..53104,57436..57668,62014..62193,63305..63454,64991..65080,68234..68455,72003..72099,72211..72341,73875..73934,75257..75424,75523..75644,79164..>79307,<83117..83295,85282..85391,88736..88814,90093..90260,92702..92825,94803..94948,96104..96236,98636..98773)
location: region:43599-98773:1
so has part: feature:43599-43739:1:exon
so has part: feature:52876-53104:1:exon
so has part: feature:57436-57668:1:exon
so has part: feature:62014-62193:1:exon
so has part: feature:63305-63454:1:exon
so has part: feature:64991-65080:1:exon
so has part: feature:68234-68455:1:exon
so has part: feature:72003-72099:1:exon
so has part: feature:72211-72341:1:exon
so has part: feature:73875-73934:1:exon
so has part: feature:75257-75424:1:exon
so has part: feature:75523-75644:1:exon
so has part: feature:79164-79307:1:exon
so has part: feature:83117-83295:1:exon
so has part: feature:85282-85391:1:exon
so has part: feature:88736-88814:1:exon
so has part: feature:90093-90260:1:exon
so has part: feature:92702-92825:1:exon
so has part: feature:94803-94948:1:exon
so has part: feature:96104-96236:1:exon
so has part: feature:98636-98773:1:exon

XP_008111838.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43599-43739:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:52876-53104:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:57436-57668:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:62014-62193:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:63305-63454:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:64991-65080:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:68234-68455:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:72003-72099:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:72211-72341:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:73875-73934:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:75257-75424:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:75523-75644:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:79164-79307:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:83117-83295:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:85282-85391:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:88736-88814:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:90093-90260:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:92702-92825:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:94803-94948:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:96104-96236:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:98636-98773:1:exon

clstn1
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: clstn1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(104240..153820)
location: region:104240-153820:-1
so has part: feature:104240-153820:-1:exon
subclass of: SO_0000010

100551745
type: Gene
SIO_000068: ncbigene

position:104240:-1
position: 104240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:153820:-1
position: 153820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:104240-153820:-1:exon

clstn1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: clstn1
product: calsyntenin 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 3 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_008113630.2
SIO_010081: clstn1
subclass of: SO_0000673
so part of: clstn1
location: complement(join(104240..106032,109348..109532,111658..111799,112628..112773,112941..113116,116394..116608,116764..116771,116926..117074,119682..119839,122669..122719,126081..126243,126732..126853,131188..131436,134228..134413,136093..136242,138162..138370,143733..143928,147067..147096,153640..153820))
location: region:104240-153820:-1
so has part: feature:153640-153820:-1:exon
so has part: feature:147067-147096:-1:exon
so has part: feature:143733-143928:-1:exon
so has part: feature:138162-138370:-1:exon
so has part: feature:136093-136242:-1:exon
so has part: feature:134228-134413:-1:exon
so has part: feature:131188-131436:-1:exon
so has part: feature:126732-126853:-1:exon
so has part: feature:126081-126243:-1:exon
so has part: feature:122669-122719:-1:exon
so has part: feature:119682-119839:-1:exon
so has part: feature:116926-117074:-1:exon
so has part: feature:116764-116771:-1:exon
so has part: feature:116394-116608:-1:exon
so has part: feature:112941-113116:-1:exon
so has part: feature:112628-112773:-1:exon
so has part: feature:111658-111799:-1:exon
so has part: feature:109348-109532:-1:exon
so has part: feature:104240-106032:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:153640-153820:-1:exon

position:153640:-1
position: 153640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:147067-147096:-1:exon

position:147067:-1
position: 147067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:147096:-1
position: 147096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:143733-143928:-1:exon

position:143733:-1
position: 143733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143928:-1
position: 143928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:138162-138370:-1:exon

position:138162:-1
position: 138162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:138370:-1
position: 138370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:136093-136242:-1:exon

position:136093:-1
position: 136093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:136242:-1
position: 136242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:134228-134413:-1:exon

position:134228:-1
position: 134228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134413:-1
position: 134413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:131188-131436:-1:exon

position:131188:-1
position: 131188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:131436:-1
position: 131436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:126732-126853:-1:exon

position:126732:-1
position: 126732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126853:-1
position: 126853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:126081-126243:-1:exon

position:126081:-1
position: 126081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126243:-1
position: 126243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:122669-122719:-1:exon

position:122669:-1
position: 122669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:122719:-1
position: 122719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:119682-119839:-1:exon

position:119682:-1
position: 119682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:119839:-1
position: 119839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:116926-117074:-1:exon

position:116926:-1
position: 116926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:117074:-1
position: 117074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:116764-116771:-1:exon

position:116764:-1
position: 116764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116771:-1
position: 116771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:116394-116608:-1:exon

position:116394:-1
position: 116394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116608:-1
position: 116608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:112941-113116:-1:exon

position:112941:-1
position: 112941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:113116:-1
position: 113116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:112628-112773:-1:exon

position:112628:-1
position: 112628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112773:-1
position: 112773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:111658-111799:-1:exon

position:111658:-1
position: 111658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111799:-1
position: 111799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:109348-109532:-1:exon

position:109348:-1
position: 109348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109532:-1
position: 109532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:104240-106032:-1:exon

position:106032:-1
position: 106032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

clstn1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: clstn1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: calsyntenin-1
translation: MLFLTLLPFPSSFTVNKHKPWIETTYHGIVTENDNIVLLDPPLIALDKDAPLRFAESFEVTVTKEGEICGFKIHGQNVPFEAVVVDKSTGEGMIRSKEKLDCELQKDYTFTIQAYDCGKGPDGANMKKSHKATVHIQVNDVNEYAPVFKEKSYKATVIEGKRYDNVLKVEAVDADCSPQFSQICSYEIVTPDVPFTIDKDGYIKNSEKLNYGKEHQYKLTVTAYDCGKKRATEDVLVKITIKPTCKPGWQGWSKRMEYEPGTGALALFPNIHLETCDEPITSIEATIELETNHIGKGCDRDTYSEKSLHRLCGASSDTAELLPPPSNTANWTVGLPTDNGHDSDQVFEFNGTQAVKIPDNVVSINMKEPFVISVWMRHGPGSREKEAILCSSDKTDMNRHHYSLYVHNCRLGFLFRQDPSEGQSYKPAEFHWKLNQVCDKEWHHYILNVEFPAVTLYVDGVSFDPFPVTEDYPLHPSKIESQLVVGACWQEYTGNENDTEKATETPAGGELRMAQYFRGNLAGLMIRSGKLENKKVIDCLYTCKEGLDLHVADGAGKGLKVHMNPSQSAVTLEGDDFDRFDKAMQHISYLNSRQFPTPGIRRIKITSTAKFFSTSACIAIPFVDGYVMVLQPEEPKISLSGINHFARSASEFESPEGVSLFPELRIISTITREVEPEGDGDEDPTVQESLVSEEIMHNLDTCEVTVMGEELNQEQESLEVDVVRLQQKGMEMSSSNLGLIITGVDTMASYEEVLHLIRYRNWHTISLFDRKFKLVCSELNGRYISNEFKVEVNVIHTANPMEHASHIAAQQPQFVQPVHHSFVDLAGHNLANPHPGFSVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDSGKENEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEDGEEEDDITSAESESSEEEEGEQEEDQQNVNRQQQLEWDDSTLTY
SIO_010081: clstn1
subclass of: SO_0000673
so part of: clstn1
location: complement(join(105838..106032,109348..109532,111658..111799,112628..112773,112941..113116,116394..116608,116764..116771,116926..117074,119682..119839,122669..122719,126081..126243,126732..126853,131188..131436,134228..134413,136093..136242,138162..138370,143733..143928,147067..147096,153640..153805))
location: region:105838-153805:-1
so has part: feature:153640-153805:-1:exon
so has part: feature:147067-147096:-1:exon
so has part: feature:143733-143928:-1:exon
so has part: feature:138162-138370:-1:exon
so has part: feature:136093-136242:-1:exon
so has part: feature:134228-134413:-1:exon
so has part: feature:131188-131436:-1:exon
so has part: feature:126732-126853:-1:exon
so has part: feature:126081-126243:-1:exon
so has part: feature:122669-122719:-1:exon
so has part: feature:119682-119839:-1:exon
so has part: feature:116926-117074:-1:exon
so has part: feature:116764-116771:-1:exon
so has part: feature:116394-116608:-1:exon
so has part: feature:112941-113116:-1:exon
so has part: feature:112628-112773:-1:exon
so has part: feature:111658-111799:-1:exon
so has part: feature:109348-109532:-1:exon
so has part: feature:105838-106032:-1:exon

XP_008111837.1
type: Protein
SIO_000068: ncbiprotein

position:105838:-1
position: 105838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:153805:-1
position: 153805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153640-153805:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:147067-147096:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:143733-143928:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:138162-138370:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:136093-136242:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:134228-134413:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:131188-131436:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:126732-126853:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:126081-126243:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:122669-122719:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:119682-119839:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:116926-117074:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:116764-116771:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:116394-116608:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:112941-113116:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:112628-112773:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:111658-111799:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:109348-109532:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:105838-106032:-1:exon

ctnnbip1
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: ctnnbip1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(189130..230228)
location: region:189130-230228:-1
so has part: feature:189130-230228:-1:exon
subclass of: SO_0000010

100551881
type: Gene
SIO_000068: ncbigene

position:189130:-1
position: 189130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:230228:-1
position: 230228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189130-230228:-1:exon

ctnnbip1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: ctnnbip1
product: catenin beta interacting protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_003222733.3
SIO_010081: ctnnbip1
subclass of: SO_0000673
so part of: ctnnbip1
location: complement(join(189130..190282,227895..227985,229755..230228))
location: region:189130-230228:-1
so has part: feature:229755-230228:-1:exon
so has part: feature:227895-227985:-1:exon
so has part: feature:189130-190282:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:229755-230228:-1:exon

position:229755:-1
position: 229755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:227895-227985:-1:exon

position:227895:-1
position: 227895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:227985:-1
position: 227985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:189130-190282:-1:exon

position:190282:-1
position: 190282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ctnnbip1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: ctnnbip1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-catenin-interacting protein 1
translation: MNREGVPGKSPEEMYIQQKVRVLLMLRKMGSNLTTSEEEFLRTYAGVVNSQLSQLPQHSIDQGAEDGVMAFSRSETEDRRQ
SIO_010081: ctnnbip1
subclass of: SO_0000673
so part of: ctnnbip1
location: complement(join(190224..190282,227895..227985,229755..229850))
location: region:190224-229850:-1
so has part: feature:229755-229850:-1:exon
so has part: feature:227895-227985:-1:exon
so has part: feature:190224-190282:-1:exon

XP_003222781.2
type: Protein
SIO_000068: ncbiprotein

position:190224:-1
position: 190224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:229850:-1
position: 229850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:229755-229850:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:227895-227985:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:190224-190282:-1:exon