Anolis carolinensis linkage group g, AnoCar2.0, whole genome shotgun sequence.
type: Entry
definition: Anolis carolinensis linkage group g, AnoCar2.0, whole genome shotgun sequence.
sequence version: NC_014787.1
sequence date: 2016-05-31
sequence: sequence
division: CON
label: NC_014787.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA60547
dblink: SAMN02981230
keyword: WGS
keyword: RefSeq
source: Anolis carolinensis (green anole)
organism: Anolis carolinensis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM000948.1.\nAssembly Name: AnoCar2.0\nThe genomic sequence for this RefSeq record is from the whole\ngenome assembly released by the Broad Institute as AnoCar2.0 in\nDecember 2009 (see http://www.broadinstitute.org/models/anole). The\noriginal whole genome shotgun project has the accession\nAAWZ00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Arachne v. 3.0.0\nAssembly Name :: AnoCar2.0\nGenome Coverage :: 7.10x\nSequencing Technology :: ABI\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Version :: Anolis carolinensis Annotation\n Release 102\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 7.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000018
sequence length: 424765
topology: linear
so has quality: SO_0000987
location: 1..424765
location: region:1-424765:1
RO_0002162: 28377

NC_014787
type: RefSeq
SIO_000068: refseq

PRJNA60547
type: BioProject
SIO_000068: bioproject

SAMN02981230
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:424765:1
position: 424765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-424765:1:source
so part of: sequence
organism: Anolis carolinensis
mol type: genomic DNA
country: USA
linkage group: g

28377
type: Taxonomy
SIO_000068: taxonomy

LOC100561308
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: LOC100561308
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(38833..213812)
location: region:38833-213812:-1
so has part: feature:38833-213812:-1:exon
subclass of: SO_0000010

100561308
type: Gene
SIO_000068: ncbigene

position:38833:-1
position: 38833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213812:-1
position: 213812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38833-213812:-1:exon

LOC100561308
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: LOC100561308
product: collagen alpha-1(V) chain
inference: similar to RNA sequence, mRNA (same species):INSD:GAFM01050406.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 57 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 25 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016994824.1
SIO_010081: LOC100561308
subclass of: SO_0000673
so part of: LOC100561308
location: complement(join(38833..41395,42842..43075,48712..48780,51762..51874,53359..53620,53713..53766,54876..54911,55366..55419,57161..57268,57547..57600,57868..57921,59526..59633,59741..59794,60216..60269,60397..60450,60715..60768,61560..61667,61804..61857,62075..62182,63328..63381,63605..63712,64205..64258,65685..65738,67296..67403,71053..71160,71662..71715,71833..71922,73570..73677,75288..75341,78867..78920,79041..79094,80022..80066,82308..82361,83937..83981,84426..84479,96091..96144,96327..96434,96663..96716,102019..102063,104098..104151,107663..107707,108230..108283,109870..109914,110267..110320,111416..111460,112195..112248,115015..115059,117180..117233,117397..117450,123535..123588,127868..127921,128070..>128123,<134465..134557,137115..137189,146148..146210,146512..146553,148310..148366,150365..150529,151742..151993,153658..153816,154330..154461,178078..178240,180682..180895,183463..183630,213584..213812))
location: region:38833-213812:-1
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so has part: feature:183463-183630:-1:exon
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so has part: feature:108230-108283:-1:exon
so has part: feature:107663-107707:-1:exon
so has part: feature:104098-104151:-1:exon
so has part: feature:102019-102063:-1:exon
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so has part: feature:96327-96434:-1:exon
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urn:…
SIO_000300: 1
SIO_000628: feature:213584-213812:-1:exon

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urn:…
SIO_000300: 2
SIO_000628: feature:183463-183630:-1:exon

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SIO_000300: 4
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urn:…
SIO_000300: 5
SIO_000628: feature:154330-154461:-1:exon

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SIO_000628: feature:150365-150529:-1:exon

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type: ReverseStrandPosition
type: ExactPosition

position:60450:-1
position: 60450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 52
SIO_000628: feature:60216-60269:-1:exon

position:60216:-1
position: 60216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60269:-1
position: 60269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 53
SIO_000628: feature:59741-59794:-1:exon

position:59741:-1
position: 59741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59794:-1
position: 59794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 54
SIO_000628: feature:59526-59633:-1:exon

position:59526:-1
position: 59526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59633:-1
position: 59633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 55
SIO_000628: feature:57868-57921:-1:exon

position:57868:-1
position: 57868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57921:-1
position: 57921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 56
SIO_000628: feature:57547-57600:-1:exon

position:57547:-1
position: 57547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57600:-1
position: 57600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 57
SIO_000628: feature:57161-57268:-1:exon

position:57161:-1
position: 57161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57268:-1
position: 57268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 58
SIO_000628: feature:55366-55419:-1:exon

position:55366:-1
position: 55366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55419:-1
position: 55419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 59
SIO_000628: feature:54876-54911:-1:exon

position:54876:-1
position: 54876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54911:-1
position: 54911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 60
SIO_000628: feature:53713-53766:-1:exon

position:53713:-1
position: 53713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53766:-1
position: 53766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 61
SIO_000628: feature:53359-53620:-1:exon

position:53359:-1
position: 53359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53620:-1
position: 53620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 62
SIO_000628: feature:51762-51874:-1:exon

position:51762:-1
position: 51762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51874:-1
position: 51874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 63
SIO_000628: feature:48712-48780:-1:exon

position:48712:-1
position: 48712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48780:-1
position: 48780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 64
SIO_000628: feature:42842-43075:-1:exon

position:42842:-1
position: 42842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43075:-1
position: 43075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 65
SIO_000628: feature:38833-41395:-1:exon

position:41395:-1
position: 41395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100561308
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: LOC100561308
inference: similar to RNA sequence, mRNA (same species):INSD:GAFM01050406.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 57 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(V) chain
translation: MDTHTRWKRRTWMLGSVVLLLVYAVVQSNAAEPADLLKVLDFHNLPDGISKTTGFCTSRRSSKGADVAYRVTKDAQLSAPTKQLYPASPFPEDFSILTTVKAKKGSQSFLLSIYNEQGIQQIGMEMGRSPVFLYEDHTGKPGPEDYPLFRGINLSDGKWHRIAISVHQKNVTLILDCKKKITKFLDRSDHPIIDVNGIIVFGTRILDEEVFEGDIQQLLLVSDHRAAYDYCEHYSPDCDTAVPDSPQSQDPSPDEYYTDGDGNLEAEGETYYYEYPYYEDTDDTGKAIPPTTQPVEIEEVARERTETTEEVAPPATQPPPVVESTLEENKEDEKVDDPLVDEYNYEPLPDEYYTPLPYEDLNYEDIDNLDKFTEEGVEAEVPTSTVITYNETDAIATRNEDEDVDKDFTVDTIKEYEDGYYDVGDYDRTDSPDIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPSGPEGPAGLPGPPGTTGPMGPVGDPGERGPPGRAGLPGADGLPGPPGTMLMLPFRFSGGGDGGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPLGPPGSTGIKGESGDMGPQGPRGVQGPPGPSGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDSGPSGPPGAPGEDGDRGDDGEVGPRGLPGEPGPRGLLGPKGPPGPSGPPGIAGMDGQSGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGDKGPLGKPGLPGMPGADGPPGHPGKEGPSGEKGSQGPAGPQGPIGYPGPRGVKGADGVRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGEPGPLGPSGEKGKLGVPGLPGYPGRIGPKGSTGFPGFPGANGEKGTRGTPGKPGPRGQRGPTGPRGERGQRGITGKPGPKGNSGGDGPPGPPGERGPPGTQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPAGLRGFPGDRGLPGPIGPVGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGQIGQPGPAGADGEPGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGSPGADGPQGPPGGIGNPGAVGEKGEPGESGEPGLPGDGGPPGPKGERGEKGEAGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGESGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEGGLEGPPGKTGPVGPQGPPGKPGPDGLRGIPGPVGEQGLPGAPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGGSGAKGEQGIAGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGQKGEMGHPGLPGPPGPPGEVIQPLPIQSSKRTRRNIDASQLVDDAPNTDNYMDYADGMEEIFGSLNSLKLEIEQMKHPLGTQHNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGETCIFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDSEGNPIGVVQMTFLRLLTASAHQNITYNCYQSVAWHDDASGNYDKAIRFLGSNDEEMSYDNNPFIRAVLDGCAARKGYQKTVLEINTPKVEQIPIVDIMFNDFGEASQKFGFEVGPACFMG
SIO_010081: LOC100561308
subclass of: SO_0000673
so part of: LOC100561308
location: complement(join(41249..41395,42842..43075,48712..48780,51762..51874,53359..53620,53713..53766,54876..54911,55366..55419,57161..57268,57547..57600,57868..57921,59526..59633,59741..59794,60216..60269,60397..60450,60715..60768,61560..61667,61804..61857,62075..62182,63328..63381,63605..63712,64205..64258,65685..65738,67296..67403,71053..71160,71662..71715,71833..71922,73570..73677,75288..75341,78867..78920,79041..79094,80022..80066,82308..82361,83937..83981,84426..84479,96091..96144,96327..96434,96663..96716,102019..102063,104098..104151,107663..107707,108230..108283,109870..109914,110267..110320,111416..111460,112195..112248,115015..115059,117180..117233,117397..117450,123535..123588,127868..127921,128070..>128123,<134465..134557,137115..137189,146148..146210,146512..146553,148310..148366,150365..150529,151742..151993,153658..153816,154330..154461,178078..178240,180682..180895,183463..183630,213584..213674))
location: region:41249-213674:-1
so has part: feature:213584-213674:-1:exon
so has part: feature:183463-183630:-1:exon
so has part: feature:180682-180895:-1:exon
so has part: feature:178078-178240:-1:exon
so has part: feature:154330-154461:-1:exon
so has part: feature:153658-153816:-1:exon
so has part: feature:151742-151993:-1:exon
so has part: feature:150365-150529:-1:exon
so has part: feature:148310-148366:-1:exon
so has part: feature:146512-146553:-1:exon
so has part: feature:146148-146210:-1:exon
so has part: feature:137115-137189:-1:exon
so has part: feature:134465-134557:-1:exon
so has part: feature:128070-128123:-1:exon
so has part: feature:127868-127921:-1:exon
so has part: feature:123535-123588:-1:exon
so has part: feature:117397-117450:-1:exon
so has part: feature:117180-117233:-1:exon
so has part: feature:115015-115059:-1:exon
so has part: feature:112195-112248:-1:exon
so has part: feature:111416-111460:-1:exon
so has part: feature:110267-110320:-1:exon
so has part: feature:109870-109914:-1:exon
so has part: feature:108230-108283:-1:exon
so has part: feature:107663-107707:-1:exon
so has part: feature:104098-104151:-1:exon
so has part: feature:102019-102063:-1:exon
so has part: feature:96663-96716:-1:exon
so has part: feature:96327-96434:-1:exon
so has part: feature:96091-96144:-1:exon
so has part: feature:84426-84479:-1:exon
so has part: feature:83937-83981:-1:exon
so has part: feature:82308-82361:-1:exon
so has part: feature:80022-80066:-1:exon
so has part: feature:79041-79094:-1:exon
so has part: feature:78867-78920:-1:exon
so has part: feature:75288-75341:-1:exon
so has part: feature:73570-73677:-1:exon
so has part: feature:71833-71922:-1:exon
so has part: feature:71662-71715:-1:exon
so has part: feature:71053-71160:-1:exon
so has part: feature:67296-67403:-1:exon
so has part: feature:65685-65738:-1:exon
so has part: feature:64205-64258:-1:exon
so has part: feature:63605-63712:-1:exon
so has part: feature:63328-63381:-1:exon
so has part: feature:62075-62182:-1:exon
so has part: feature:61804-61857:-1:exon
so has part: feature:61560-61667:-1:exon
so has part: feature:60715-60768:-1:exon
so has part: feature:60397-60450:-1:exon
so has part: feature:60216-60269:-1:exon
so has part: feature:59741-59794:-1:exon
so has part: feature:59526-59633:-1:exon
so has part: feature:57868-57921:-1:exon
so has part: feature:57547-57600:-1:exon
so has part: feature:57161-57268:-1:exon
so has part: feature:55366-55419:-1:exon
so has part: feature:54876-54911:-1:exon
so has part: feature:53713-53766:-1:exon
so has part: feature:53359-53620:-1:exon
so has part: feature:51762-51874:-1:exon
so has part: feature:48712-48780:-1:exon
so has part: feature:42842-43075:-1:exon

XP_016850313.1
type: Protein
SIO_000068: ncbiprotein

position:41249:-1
position: 41249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213674:-1
position: 213674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213584-213674:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:183463-183630:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:180682-180895:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:178078-178240:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:154330-154461:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:153658-153816:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:151742-151993:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:150365-150529:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:148310-148366:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:146512-146553:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:146148-146210:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:137115-137189:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:134465-134557:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:128070-128123:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:127868-127921:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:123535-123588:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:117397-117450:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:117180-117233:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:115015-115059:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:112195-112248:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:111416-111460:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:110267-110320:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:109870-109914:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:108230-108283:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:107663-107707:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:104098-104151:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:102019-102063:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:96663-96716:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:96327-96434:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:96091-96144:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:84426-84479:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:83937-83981:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:82308-82361:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:80022-80066:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:79041-79094:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:78867-78920:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:75288-75341:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:73570-73677:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:71833-71922:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:71662-71715:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:71053-71160:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:67296-67403:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:65685-65738:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:64205-64258:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:63605-63712:-1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:63328-63381:-1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:62075-62182:-1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:61804-61857:-1:exon

urn:…
SIO_000300: 49
SIO_000628: feature:61560-61667:-1:exon

urn:…
SIO_000300: 50
SIO_000628: feature:60715-60768:-1:exon

urn:…
SIO_000300: 51
SIO_000628: feature:60397-60450:-1:exon

urn:…
SIO_000300: 52
SIO_000628: feature:60216-60269:-1:exon

urn:…
SIO_000300: 53
SIO_000628: feature:59741-59794:-1:exon

urn:…
SIO_000300: 54
SIO_000628: feature:59526-59633:-1:exon

urn:…
SIO_000300: 55
SIO_000628: feature:57868-57921:-1:exon

urn:…
SIO_000300: 56
SIO_000628: feature:57547-57600:-1:exon

urn:…
SIO_000300: 57
SIO_000628: feature:57161-57268:-1:exon

urn:…
SIO_000300: 58
SIO_000628: feature:55366-55419:-1:exon

urn:…
SIO_000300: 59
SIO_000628: feature:54876-54911:-1:exon

urn:…
SIO_000300: 60
SIO_000628: feature:53713-53766:-1:exon

urn:…
SIO_000300: 61
SIO_000628: feature:53359-53620:-1:exon

urn:…
SIO_000300: 62
SIO_000628: feature:51762-51874:-1:exon

urn:…
SIO_000300: 63
SIO_000628: feature:48712-48780:-1:exon

urn:…
SIO_000300: 64
SIO_000628: feature:42842-43075:-1:exon

urn:…
SIO_000300: 65
SIO_000628: feature:41249-41395:-1:exon

LOC100561503
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: LOC100561503
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(296350..339099)
location: region:296350-339099:-1
so has part: feature:296350-339099:-1:exon
subclass of: SO_0000010

100561503
type: Gene
SIO_000068: ncbigene

position:296350:-1
position: 296350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:339099:-1
position: 339099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:296350-339099:-1:exon

LOC100561503
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: LOC100561503
product: retinoic acid receptor RXR-alpha, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_016994825.1
SIO_010081: LOC100561503
subclass of: SO_0000673
so part of: LOC100561503
location: complement(join(296350..297093,304254..304359,306670..306761,307205..307337,309681..309810,315690..315859,318815..318871,327290..327469,328848..328998,338591..339099))
location: region:296350-339099:-1
so has part: feature:338591-339099:-1:exon
so has part: feature:328848-328998:-1:exon
so has part: feature:327290-327469:-1:exon
so has part: feature:318815-318871:-1:exon
so has part: feature:315690-315859:-1:exon
so has part: feature:309681-309810:-1:exon
so has part: feature:307205-307337:-1:exon
so has part: feature:306670-306761:-1:exon
so has part: feature:304254-304359:-1:exon
so has part: feature:296350-297093:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:338591-339099:-1:exon

position:338591:-1
position: 338591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:328848-328998:-1:exon

position:328848:-1
position: 328848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:328998:-1
position: 328998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:327290-327469:-1:exon

position:327290:-1
position: 327290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:327469:-1
position: 327469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:318815-318871:-1:exon

position:318815:-1
position: 318815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:318871:-1
position: 318871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:315690-315859:-1:exon

position:315690:-1
position: 315690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:315859:-1
position: 315859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:309681-309810:-1:exon

position:309681:-1
position: 309681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:309810:-1
position: 309810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:307205-307337:-1:exon

position:307205:-1
position: 307205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:307337:-1
position: 307337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:306670-306761:-1:exon

position:306670:-1
position: 306670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:306761:-1
position: 306761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:304254-304359:-1:exon

position:304254:-1
position: 304254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:304359:-1
position: 304359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:296350-297093:-1:exon

position:297093:-1
position: 297093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100561503
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: LOC100561503
product: retinoic acid receptor RXR-alpha, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_003222941.3
SIO_010081: LOC100561503
subclass of: SO_0000673
so part of: LOC100561503
location: complement(join(296350..297093,304254..304359,306670..306761,307205..307337,309681..309810,315690..315859,327290..327469,328848..328998,338591..338838))
location: region:296350-338838:-1
so has part: feature:338591-338838:-1:exon
so has part: feature:328848-328998:-1:exon
so has part: feature:327290-327469:-1:exon
so has part: feature:315690-315859:-1:exon
so has part: feature:309681-309810:-1:exon
so has part: feature:307205-307337:-1:exon
so has part: feature:306670-306761:-1:exon
so has part: feature:304254-304359:-1:exon
so has part: feature:296350-297093:-1:exon

position:338838:-1
position: 338838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:338591-338838:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:328848-328998:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:327290-327469:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:315690-315859:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:309681-309810:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:307205-307337:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:306670-306761:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:304254-304359:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:296350-297093:-1:exon

LOC100561503
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: LOC100561503
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: retinoic acid receptor RXR-alpha isoform X1
translation: MGAPSLHPPMGPLGSHAQLHSPISTLNSPINGMGPPFSVISSAMGTHSISGPSPGLGFGTNSPQLNSPMNPVSSTEDIKPPLGINGVLKVPVHPSSAMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSNANEDMPVEKILEAELAVEPKTETYIEANMGLTPNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
SIO_010081: LOC100561503
subclass of: SO_0000673
so part of: LOC100561503
location: complement(join(296946..297093,304254..304359,306670..306761,307205..307337,309681..309810,315690..315859,327290..327469,328848..328998,338591..338782))
location: region:296946-338782:-1
so has part: feature:338591-338782:-1:exon
so has part: feature:328848-328998:-1:exon
so has part: feature:327290-327469:-1:exon
so has part: feature:315690-315859:-1:exon
so has part: feature:309681-309810:-1:exon
so has part: feature:307205-307337:-1:exon
so has part: feature:306670-306761:-1:exon
so has part: feature:304254-304359:-1:exon
so has part: feature:296946-297093:-1:exon

XP_003222989.3
type: Protein
SIO_000068: ncbiprotein

position:296946:-1
position: 296946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:338782:-1
position: 338782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:338591-338782:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:328848-328998:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:327290-327469:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:315690-315859:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:309681-309810:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:307205-307337:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:306670-306761:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:304254-304359:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:296946-297093:-1:exon

LOC100561503
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: LOC100561503
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: retinoic acid receptor RXR-alpha isoform X2
translation: MGAPSLHPPMGPLGSHAQLHSPISTLNSPINGMGPPFSVISSAMGTHSISGPSPGLGFGTNSPQLNSPMNPVSSTEDIKPPLGINGVLKVPVHPSSAMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREGMEHHPSRPTRLPGRQEEQAVQEERQRGKDRNENEVESTSNANEDMPVEKILEAELAVEPKTETYIEANMGLTPNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
SIO_010081: LOC100561503
subclass of: SO_0000673
so part of: LOC100561503
location: complement(join(296946..297093,304254..304359,306670..306761,307205..307337,309681..309810,315690..315859,318815..318871,327290..327469,328848..328998,338591..338782))
location: region:296946-338782:-1
so has part: feature:338591-338782:-1:exon
so has part: feature:328848-328998:-1:exon
so has part: feature:327290-327469:-1:exon
so has part: feature:318815-318871:-1:exon
so has part: feature:315690-315859:-1:exon
so has part: feature:309681-309810:-1:exon
so has part: feature:307205-307337:-1:exon
so has part: feature:306670-306761:-1:exon
so has part: feature:304254-304359:-1:exon
so has part: feature:296946-297093:-1:exon

XP_016850314.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:338591-338782:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:328848-328998:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:327290-327469:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:318815-318871:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:315690-315859:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:309681-309810:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:307205-307337:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:306670-306761:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:304254-304359:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:296946-297093:-1:exon