Anolis carolinensis linkage group a, AnoCar2.0, whole genome shotgun sequence.
type: Entry
definition: Anolis carolinensis linkage group a, AnoCar2.0, whole genome shotgun sequence.
sequence version: NC_014782.1
sequence date: 2016-05-31
sequence: sequence
division: CON
label: NC_014782.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA60547
dblink: SAMN02981230
keyword: WGS
keyword: RefSeq
source: Anolis carolinensis (green anole)
organism: Anolis carolinensis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM000943.1.\nAssembly Name: AnoCar2.0\nThe genomic sequence for this RefSeq record is from the whole\ngenome assembly released by the Broad Institute as AnoCar2.0 in\nDecember 2009 (see http://www.broadinstitute.org/models/anole). The\noriginal whole genome shotgun project has the accession\nAAWZ00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Arachne v. 3.0.0\nAssembly Name :: AnoCar2.0\nGenome Coverage :: 7.10x\nSequencing Technology :: ABI\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Version :: Anolis carolinensis Annotation\n Release 102\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 7.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000018
sequence length: 7025928
topology: linear
so has quality: SO_0000987
location: 1..7025928
location: region:1-7025928:1
RO_0002162: 28377

NC_014782
type: RefSeq
SIO_000068: refseq

PRJNA60547
type: BioProject
SIO_000068: bioproject

SAMN02981230
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7025928:1
position: 7025928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7025928:1:source
so part of: sequence
organism: Anolis carolinensis
mol type: genomic DNA
country: USA
linkage group: a

28377
type: Taxonomy
SIO_000068: taxonomy

prom2
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: prom2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6164..>52468)
location: region:6164-52468:-1
so has part: feature:6164-52468:-1:exon
subclass of: SO_0000010

100564795
type: Gene
SIO_000068: ncbigene

position:6164:-1
position: 6164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52468:-1
position: 52468
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6164-52468:-1:exon

prom2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: prom2
product: prominin 2
inference: similar to RNA sequence, mRNA (same species):INSD:GAEC01010338.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 460 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 6 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_008113763.2
SIO_010081: prom2
subclass of: SO_0000673
so part of: prom2
location: complement(join(6164..6376,8402..8490,10435..10541,11908..11997,12336..12404,12811..12891,19215..19268,21548..21640,26252..26323,27741..27887,30580..30664,32097..32188,34492..34615,39094..39246,40112..40271,41698..41761,41864..41938,42848..43047,44107..44196,45278..45341,49735..49855,50398..50600,52419..>52468))
location: region:6164-52468:-1
so has part: feature:52419-52468:-1:exon
so has part: feature:50398-50600:-1:exon
so has part: feature:49735-49855:-1:exon
so has part: feature:45278-45341:-1:exon
so has part: feature:44107-44196:-1:exon
so has part: feature:42848-43047:-1:exon
so has part: feature:41864-41938:-1:exon
so has part: feature:41698-41761:-1:exon
so has part: feature:40112-40271:-1:exon
so has part: feature:39094-39246:-1:exon
so has part: feature:34492-34615:-1:exon
so has part: feature:32097-32188:-1:exon
so has part: feature:30580-30664:-1:exon
so has part: feature:27741-27887:-1:exon
so has part: feature:26252-26323:-1:exon
so has part: feature:21548-21640:-1:exon
so has part: feature:19215-19268:-1:exon
so has part: feature:12811-12891:-1:exon
so has part: feature:12336-12404:-1:exon
so has part: feature:11908-11997:-1:exon
so has part: feature:10435-10541:-1:exon
so has part: feature:8402-8490:-1:exon
so has part: feature:6164-6376:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:52419-52468:-1:exon

position:52419:-1
position: 52419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:50398-50600:-1:exon

position:50398:-1
position: 50398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50600:-1
position: 50600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:49735-49855:-1:exon

position:49735:-1
position: 49735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49855:-1
position: 49855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:45278-45341:-1:exon

position:45278:-1
position: 45278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45341:-1
position: 45341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:44107-44196:-1:exon

position:44107:-1
position: 44107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44196:-1
position: 44196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:42848-43047:-1:exon

position:42848:-1
position: 42848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43047:-1
position: 43047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:41864-41938:-1:exon

position:41864:-1
position: 41864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41938:-1
position: 41938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:41698-41761:-1:exon

position:41698:-1
position: 41698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41761:-1
position: 41761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:40112-40271:-1:exon

position:40112:-1
position: 40112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40271:-1
position: 40271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:39094-39246:-1:exon

position:39094:-1
position: 39094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39246:-1
position: 39246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:34492-34615:-1:exon

position:34492:-1
position: 34492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34615:-1
position: 34615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:32097-32188:-1:exon

position:32097:-1
position: 32097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32188:-1
position: 32188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:30580-30664:-1:exon

position:30580:-1
position: 30580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30664:-1
position: 30664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:27741-27887:-1:exon

position:27741:-1
position: 27741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27887:-1
position: 27887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:26252-26323:-1:exon

position:26252:-1
position: 26252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26323:-1
position: 26323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:21548-21640:-1:exon

position:21548:-1
position: 21548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21640:-1
position: 21640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:19215-19268:-1:exon

position:19215:-1
position: 19215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19268:-1
position: 19268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:12811-12891:-1:exon

position:12811:-1
position: 12811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12891:-1
position: 12891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:12336-12404:-1:exon

position:12336:-1
position: 12336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12404:-1
position: 12404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:11908-11997:-1:exon

position:11908:-1
position: 11908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11997:-1
position: 11997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:10435-10541:-1:exon

position:10435:-1
position: 10435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10541:-1
position: 10541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:8402-8490:-1:exon

position:8402:-1
position: 8402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8490:-1
position: 8490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:6164-6376:-1:exon

position:6376:-1
position: 6376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

prom2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: prom2
inference: similar to RNA sequence, mRNA (same species):INSD:GAEC01010338.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 232 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 3
product: prominin-2
translation: MGLLLVFCFFSALALLCPDLAHLQPCSSESPSLVLRFADVGADHRVLVHRRNPGPLDPLYGLVHSYLDVVQQNPFPADLLREALNDPPSARTSQILQYQTGYLVCATIAVIYFVALPAVGLSLCCCGRRRRCGGRVKAYRRSLRCQRNLLMLGLLLTTLVILAGVVCAFAANQRVKEEMEPGSRDALNTLQALRRHVNGIPQGVQRAVDEVAVPKEQILQDLDNVGRSIGSTIQLVLKGTVYLAMAAMKGRVQDLQNSLHHLRTVNTTVQALIRHQDELESTLKERKESIVFLLKDPRCAYCQSAFNRAESLELGVNYRRVPSVEKELKTLHGLPKTNFTEMIERANRSFNSIPEVAGAKMAEVVRDLKAEIEKAARKVQSIADGFPILEHTRLMNDALAKAENHSRPYFKEVKHYEKYRWIVGVVACTVVLLIVFCNLLGLSLGLYGLTVREDPSDYESRGEAGAKLLLTGIGFSFLFSWLLILLVFGTFLVGGNVQTLVCKHWASQEIYKFIDTPGNLPASMNISQHLGLKKNLNITTAYQQCKNGAGFWEVLHLEDRYNLNEHLHLAKYTTEFQKRLGRFQTRFEDIVLLNAEGRKDLETFRDSRIDLIDYPAFTAEMRNPMVRTNLEGLAGDLERLSTVQSDRTVAERLAEEAWKLKEIQNTMVLLMEGMVAKLKESIHFLSMLAPGLQILINSTESQAGHAETAIPLESQKILQQELSCFERKEVGYVSQYLNWLRIVLIEDVASCLPFSAALDNGRVILCDRIADPWNAFWFSLGCCTIFLILSIFFAIKTMKHFRPIRHRLVSTGSEETYPFHIPRVTSLRL
SIO_010081: prom2
subclass of: SO_0000673
so part of: prom2
location: complement(join(8427..8490,10435..10541,11908..11997,12336..12404,12811..12891,19215..19268,21548..21640,26252..26323,27741..27887,30580..30664,32097..32188,34492..34615,39094..39246,40112..40271,41698..41761,41864..41938,42848..43047,44107..44196,45278..45341,49735..49855,50398..50600,52419..>52468))
location: region:8427-52468:-1
so has part: feature:52419-52468:-1:exon
so has part: feature:50398-50600:-1:exon
so has part: feature:49735-49855:-1:exon
so has part: feature:45278-45341:-1:exon
so has part: feature:44107-44196:-1:exon
so has part: feature:42848-43047:-1:exon
so has part: feature:41864-41938:-1:exon
so has part: feature:41698-41761:-1:exon
so has part: feature:40112-40271:-1:exon
so has part: feature:39094-39246:-1:exon
so has part: feature:34492-34615:-1:exon
so has part: feature:32097-32188:-1:exon
so has part: feature:30580-30664:-1:exon
so has part: feature:27741-27887:-1:exon
so has part: feature:26252-26323:-1:exon
so has part: feature:21548-21640:-1:exon
so has part: feature:19215-19268:-1:exon
so has part: feature:12811-12891:-1:exon
so has part: feature:12336-12404:-1:exon
so has part: feature:11908-11997:-1:exon
so has part: feature:10435-10541:-1:exon
so has part: feature:8427-8490:-1:exon

XP_008111970.2
type: Protein
SIO_000068: ncbiprotein

position:8427:-1
position: 8427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52419-52468:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:50398-50600:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:49735-49855:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:45278-45341:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:44107-44196:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:42848-43047:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:41864-41938:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:41698-41761:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:40112-40271:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:39094-39246:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:34492-34615:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:32097-32188:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:30580-30664:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:27741-27887:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:26252-26323:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:21548-21640:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:19215-19268:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:12811-12891:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:12336-12404:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:11908-11997:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:10435-10541:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:8427-8490:-1:exon

nectin1
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: nectin1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(321098..627934)
location: region:321098-627934:-1
so has part: feature:321098-627934:-1:exon
subclass of: SO_0000010

100564991
type: Gene
SIO_000068: ncbigene

position:321098:-1
position: 321098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:627934:-1
position: 627934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321098-627934:-1:exon

nectin1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: nectin1
product: nectin cell adhesion molecule 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_016994709.1
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(321098..321734,355130..355243,359847..359937,361601..361748,467857..468008,476034..476151,477485..477787,478946..479296,627254..627934))
location: region:321098-627934:-1
so has part: feature:627254-627934:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:361601-361748:-1:exon
so has part: feature:359847-359937:-1:exon
so has part: feature:355130-355243:-1:exon
so has part: feature:321098-321734:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627934:-1:exon

position:627254:-1
position: 627254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

position:478946:-1
position: 478946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:479296:-1
position: 479296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

position:477485:-1
position: 477485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:477787:-1
position: 477787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

position:476034:-1
position: 476034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:476151:-1
position: 476151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:467857-468008:-1:exon

position:467857:-1
position: 467857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:468008:-1
position: 468008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:361601-361748:-1:exon

position:361601:-1
position: 361601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:361748:-1
position: 361748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:359847-359937:-1:exon

position:359847:-1
position: 359847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:359937:-1
position: 359937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:355130-355243:-1:exon

position:355130:-1
position: 355130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:355243:-1
position: 355243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:321098-321734:-1:exon

position:321734:-1
position: 321734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

nectin1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: nectin1
product: nectin cell adhesion molecule 1, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_008113741.1
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(321098..321734,359847..359937,361601..361748,467857..468008,470057..470086,476034..476151,477485..477787,478946..479296,627254..627934))
location: region:321098-627934:-1
so has part: feature:627254-627934:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:470057-470086:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:361601-361748:-1:exon
so has part: feature:359847-359937:-1:exon
so has part: feature:321098-321734:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627934:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:470057-470086:-1:exon

position:470057:-1
position: 470057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:470086:-1
position: 470086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:467857-468008:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:361601-361748:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:359847-359937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:321098-321734:-1:exon

nectin1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: nectin1
product: nectin cell adhesion molecule 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_016994708.1
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(321098..321734,355130..355243,359847..359937,361601..361748,467857..468008,470057..470086,476034..476151,477485..477787,478946..479296,627254..627934))
location: region:321098-627934:-1
so has part: feature:627254-627934:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:470057-470086:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:361601-361748:-1:exon
so has part: feature:359847-359937:-1:exon
so has part: feature:355130-355243:-1:exon
so has part: feature:321098-321734:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627934:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:470057-470086:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:467857-468008:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:361601-361748:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:359847-359937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:355130-355243:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:321098-321734:-1:exon

nectin1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: nectin1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nectin-1 isoform X3
translation: MAAEASPGWLRSWWATGLCLAALGPFPGLWAQMVLVNDTVSGFIGTSVILHCSMTNPSPNVKITQVTWQKATNGSKQNVAIYNPNMGVSVLQPYKERVTFRDPSTKDGTIQLSRLELEDEGVYICEFATFPTGNRENQLNLTVLAKPTNRMERTTRPLIARSGMTEKIVVATCTSSNGKPPSTVTWDTKLKGEAEFQEIRNNNGTITVTSRYRLLPSREAHRQQLMCVVNYQLDRFTDSMTLNVLYEPEVRIDGFDGNWYLNRKDVKLTCISDANPPATQYQWKLMNGSLPDNVEVQNSTLFFKGPVTYSLAGTYVCEASNTIGTRSGLVEVNVTEKPLPQAGAGGILGILGMVIAAVLIVGVATIVFVVYRRQQKSRTEADHDMMDLPPSHKPAPPPPKRKQDMKSHLTAEDIQVVHLDNMKEPEEEIQKLPPQPPYYDMAATEPSPQSDKMNFRNCHSEIPDAGDYLTCRYSREDQYLTKIPYVYSPLSYLPEGAHPSNHTSTSFCCPPPGSRAPYICPKEQYV
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(321513..321734,355130..355243,359847..359937,361601..361748,467857..468008,476034..476151,477485..477787,478946..479296,627254..627335))
location: region:321513-627335:-1
so has part: feature:627254-627335:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:361601-361748:-1:exon
so has part: feature:359847-359937:-1:exon
so has part: feature:355130-355243:-1:exon
so has part: feature:321513-321734:-1:exon

XP_016850198.1
type: Protein
SIO_000068: ncbiprotein

position:321513:-1
position: 321513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:627335:-1
position: 627335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627335:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:467857-468008:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:361601-361748:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:359847-359937:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:355130-355243:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:321513-321734:-1:exon

nectin1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: nectin1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nectin-1 isoform X7
translation: MAAEASPGWLRSWWATGLCLAALGPFPGLWAQMVLVNDTVSGFIGTSVILHCSMTNPSPNVKITQVTWQKATNGSKQNVAIYNPNMGVSVLQPYKERVTFRDPSTKDGTIQLSRLELEDEGVYICEFATFPTGNRENQLNLTVLAKPTNRMERTTRPLIARSGMTEKIVVATCTSSNGKPPSTVTWDTKLKGEAEFQEIRNNNGTITVTSRYRLLPSREAHRQQLMCVVNYQLDRFTDSMTLNVLYEPEVRIDGFDGNWYLNRKDVKLTCISDANPPATQYQWKLLPQTKVGMDRMNGSLPDNVEVQNSTLFFKGPVTYSLAGTYVCEASNTIGTRSGLVEVNVTEKPLPQAGAGGILGILGMVIAAVLIVGVATIVFVVYRRQQKSRTEADHDMMDLPPSHKPAPPPPKRKQDMKSHLTAEDIQNFRNCHSEIPDAGDYLTCRYSREDQYLTKIPYVYSPLSYLPEGAHPSNHTSTSFCCPPPGSRAPYICPKEQYV
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(321513..321734,359847..359937,361601..361748,467857..468008,470057..470086,476034..476151,477485..477787,478946..479296,627254..627335))
location: region:321513-627335:-1
so has part: feature:627254-627335:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:470057-470086:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:361601-361748:-1:exon
so has part: feature:359847-359937:-1:exon
so has part: feature:321513-321734:-1:exon

XP_008111948.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627335:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:470057-470086:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:467857-468008:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:361601-361748:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:359847-359937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:321513-321734:-1:exon

nectin1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: nectin1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nectin-1 isoform X1
translation: MAAEASPGWLRSWWATGLCLAALGPFPGLWAQMVLVNDTVSGFIGTSVILHCSMTNPSPNVKITQVTWQKATNGSKQNVAIYNPNMGVSVLQPYKERVTFRDPSTKDGTIQLSRLELEDEGVYICEFATFPTGNRENQLNLTVLAKPTNRMERTTRPLIARSGMTEKIVVATCTSSNGKPPSTVTWDTKLKGEAEFQEIRNNNGTITVTSRYRLLPSREAHRQQLMCVVNYQLDRFTDSMTLNVLYEPEVRIDGFDGNWYLNRKDVKLTCISDANPPATQYQWKLLPQTKVGMDRMNGSLPDNVEVQNSTLFFKGPVTYSLAGTYVCEASNTIGTRSGLVEVNVTEKPLPQAGAGGILGILGMVIAAVLIVGVATIVFVVYRRQQKSRTEADHDMMDLPPSHKPAPPPPKRKQDMKSHLTAEDIQVVHLDNMKEPEEEIQKLPPQPPYYDMAATEPSPQSDKMNFRNCHSEIPDAGDYLTCRYSREDQYLTKIPYVYSPLSYLPEGAHPSNHTSTSFCCPPPGSRAPYICPKEQYV
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(321513..321734,355130..355243,359847..359937,361601..361748,467857..468008,470057..470086,476034..476151,477485..477787,478946..479296,627254..627335))
location: region:321513-627335:-1
so has part: feature:627254-627335:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:470057-470086:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:361601-361748:-1:exon
so has part: feature:359847-359937:-1:exon
so has part: feature:355130-355243:-1:exon
so has part: feature:321513-321734:-1:exon

XP_016850197.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627335:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:470057-470086:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:467857-468008:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:361601-361748:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:359847-359937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:355130-355243:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:321513-321734:-1:exon

nectin1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: nectin1
product: nectin cell adhesion molecule 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_008113739.2
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(321595..321734,346098..346210,355130..355243,359847..359937,361601..361748,467857..468008,470057..470086,476034..476151,477485..477787,478946..479296,627254..627934))
location: region:321595-627934:-1
so has part: feature:627254-627934:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:470057-470086:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:361601-361748:-1:exon
so has part: feature:359847-359937:-1:exon
so has part: feature:355130-355243:-1:exon
so has part: feature:346098-346210:-1:exon
so has part: feature:321595-321734:-1:exon

position:321595:-1
position: 321595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627934:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:470057-470086:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:467857-468008:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:361601-361748:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:359847-359937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:355130-355243:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:346098-346210:-1:exon

position:346098:-1
position: 346098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:346210:-1
position: 346210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:321595-321734:-1:exon

nectin1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: nectin1
product: nectin cell adhesion molecule 1, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_008113740.1
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(321654..321734,346020..346210,355130..355243,359847..359937,361601..361748,467857..468008,470057..470086,476034..476151,477485..477787,478946..479296,627254..627934))
location: region:321654-627934:-1
so has part: feature:627254-627934:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:470057-470086:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:361601-361748:-1:exon
so has part: feature:359847-359937:-1:exon
so has part: feature:355130-355243:-1:exon
so has part: feature:346020-346210:-1:exon
so has part: feature:321654-321734:-1:exon

position:321654:-1
position: 321654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627934:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:470057-470086:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:467857-468008:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:361601-361748:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:359847-359937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:355130-355243:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:346020-346210:-1:exon

position:346020:-1
position: 346020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:321654-321734:-1:exon

nectin1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: nectin1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nectin-1 isoform X5
translation: MAAEASPGWLRSWWATGLCLAALGPFPGLWAQMVLVNDTVSGFIGTSVILHCSMTNPSPNVKITQVTWQKATNGSKQNVAIYNPNMGVSVLQPYKERVTFRDPSTKDGTIQLSRLELEDEGVYICEFATFPTGNRENQLNLTVLAKPTNRMERTTRPLIARSGMTEKIVVATCTSSNGKPPSTVTWDTKLKGEAEFQEIRNNNGTITVTSRYRLLPSREAHRQQLMCVVNYQLDRFTDSMTLNVLYEPEVRIDGFDGNWYLNRKDVKLTCISDANPPATQYQWKLLPQTKVGMDRMNGSLPDNVEVQNSTLFFKGPVTYSLAGTYVCEASNTIGTRSGLVEVNVTEKPLPQAGAGGILGILGMVIAAVLIVGVATIVFVVYRRQQKSRTEADHDMMDLPPSHKPAPPPPKRKQDMKSHLTAEDIQVVHLDNMKEPEEEIQKLPPQPPYYDMAATEPSPQSDKMNPSNSKDSDVQYAELDTSALATSPSPRTSIHAGGDLVETLETVTQRYRMRVIT
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(321686..321734,346098..346210,355130..355243,359847..359937,361601..361748,467857..468008,470057..470086,476034..476151,477485..477787,478946..479296,627254..627335))
location: region:321686-627335:-1
so has part: feature:627254-627335:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:470057-470086:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:361601-361748:-1:exon
so has part: feature:359847-359937:-1:exon
so has part: feature:355130-355243:-1:exon
so has part: feature:346098-346210:-1:exon
so has part: feature:321686-321734:-1:exon

XP_008111946.1
type: Protein
SIO_000068: ncbiprotein

position:321686:-1
position: 321686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627335:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:470057-470086:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:467857-468008:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:361601-361748:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:359847-359937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:355130-355243:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:346098-346210:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:321686-321734:-1:exon

nectin1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: nectin1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nectin-1 isoform X6
translation: MAAEASPGWLRSWWATGLCLAALGPFPGLWAQMVLVNDTVSGFIGTSVILHCSMTNPSPNVKITQVTWQKATNGSKQNVAIYNPNMGVSVLQPYKERVTFRDPSTKDGTIQLSRLELEDEGVYICEFATFPTGNRENQLNLTVLAKPTNRMERTTRPLIARSGMTEKIVVATCTSSNGKPPSTVTWDTKLKGEAEFQEIRNNNGTITVTSRYRLLPSREAHRQQLMCVVNYQLDRFTDSMTLNVLYEPEVRIDGFDGNWYLNRKDVKLTCISDANPPATQYQWKLLPQTKVGMDRMNGSLPDNVEVQNSTLFFKGPVTYSLAGTYVCEASNTIGTRSGLVEVNVTEKPLPQAGAGGILGILGMVIAAVLIVGVATIVFVVYRRQQKSRTEADHDMMDLPPSHKPAPPPPKRKQDMKSHLTAEDIQVVHLDNMKEPEEEIQKLPPQPPYYDMAATEPSPQSDKMNPSNSKDSDVQYAELDTSALATSPSPRTSIHAGGDLVEYATIQANLC
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(346067..346210,355130..355243,359847..359937,361601..361748,467857..468008,470057..470086,476034..476151,477485..477787,478946..479296,627254..627335))
location: region:346067-627335:-1
so has part: feature:627254-627335:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:470057-470086:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:361601-361748:-1:exon
so has part: feature:359847-359937:-1:exon
so has part: feature:355130-355243:-1:exon
so has part: feature:346067-346210:-1:exon

XP_008111947.1
type: Protein
SIO_000068: ncbiprotein

position:346067:-1
position: 346067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627335:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:470057-470086:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:467857-468008:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:361601-361748:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:359847-359937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:355130-355243:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:346067-346210:-1:exon

nectin1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: nectin1
product: nectin cell adhesion molecule 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_003222797.3
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(447640..449545,467857..468008,476034..476151,477485..477787,478946..479296,627254..627934))
location: region:447640-627934:-1
so has part: feature:627254-627934:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:447640-449545:-1:exon

position:447640:-1
position: 447640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627934:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:467857-468008:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:447640-449545:-1:exon

position:449545:-1
position: 449545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

nectin1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: nectin1
product: nectin cell adhesion molecule 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_008113738.2
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(447640..449545,467857..468008,470057..470086,476034..476151,477485..477787,478946..479296,627254..627934))
location: region:447640-627934:-1
so has part: feature:627254-627934:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:470057-470086:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:447640-449545:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627934:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:470057-470086:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:467857-468008:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:447640-449545:-1:exon

nectin1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: nectin1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nectin-1 isoform X4
translation: MAAEASPGWLRSWWATGLCLAALGPFPGLWAQMVLVNDTVSGFIGTSVILHCSMTNPSPNVKITQVTWQKATNGSKQNVAIYNPNMGVSVLQPYKERVTFRDPSTKDGTIQLSRLELEDEGVYICEFATFPTGNRENQLNLTVLAKPTNRMERTTRPLIARSGMTEKIVVATCTSSNGKPPSTVTWDTKLKGEAEFQEIRNNNGTITVTSRYRLLPSREAHRQQLMCVVNYQLDRFTDSMTLNVLYEPEVRIDGFDGNWYLNRKDVKLTCISDANPPATQYQWKLMNGSLPDNVEVQNSTLFFKGPVTYSLAGTYVCEASNTIGTRSGLVEVNVTEFPYTPSPPGTSVAQSTIPTAVIGGVVGGVALVVVVAVVLLVVLRHRRHTFKGDYSTKKHVYGNGYSKAGIPQQHPPMAQNFQYPDDSDDEKKAGPLGGNSYEDEEEDAAGGGGGDRKVGAGPNKYDDDSKRPYFTVDEGEARSDAYDERTLGFQYDPEQLDIADNMVSQNDGSFISKKEWYV
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(448995..449545,467857..468008,476034..476151,477485..477787,478946..479296,627254..627335))
location: region:448995-627335:-1
so has part: feature:627254-627335:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:448995-449545:-1:exon

XP_003222845.2
type: Protein
SIO_000068: ncbiprotein

position:448995:-1
position: 448995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627335:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:467857-468008:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:448995-449545:-1:exon

nectin1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: nectin1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nectin-1 isoform X2
translation: MAAEASPGWLRSWWATGLCLAALGPFPGLWAQMVLVNDTVSGFIGTSVILHCSMTNPSPNVKITQVTWQKATNGSKQNVAIYNPNMGVSVLQPYKERVTFRDPSTKDGTIQLSRLELEDEGVYICEFATFPTGNRENQLNLTVLAKPTNRMERTTRPLIARSGMTEKIVVATCTSSNGKPPSTVTWDTKLKGEAEFQEIRNNNGTITVTSRYRLLPSREAHRQQLMCVVNYQLDRFTDSMTLNVLYEPEVRIDGFDGNWYLNRKDVKLTCISDANPPATQYQWKLLPQTKVGMDRMNGSLPDNVEVQNSTLFFKGPVTYSLAGTYVCEASNTIGTRSGLVEVNVTEFPYTPSPPGTSVAQSTIPTAVIGGVVGGVALVVVVAVVLLVVLRHRRHTFKGDYSTKKHVYGNGYSKAGIPQQHPPMAQNFQYPDDSDDEKKAGPLGGNSYEDEEEDAAGGGGGDRKVGAGPNKYDDDSKRPYFTVDEGEARSDAYDERTLGFQYDPEQLDIADNMVSQNDGSFISKKEWYV
SIO_010081: nectin1
subclass of: SO_0000673
so part of: nectin1
location: complement(join(448995..449545,467857..468008,470057..470086,476034..476151,477485..477787,478946..479296,627254..627335))
location: region:448995-627335:-1
so has part: feature:627254-627335:-1:exon
so has part: feature:478946-479296:-1:exon
so has part: feature:477485-477787:-1:exon
so has part: feature:476034-476151:-1:exon
so has part: feature:470057-470086:-1:exon
so has part: feature:467857-468008:-1:exon
so has part: feature:448995-449545:-1:exon

XP_008111945.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:627254-627335:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478946-479296:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477485-477787:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476034-476151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:470057-470086:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:467857-468008:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:448995-449545:-1:exon

LOC107983028
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: LOC107983028
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 628268..634245
location: region:628268-634245:1
so has part: feature:628268-634245:1:exon
subclass of: SO_0000011

107983028
type: Gene
SIO_000068: ncbigene

position:628268:1
position: 628268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:634245:1
position: 634245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:628268-634245:1:exon

LOC107983028
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 28377
nc RNA class: lncRNA
gene: LOC107983028
product: uncharacterized LOC107983028
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_001730472.1
SIO_010081: LOC107983028
subclass of: SO_0000673
so part of: LOC107983028
location: join(628268..628298,631420..631641,634083..634245)
location: region:628268-634245:1
so has part: feature:628268-628298:1:exon
so has part: feature:631420-631641:1:exon
so has part: feature:634083-634245:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:628268-628298:1:exon

position:628298:1
position: 628298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:631420-631641:1:exon

position:631420:1
position: 631420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:631641:1
position: 631641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:634083-634245:1:exon

position:634083:1
position: 634083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC103279295
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: LOC103279295
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1002170..1011677
location: region:1002170-1011677:1
so has part: feature:1002170-1011677:1:exon
subclass of: SO_0000010

103279295
type: Gene
SIO_000068: ncbigene

position:1002170:1
position: 1002170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1011677:1
position: 1011677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1002170-1011677:1:exon

LOC103279295
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: LOC103279295
product: rab5 GDP/GTP exchange factor-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016994725.1
SIO_010081: LOC103279295
subclass of: SO_0000673
so part of: LOC103279295
location: join(1002170..1002174,1010652..1011677)
location: region:1002170-1011677:1
so has part: feature:1002170-1002174:1:exon
so has part: feature:1010652-1011677:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1002170-1002174:1:exon

position:1002174:1
position: 1002174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1010652-1011677:1:exon

position:1010652:1
position: 1010652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC103279295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: LOC103279295
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:1010893..1010895,aa:OTHER)
product: LOW QUALITY PROTEIN: rab5 GDP/GTP exchange factor-like
translation: MRKEGRKYGRKEGRKEGRKPLTISKFEEKKTNKKSKKFTTVKKFFKASISHQVSLEMDRVSKDFMEFLKPYQKLVQEIYKQCXLFLEHMNHKQELSIEEQSKYVQDFYQNVAEKLQTSWKVSPEKVKKVMDWIYSVVAGLFT
SIO_010081: LOC103279295
subclass of: SO_0000673
so part of: LOC103279295
location: join(1002170..1002174,1010652..1011075)
location: region:1002170-1011075:1
so has part: feature:1002170-1002174:1:exon
so has part: feature:1010652-1011075:1:exon

XP_016850214.1
type: Protein
SIO_000068: ncbiprotein

position:1011075:1
position: 1011075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1002170-1002174:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1010652-1011075:1:exon

trim29
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: trim29
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1089126..1142985)
location: region:1089126-1142985:-1
so has part: feature:1089126-1142985:-1:exon
subclass of: SO_0000010

100565182
type: Gene
SIO_000068: ncbigene

position:1089126:-1
position: 1089126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1142985:-1
position: 1142985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1089126-1142985:-1:exon

trim29
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: trim29
product: tripartite motif containing 29, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_016994712.1
SIO_010081: trim29
subclass of: SO_0000673
so part of: trim29
location: complement(join(1089126..1090467,1105633..1105728,1107252..1107338,1112793..1112991,1113693..1113926,1117905..1118000,1141930..1142985))
location: region:1089126-1142985:-1
so has part: feature:1141930-1142985:-1:exon
so has part: feature:1117905-1118000:-1:exon
so has part: feature:1113693-1113926:-1:exon
so has part: feature:1112793-1112991:-1:exon
so has part: feature:1107252-1107338:-1:exon
so has part: feature:1105633-1105728:-1:exon
so has part: feature:1089126-1090467:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1141930-1142985:-1:exon

position:1141930:-1
position: 1141930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1117905-1118000:-1:exon

position:1117905:-1
position: 1117905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1118000:-1
position: 1118000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1113693-1113926:-1:exon

position:1113693:-1
position: 1113693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1113926:-1
position: 1113926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1112793-1112991:-1:exon

position:1112793:-1
position: 1112793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1112991:-1
position: 1112991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1107252-1107338:-1:exon

position:1107252:-1
position: 1107252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1107338:-1
position: 1107338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1105633-1105728:-1:exon

position:1105633:-1
position: 1105633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1105728:-1
position: 1105728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1089126-1090467:-1:exon

position:1090467:-1
position: 1090467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

trim29
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: trim29
product: tripartite motif containing 29, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_016994710.1
SIO_010081: trim29
subclass of: SO_0000673
so part of: trim29
location: complement(join(1089126..1090467,1096724..1096803,1097086..1097187,1105633..1105728,1107252..1107338,1112793..1112991,1113693..1113926,1117905..1118000,1141930..1142981))
location: region:1089126-1142981:-1
so has part: feature:1141930-1142981:-1:exon
so has part: feature:1117905-1118000:-1:exon
so has part: feature:1113693-1113926:-1:exon
so has part: feature:1112793-1112991:-1:exon
so has part: feature:1107252-1107338:-1:exon
so has part: feature:1105633-1105728:-1:exon
so has part: feature:1097086-1097187:-1:exon
so has part: feature:1096724-1096803:-1:exon
so has part: feature:1089126-1090467:-1:exon

position:1142981:-1
position: 1142981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1141930-1142981:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1117905-1118000:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1113693-1113926:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1112793-1112991:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1107252-1107338:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1105633-1105728:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1097086-1097187:-1:exon

position:1097086:-1
position: 1097086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1097187:-1
position: 1097187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1096724-1096803:-1:exon

position:1096724:-1
position: 1096724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1096803:-1
position: 1096803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1089126-1090467:-1:exon

trim29
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: trim29
product: tripartite motif containing 29, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_016994711.1
SIO_010081: trim29
subclass of: SO_0000673
so part of: trim29
location: complement(join(1089126..1090467,1096724..1096803,1105633..1105728,1107252..1107338,1112793..1112991,1113693..1113926,1117905..1118000,1141930..1142979))
location: region:1089126-1142979:-1
so has part: feature:1141930-1142979:-1:exon
so has part: feature:1117905-1118000:-1:exon
so has part: feature:1113693-1113926:-1:exon
so has part: feature:1112793-1112991:-1:exon
so has part: feature:1107252-1107338:-1:exon
so has part: feature:1105633-1105728:-1:exon
so has part: feature:1096724-1096803:-1:exon
so has part: feature:1089126-1090467:-1:exon

position:1142979:-1
position: 1142979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1141930-1142979:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1117905-1118000:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1113693-1113926:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1112793-1112991:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1107252-1107338:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1105633-1105728:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1096724-1096803:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1089126-1090467:-1:exon

trim29
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: trim29
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tripartite motif-containing protein 29 isoform X3
translation: METARTNGTTGKPEEGKNSTSPKKEGEEGKKATSPNRGEKDTNKNNASVETGQLKNSIYAGGDWKRPIIQFVESSDEKRSTYFNMESGESKKSNFPNVQLGEPRRAQVSFPERGDLRKSLFNMEAKKPFANEGEEKKSLYSSGAIADLRKPIASLRESGEAKRNNYNRPSRSPTSRPRILEEVLCDSCIDNKQKAVKSCLVCQASFCELHLKPHLEGAAFRDHQLLDPIKDFEARKCPVHGKTMELFCQTDQVCICYLCMFQEHKNHTTVTVEIEKSGKETELSLQKEQLQLKIIELEDEVDKWHKERDRIKNFTTNEKATVDQHFKELIRDLEKQRDEVKAGLDHREKVAVENIKEIVEELEERTKLLQEDKETREQISQISDSVLFLQEFGAMMRNYTIPPSLPTYSILLEGENMSPSMGVLRDDLLNVCMRHVEKICKADLSRNFIERNHMENGDHRFMINNYSDWNQPDSLKRFSMFLNPKGGNYNSRSWEFSTMQTAAEETLATGNSAFSLKVPLPPFLREQGQWSHFQRSSVISEIHGSG
SIO_010081: trim29
subclass of: SO_0000673
so part of: trim29
location: complement(join(1090379..1090467,1105633..1105728,1107252..1107338,1112793..1112991,1113693..1113926,1117905..1118000,1141930..1142769))
location: region:1090379-1142769:-1
so has part: feature:1141930-1142769:-1:exon
so has part: feature:1117905-1118000:-1:exon
so has part: feature:1113693-1113926:-1:exon
so has part: feature:1112793-1112991:-1:exon
so has part: feature:1107252-1107338:-1:exon
so has part: feature:1105633-1105728:-1:exon
so has part: feature:1090379-1090467:-1:exon

XP_016850201.1
type: Protein
SIO_000068: ncbiprotein

position:1090379:-1
position: 1090379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1142769:-1
position: 1142769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1141930-1142769:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1117905-1118000:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1113693-1113926:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1112793-1112991:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1107252-1107338:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1105633-1105728:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1090379-1090467:-1:exon

trim29
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: trim29
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tripartite motif-containing protein 29 isoform X2
translation: METARTNGTTGKPEEGKNSTSPKKEGEEGKKATSPNRGEKDTNKNNASVETGQLKNSIYAGGDWKRPIIQFVESSDEKRSTYFNMESGESKKSNFPNVQLGEPRRAQVSFPERGDLRKSLFNMEAKKPFANEGEEKKSLYSSGAIADLRKPIASLRESGEAKRNNYNRPSRSPTSRPRILEEVLCDSCIDNKQKAVKSCLVCQASFCELHLKPHLEGAAFRDHQLLDPIKDFEARKCPVHGKTMELFCQTDQVCICYLCMFQEHKNHTTVTVEIEKSGKETELSLQKEQLQLKIIELEDEVDKWHKERDRIKNFTTNEKATVDQHFKELIRDLEKQRDEVKAGLDHREKVAVENIKEIVEELEERTKLLQEDKETREQISQISDSVLFLQEFGAMMRNYTIPPSLPTYSILLEGENMSPSMGVLRDDLLNVCMRHVEKICKADLSRNFIERNHMENGDHRFMINNYSDWNQPDSLKRFSMFLNPKGGNYNSRSWEFSTMQTAAEETLATGNSAFSLKAYPSIVRHQTASKAQPQTWKSSKQSMLSHYRPFYVNKGNGVTSNEAP
SIO_010081: trim29
subclass of: SO_0000673
so part of: trim29
location: complement(join(1090405..1090467,1096724..1096803,1105633..1105728,1107252..1107338,1112793..1112991,1113693..1113926,1117905..1118000,1141930..1142769))
location: region:1090405-1142769:-1
so has part: feature:1141930-1142769:-1:exon
so has part: feature:1117905-1118000:-1:exon
so has part: feature:1113693-1113926:-1:exon
so has part: feature:1112793-1112991:-1:exon
so has part: feature:1107252-1107338:-1:exon
so has part: feature:1105633-1105728:-1:exon
so has part: feature:1096724-1096803:-1:exon
so has part: feature:1090405-1090467:-1:exon

XP_016850200.1
type: Protein
SIO_000068: ncbiprotein

position:1090405:-1
position: 1090405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1141930-1142769:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1117905-1118000:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1113693-1113926:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1112793-1112991:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1107252-1107338:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1105633-1105728:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1096724-1096803:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1090405-1090467:-1:exon

trim29
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: trim29
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tripartite motif-containing protein 29 isoform X1
translation: METARTNGTTGKPEEGKNSTSPKKEGEEGKKATSPNRGEKDTNKNNASVETGQLKNSIYAGGDWKRPIIQFVESSDEKRSTYFNMESGESKKSNFPNVQLGEPRRAQVSFPERGDLRKSLFNMEAKKPFANEGEEKKSLYSSGAIADLRKPIASLRESGEAKRNNYNRPSRSPTSRPRILEEVLCDSCIDNKQKAVKSCLVCQASFCELHLKPHLEGAAFRDHQLLDPIKDFEARKCPVHGKTMELFCQTDQVCICYLCMFQEHKNHTTVTVEIEKSGKETELSLQKEQLQLKIIELEDEVDKWHKERDRIKNFTTNEKATVDQHFKELIRDLEKQRDEVKAGLDHREKVAVENIKEIVEELEERTKLLQEDKETREQISQISDSVLFLQEFGAMMRNYTIPPSLPTYSILLEGENMSPSMGVLRDDLLNVCMRHVEKICKADLSRNFIERNHMENGDHRFMINNYSDWNQPDSLKRFSMFLNPKGGNYNSRSWEFSTMQTAAEETLATGNSAFSLKVGNVTKMPYQFSPIGQSSPGDFSKHSDGSLYTKNAYPSIVRHQTASKAQPQTWKSSKQSMLSHYRPFYVNKGNGVTSNEAP
SIO_010081: trim29
subclass of: SO_0000673
so part of: trim29
location: complement(join(1090405..1090467,1096724..1096803,1097086..1097187,1105633..1105728,1107252..1107338,1112793..1112991,1113693..1113926,1117905..1118000,1141930..1142769))
location: region:1090405-1142769:-1
so has part: feature:1141930-1142769:-1:exon
so has part: feature:1117905-1118000:-1:exon
so has part: feature:1113693-1113926:-1:exon
so has part: feature:1112793-1112991:-1:exon
so has part: feature:1107252-1107338:-1:exon
so has part: feature:1105633-1105728:-1:exon
so has part: feature:1097086-1097187:-1:exon
so has part: feature:1096724-1096803:-1:exon
so has part: feature:1090405-1090467:-1:exon

XP_016850199.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1141930-1142769:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1117905-1118000:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1113693-1113926:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1112793-1112991:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1107252-1107338:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1105633-1105728:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1097086-1097187:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1096724-1096803:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1090405-1090467:-1:exon

oaf
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: oaf
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <1194413..1225626
location: region:1194413-1225626:1
so has part: feature:1194413-1225626:1:exon
subclass of: SO_0000010

100565380
type: Gene
SIO_000068: ncbigene

position:1194413:1
position: 1194413
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:1225626:1
position: 1225626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1194413-1225626:1:exon

oaf
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: oaf
product: out at first homolog
inference: similar to RNA sequence, mRNA (same species):INSD:GADO01059613.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 167 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_003222799.2
SIO_010081: oaf
subclass of: SO_0000673
so part of: oaf
location: join(<1194413..1194793,1218292..1218426,1221608..1221788,1224451..1225626)
location: region:1194413-1225626:1
so has part: feature:1194413-1194793:1:exon
so has part: feature:1218292-1218426:1:exon
so has part: feature:1221608-1221788:1:exon
so has part: feature:1224451-1225626:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1194413-1194793:1:exon

position:1194793:1
position: 1194793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1218292-1218426:1:exon

position:1218292:1
position: 1218292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1218426:1
position: 1218426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1221608-1221788:1:exon

position:1221608:1
position: 1221608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1221788:1
position: 1221788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1224451-1225626:1:exon

position:1224451:1
position: 1224451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

oaf
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: oaf
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: out at first protein homolog
translation: MRRQRRSIPWVLLAPLLLGLPLGEAAPAALPSELRVRVRLPDGGVTEESLQADSGADCVTLELRKGDGTLVTLAADFKQEVKIFRALILGELERGQSQFQALCFVTRLHRNEIIPSESMAKLRQKNPQTVRQAEEVRALEHLSMDVAVNFSKGAQLSSHIYNVCSEAKEAIYTREEDVKFWLEKGVDGSMFEVLPQSTDLPDLQRCRLCADRWKPCICSYGLSIEWYPCMLKYCKNRDAAGKVSSYKCGIRSCQKAYSFDYYVPQKQLCLWDEET
SIO_010081: oaf
subclass of: SO_0000673
so part of: oaf
location: join(1194557..1194793,1218292..1218426,1221608..1221788,1224451..1224725)
location: region:1194557-1224725:1
so has part: feature:1194557-1194793:1:exon
so has part: feature:1218292-1218426:1:exon
so has part: feature:1221608-1221788:1:exon
so has part: feature:1224451-1224725:1:exon

XP_003222847.1
type: Protein
SIO_000068: ncbiprotein

position:1194557:1
position: 1194557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1224725:1
position: 1224725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1194557-1194793:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1218292-1218426:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1221608-1221788:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1224451-1224725:1:exon

pou2f3
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: pou2f3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1234218..1345884
location: region:1234218-1345884:1
so has part: feature:1234218-1345884:1:exon
subclass of: SO_0000010

100565579
type: Gene
SIO_000068: ncbigene

position:1234218:1
position: 1234218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1345884:1
position: 1345884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1234218-1345884:1:exon

pou2f3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: pou2f3
product: POU class 2 homeobox 3
inference: similar to RNA sequence, mRNA (same species):INSD:GAFK01067819.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 12 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_008113764.2
SIO_010081: pou2f3
subclass of: SO_0000673
so part of: pou2f3
location: join(1234218..1234474,1252187..1252255,1288225..1288259,1316547..1316651,1321557..>1321650,<1329051..1329121,1333830..1334015,1335989..1336130,1340066..1340202,1340502..1340663,1341681..1341747,1342626..1342758,1344510..1345884)
location: region:1234218-1345884:1
so has part: feature:1234218-1234474:1:exon
so has part: feature:1252187-1252255:1:exon
so has part: feature:1288225-1288259:1:exon
so has part: feature:1316547-1316651:1:exon
so has part: feature:1321557-1321650:1:exon
so has part: feature:1329051-1329121:1:exon
so has part: feature:1333830-1334015:1:exon
so has part: feature:1335989-1336130:1:exon
so has part: feature:1340066-1340202:1:exon
so has part: feature:1340502-1340663:1:exon
so has part: feature:1341681-1341747:1:exon
so has part: feature:1342626-1342758:1:exon
so has part: feature:1344510-1345884:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1234218-1234474:1:exon

position:1234474:1
position: 1234474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1252187-1252255:1:exon

position:1252187:1
position: 1252187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1252255:1
position: 1252255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1288225-1288259:1:exon

position:1288225:1
position: 1288225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1288259:1
position: 1288259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1316547-1316651:1:exon

position:1316547:1
position: 1316547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1316651:1
position: 1316651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1321557-1321650:1:exon

position:1321557:1
position: 1321557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1321650:1
position: 1321650
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1329051-1329121:1:exon

position:1329051:1
position: 1329051
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:1329121:1
position: 1329121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1333830-1334015:1:exon

position:1333830:1
position: 1333830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1334015:1
position: 1334015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1335989-1336130:1:exon

position:1335989:1
position: 1335989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1336130:1
position: 1336130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1340066-1340202:1:exon

position:1340066:1
position: 1340066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1340202:1
position: 1340202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1340502-1340663:1:exon

position:1340502:1
position: 1340502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1340663:1
position: 1340663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1341681-1341747:1:exon

position:1341681:1
position: 1341681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1341747:1
position: 1341747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1342626-1342758:1:exon

position:1342626:1
position: 1342626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1342758:1
position: 1342758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1344510-1345884:1:exon

position:1344510:1
position: 1344510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

pou2f3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: pou2f3
inference: similar to RNA sequence, mRNA (same species):INSD:GAFK01067819.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 12 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: POU domain, class 2, transcription factor 3
translation: MVNLDPVHADIKMSENVADSTDTRHEGSHLEAGIERNGLDFNRQIKTEDLSDSLQAAIPSRSSHLPQGPSMMPGGQITGDMSSLHTLQQLVQVPGHVQSVPFFLLSQSQQALPSNILSFPQQQRGLLLPQHGHSLTSQTVGRPSHPGSSSLDPHMEVPQHLQVANHLPPSMANDEANPPEELEKFAKTFKQRRINLGFPQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLSDAENSPLDSSVSSPANYPAVNEMFGRKRKKRTSIETNIRSTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRISCPMPSPIKSPLYNSRLVSTSGSLGPLSVAPVHSTMHGTVTSSCSPGSSSRPQSPGTGLHSNSPGMSHNNSKAAINSSSFNSSGSWYRWNQPTYLH
SIO_010081: pou2f3
subclass of: SO_0000673
so part of: pou2f3
location: join(1234447..1234474,1252187..1252255,1288225..1288259,1316547..1316651,1321557..>1321650,<1329051..1329121,1333830..1334015,1335989..1336130,1340066..1340202,1340502..1340663,1341681..1341747,1342626..1342758,1344510..1344549)
location: region:1234447-1344549:1
so has part: feature:1234447-1234474:1:exon
so has part: feature:1252187-1252255:1:exon
so has part: feature:1288225-1288259:1:exon
so has part: feature:1316547-1316651:1:exon
so has part: feature:1321557-1321650:1:exon
so has part: feature:1329051-1329121:1:exon
so has part: feature:1333830-1334015:1:exon
so has part: feature:1335989-1336130:1:exon
so has part: feature:1340066-1340202:1:exon
so has part: feature:1340502-1340663:1:exon
so has part: feature:1341681-1341747:1:exon
so has part: feature:1342626-1342758:1:exon
so has part: feature:1344510-1344549:1:exon

XP_008111971.1
type: Protein
SIO_000068: ncbiprotein

position:1234447:1
position: 1234447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1344549:1
position: 1344549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1234447-1234474:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1252187-1252255:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1288225-1288259:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1316547-1316651:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1321557-1321650:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1329051-1329121:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1333830-1334015:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1335989-1336130:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1340066-1340202:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1340502-1340663:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1341681-1341747:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1342626-1342758:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1344510-1344549:1:exon

LOC100565773
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: LOC100565773
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1349982..1377473
location: region:1349982-1377473:1
so has part: feature:1349982-1377473:1:exon
subclass of: SO_0000010

100565773
type: Gene
SIO_000068: ncbigene

position:1349982:1
position: 1349982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1377473:1
position: 1377473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1349982-1377473:1:exon

LOC100565773
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: LOC100565773
product: transmembrane protein 136
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003222801.3
SIO_010081: LOC100565773
subclass of: SO_0000673
so part of: LOC100565773
location: join(1349982..1350310,1367028..1367233,1376303..1377473)
location: region:1349982-1377473:1
so has part: feature:1349982-1350310:1:exon
so has part: feature:1367028-1367233:1:exon
so has part: feature:1376303-1377473:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1349982-1350310:1:exon

position:1350310:1
position: 1350310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1367028-1367233:1:exon

position:1367028:1
position: 1367028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1367233:1
position: 1367233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1376303-1377473:1:exon

position:1376303:1
position: 1376303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC103279296
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: LOC103279296
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1361021..1367065)
location: region:1361021-1367065:-1
so has part: feature:1361021-1367065:-1:exon
subclass of: SO_0000011

103279296
type: Gene
SIO_000068: ncbigene

position:1361021:-1
position: 1361021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1367065:-1
position: 1367065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1361021-1367065:-1:exon

LOC103279296
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 28377
nc RNA class: lncRNA
gene: LOC103279296
product: uncharacterized LOC103279296
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_506690.2
SIO_010081: LOC103279296
subclass of: SO_0000673
so part of: LOC103279296
location: complement(join(1361021..1361494,1363460..1363590,1366979..1367065))
location: region:1361021-1367065:-1
so has part: feature:1366979-1367065:-1:exon
so has part: feature:1363460-1363590:-1:exon
so has part: feature:1361021-1361494:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1366979-1367065:-1:exon

position:1366979:-1
position: 1366979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1363460-1363590:-1:exon

position:1363460:-1
position: 1363460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1363590:-1
position: 1363590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1361021-1361494:-1:exon

position:1361494:-1
position: 1361494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100565773
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: LOC100565773
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 136
translation: MFAIVARVVCSFLLWLSFYVAIRSWNKSRTPEWTVRLITLMHGLIVTFLSGYIALIDGPWPLTHPGHPNTPLQITLLCLSLGYFFFDFGWCVYYNSEDELMIYHHILCISGMGGVLVMGVSGSEINALIFVAEITNPLLQIRWFLRDMGHYEGMAGEVVDTLFVLLFLGLRIGGGVWIVLAVLTSAKPNWEVKAGVLLMYFVSIVFAWDIVKFVKRKMMKKYEACRKERTERERSKSNGHVLGHQTNHDTQPTNGVL
SIO_010081: LOC100565773
subclass of: SO_0000673
so part of: LOC100565773
location: join(1367038..1367233,1376303..1376880)
location: region:1367038-1376880:1
so has part: feature:1367038-1367233:1:exon
so has part: feature:1376303-1376880:1:exon

XP_003222849.1
type: Protein
SIO_000068: ncbiprotein

position:1367038:1
position: 1367038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1376880:1
position: 1376880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1367038-1367233:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1376303-1376880:1:exon

tmem136
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: tmem136
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1388892..1394251
location: region:1388892-1394251:1
so has part: feature:1388892-1394251:1:exon
subclass of: SO_0000010

100565972
type: Gene
SIO_000068: ncbigene

position:1388892:1
position: 1388892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1394251:1
position: 1394251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1388892-1394251:1:exon

tmem136
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: tmem136
product: transmembrane protein 136
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_008113745.2
SIO_010081: tmem136
subclass of: SO_0000673
so part of: tmem136
location: join(1388892..1389344,1391117..1391316,1392982..1394251)
location: region:1388892-1394251:1
so has part: feature:1388892-1389344:1:exon
so has part: feature:1391117-1391316:1:exon
so has part: feature:1392982-1394251:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1388892-1389344:1:exon

position:1389344:1
position: 1389344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1391117-1391316:1:exon

position:1391117:1
position: 1391117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1391316:1
position: 1391316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1392982-1394251:1:exon

position:1392982:1
position: 1392982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tmem136
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: tmem136
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 136
translation: MGGCPQAKRLSSSPLLLGCQGVALRPPRQQVTLRRALLRLRRVAAWRRVLLFGGVVIEEGERDASFLAKGGCEGTQGASQAERTAALGLVGQVTSPKTSMVASMVLRVALSLVGWLSLYTWSYRRHKDRTCEWSCRLVTLTHGVLATCLSGYIGFIDGPWPMSYPGSPNTTLQVHALCMSLGYFLFDLGWCVYFKAEGALMLAHHTVSILGITVSLALGESAAEVNGVIFGSEITNPLLQARWFLRQVGLYHTLIGDVVDFFFVVLFAGVRIGVGAWLMYCVLTSPKPKWFIKAGGVIMYAVSCVFLVSICQFVRRKSIRKYHAWRSWWNKEMNLSANGYLKEH
SIO_010081: tmem136
subclass of: SO_0000673
so part of: tmem136
location: join(1389049..1389344,1391117..1391316,1392982..1393520)
location: region:1389049-1393520:1
so has part: feature:1389049-1389344:1:exon
so has part: feature:1391117-1391316:1:exon
so has part: feature:1392982-1393520:1:exon

XP_008111952.2
type: Protein
SIO_000068: ncbiprotein

position:1389049:1
position: 1389049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1393520:1
position: 1393520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1389049-1389344:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1391117-1391316:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1392982-1393520:1:exon

arhgef12
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: arhgef12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <1404186..1486644
location: region:1404186-1486644:1
so has part: feature:1404186-1486644:1:exon
subclass of: SO_0000010

100566171
type: Gene
SIO_000068: ncbigene

position:1404186:1
position: 1404186
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:1486644:1
position: 1486644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1404186-1486644:1:exon

arhgef12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: arhgef12
product: Rho guanine nucleotide exchange factor 12, transcript variant X1
inference: similar to RNA sequence (same species):INSD:GAFZ01052926.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1179 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_016994713.1
SIO_010081: arhgef12
subclass of: SO_0000673
so part of: arhgef12
location: join(<1404186..1404749,1426487..1426510,1427415..1427503,1429756..1429812,1434643..1434741,1436005..1436054,1436654..1436711,1437553..1437731,1438186..1438263,1438916..1439035,1439727..1439861,1442705..1442776,1443997..1444089,1444260..1444370,1445113..1445211,1445744..1445786,1446037..1446142,1446532..1446669,1447859..1447891,1448630..1448750,1450130..1450232,1450660..1450869,1451253..1451385,1451754..1451789,1452974..1453128,1454313..1454459,1454811..1454896,1455611..1455736,1456556..1456670,1466915..1467015,1467177..1467254,1468719..1468794,1469159..1469326,1470530..1470617,1473388..1473471,1473675..1473748,1474562..1474768,1476545..1477006,1478136..1478458,1479648..1479717,1482068..1486644)
location: region:1404186-1486644:1
so has part: feature:1404186-1404749:1:exon
so has part: feature:1426487-1426510:1:exon
so has part: feature:1427415-1427503:1:exon
so has part: feature:1429756-1429812:1:exon
so has part: feature:1434643-1434741:1:exon
so has part: feature:1436005-1436054:1:exon
so has part: feature:1436654-1436711:1:exon
so has part: feature:1437553-1437731:1:exon
so has part: feature:1438186-1438263:1:exon
so has part: feature:1438916-1439035:1:exon
so has part: feature:1439727-1439861:1:exon
so has part: feature:1442705-1442776:1:exon
so has part: feature:1443997-1444089:1:exon
so has part: feature:1444260-1444370:1:exon
so has part: feature:1445113-1445211:1:exon
so has part: feature:1445744-1445786:1:exon
so has part: feature:1446037-1446142:1:exon
so has part: feature:1446532-1446669:1:exon
so has part: feature:1447859-1447891:1:exon
so has part: feature:1448630-1448750:1:exon
so has part: feature:1450130-1450232:1:exon
so has part: feature:1450660-1450869:1:exon
so has part: feature:1451253-1451385:1:exon
so has part: feature:1451754-1451789:1:exon
so has part: feature:1452974-1453128:1:exon
so has part: feature:1454313-1454459:1:exon
so has part: feature:1454811-1454896:1:exon
so has part: feature:1455611-1455736:1:exon
so has part: feature:1456556-1456670:1:exon
so has part: feature:1466915-1467015:1:exon
so has part: feature:1467177-1467254:1:exon
so has part: feature:1468719-1468794:1:exon
so has part: feature:1469159-1469326:1:exon
so has part: feature:1470530-1470617:1:exon
so has part: feature:1473388-1473471:1:exon
so has part: feature:1473675-1473748:1:exon
so has part: feature:1474562-1474768:1:exon
so has part: feature:1476545-1477006:1:exon
so has part: feature:1478136-1478458:1:exon
so has part: feature:1479648-1479717:1:exon
so has part: feature:1482068-1486644:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1404186-1404749:1:exon

position:1404749:1
position: 1404749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1426487-1426510:1:exon

position:1426487:1
position: 1426487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1426510:1
position: 1426510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1427415-1427503:1:exon

position:1427415:1
position: 1427415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1427503:1
position: 1427503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1429756-1429812:1:exon

position:1429756:1
position: 1429756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1429812:1
position: 1429812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1434643-1434741:1:exon

position:1434643:1
position: 1434643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1434741:1
position: 1434741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1436005-1436054:1:exon

position:1436005:1
position: 1436005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1436054:1
position: 1436054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1436654-1436711:1:exon

position:1436654:1
position: 1436654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1436711:1
position: 1436711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1437553-1437731:1:exon

position:1437553:1
position: 1437553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1437731:1
position: 1437731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1438186-1438263:1:exon

position:1438186:1
position: 1438186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1438263:1
position: 1438263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1438916-1439035:1:exon

position:1438916:1
position: 1438916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1439035:1
position: 1439035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1439727-1439861:1:exon

position:1439727:1
position: 1439727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1439861:1
position: 1439861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1442705-1442776:1:exon

position:1442705:1
position: 1442705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1442776:1
position: 1442776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1443997-1444089:1:exon

position:1443997:1
position: 1443997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1444089:1
position: 1444089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1444260-1444370:1:exon

position:1444260:1
position: 1444260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1444370:1
position: 1444370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1445113-1445211:1:exon

position:1445113:1
position: 1445113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1445211:1
position: 1445211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1445744-1445786:1:exon

position:1445744:1
position: 1445744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1445786:1
position: 1445786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1446037-1446142:1:exon

position:1446037:1
position: 1446037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1446142:1
position: 1446142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1446532-1446669:1:exon

position:1446532:1
position: 1446532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1446669:1
position: 1446669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1447859-1447891:1:exon

position:1447859:1
position: 1447859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1447891:1
position: 1447891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1448630-1448750:1:exon

position:1448630:1
position: 1448630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1448750:1
position: 1448750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1450130-1450232:1:exon

position:1450130:1
position: 1450130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1450232:1
position: 1450232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1450660-1450869:1:exon

position:1450660:1
position: 1450660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1450869:1
position: 1450869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1451253-1451385:1:exon

position:1451253:1
position: 1451253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1451385:1
position: 1451385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1451754-1451789:1:exon

position:1451754:1
position: 1451754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1451789:1
position: 1451789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1452974-1453128:1:exon

position:1452974:1
position: 1452974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1453128:1
position: 1453128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:1454313-1454459:1:exon

position:1454313:1
position: 1454313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1454459:1
position: 1454459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:1454811-1454896:1:exon

position:1454811:1
position: 1454811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1454896:1
position: 1454896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:1455611-1455736:1:exon

position:1455611:1
position: 1455611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1455736:1
position: 1455736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:1456556-1456670:1:exon

position:1456556:1
position: 1456556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1456670:1
position: 1456670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:1466915-1467015:1:exon

position:1466915:1
position: 1466915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1467015:1
position: 1467015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
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type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: arhgef12
product: Rho guanine nucleotide exchange factor 12, transcript variant X3
inference: similar to RNA sequence (same species):INSD:GAFZ01052926.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1179 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_016994715.1
SIO_010081: arhgef12
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SIO_000300: 41
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arhgef12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: arhgef12
product: Rho guanine nucleotide exchange factor 12, transcript variant X2
inference: similar to RNA sequence (same species):INSD:GAFZ01052926.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1179 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_016994714.1
SIO_010081: arhgef12
subclass of: SO_0000673
so part of: arhgef12
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arhgef12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: arhgef12
product: Rho guanine nucleotide exchange factor 12, transcript variant X4
inference: similar to RNA sequence (same species):INSD:GAFZ01052926.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1179 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_016994716.1
SIO_010081: arhgef12
subclass of: SO_0000673
so part of: arhgef12
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arhgef12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: arhgef12
product: Rho guanine nucleotide exchange factor 12, transcript variant X5
inference: similar to RNA sequence (same species):INSD:GAFZ01052926.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1179 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_016994717.1
SIO_010081: arhgef12
subclass of: SO_0000673
so part of: arhgef12
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position:1466359:1
position: 1466359
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urn:…
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urn:…
SIO_000300: 33
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urn:…
SIO_000300: 34
SIO_000628: feature:1460705-1460792:1:exon

position:1460705:1
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position:1460792:1
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urn:…
SIO_000300: 35
SIO_000628: feature:1463550-1463633:1:exon

position:1463550:1
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position:1463633:1
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urn:…
SIO_000300: 36
SIO_000628: feature:1463837-1463910:1:exon

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position:1463910:1
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position:1465886:1
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arhgef12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: arhgef12
product: Rho guanine nucleotide exchange factor 12, transcript variant X6
inference: similar to RNA sequence (same species):INSD:GAFZ01052926.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1179 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_016994718.1
SIO_010081: arhgef12
subclass of: SO_0000673
so part of: arhgef12
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location: region:1404186-1466358:1
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position:1466358:1
position: 1466358
reference: sequence
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urn:…
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arhgef12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: arhgef12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rho guanine nucleotide exchange factor 12 isoform X1
translation: MSGSQSAITDRFPLRRPTRHGSILSRESPADKKQKVERCISAHDFDPTDSSSRKTKCSSDESRSETYGLVQRCVIIQRDENGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIKSGSYVALTVQGRPPGSPQIPLADSELDPAAFGHMSPIMTSPHSPGASGNTERITSPVLMGEENNIVHSQKVEILRKMLQKEQERLQSLQEDYSRSPASQLLKEIQEAKKHIPQLQEQLSKATGSIQDGVLSSKSVMESLQISEIEAERGDGLNRGDGSFGDSSHMNSDTAESPRSGLRERMSLEESPEKSETQDTDSQSSIGSPSSRMAPPIIGAEDDDFDGEQEQINGQCSCFQNIELLKSRPAHLAVFLHHVVSQFDPASLLCYLFADLYKQTNSKETRRVFAEFNQFFLDKSANLKVPIPDEISVDLEKRRLDLIPEELHRHYIHTMQEKVLPEVHRHLEDFRQKRSMGLTLAEGELTRLDAERIRDRTTQEKERVCAEQIISKIEEVLMTSQPIEEEKSSSIQYVVLTYMKHLGVRVKEPRSLDQKRGRIGFLPKIKVKQSIKKEKEGDEKKRRVFPNILGPPRRPSRHDSYAIGRAMEIQKQRHPKHLSSSSSISPEPPESARMRQSSSIESTDAAHPPANLVSPLAAGSSPSQEGSKDSEAGSKQVGETPPSGDSVDGTPRTTNTIFDFPSPPLDHLLEEEGDFDRLAESGTPKSFRKMDSVGAGDIQSEDELFEFDMETDPPNWQQLVSREVLLGLKPSEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGILPHSELRKIFSNLEDILQLHAGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGAGEDKLKQATATFCSNQPFALEVIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTEMQRLTKYPLLLDNIAKYSEQPGEKEKVKKAADHCRQILNFVNQAVKEAENKQHLEDYQRRLDLSYLKQLEGPMLEEFRNLDLTRKKMIHEGPLTWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILANAADSKHTFSPVIKLNTVLVRQVATDNKAFFVISMSENGAHIYELVAQTVSEKTVWQELIARMAGTVKVGRRVIPLHPPGPCEEDHEEEDQKLKEEQTTPESSMQSPDKDLELESPSATASEKAEAEELLEADRRFREKAPGDLLIKESSDSFTHTGPELLFQISEDRWALDALRNLGLLKKLLMQQLGMTEQESPEDRQRFSRHRAVSQGVQVEKSVLRGQQHSEKDRASLPGVSRMPSGMGTSSFEPCSGHRTSGEFVQVGDTTPNSSQLTDPLSTNPETPIAELEGVTAEDGGEHFFDAREAHSDENHSEGEVTERKDVEEVQLRISGNFLILDDYGAAQESSTDEEVASLVLRCTAGKSAMDSAPQAPASPQEAQQPDPGASSPFAAREVEPSHWEATKEPSSSEVLRPPFSPESRSLIMHYIQKIEANLEHLKEVEENYATLQQRLAGSVPTDEHSDKS
SIO_010081: arhgef12
subclass of: SO_0000673
so part of: arhgef12
location: join(1404718..1404749,1426487..1426510,1427415..1427503,1429756..1429812,1434643..1434741,1436005..1436054,1436654..1436711,1437553..1437731,1438186..1438263,1438916..1439035,1439727..1439861,1442705..1442776,1443997..1444089,1444260..1444370,1445113..1445211,1445744..1445786,1446037..1446142,1446532..1446669,1447859..1447891,1448630..1448750,1450130..1450232,1450660..1450869,1451253..1451385,1451754..1451789,1452974..1453128,1454313..1454459,1454811..1454896,1455611..1455736,1456556..1456670,1466915..1467015,1467177..1467254,1468719..1468794,1469159..1469326,1470530..1470617,1473388..1473471,1473675..1473748,1474562..1474768,1476545..1477006,1478136..1478458,1479648..1479717,1482068..1482078)
location: region:1404718-1482078:1
so has part: feature:1404718-1404749:1:exon
so has part: feature:1426487-1426510:1:exon
so has part: feature:1427415-1427503:1:exon
so has part: feature:1429756-1429812:1:exon
so has part: feature:1434643-1434741:1:exon
so has part: feature:1436005-1436054:1:exon
so has part: feature:1436654-1436711:1:exon
so has part: feature:1437553-1437731:1:exon
so has part: feature:1438186-1438263:1:exon
so has part: feature:1438916-1439035:1:exon
so has part: feature:1439727-1439861:1:exon
so has part: feature:1442705-1442776:1:exon
so has part: feature:1443997-1444089:1:exon
so has part: feature:1444260-1444370:1:exon
so has part: feature:1445113-1445211:1:exon
so has part: feature:1445744-1445786:1:exon
so has part: feature:1446037-1446142:1:exon
so has part: feature:1446532-1446669:1:exon
so has part: feature:1447859-1447891:1:exon
so has part: feature:1448630-1448750:1:exon
so has part: feature:1450130-1450232:1:exon
so has part: feature:1450660-1450869:1:exon
so has part: feature:1451253-1451385:1:exon
so has part: feature:1451754-1451789:1:exon
so has part: feature:1452974-1453128:1:exon
so has part: feature:1454313-1454459:1:exon
so has part: feature:1454811-1454896:1:exon
so has part: feature:1455611-1455736:1:exon
so has part: feature:1456556-1456670:1:exon
so has part: feature:1466915-1467015:1:exon
so has part: feature:1467177-1467254:1:exon
so has part: feature:1468719-1468794:1:exon
so has part: feature:1469159-1469326:1:exon
so has part: feature:1470530-1470617:1:exon
so has part: feature:1473388-1473471:1:exon
so has part: feature:1473675-1473748:1:exon
so has part: feature:1474562-1474768:1:exon
so has part: feature:1476545-1477006:1:exon
so has part: feature:1478136-1478458:1:exon
so has part: feature:1479648-1479717:1:exon
so has part: feature:1482068-1482078:1:exon

XP_016850202.1
type: Protein
SIO_000068: ncbiprotein

position:1404718:1
position: 1404718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1482078:1
position: 1482078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1404718-1404749:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1426487-1426510:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1427415-1427503:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1429756-1429812:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1434643-1434741:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1436005-1436054:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1436654-1436711:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1437553-1437731:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1438186-1438263:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1438916-1439035:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1439727-1439861:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1442705-1442776:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1443997-1444089:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1444260-1444370:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1445113-1445211:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1445744-1445786:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1446037-1446142:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1446532-1446669:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1447859-1447891:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1448630-1448750:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1450130-1450232:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1450660-1450869:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1451253-1451385:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1451754-1451789:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1452974-1453128:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1454313-1454459:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1454811-1454896:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1455611-1455736:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1456556-1456670:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1466915-1467015:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1467177-1467254:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1468719-1468794:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1469159-1469326:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:1470530-1470617:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:1473388-1473471:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:1473675-1473748:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:1474562-1474768:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:1476545-1477006:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:1478136-1478458:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:1479648-1479717:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:1482068-1482078:1:exon

arhgef12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: arhgef12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rho guanine nucleotide exchange factor 12 isoform X3
translation: MSGSQSAITDRFPLRRPTRHGSILSRESPADKKQKVERCISAHDFDPTDSSSRKTKCSSDESRSETYGLVQRCVIIQRDENGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIKSGSYVALTVQGRPPGSPQIPLADSELDPAAFGHMSPIMTSPHSPGASGNTERITSPVLMGEENNIVHSQKVEILRKMLQKEQERLQSLQEDYSRSPASQLLKEIQEAKKHIPQLQEQLSKATGSIQDGVLSSKSVMESLQISEIEAERGDGLNRGDGSFGDSSHMNSDTAESPRSGLRERMSLEESPEKSETQDTDSQSSIGSPSSRMAPPIIGAEDDDFDGEQEQINGQCSCFQNIELLKSRPAHLAVFLHHVVSQFDPASLLCYLFADLYKQTNSKETRRVFAEFNQFFLDKSANLKVPIPDEISVDLEKRRLDLIPEELHRHYIHTMQEKVLPEVHRHLEDFRQKRSMGLTLAEGELTRLDAERIRDRTTQEKERVCAEQIISKIEEVLMTSQPIEEEKSSSIQYVVLTYMKHLGVRVKEPRSLDQKRGRIGFLPKIKVKQSIKKEKEGDEKKRRVFPNILGPPRRPSRHDSYAIGRAMEIQKQRHPKHLSSSSSISPEPPESARMRQSSSIESTDAAHPPANLVSPLAAGSSPSQEGSKDSEAGSKQVGETPPSGDSVDGTPRTTNTIFDFPSPPLDHLLEEEGDFDRLAESGTPKSFRKMDSVGAGDIQSEDELFEFDMETDPPNWQQLVSREVLLGLKPSEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGILPHSELRKIFSNLEDILQLHAGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGAGEDKLKQATATFCSNQPFALEVIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTEMQRLTKYPLLLDNIAKYSEQPGEKEKVKKAADHCRQILNFVNQAVKEAENKQHLEDYQRRLDLSYLKQLEGPMLEEFRNLDLTRKKMIHEGPLTWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILANAADSKHTFSPVIKLNTVLVRQVATDNKAFFVISMSENGAHIYELVAQTVSEKTVWQELIARMAGTVKVGRRVIPLHPPGPCEEDHEEEDQKLKEEQTTPESSMQSPDKDLELESPSATASEKAEAEELLEADRRFREKAPGDLLIKESSDSFTHTGPELLFQISEDRWALDALRNLGLLKKLLMQQLGMTEQESPEDRQRFSRHRAVSQGVQVEKSVLRGQQHSEKDRASLPGVSRMPSGMGTSSFEPCSGHRTSGEFVQVGDTTPNSSQLTDPLSTNPETPIAELEGVTAEDGGEHFFDAREAHSDENHSEGEVTERKDVEEVQLRISAQESSTDEEVASLVLRCTAGKSAMDSAPQAPASPQEAQQPDPGASSPFAAREVEPSHWEATKEPSSSEVLRPPFSPESRSLIMHYIQKIEANLEHLKEVEENYATLQQRLAGSVPTDEHSDKS
SIO_010081: arhgef12
subclass of: SO_0000673
so part of: arhgef12
location: join(1404718..1404749,1426487..1426510,1427415..1427503,1429756..1429812,1434643..1434741,1436005..1436054,1436654..1436711,1437553..1437731,1438186..1438263,1438916..1439035,1439727..1439861,1442705..1442776,1443997..1444089,1444260..1444370,1445113..1445211,1445744..1445786,1446037..1446142,1446532..1446669,1447859..1447891,1448630..1448750,1450130..1450232,1450660..1450869,1451253..1451385,1451754..1451789,1452974..1453128,1454313..1454459,1454811..1454896,1455611..1455736,1456556..1456670,1466915..1467015,1467177..1467254,1468719..1468794,1469159..1469326,1470530..1470617,1473388..1473471,1473675..1473748,1474562..1474768,1476545..1477006,1478169..1478458,1479648..1479717,1482068..1482078)
location: region:1404718-1482078:1
so has part: feature:1404718-1404749:1:exon
so has part: feature:1426487-1426510:1:exon
so has part: feature:1427415-1427503:1:exon
so has part: feature:1429756-1429812:1:exon
so has part: feature:1434643-1434741:1:exon
so has part: feature:1436005-1436054:1:exon
so has part: feature:1436654-1436711:1:exon
so has part: feature:1437553-1437731:1:exon
so has part: feature:1438186-1438263:1:exon
so has part: feature:1438916-1439035:1:exon
so has part: feature:1439727-1439861:1:exon
so has part: feature:1442705-1442776:1:exon
so has part: feature:1443997-1444089:1:exon
so has part: feature:1444260-1444370:1:exon
so has part: feature:1445113-1445211:1:exon
so has part: feature:1445744-1445786:1:exon
so has part: feature:1446037-1446142:1:exon
so has part: feature:1446532-1446669:1:exon
so has part: feature:1447859-1447891:1:exon
so has part: feature:1448630-1448750:1:exon
so has part: feature:1450130-1450232:1:exon
so has part: feature:1450660-1450869:1:exon
so has part: feature:1451253-1451385:1:exon
so has part: feature:1451754-1451789:1:exon
so has part: feature:1452974-1453128:1:exon
so has part: feature:1454313-1454459:1:exon
so has part: feature:1454811-1454896:1:exon
so has part: feature:1455611-1455736:1:exon
so has part: feature:1456556-1456670:1:exon
so has part: feature:1466915-1467015:1:exon
so has part: feature:1467177-1467254:1:exon
so has part: feature:1468719-1468794:1:exon
so has part: feature:1469159-1469326:1:exon
so has part: feature:1470530-1470617:1:exon
so has part: feature:1473388-1473471:1:exon
so has part: feature:1473675-1473748:1:exon
so has part: feature:1474562-1474768:1:exon
so has part: feature:1476545-1477006:1:exon
so has part: feature:1478169-1478458:1:exon
so has part: feature:1479648-1479717:1:exon
so has part: feature:1482068-1482078:1:exon

XP_016850204.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1404718-1404749:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1426487-1426510:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1427415-1427503:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1429756-1429812:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1434643-1434741:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1436005-1436054:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1436654-1436711:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1437553-1437731:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1438186-1438263:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1438916-1439035:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1439727-1439861:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1442705-1442776:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1443997-1444089:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1444260-1444370:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1445113-1445211:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1445744-1445786:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1446037-1446142:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1446532-1446669:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1447859-1447891:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1448630-1448750:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1450130-1450232:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1450660-1450869:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1451253-1451385:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1451754-1451789:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1452974-1453128:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1454313-1454459:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1454811-1454896:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1455611-1455736:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1456556-1456670:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1466915-1467015:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1467177-1467254:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1468719-1468794:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1469159-1469326:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:1470530-1470617:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:1473388-1473471:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:1473675-1473748:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:1474562-1474768:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:1476545-1477006:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:1478169-1478458:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:1479648-1479717:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:1482068-1482078:1:exon

arhgef12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: arhgef12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rho guanine nucleotide exchange factor 12 isoform X2
translation: MSGSQSAITDRFPLRRPTRHGSILSRESPADKKQKVERCISAHDFDPTDSSSRKTKCSSDESRSETYGLVQRCVIIQRDENGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIKSGSYVALTVQGRPPGSPQIPLADSELDPAAFGHMSPIMTSPHSPGASGNTERITSPVLMGEENNIVHSQKVEILRKMLQKEQERLQSLQEDYSRSPASQLLKEIQEAKKHIPQLQEQLSKATGSIQDGVLSSKSVMESLQISEIEAERGDGLNRGDGSFGDSSHMNSDTAESPRSGLRERMSLEESPEKSETQDTDSQSSIGSPSSRMAPPIIGAEDDDFDGEQEQINGQCSCFQNIELLKSRPAHLAVFLHHVVSQFDPASLLCYLFADLYKQTNSKETRRVFAEFNQFFLDKSANLKVPIPDEISVDLEKRRLDLIPEELHRHYIHTMQEKVLPEVHRHLEDFRQKRSMGLTLAEGELTRLDAERIRDRTTQEKERVCAEQIISKIEEVLMTSQPIEEEKSSSIQYVVLTYMKHLGVRVKEPRSLDQKRGRIGFLPKIKQSIKKEKEGDEKKRRVFPNILGPPRRPSRHDSYAIGRAMEIQKQRHPKHLSSSSSISPEPPESARMRQSSSIESTDAAHPPANLVSPLAAGSSPSQEGSKDSEAGSKQVGETPPSGDSVDGTPRTTNTIFDFPSPPLDHLLEEEGDFDRLAESGTPKSFRKMDSVGAGDIQSEDELFEFDMETDPPNWQQLVSREVLLGLKPSEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGILPHSELRKIFSNLEDILQLHAGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGAGEDKLKQATATFCSNQPFALEVIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTEMQRLTKYPLLLDNIAKYSEQPGEKEKVKKAADHCRQILNFVNQAVKEAENKQHLEDYQRRLDLSYLKQLEGPMLEEFRNLDLTRKKMIHEGPLTWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILANAADSKHTFSPVIKLNTVLVRQVATDNKAFFVISMSENGAHIYELVAQTVSEKTVWQELIARMAGTVKVGRRVIPLHPPGPCEEDHEEEDQKLKEEQTTPESSMQSPDKDLELESPSATASEKAEAEELLEADRRFREKAPGDLLIKESSDSFTHTGPELLFQISEDRWALDALRNLGLLKKLLMQQLGMTEQESPEDRQRFSRHRAVSQGVQVEKSVLRGQQHSEKDRASLPGVSRMPSGMGTSSFEPCSGHRTSGEFVQVGDTTPNSSQLTDPLSTNPETPIAELEGVTAEDGGEHFFDAREAHSDENHSEGEVTERKDVEEVQLRISGNFLILDDYGAAQESSTDEEVASLVLRCTAGKSAMDSAPQAPASPQEAQQPDPGASSPFAAREVEPSHWEATKEPSSSEVLRPPFSPESRSLIMHYIQKIEANLEHLKEVEENYATLQQRLAGSVPTDEHSDKS
SIO_010081: arhgef12
subclass of: SO_0000673
so part of: arhgef12
location: join(1404718..1404749,1426487..1426510,1427415..1427503,1429756..1429812,1434643..1434741,1436005..1436054,1436654..1436711,1437553..1437731,1438186..1438263,1438916..1439035,1439727..1439861,1442705..1442776,1443997..1444089,1444260..1444370,1445113..1445211,1445744..1445786,1446037..1446142,1446532..1446669,1447859..1447891,1448630..1448744,1450130..1450232,1450660..1450869,1451253..1451385,1451754..1451789,1452974..1453128,1454313..1454459,1454811..1454896,1455611..1455736,1456556..1456670,1466915..1467015,1467177..1467254,1468719..1468794,1469159..1469326,1470530..1470617,1473388..1473471,1473675..1473748,1474562..1474768,1476545..1477006,1478136..1478458,1479648..1479717,1482068..1482078)
location: region:1404718-1482078:1
so has part: feature:1404718-1404749:1:exon
so has part: feature:1426487-1426510:1:exon
so has part: feature:1427415-1427503:1:exon
so has part: feature:1429756-1429812:1:exon
so has part: feature:1434643-1434741:1:exon
so has part: feature:1436005-1436054:1:exon
so has part: feature:1436654-1436711:1:exon
so has part: feature:1437553-1437731:1:exon
so has part: feature:1438186-1438263:1:exon
so has part: feature:1438916-1439035:1:exon
so has part: feature:1439727-1439861:1:exon
so has part: feature:1442705-1442776:1:exon
so has part: feature:1443997-1444089:1:exon
so has part: feature:1444260-1444370:1:exon
so has part: feature:1445113-1445211:1:exon
so has part: feature:1445744-1445786:1:exon
so has part: feature:1446037-1446142:1:exon
so has part: feature:1446532-1446669:1:exon
so has part: feature:1447859-1447891:1:exon
so has part: feature:1448630-1448744:1:exon
so has part: feature:1450130-1450232:1:exon
so has part: feature:1450660-1450869:1:exon
so has part: feature:1451253-1451385:1:exon
so has part: feature:1451754-1451789:1:exon
so has part: feature:1452974-1453128:1:exon
so has part: feature:1454313-1454459:1:exon
so has part: feature:1454811-1454896:1:exon
so has part: feature:1455611-1455736:1:exon
so has part: feature:1456556-1456670:1:exon
so has part: feature:1466915-1467015:1:exon
so has part: feature:1467177-1467254:1:exon
so has part: feature:1468719-1468794:1:exon
so has part: feature:1469159-1469326:1:exon
so has part: feature:1470530-1470617:1:exon
so has part: feature:1473388-1473471:1:exon
so has part: feature:1473675-1473748:1:exon
so has part: feature:1474562-1474768:1:exon
so has part: feature:1476545-1477006:1:exon
so has part: feature:1478136-1478458:1:exon
so has part: feature:1479648-1479717:1:exon
so has part: feature:1482068-1482078:1:exon

XP_016850203.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1404718-1404749:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1426487-1426510:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1427415-1427503:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1429756-1429812:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1434643-1434741:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1436005-1436054:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1436654-1436711:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1437553-1437731:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1438186-1438263:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1438916-1439035:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1439727-1439861:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1442705-1442776:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1443997-1444089:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1444260-1444370:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1445113-1445211:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1445744-1445786:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1446037-1446142:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1446532-1446669:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1447859-1447891:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1448630-1448744:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1450130-1450232:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1450660-1450869:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1451253-1451385:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1451754-1451789:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1452974-1453128:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1454313-1454459:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1454811-1454896:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1455611-1455736:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1456556-1456670:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1466915-1467015:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1467177-1467254:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1468719-1468794:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1469159-1469326:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:1470530-1470617:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:1473388-1473471:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:1473675-1473748:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:1474562-1474768:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:1476545-1477006:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:1478136-1478458:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:1479648-1479717:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:1482068-1482078:1:exon

arhgef12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: arhgef12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rho guanine nucleotide exchange factor 12 isoform X4
translation: MSGSQSAITDRFPLRRPTRHGSILSRESPADKKQKVERCISAHDFDPTGLVQRCVIIQRDENGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIKSGSYVALTVQGRPPGSPQIPLADSELDPAAFGHMSPIMTSPHSPGASGNTERITSPVLMGEENNIVHSQKVEILRKMLQKEQERLQSLQEDYSRSPASQLLKEIQEAKKHIPQLQEQLSKATGSIQDGVLSSKSVMESLQISEIEAERGDGLNRGDGSFGDSSHMNSDTAESPRSGLRERMSLEESPEKSETQDTDSQSSIGSPSSRMAPPIIGAEDDDFDGEQEQINGQCSCFQNIELLKSRPAHLAVFLHHVVSQFDPASLLCYLFADLYKQTNSKETRRVFAEFNQFFLDKSANLKVPIPDEISVDLEKRRLDLIPEELHRHYIHTMQEKVLPEVHRHLEDFRQKRSMGLTLAEGELTRLDAERIRDRTTQEKERVCAEQIISKIEEVLMTSQPIEEEKSSSIQYVVLTYMKHLGVRVKEPRSLDQKRGRIGFLPKIKVKQSIKKEKEGDEKKRRVFPNILGPPRRPSRHDSYAIGRAMEIQKQRHPKHLSSSSSISPEPPESARMRQSSSIESTDAAHPPANLVSPLAAGSSPSQEGSKDSEAGSKQVGETPPSGDSVDGTPRTTNTIFDFPSPPLDHLLEEEGDFDRLAESGTPKSFRKMDSVGAGDIQSEDELFEFDMETDPPNWQQLVSREVLLGLKPSEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGILPHSELRKIFSNLEDILQLHAGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGAGEDKLKQATATFCSNQPFALEVIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTEMQRLTKYPLLLDNIAKYSEQPGEKEKVKKAADHCRQILNFVNQAVKEAENKQHLEDYQRRLDLSYLKQLEGPMLEEFRNLDLTRKKMIHEGPLTWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILANAADSKHTFSPVIKLNTVLVRQVATDNKAFFVISMSENGAHIYELVAQTVSEKTVWQELIARMAGTVKVGRRVIPLHPPGPCEEDHEEEDQKLKEEQTTPESSMQSPDKDLELESPSATASEKAEAEELLEADRRFREKAPGDLLIKESSDSFTHTGPELLFQISEDRWALDALRNLGLLKKLLMQQLGMTEQESPEDRQRFSRHRAVSQGVQVEKSVLRGQQHSEKDRASLPGVSRMPSGMGTSSFEPCSGHRTSGEFVQVGDTTPNSSQLTDPLSTNPETPIAELEGVTAEDGGEHFFDAREAHSDENHSEGEVTERKDVEEVQLRISGNFLILDDYGAAQESSTDEEVASLVLRCTAGKSAMDSAPQAPASPQEAQQPDPGASSPFAAREVEPSHWEATKEPSSSEVLRPPFSPESRSLIMHYIQKIEANLEHLKEVEENYATLQQRLAGSVPTDEHSDKS
SIO_010081: arhgef12
subclass of: SO_0000673
so part of: arhgef12
location: join(1404718..1404749,1426487..1426510,1427415..1427503,1434643..1434741,1436005..1436054,1436654..1436711,1437553..1437731,1438186..1438263,1438916..1439035,1439727..1439861,1442705..1442776,1443997..1444089,1444260..1444370,1445113..1445211,1445744..1445786,1446037..1446142,1446532..1446669,1447859..1447891,1448630..1448750,1450130..1450232,1450660..1450869,1451253..1451385,1451754..1451789,1452974..1453128,1454313..1454459,1454811..1454896,1455611..1455736,1456556..1456670,1466915..1467015,1467177..1467254,1468719..1468794,1469159..1469326,1470530..1470617,1473388..1473471,1473675..1473748,1474562..1474768,1476545..1477006,1478136..1478458,1479648..1479717,1482068..1482078)
location: region:1404718-1482078:1
so has part: feature:1404718-1404749:1:exon
so has part: feature:1426487-1426510:1:exon
so has part: feature:1427415-1427503:1:exon
so has part: feature:1434643-1434741:1:exon
so has part: feature:1436005-1436054:1:exon
so has part: feature:1436654-1436711:1:exon
so has part: feature:1437553-1437731:1:exon
so has part: feature:1438186-1438263:1:exon
so has part: feature:1438916-1439035:1:exon
so has part: feature:1439727-1439861:1:exon
so has part: feature:1442705-1442776:1:exon
so has part: feature:1443997-1444089:1:exon
so has part: feature:1444260-1444370:1:exon
so has part: feature:1445113-1445211:1:exon
so has part: feature:1445744-1445786:1:exon
so has part: feature:1446037-1446142:1:exon
so has part: feature:1446532-1446669:1:exon
so has part: feature:1447859-1447891:1:exon
so has part: feature:1448630-1448750:1:exon
so has part: feature:1450130-1450232:1:exon
so has part: feature:1450660-1450869:1:exon
so has part: feature:1451253-1451385:1:exon
so has part: feature:1451754-1451789:1:exon
so has part: feature:1452974-1453128:1:exon
so has part: feature:1454313-1454459:1:exon
so has part: feature:1454811-1454896:1:exon
so has part: feature:1455611-1455736:1:exon
so has part: feature:1456556-1456670:1:exon
so has part: feature:1466915-1467015:1:exon
so has part: feature:1467177-1467254:1:exon
so has part: feature:1468719-1468794:1:exon
so has part: feature:1469159-1469326:1:exon
so has part: feature:1470530-1470617:1:exon
so has part: feature:1473388-1473471:1:exon
so has part: feature:1473675-1473748:1:exon
so has part: feature:1474562-1474768:1:exon
so has part: feature:1476545-1477006:1:exon
so has part: feature:1478136-1478458:1:exon
so has part: feature:1479648-1479717:1:exon
so has part: feature:1482068-1482078:1:exon

XP_016850205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1404718-1404749:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1426487-1426510:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1427415-1427503:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1434643-1434741:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1436005-1436054:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1436654-1436711:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1437553-1437731:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1438186-1438263:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1438916-1439035:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1439727-1439861:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1442705-1442776:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1443997-1444089:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1444260-1444370:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1445113-1445211:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1445744-1445786:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1446037-1446142:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1446532-1446669:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1447859-1447891:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1448630-1448750:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1450130-1450232:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1450660-1450869:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1451253-1451385:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1451754-1451789:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1452974-1453128:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1454313-1454459:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1454811-1454896:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1455611-1455736:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1456556-1456670:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1466915-1467015:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1467177-1467254:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1468719-1468794:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1469159-1469326:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1470530-1470617:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:1473388-1473471:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:1473675-1473748:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:1474562-1474768:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:1476545-1477006:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:1478136-1478458:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:1479648-1479717:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:1482068-1482078:1:exon

arhgef12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: arhgef12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rho guanine nucleotide exchange factor 12 isoform X5
translation: MSGSQSAITDRFPLRRPTRHGSILSRESPADKKQKVERCISAHDFDPTDSSSRKTKCSSDESRSETYGLVQRCVIIQRDENGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIKSGSYVALTVQGRPPGSPQIPLADSELDPAAFGHMSPIMTSPHSPGASGNTERITSPVLMGEENNIVHSQKVEILRKMLQKEQERLQSLQEDYSRSPASQLLKEIQEAKKHIPQLQEQLSKATGSIQDGVLSSKSVMESLQISEIEAERGDGLNRGDGSFGDSSHMNSDTAESPRSGLRERMSLEESPEKSETQDTDSQSSIGSPSSRMAPPIIGAEDDDFDGEQEQINGQCSCFQNIELLKSRPAHLAVFLHHVVSQFDPASLLCYLFADLYKQTNSKETRRVFAEFNQFFLDKSANLKVPIPDEISVDLEKRRLDLIPEELHRHYIHTMQEKVLPEVHRHLEDFRQKRSMGLTLAEGELTRLDAERIRDRTTQEKERVCAEQIISKIEEVLMTSQPIEEEKSSSIQYVVLTYMKHLGVRVKEPRSLDQKRGRIGFLPKIKVKQSIKKEKEGDEKKRRVFPNILGPPRRPSRHDSYAIGRAMEIQKQRHPKHLSSSSSISPEPPESARMRQSSSIESTDAAHPPANLVSPLAAGSSPSQEGSKDSEAGSKQVGETPPSGDSVDGTPRTTNTIFDFPSPPLDHLLEEEGDFDRLAESGTPKSFRKMDSVGAGDIQSEDELFEFDMETDPPNWQQLVSREVLLGLKPSEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGILPHSELRKIFSNLEDILQLHAGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGAGEDKLKQATATFCSNQPFALEVIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTEMQRLTKYPLLLDNIAKYSEQPGEKEKVKKAADHCRQILNFVNQAVKEAENKQHLEDYQRRLDLSYLKQLEGPMLEEFRNLDLTRKKMIHEGPLTWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILANAADSKHTFSPVIKLNTVLVRQVATDNKAFFVISMSENGAHIYELVAQTVSEKTVWQELIARMAGTVKVGRRVIPLHPPGPCEEDHEEEDQKLKEEQTTPESSMQSPDKDLELESPSATASEKAEAEELLEADRRFREKAPGDLLIKESSDSFTHTGPELLFQISEDRWALDALRNCTLLGCVVHKKNLELWDAGVLHSFPFLSWTR
SIO_010081: arhgef12
subclass of: SO_0000673
so part of: arhgef12
location: join(1404718..1404749,1426487..1426510,1427415..1427503,1429756..1429812,1434643..1434741,1436005..1436054,1436654..1436711,1437553..1437731,1438186..1438263,1438916..1439035,1439727..1439861,1442705..1442776,1443997..1444089,1444260..1444370,1445113..1445211,1445744..1445786,1446037..1446142,1446532..1446669,1447859..1447891,1448630..1448750,1450130..1450232,1450660..1450869,1451253..1451385,1451754..1451789,1452974..1453128,1454313..1454459,1454811..1454896,1455611..1455736,1456556..1456670,1457927..1458027,1458187..1458264,1459729..1459804,1460171..1460338,1460705..1460792,1463550..1463633,1463837..1463910,1465886..1466187)
location: region:1404718-1466187:1
so has part: feature:1404718-1404749:1:exon
so has part: feature:1426487-1426510:1:exon
so has part: feature:1427415-1427503:1:exon
so has part: feature:1429756-1429812:1:exon
so has part: feature:1434643-1434741:1:exon
so has part: feature:1436005-1436054:1:exon
so has part: feature:1436654-1436711:1:exon
so has part: feature:1437553-1437731:1:exon
so has part: feature:1438186-1438263:1:exon
so has part: feature:1438916-1439035:1:exon
so has part: feature:1439727-1439861:1:exon
so has part: feature:1442705-1442776:1:exon
so has part: feature:1443997-1444089:1:exon
so has part: feature:1444260-1444370:1:exon
so has part: feature:1445113-1445211:1:exon
so has part: feature:1445744-1445786:1:exon
so has part: feature:1446037-1446142:1:exon
so has part: feature:1446532-1446669:1:exon
so has part: feature:1447859-1447891:1:exon
so has part: feature:1448630-1448750:1:exon
so has part: feature:1450130-1450232:1:exon
so has part: feature:1450660-1450869:1:exon
so has part: feature:1451253-1451385:1:exon
so has part: feature:1451754-1451789:1:exon
so has part: feature:1452974-1453128:1:exon
so has part: feature:1454313-1454459:1:exon
so has part: feature:1454811-1454896:1:exon
so has part: feature:1455611-1455736:1:exon
so has part: feature:1456556-1456670:1:exon
so has part: feature:1457927-1458027:1:exon
so has part: feature:1458187-1458264:1:exon
so has part: feature:1459729-1459804:1:exon
so has part: feature:1460171-1460338:1:exon
so has part: feature:1460705-1460792:1:exon
so has part: feature:1463550-1463633:1:exon
so has part: feature:1463837-1463910:1:exon
so has part: feature:1465886-1466187:1:exon

XP_016850206.1
type: Protein
SIO_000068: ncbiprotein

position:1466187:1
position: 1466187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1404718-1404749:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1426487-1426510:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1427415-1427503:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1429756-1429812:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1434643-1434741:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1436005-1436054:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1436654-1436711:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1437553-1437731:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1438186-1438263:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1438916-1439035:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1439727-1439861:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1442705-1442776:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1443997-1444089:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1444260-1444370:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1445113-1445211:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1445744-1445786:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1446037-1446142:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1446532-1446669:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1447859-1447891:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1448630-1448750:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1450130-1450232:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1450660-1450869:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1451253-1451385:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1451754-1451789:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1452974-1453128:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1454313-1454459:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1454811-1454896:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1455611-1455736:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1456556-1456670:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1457927-1458027:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1458187-1458264:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1459729-1459804:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1460171-1460338:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:1460705-1460792:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:1463550-1463633:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:1463837-1463910:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:1465886-1466187:1:exon

arhgef12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: arhgef12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rho guanine nucleotide exchange factor 12 isoform X6
translation: MSGSQSAITDRFPLRRPTRHGSILSRESPADKKQKVERCISAHDFDPTGLVQRCVIIQRDENGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIKSGSYVALTVQGRPPGSPQIPLADSELDPAAFGHMSPIMTSPHSPGASGNTERITSPVLMGEENNIVHSQKVEILRKMLQKEQERLQSLQEDYSRSPASQLLKEIQEAKKHIPQLQEQLSKATGSIQDGVLSSKSVMESLQISEIEAERGDGLNRGDGSFGDSSHMNSDTAESPRSGLRERMSLEESPEKSETQDTDSQSSIGSPSSRMAPPIIGAEDDDFDGEQEQINGQCSCFQNIELLKSRPAHLAVFLHHVVSQFDPASLLCYLFADLYKQTNSKETRRVFAEFNQFFLDKSANLKVPIPDEISVDLEKRRLDLIPEELHRHYIHTMQEKVLPEVHRHLEDFRQKRSMGLTLAEGELTRLDAERIRDRTTQEKERVCAEQIISKIEEVLMTSQPIEEEKSSSIQYVVLTYMKHLGVRVKEPRSLDQKRGRIGFLPKIKQSIKKEKEGDEKKRRVFPNILGPPRRPSRHDSYAIGRAMEIQKQRHPKHLSSSSSISPEPPESARMRQSSSIESTDAAHPPANLVSPLAAGSSPSQEGSKDSEAGSKQVGETPPSGDSVDGTPRTTNTIFDFPSPPLDHLLEEEGDFDRLAESGTPKSFRKMDSVGAGDIQSEDELFEFDMETDPPNWQQLVSREVLLGLKPSEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGILPHSELRKIFSNLEDILQLHAGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGAGEDKLKQATATFCSNQPFALEVIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTEMQRLTKYPLLLDNIAKYSEQPGEKEKVKKAADHCRQILNFVNQAVKEAENKQHLEDYQRRLDLSYLKQLEGPMLEEFRNLDLTRKKMIHEGPLTWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILANAADSKHTFSPVIKLNTVLVRQVATDNKAFFVISMSENGAHIYELVAQTVSEKTVWQELIARMAGTVKVGRRVIPLHPPGPCEEDHEEEDQKLKEEQTTPESSMQSPDKDLELESPSATASEKAEAEELLEADRRFREKAPGDLLIKESSDSFTHTGPELLFQISEDRWALDALRNCTLLGCVVHKKNLELWDAGVLHSFPFLSWTR
SIO_010081: arhgef12
subclass of: SO_0000673
so part of: arhgef12
location: join(1404718..1404749,1426487..1426510,1427415..1427503,1434643..1434741,1436005..1436054,1436654..1436711,1437553..1437731,1438186..1438263,1438916..1439035,1439727..1439861,1442705..1442776,1443997..1444089,1444260..1444370,1445113..1445211,1445744..1445786,1446037..1446142,1446532..1446669,1447859..1447891,1448630..1448744,1450130..1450232,1450660..1450869,1451253..1451385,1451754..1451789,1452974..1453128,1454313..1454459,1454811..1454896,1455611..1455736,1456556..1456670,1457927..1458027,1458187..1458264,1459729..1459804,1460171..1460338,1460705..1460792,1463550..1463633,1463837..1463910,1465886..1466187)
location: region:1404718-1466187:1
so has part: feature:1404718-1404749:1:exon
so has part: feature:1426487-1426510:1:exon
so has part: feature:1427415-1427503:1:exon
so has part: feature:1434643-1434741:1:exon
so has part: feature:1436005-1436054:1:exon
so has part: feature:1436654-1436711:1:exon
so has part: feature:1437553-1437731:1:exon
so has part: feature:1438186-1438263:1:exon
so has part: feature:1438916-1439035:1:exon
so has part: feature:1439727-1439861:1:exon
so has part: feature:1442705-1442776:1:exon
so has part: feature:1443997-1444089:1:exon
so has part: feature:1444260-1444370:1:exon
so has part: feature:1445113-1445211:1:exon
so has part: feature:1445744-1445786:1:exon
so has part: feature:1446037-1446142:1:exon
so has part: feature:1446532-1446669:1:exon
so has part: feature:1447859-1447891:1:exon
so has part: feature:1448630-1448744:1:exon
so has part: feature:1450130-1450232:1:exon
so has part: feature:1450660-1450869:1:exon
so has part: feature:1451253-1451385:1:exon
so has part: feature:1451754-1451789:1:exon
so has part: feature:1452974-1453128:1:exon
so has part: feature:1454313-1454459:1:exon
so has part: feature:1454811-1454896:1:exon
so has part: feature:1455611-1455736:1:exon
so has part: feature:1456556-1456670:1:exon
so has part: feature:1457927-1458027:1:exon
so has part: feature:1458187-1458264:1:exon
so has part: feature:1459729-1459804:1:exon
so has part: feature:1460171-1460338:1:exon
so has part: feature:1460705-1460792:1:exon
so has part: feature:1463550-1463633:1:exon
so has part: feature:1463837-1463910:1:exon
so has part: feature:1465886-1466187:1:exon

XP_016850207.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1404718-1404749:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1426487-1426510:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1427415-1427503:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1434643-1434741:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1436005-1436054:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1436654-1436711:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1437553-1437731:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1438186-1438263:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1438916-1439035:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1439727-1439861:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1442705-1442776:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1443997-1444089:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1444260-1444370:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1445113-1445211:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1445744-1445786:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1446037-1446142:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1446532-1446669:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1447859-1447891:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1448630-1448744:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1450130-1450232:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1450660-1450869:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1451253-1451385:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1451754-1451789:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1452974-1453128:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1454313-1454459:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1454811-1454896:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1455611-1455736:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1456556-1456670:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1457927-1458027:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1458187-1458264:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1459729-1459804:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1460171-1460338:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1460705-1460792:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:1463550-1463633:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:1463837-1463910:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:1465886-1466187:1:exon

grik4
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: grik4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1511236..2101498
location: region:1511236-2101498:1
so has part: feature:1511236-2101498:1:exon
subclass of: SO_0000010

100566372
type: Gene
SIO_000068: ncbigene

position:1511236:1
position: 1511236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2101498:1
position: 2101498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1511236-2101498:1:exon

grik4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: grik4
product: glutamate ionotropic receptor kainate type subunit 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 102 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003222804.3
SIO_010081: grik4
subclass of: SO_0000673
so part of: grik4
location: join(1511236..1511388,1646852..1646986,1706476..1706607,1867036..1867200,1885165..1885262,1897675..1897840,1918765..1918943,1934665..1934718,1968259..1968420,1996939..1997091,2001060..2001164,2026463..2026570,2029430..2029633,2065288..2065401,2079534..2079643,2086764..2086937,2087785..2087950,2089872..2090097,2093683..2093811,2097349..2097467,2100978..2101498)
location: region:1511236-2101498:1
so has part: feature:1511236-1511388:1:exon
so has part: feature:1646852-1646986:1:exon
so has part: feature:1706476-1706607:1:exon
so has part: feature:1867036-1867200:1:exon
so has part: feature:1885165-1885262:1:exon
so has part: feature:1897675-1897840:1:exon
so has part: feature:1918765-1918943:1:exon
so has part: feature:1934665-1934718:1:exon
so has part: feature:1968259-1968420:1:exon
so has part: feature:1996939-1997091:1:exon
so has part: feature:2001060-2001164:1:exon
so has part: feature:2026463-2026570:1:exon
so has part: feature:2029430-2029633:1:exon
so has part: feature:2065288-2065401:1:exon
so has part: feature:2079534-2079643:1:exon
so has part: feature:2086764-2086937:1:exon
so has part: feature:2087785-2087950:1:exon
so has part: feature:2089872-2090097:1:exon
so has part: feature:2093683-2093811:1:exon
so has part: feature:2097349-2097467:1:exon
so has part: feature:2100978-2101498:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1511236-1511388:1:exon

position:1511388:1
position: 1511388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1646852-1646986:1:exon

position:1646852:1
position: 1646852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1646986:1
position: 1646986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1706476-1706607:1:exon

position:1706476:1
position: 1706476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1706607:1
position: 1706607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1867036-1867200:1:exon

position:1867036:1
position: 1867036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1867200:1
position: 1867200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1885165-1885262:1:exon

position:1885165:1
position: 1885165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1885262:1
position: 1885262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1897675-1897840:1:exon

position:1897675:1
position: 1897675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1897840:1
position: 1897840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1918765-1918943:1:exon

position:1918765:1
position: 1918765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1918943:1
position: 1918943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1934665-1934718:1:exon

position:1934665:1
position: 1934665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1934718:1
position: 1934718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1968259-1968420:1:exon

position:1968259:1
position: 1968259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1968420:1
position: 1968420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1996939-1997091:1:exon

position:1996939:1
position: 1996939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1997091:1
position: 1997091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2001060-2001164:1:exon

position:2001060:1
position: 2001060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2001164:1
position: 2001164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2026463-2026570:1:exon

position:2026463:1
position: 2026463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2026570:1
position: 2026570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2029430-2029633:1:exon

position:2029430:1
position: 2029430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2029633:1
position: 2029633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2065288-2065401:1:exon

position:2065288:1
position: 2065288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2065401:1
position: 2065401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2079534-2079643:1:exon

position:2079534:1
position: 2079534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2079643:1
position: 2079643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2086764-2086937:1:exon

position:2086764:1
position: 2086764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2086937:1
position: 2086937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2087785-2087950:1:exon

position:2087785:1
position: 2087785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2087950:1
position: 2087950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2089872-2090097:1:exon

position:2089872:1
position: 2089872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2090097:1
position: 2090097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:2093683-2093811:1:exon

position:2093683:1
position: 2093683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2093811:1
position: 2093811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:2097349-2097467:1:exon

position:2097349:1
position: 2097349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2097467:1
position: 2097467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:2100978-2101498:1:exon

position:2100978:1
position: 2100978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

grik4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: grik4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glutamate receptor ionotropic, kainate 4
translation: MPRILAPLVLLLLWLMKITASPHSLRIAAILDDPMECSRGERLSITLAKNRINRAPERMGKARVEVDIFELLRDSEYETAETMCQILPKGVVAVLGPSSSPASSSIISNICGEKEVPHFKVAPEEFLKLQLQRFTTLNLHPSNTDISVAVAGILNFFNCTTACLICAKAECLLNLERLLRQFLISKETLSVRMLDDSRDPTPLLKEIRDDKTATIIVHANASMSHIILNKAAELGMVSAYYTYIFTNLEFSLQRLDSLLDDRVNIMAFSIFNQSHAFFQEFAESLNQSWLENCDHIPFTGPALSSALLFDAVYAVVNAVQELNRSQEIGVKPLSCGSAQIWQHGTSLMNYLRMVELEGLTGHIEFNSKGQRSNYALKILQYTRNGFRQIGHWHVTKGLTMDNQVFSSNVTESLFNTTLIVTTILENPYLMLKGNHPELEGNDRYEGFCVDMLKELAEILHFNYKIRLVGDGVYGVPEANGTWTGMVGELIARKADLAVAGLTITAEREKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDPFSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYSPHPCSQGRCNLLVNQYSLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMDVPIESVDDLADQTAIEYGTIHGGSSMTFFQNSRYQTYQRMWNYMYSKQPSVFVKSTEEGIARVLNSNYAFLLESTMNEYYRQRNCNLTQVGGLLDTKGYGIGMPVGSLFRDEFDLAILQLQENNRLEILKRKWWEGGQCPKEEDHRAKGLGMENIGGIFVVLICGLIVAIFMAMLEFLWNLRHSEHSEVSVCQEMVTELRSIILCKDSFQPRRRRGGIIRTRPIIQEERRARTTTTLSNGKLCGGGDPDQLAQRLAQEAALVARGCTHIRVCPECRRFQGLRLRAGPDSPMQSDESLEWEKVTNSSEPE
SIO_010081: grik4
subclass of: SO_0000673
so part of: grik4
location: join(1706526..1706607,1867036..1867200,1885165..1885262,1897675..1897840,1918765..1918943,1934665..1934718,1968259..1968420,1996939..1997091,2001060..2001164,2026463..2026570,2029430..2029633,2065288..2065401,2079534..2079643,2086764..2086937,2087785..2087950,2089872..2090097,2093683..2093811,2097349..2097467,2100978..2101343)
location: region:1706526-2101343:1
so has part: feature:1706526-1706607:1:exon
so has part: feature:1867036-1867200:1:exon
so has part: feature:1885165-1885262:1:exon
so has part: feature:1897675-1897840:1:exon
so has part: feature:1918765-1918943:1:exon
so has part: feature:1934665-1934718:1:exon
so has part: feature:1968259-1968420:1:exon
so has part: feature:1996939-1997091:1:exon
so has part: feature:2001060-2001164:1:exon
so has part: feature:2026463-2026570:1:exon
so has part: feature:2029430-2029633:1:exon
so has part: feature:2065288-2065401:1:exon
so has part: feature:2079534-2079643:1:exon
so has part: feature:2086764-2086937:1:exon
so has part: feature:2087785-2087950:1:exon
so has part: feature:2089872-2090097:1:exon
so has part: feature:2093683-2093811:1:exon
so has part: feature:2097349-2097467:1:exon
so has part: feature:2100978-2101343:1:exon

XP_003222852.1
type: Protein
SIO_000068: ncbiprotein

position:1706526:1
position: 1706526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2101343:1
position: 2101343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1706526-1706607:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1867036-1867200:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1885165-1885262:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1897675-1897840:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1918765-1918943:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1934665-1934718:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1968259-1968420:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1996939-1997091:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2001060-2001164:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2026463-2026570:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2029430-2029633:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2065288-2065401:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2079534-2079643:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2086764-2086937:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2087785-2087950:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2089872-2090097:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2093683-2093811:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2097349-2097467:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2100978-2101343:1:exon

LOC103279297
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: LOC103279297
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2094973..2103828)
location: region:2094973-2103828:-1
so has part: feature:2094973-2103828:-1:exon
subclass of: SO_0000011

103279297
type: Gene
SIO_000068: ncbigene

position:2094973:-1
position: 2094973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2103828:-1
position: 2103828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2094973-2103828:-1:exon

LOC103279297
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 28377
nc RNA class: lncRNA
gene: LOC103279297
product: uncharacterized LOC103279297
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_506691.2
SIO_010081: LOC103279297
subclass of: SO_0000673
so part of: LOC103279297
location: complement(join(2094973..2096773,2102645..2103828))
location: region:2094973-2103828:-1
so has part: feature:2102645-2103828:-1:exon
so has part: feature:2094973-2096773:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2102645-2103828:-1:exon

position:2102645:-1
position: 2102645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2094973-2096773:-1:exon

position:2096773:-1
position: 2096773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

tbcel
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: tbcel
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2114819..2140164
location: region:2114819-2140164:1
so has part: feature:2114819-2140164:1:exon
subclass of: SO_0000010

100566560
type: Gene
SIO_000068: ncbigene

position:2114819:1
position: 2114819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2140164:1
position: 2140164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2114819-2140164:1:exon

tbcel
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: tbcel
product: tubulin folding cofactor E-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_003222805.3
SIO_010081: tbcel
subclass of: SO_0000673
so part of: tbcel
location: join(2114819..2114965,2122270..2122380,2123951..2124100,2125142..2125281,2126371..2126552,2128591..2128847,2130256..2130382,2130933..2131049,2136988..2140164)
location: region:2114819-2140164:1
so has part: feature:2114819-2114965:1:exon
so has part: feature:2122270-2122380:1:exon
so has part: feature:2123951-2124100:1:exon
so has part: feature:2125142-2125281:1:exon
so has part: feature:2126371-2126552:1:exon
so has part: feature:2128591-2128847:1:exon
so has part: feature:2130256-2130382:1:exon
so has part: feature:2130933-2131049:1:exon
so has part: feature:2136988-2140164:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2114819-2114965:1:exon

position:2114965:1
position: 2114965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2122270-2122380:1:exon

position:2122270:1
position: 2122270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2122380:1
position: 2122380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2123951-2124100:1:exon

position:2123951:1
position: 2123951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2124100:1
position: 2124100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2125142-2125281:1:exon

position:2125142:1
position: 2125142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2125281:1
position: 2125281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2126371-2126552:1:exon

position:2126371:1
position: 2126371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2126552:1
position: 2126552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2128591-2128847:1:exon

position:2128591:1
position: 2128591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2128847:1
position: 2128847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2130256-2130382:1:exon

position:2130256:1
position: 2130256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2130382:1
position: 2130382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2130933-2131049:1:exon

position:2130933:1
position: 2130933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2131049:1
position: 2131049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2136988-2140164:1:exon

position:2136988:1
position: 2136988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tbcel
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: tbcel
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tubulin-specific chaperone cofactor E-like protein
translation: MDQPAGRSFMQVLCEKYSPENFPYRRGPGMGVHVPATPQGSPMKDRLNLPSVLVLNSCGITCAGDENEIAAFCAHVSELDLSDNKLEDWHEVSKIVSNVPHLAFLNLSSNPLNLSVLERGCAGSFSGVRKLVLNNSKASWETVHTILQELPDLEELFLCLNDYKTVSCSPVCCHSLKLLHITDNNLKDWTEIRKLGVMFPSLDTLVLANNYLTTIEDSEDALARLFPNLRSISLHKSGLHSWEDIEKLNSFPRLEEVRLLGIPLLQPYTNEERRKLVIARLPSITKLNGSVIVEGEREDAERFFIRYYIDFPPEEAPFRYHDLVTKYGKLEKLAVVDLRPRSSAKVEVHFKDQVEEMTIRLDQTVAELKKQLKGLVQLPTSNMLVTYLDHEAPFGPEEMKYNSRALHSYGIRDGDKIYVDSKAK
SIO_010081: tbcel
subclass of: SO_0000673
so part of: tbcel
location: join(2123968..2124100,2125142..2125281,2126371..2126552,2128591..2128847,2130256..2130382,2130933..2131049,2136988..2137306)
location: region:2123968-2137306:1
so has part: feature:2123968-2124100:1:exon
so has part: feature:2125142-2125281:1:exon
so has part: feature:2126371-2126552:1:exon
so has part: feature:2128591-2128847:1:exon
so has part: feature:2130256-2130382:1:exon
so has part: feature:2130933-2131049:1:exon
so has part: feature:2136988-2137306:1:exon

XP_003222853.1
type: Protein
SIO_000068: ncbiprotein

position:2123968:1
position: 2123968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2137306:1
position: 2137306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2123968-2124100:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2125142-2125281:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2126371-2126552:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2128591-2128847:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2130256-2130382:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2130933-2131049:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2136988-2137306:1:exon

LOC103279298
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: LOC103279298
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2137747..2220455)
location: region:2137747-2220455:-1
so has part: feature:2137747-2220455:-1:exon
subclass of: SO_0000011

103279298
type: Gene
SIO_000068: ncbigene

position:2137747:-1
position: 2137747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2220455:-1
position: 2220455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2137747-2220455:-1:exon

LOC103279298
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 28377
nc RNA class: lncRNA
gene: LOC103279298
product: uncharacterized LOC103279298, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_506693.2
SIO_010081: LOC103279298
subclass of: SO_0000673
so part of: LOC103279298
location: complement(join(2137747..2137930,2154799..2154870,2211403..2211464,2217938..2218004,2220380..2220455))
location: region:2137747-2220455:-1
so has part: feature:2220380-2220455:-1:exon
so has part: feature:2217938-2218004:-1:exon
so has part: feature:2211403-2211464:-1:exon
so has part: feature:2154799-2154870:-1:exon
so has part: feature:2137747-2137930:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2220380-2220455:-1:exon

position:2220380:-1
position: 2220380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2217938-2218004:-1:exon

position:2217938:-1
position: 2217938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2218004:-1
position: 2218004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2211403-2211464:-1:exon

position:2211403:-1
position: 2211403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2211464:-1
position: 2211464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2154799-2154870:-1:exon

position:2154799:-1
position: 2154799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2154870:-1
position: 2154870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2137747-2137930:-1:exon

position:2137930:-1
position: 2137930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC103279298
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 28377
nc RNA class: lncRNA
gene: LOC103279298
product: uncharacterized LOC103279298, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_001730473.1
SIO_010081: LOC103279298
subclass of: SO_0000673
so part of: LOC103279298
location: complement(join(2137747..2137930,2154799..2154870,2165592..2165663,2211403..2211464,2217938..2218004,2220380..2220455))
location: region:2137747-2220455:-1
so has part: feature:2220380-2220455:-1:exon
so has part: feature:2217938-2218004:-1:exon
so has part: feature:2211403-2211464:-1:exon
so has part: feature:2165592-2165663:-1:exon
so has part: feature:2154799-2154870:-1:exon
so has part: feature:2137747-2137930:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2220380-2220455:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2217938-2218004:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2211403-2211464:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2165592-2165663:-1:exon

position:2165592:-1
position: 2165592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2165663:-1
position: 2165663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2154799-2154870:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2137747-2137930:-1:exon

tecta
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: tecta
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2146703..2210107
location: region:2146703-2210107:1
so has part: feature:2146703-2210107:1:exon
subclass of: SO_0000010

100564005
type: Gene
SIO_000068: ncbigene

position:2146703:1
position: 2146703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2210107:1
position: 2210107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2146703-2210107:1:exon

tecta
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: tecta
product: tectorin alpha
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003222792.3
SIO_010081: tecta
subclass of: SO_0000673
so part of: tecta
location: join(2146703..2148122,2154261..2154394,2156812..2157099,2164647..2164784,2167759..2167924,2174200..2174612,2175527..2176100,2177856..2178448,2181490..2182066,2183827..2184437,2185070..2185631,2191246..2191445,2196965..2197348,2198211..2198497,2200026..2200306,2200458..2200568,2203545..2203747,2205660..2205823,2206959..2207207,2207306..2207468,2207976..2208063,2208409..2208525,2208940..2210107)
location: region:2146703-2210107:1
so has part: feature:2146703-2148122:1:exon
so has part: feature:2154261-2154394:1:exon
so has part: feature:2156812-2157099:1:exon
so has part: feature:2164647-2164784:1:exon
so has part: feature:2167759-2167924:1:exon
so has part: feature:2174200-2174612:1:exon
so has part: feature:2175527-2176100:1:exon
so has part: feature:2177856-2178448:1:exon
so has part: feature:2181490-2182066:1:exon
so has part: feature:2183827-2184437:1:exon
so has part: feature:2185070-2185631:1:exon
so has part: feature:2191246-2191445:1:exon
so has part: feature:2196965-2197348:1:exon
so has part: feature:2198211-2198497:1:exon
so has part: feature:2200026-2200306:1:exon
so has part: feature:2200458-2200568:1:exon
so has part: feature:2203545-2203747:1:exon
so has part: feature:2205660-2205823:1:exon
so has part: feature:2206959-2207207:1:exon
so has part: feature:2207306-2207468:1:exon
so has part: feature:2207976-2208063:1:exon
so has part: feature:2208409-2208525:1:exon
so has part: feature:2208940-2210107:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2146703-2148122:1:exon

position:2148122:1
position: 2148122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2154261-2154394:1:exon

position:2154261:1
position: 2154261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2154394:1
position: 2154394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2156812-2157099:1:exon

position:2156812:1
position: 2156812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2157099:1
position: 2157099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2164647-2164784:1:exon

position:2164647:1
position: 2164647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2164784:1
position: 2164784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2167759-2167924:1:exon

position:2167759:1
position: 2167759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2167924:1
position: 2167924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2174200-2174612:1:exon

position:2174200:1
position: 2174200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2174612:1
position: 2174612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2175527-2176100:1:exon

position:2175527:1
position: 2175527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2176100:1
position: 2176100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2177856-2178448:1:exon

position:2177856:1
position: 2177856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2178448:1
position: 2178448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2181490-2182066:1:exon

position:2181490:1
position: 2181490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2182066:1
position: 2182066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2183827-2184437:1:exon

position:2183827:1
position: 2183827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2184437:1
position: 2184437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2185070-2185631:1:exon

position:2185070:1
position: 2185070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2185631:1
position: 2185631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2191246-2191445:1:exon

position:2191246:1
position: 2191246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2191445:1
position: 2191445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2196965-2197348:1:exon

position:2196965:1
position: 2196965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2197348:1
position: 2197348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2198211-2198497:1:exon

position:2198211:1
position: 2198211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2198497:1
position: 2198497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2200026-2200306:1:exon

position:2200026:1
position: 2200026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2200306:1
position: 2200306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2200458-2200568:1:exon

position:2200458:1
position: 2200458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2200568:1
position: 2200568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2203545-2203747:1:exon

position:2203545:1
position: 2203545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2203747:1
position: 2203747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2205660-2205823:1:exon

position:2205660:1
position: 2205660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2205823:1
position: 2205823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:2206959-2207207:1:exon

position:2206959:1
position: 2206959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2207207:1
position: 2207207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:2207306-2207468:1:exon

position:2207306:1
position: 2207306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2207468:1
position: 2207468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:2207976-2208063:1:exon

position:2207976:1
position: 2207976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2208063:1
position: 2208063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:2208409-2208525:1:exon

position:2208409:1
position: 2208409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2208525:1
position: 2208525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:2208940-2210107:1:exon

position:2208940:1
position: 2208940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tecta
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: tecta
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-tectorin
translation: MNYQSFFRSWVAFFFIILRQKAQPMAILYPFWQNDTKTPKVDDGSSSEIKLSFPFIFFGIPYRTIFVNNNGVVSFNVVVSQFTPESFPLADGRAFIAPFWADVHNGIRGEIYYRESTDPALLKRVSKDIRKYFKNLPAFSAVSVFISTWEEVTFYGGSSTTPVNTFQALLISDGTSSFAMFNYEDITWTTGTASGGDPLTGLGGVMAQAGFNGGNSTNYFSIPGSRTADIVNIEDTTNVNVPGRWVFKVDGREIDPANGCSFRGQFLRQGEIFWENANCSTKCRCLDFNNEIFCQEVSCGPYEICEPKDKFHQCVPVESSTCVVFGDPHYHTFDGFLFHFQGSCSYLLARQCWPGSNLPFFSVEAKNENRGGSSVSWLKDISVEVYSHKIIIPKGSFGKIMIDDLVMSLPVVLELGAIKIYQSGLSTAVESDFGLLVTYDGDHYAAISVPGSYINATCGLCGNYNKNPEDDALRSDGKMATSVLDLGESWRVYHPEWKCSPGCLDNCSLCDGAMESLYFGPDHCGFINKTRGPLWECGAIVDPTAFVHSCVYDLCSIRDNGTGGLCQAIQAYALVCQALGIPIGEWRVQAGCTTAVQCPEFSHYSVCTSSCPASCSDLTAPLACASPCTEGCECNEGYVLSMDLCVPIHQCGCDVDGRYHAIGESFWASIDCVVQCWCEDGGDIACFNSTCEEGEVCAVENGYQGCYPKRETSCLVTQDHVLQTFDGAVFAYPPDSSYTLIKTCPDRPNYLEVDISKKKPEVSPDWLRTLRIQVANQEVKIGGIDNSEIKVNGYETELPYFHPSGQLEIYRSKNGTVVESEGLIHIQYFDSGLLEVRLSTMYFNCTRGLCGYFNGNSSDEFCFPNGKCTDSLVVFLESWTTFNEICNGECGDLLKACNNDSELLKYYRSRSKCGVINDPSNSSFLECHSVVNVSAYYRTCLFRLCQSGGNESELCDSVARYASACKNAEVDIGQWWRSFNFCPLTCPENSHFEECMTCSESCENLNTGPVCLDSCTEGCQCDEGFAFRGTRCIPKSECGCSFEGHQLATNQSFWMDIDCQYFCYCNGSDNSVRCENLPCKEDEYCLEESGLYSCHPRTDASCIVSGYGHYLTFDGFAFDFQSSCPVVLCTTINRQRSERPDIFPEFTVTAKSEDRDPSLALWVKQVEVEVFNYYIVIHRAYKHTVLINNERLYLPLKLGQGKVNIFTFGFHIVIETDFGLKVVYDWRTFLSVTVPRSFQNNTYGLCGQYNDIPEDDLQTSGGLTVSSINEFGHSWAKRDPFCQVGCGDRCPACRKVEGFWKPQQLCSLIPSKSGVFSRCHSKVNPTFFYKNCLFDTCIDGGAVQTACSWLQNYASTCQTQGIAITGWRNYTLCAVTCPPNSHYENCVSVCQPRCAAIRLKSDCNHYCVEGCQCDPGYVLNGKSCILPHNCGCYSDGKYYEPKQLFWNSDCTRRCRCFRRNLIQCDPRQCKSDEECALRNGVRGCFSMKSSYCIAAGGGVFRTFDGAFLRFPANCAFVLSTICQKLPDVSFQLIINFDKWSSPNLTVISPVYFYINEEQILISDRYTVKVNGTQVNVPFVTGLSTKIYSMEGFLVIDTSPDIQIHYNGFNVIKIAISERLQNKVCGLCGNFNGDRTDDYFTLRGKPVVSSVFLAQSWKTNGMQKSCNELQYAQYAATCDNVQIQVLQSDSYCLKLTDMKGFFQPCYGLLDPLPFYDSCFLDGCYNQKKYQLCGSLAAYGEACRSFGILSTEWIEKENCSGVVEDPCVGADCPNRTCEVDNGGELCGCIEPPPYGNNTHDILDAEVTCKAAQIEVSISKCKLFQLGFEREGVRINDRHCPGIEGEDFISFQINNTKGNCGNIVQSNSTHIMYKNTVWIESANNTGNIITRDRTINVEFSCTYELDIKISLDSVVRPMLSVINLTVPTQEGSFTTKMALYKNSSYKHPYRQGEVVLTTRDILYVGVFVLGADSTHLILMLNKCYATPSRDSNDKLRYFIIEEG…
SIO_010081: tecta
subclass of: SO_0000673
so part of: tecta
location: join(2148059..2148122,2154261..2154394,2156812..2157099,2164647..2164784,2167759..2167924,2174200..2174612,2175527..2176100,2177856..2178448,2181490..2182066,2183827..2184437,2185070..2185631,2191246..2191445,2196965..2197348,2198211..2198497,2200026..2200306,2200458..2200568,2203545..2203747,2205660..2205823,2206959..2207207,2207306..2207468,2207976..2208063,2208409..2208525,2208940..2209040)
location: region:2148059-2209040:1
so has part: feature:2148059-2148122:1:exon
so has part: feature:2154261-2154394:1:exon
so has part: feature:2156812-2157099:1:exon
so has part: feature:2164647-2164784:1:exon
so has part: feature:2167759-2167924:1:exon
so has part: feature:2174200-2174612:1:exon
so has part: feature:2175527-2176100:1:exon
so has part: feature:2177856-2178448:1:exon
so has part: feature:2181490-2182066:1:exon
so has part: feature:2183827-2184437:1:exon
so has part: feature:2185070-2185631:1:exon
so has part: feature:2191246-2191445:1:exon
so has part: feature:2196965-2197348:1:exon
so has part: feature:2198211-2198497:1:exon
so has part: feature:2200026-2200306:1:exon
so has part: feature:2200458-2200568:1:exon
so has part: feature:2203545-2203747:1:exon
so has part: feature:2205660-2205823:1:exon
so has part: feature:2206959-2207207:1:exon
so has part: feature:2207306-2207468:1:exon
so has part: feature:2207976-2208063:1:exon
so has part: feature:2208409-2208525:1:exon
so has part: feature:2208940-2209040:1:exon

XP_003222840.1
type: Protein
SIO_000068: ncbiprotein

position:2148059:1
position: 2148059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2209040:1
position: 2209040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2148059-2148122:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2154261-2154394:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2156812-2157099:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2164647-2164784:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2167759-2167924:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2174200-2174612:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2175527-2176100:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2177856-2178448:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2181490-2182066:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2183827-2184437:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2185070-2185631:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2191246-2191445:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2196965-2197348:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2198211-2198497:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2200026-2200306:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2200458-2200568:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2203545-2203747:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2205660-2205823:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2206959-2207207:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2207306-2207468:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2207976-2208063:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2208409-2208525:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2208940-2209040:1:exon

LOC103279298
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 28377
nc RNA class: lncRNA
gene: LOC103279298
product: uncharacterized LOC103279298, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_001730474.1
SIO_010081: LOC103279298
subclass of: SO_0000673
so part of: LOC103279298
location: complement(join(2150621..2151606,2154799..2154870,2165592..2165663,2211403..2211464,2217938..2218004,2220380..2220455))
location: region:2150621-2220455:-1
so has part: feature:2220380-2220455:-1:exon
so has part: feature:2217938-2218004:-1:exon
so has part: feature:2211403-2211464:-1:exon
so has part: feature:2165592-2165663:-1:exon
so has part: feature:2154799-2154870:-1:exon
so has part: feature:2150621-2151606:-1:exon

position:2150621:-1
position: 2150621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2220380-2220455:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2217938-2218004:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2211403-2211464:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2165592-2165663:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2154799-2154870:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2150621-2151606:-1:exon

position:2151606:-1
position: 2151606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

sc5d
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: sc5d
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2220848..2232050
location: region:2220848-2232050:1
so has part: feature:2220848-2232050:1:exon
subclass of: SO_0000010

100566753
type: Gene
SIO_000068: ncbigene

position:2220848:1
position: 2220848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2232050:1
position: 2232050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2220848-2232050:1:exon

sc5d
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: sc5d
product: sterol-C5-desaturase
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XM_003222806.3
SIO_010081: sc5d
subclass of: SO_0000673
so part of: sc5d
location: join(2220848..2220960,2222387..2222604,2226334..2226466,2226669..2226769,2231013..2232050)
location: region:2220848-2232050:1
so has part: feature:2220848-2220960:1:exon
so has part: feature:2222387-2222604:1:exon
so has part: feature:2226334-2226466:1:exon
so has part: feature:2226669-2226769:1:exon
so has part: feature:2231013-2232050:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2220848-2220960:1:exon

position:2220960:1
position: 2220960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2222387-2222604:1:exon

position:2222387:1
position: 2222387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2222604:1
position: 2222604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2226334-2226466:1:exon

position:2226334:1
position: 2226334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2226466:1
position: 2226466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2226669-2226769:1:exon

position:2226669:1
position: 2226669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2226769:1
position: 2226769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2231013-2232050:1:exon

position:2231013:1
position: 2231013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

sc5d
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: sc5d
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lathosterol oxidase
translation: MDLVLAWADNLVLTPYVFPVTWTEDDPLRQLLSLFVVTNLGALVIYLLFGSLSYYFIFDHELKKHPQFLENQVQREITHTLKSLPWISIPTVAIFFAEVRGYSKLYDNIEDSPYGWFGVVSSMLSFLFFTDMCIYWIHRFLHHKFFYKRFHKPHHAWKVPSPFASHAFHPVDGFLQSTPYHIYPFFFPLHKVTYLGLYIVVNIWTISIHDGNYRVPSLLKEVINGSAHHTDHHLYFDYNYGQYFTLWDRIGGSYKNPSAFEGKGPLDTLKKLKESESNHSREEKMAGDTSKDK
SIO_010081: sc5d
subclass of: SO_0000673
so part of: sc5d
location: join(2222395..2222604,2226334..2226466,2226669..2226769,2231013..2231450)
location: region:2222395-2231450:1
so has part: feature:2222395-2222604:1:exon
so has part: feature:2226334-2226466:1:exon
so has part: feature:2226669-2226769:1:exon
so has part: feature:2231013-2231450:1:exon

XP_003222854.1
type: Protein
SIO_000068: ncbiprotein

position:2222395:1
position: 2222395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2231450:1
position: 2231450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2222395-2222604:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2226334-2226466:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2226669-2226769:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2231013-2231450:1:exon

sorl1
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: sorl1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2299382..2401785
location: region:2299382-2401785:1
so has part: feature:2299382-2401785:1:exon
subclass of: SO_0000010

100566946
type: Gene
SIO_000068: ncbigene

position:2299382:1
position: 2299382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2401785:1
position: 2401785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2299382-2401785:1:exon

sorl1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: sorl1
product: sortilin-related receptor, L(DLR class) A repeats containing
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_016994720.1
SIO_010081: sorl1
subclass of: SO_0000673
so part of: sorl1
location: join(2299382..2299690,2300183..2300308,2302413..2302574,2307373..2307440,2308614..2308794,2312600..2312701,2313391..2313560,2315345..2315537,2318318..2318435,2321090..2321163,2324340..2324418,2324541..2324729,2327148..2327334,2328889..2329017,2329512..2329597,2331131..2331303,2332475..2332606,2336375..2336466,2337723..2337969,2342132..2342270,2343615..2343788,2345123..2345236,2364637..2364759,2364870..2364989,2367193..2367318,2367444..2367551,2369605..2369736,2370113..2370244,2372201..2372335,2373358..2373513,2374780..2374929,2376523..2376651,2379644..2379770,2379887..2380056,2382294..2382406,2382638..2382742,2383848..2383920,2385417..2385499,2386301..2386397,2386699..2386883,2387456..2387575,2388502..2388666,2389423..2389597,2390045..2390151,2390343..2390535,2393100..2393312,2393645..2394666,2394801..2394903,2395049..2401785)
location: region:2299382-2401785:1
so has part: feature:2299382-2299690:1:exon
so has part: feature:2300183-2300308:1:exon
so has part: feature:2302413-2302574:1:exon
so has part: feature:2307373-2307440:1:exon
so has part: feature:2308614-2308794:1:exon
so has part: feature:2312600-2312701:1:exon
so has part: feature:2313391-2313560:1:exon
so has part: feature:2315345-2315537:1:exon
so has part: feature:2318318-2318435:1:exon
so has part: feature:2321090-2321163:1:exon
so has part: feature:2324340-2324418:1:exon
so has part: feature:2324541-2324729:1:exon
so has part: feature:2327148-2327334:1:exon
so has part: feature:2328889-2329017:1:exon
so has part: feature:2329512-2329597:1:exon
so has part: feature:2331131-2331303:1:exon
so has part: feature:2332475-2332606:1:exon
so has part: feature:2336375-2336466:1:exon
so has part: feature:2337723-2337969:1:exon
so has part: feature:2342132-2342270:1:exon
so has part: feature:2343615-2343788:1:exon
so has part: feature:2345123-2345236:1:exon
so has part: feature:2364637-2364759:1:exon
so has part: feature:2364870-2364989:1:exon
so has part: feature:2367193-2367318:1:exon
so has part: feature:2367444-2367551:1:exon
so has part: feature:2369605-2369736:1:exon
so has part: feature:2370113-2370244:1:exon
so has part: feature:2372201-2372335:1:exon
so has part: feature:2373358-2373513:1:exon
so has part: feature:2374780-2374929:1:exon
so has part: feature:2376523-2376651:1:exon
so has part: feature:2379644-2379770:1:exon
so has part: feature:2379887-2380056:1:exon
so has part: feature:2382294-2382406:1:exon
so has part: feature:2382638-2382742:1:exon
so has part: feature:2383848-2383920:1:exon
so has part: feature:2385417-2385499:1:exon
so has part: feature:2386301-2386397:1:exon
so has part: feature:2386699-2386883:1:exon
so has part: feature:2387456-2387575:1:exon
so has part: feature:2388502-2388666:1:exon
so has part: feature:2389423-2389597:1:exon
so has part: feature:2390045-2390151:1:exon
so has part: feature:2390343-2390535:1:exon
so has part: feature:2393100-2393312:1:exon
so has part: feature:2393645-2394666:1:exon
so has part: feature:2394801-2394903:1:exon
so has part: feature:2395049-2401785:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2299382-2299690:1:exon

position:2299690:1
position: 2299690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2300183-2300308:1:exon

position:2300183:1
position: 2300183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2300308:1
position: 2300308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2302413-2302574:1:exon

position:2302413:1
position: 2302413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2302574:1
position: 2302574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2307373-2307440:1:exon

position:2307373:1
position: 2307373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2307440:1
position: 2307440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2308614-2308794:1:exon

position:2308614:1
position: 2308614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2308794:1
position: 2308794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2312600-2312701:1:exon

position:2312600:1
position: 2312600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2312701:1
position: 2312701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2313391-2313560:1:exon

position:2313391:1
position: 2313391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2313560:1
position: 2313560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2315345-2315537:1:exon

position:2315345:1
position: 2315345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2315537:1
position: 2315537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2318318-2318435:1:exon

position:2318318:1
position: 2318318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2318435:1
position: 2318435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2321090-2321163:1:exon

position:2321090:1
position: 2321090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2321163:1
position: 2321163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2324340-2324418:1:exon

position:2324340:1
position: 2324340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2324418:1
position: 2324418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2324541-2324729:1:exon

position:2324541:1
position: 2324541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2324729:1
position: 2324729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2327148-2327334:1:exon

position:2327148:1
position: 2327148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2327334:1
position: 2327334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2328889-2329017:1:exon

position:2328889:1
position: 2328889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2329017:1
position: 2329017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2329512-2329597:1:exon

position:2329512:1
position: 2329512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2329597:1
position: 2329597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2331131-2331303:1:exon

position:2331131:1
position: 2331131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2331303:1
position: 2331303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2332475-2332606:1:exon

position:2332475:1
position: 2332475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2332606:1
position: 2332606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2336375-2336466:1:exon

position:2336375:1
position: 2336375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2336466:1
position: 2336466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:2337723-2337969:1:exon

position:2337723:1
position: 2337723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2337969:1
position: 2337969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:2342132-2342270:1:exon

position:2342132:1
position: 2342132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2342270:1
position: 2342270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:2343615-2343788:1:exon

position:2343615:1
position: 2343615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2343788:1
position: 2343788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:2345123-2345236:1:exon

position:2345123:1
position: 2345123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2345236:1
position: 2345236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:2364637-2364759:1:exon

position:2364637:1
position: 2364637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2364759:1
position: 2364759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:2364870-2364989:1:exon

position:2364870:1
position: 2364870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2364989:1
position: 2364989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:2367193-2367318:1:exon

position:2367193:1
position: 2367193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2367318:1
position: 2367318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:2367444-2367551:1:exon

position:2367444:1
position: 2367444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2367551:1
position: 2367551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:2369605-2369736:1:exon

position:2369605:1
position: 2369605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2369736:1
position: 2369736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:2370113-2370244:1:exon

position:2370113:1
position: 2370113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2370244:1
position: 2370244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:2372201-2372335:1:exon

position:2372201:1
position: 2372201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2372335:1
position: 2372335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:2373358-2373513:1:exon

position:2373358:1
position: 2373358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2373513:1
position: 2373513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:2374780-2374929:1:exon

position:2374780:1
position: 2374780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2374929:1
position: 2374929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:2376523-2376651:1:exon

position:2376523:1
position: 2376523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2376651:1
position: 2376651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:2379644-2379770:1:exon

position:2379644:1
position: 2379644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2379770:1
position: 2379770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:2379887-2380056:1:exon

position:2379887:1
position: 2379887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2380056:1
position: 2380056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:2382294-2382406:1:exon

position:2382294:1
position: 2382294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2382406:1
position: 2382406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:2382638-2382742:1:exon

position:2382638:1
position: 2382638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2382742:1
position: 2382742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:2383848-2383920:1:exon

position:2383848:1
position: 2383848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2383920:1
position: 2383920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:2385417-2385499:1:exon

position:2385417:1
position: 2385417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2385499:1
position: 2385499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:2386301-2386397:1:exon

position:2386301:1
position: 2386301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2386397:1
position: 2386397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 40
SIO_000628: feature:2386699-2386883:1:exon

position:2386699:1
position: 2386699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2386883:1
position: 2386883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 41
SIO_000628: feature:2387456-2387575:1:exon

position:2387456:1
position: 2387456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2387575:1
position: 2387575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 42
SIO_000628: feature:2388502-2388666:1:exon

position:2388502:1
position: 2388502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2388666:1
position: 2388666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 43
SIO_000628: feature:2389423-2389597:1:exon

position:2389423:1
position: 2389423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2389597:1
position: 2389597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 44
SIO_000628: feature:2390045-2390151:1:exon

position:2390045:1
position: 2390045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2390151:1
position: 2390151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 45
SIO_000628: feature:2390343-2390535:1:exon

position:2390343:1
position: 2390343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2390535:1
position: 2390535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 46
SIO_000628: feature:2393100-2393312:1:exon

position:2393100:1
position: 2393100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2393312:1
position: 2393312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 47
SIO_000628: feature:2393645-2394666:1:exon

position:2393645:1
position: 2393645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2394666:1
position: 2394666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 48
SIO_000628: feature:2394801-2394903:1:exon

position:2394801:1
position: 2394801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2394903:1
position: 2394903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 49
SIO_000628: feature:2395049-2401785:1:exon

position:2395049:1
position: 2395049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

sorl1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: sorl1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sortilin-related receptor
translation: MSSFKPPLSVFFISMFGAALCMLLTRLFLCFCLFPSQVSLNDSHNQMVVHWAGEKSNVIVALARDSLALMGPKLSDVYVSYDYGKTFKKISEKFNFGPGNTSQAVIAQFYHSPADNKRYIFVDAYTQYLWLTTDFCKTIQGFSIPFKVSDLLLHSRFPNLVLGFDKSHPNKQLWKSDDFGQTWIMIHEHVKSFTWGIEPYDKPNAVYIERHEPTRSSTILRSTDFFQTRENKEILLEEVEDFQLREKYLFATKSVHLLGSQQQTSVQLWVSFNRKPMQAAQFVTKHPIKEYYIADTSEDQVFVCVSHSNNSTNLYISEAEGLRFSLTLENILYYSPGGVGSDTLVRYFANEPFADFHRVEGVPGVYIATLINGLFSEENMRSVITFDKGGTWEFLQPPEFTRYGEKINCELSKGCSLHLAQRLSQLLNFQLRRMPILSKESAPGLIIATGSVGKNMASKMNVYISSSAGVRWKEVLSGPHYYSWADHGGIIMAVTQGHRDNIRRYSTNEGETWKTFTFSEKPVFVYGLLTEPGEKSTIFTIFGSYKENGHSWLILQINTTDVLGVPCTENDYKLWSPSDERGNECLLGHKTVFKRRTPHATCFNGEDFDRPVMVSNCSCTREDYECDFGFKLSEDLSLEVCIPDPEFAGKPYSPPVPCPVGSTYKKTKGYRRVSGDTCSGGDIEARLEGESVPCPLAEENEFILYTTRYSIHRYDLSSGVSEELPLTGLRGAMALDFDYDHNCLYWADVTLDIIQRLCLNGSSGQEIIISTGLETVEALAFEPISQLLYWVNAGIPKIEVANPDGDLRLTILNSSVLQRPRALTLVPKEGLMFWTDWGDSKPGIYRSEMDGSSPACIVSEGVRWPNGISVDDRWIYWTEAYMDRIERVDFNGMQRSVILDSLPHPYAIAVFKNEIYWNDWSQLSIFRASKHSGSRMETLVDHLNGVMDMKIFYRGKTSGQNACVAKPCSLLCLPKLNNSRSCKCPEGVSSHVLSTGEVKCDCPPGYLLKNSSCVKEDNTCLPSQYRCSNGNCINSIWQCDNDNDCGDMSDEKNCPTTMCDADTQFRCHESGTCVPLSYKCDLEDDCGDNSDESHCEAHQCRSDEFSCNSGMCVRLSWKCDGDNDCRDWSDEANCTAVYHTCETSSFQCHNGHCIPQRWACDGDADCQDGSDEDPTNCETKCNGFQCPNGTCIPSSKRCNGAHDCSDGSDEQHCEPLCTRYMDFVCKNRQQCLLRSMVCDGTVHCRDGSDEDPSYAGCSQDPEFHHTCDQFSFQCQNGVCISLVWKCDGMDDCGDYSDEANCENPTEAPNCSRYYQFQCDNGHCIPNRWKCDEENDCGDWSDEKVCGGSALVPVTTPALATCSPNHFRCNSGICITNSWVCDGYQDCADGSDEDACPTSPVGATSPSAGSPGRCSRFEFECPSTKKCIPNWKRCDGLKDCQDGMDELNCPTHSTLLCPNGFKCEDGETCIMMSERCDGFLDCSDSSDERNCTDDTLVYKVQNLQWTADFSGNISLTWTRPKKMPLASCVYTIHYRMVGESMWKSLETHSNKTNSVLKVLKPDSTYQVKVQVQCLSKVYNTNDFITLRTPEGLPDPPRHLQLTLKREAEGVVACQWAPPTNAHGLIREYVVEYSRTGSKEWSSVRAPSNYSEVERLQVNSLYSFRVAAVTSRGVGNWSDSKSIRTIKGKAIPPPIIHIDGYTENSISFTLKMESSIQVNGYVVKIFWTFDAHRQEKLSLNIDGGKSAQTVSNLTAQTPYEISAWAKTELGDSPLSFAHVVTSGTKPSPPSLKAKAVNQTVVECTWTGPRNVVYGVFYATSFLELYRNPNNATTTLHNITVIVNRDEQYLFLVRVVSPYQGPPSDYIVVKMIPDNRLPPRHLHAVHLAKTFAVIKWESPYDSPDQDMLYAVAVKDLVRKTDRTYKVKTRNSTVEYTIKKLEPGGKYHIIVQLGNMSKEASLKINTVSLAAPDALKIIAENDHILLFWKSLALKENHFSESRGY…
SIO_010081: sorl1
subclass of: SO_0000673
so part of: sorl1
location: join(2299463..2299690,2300183..2300308,2302413..2302574,2307373..2307440,2308614..2308794,2312600..2312701,2313391..2313560,2315345..2315537,2318318..2318435,2321090..2321163,2324340..2324418,2324541..2324729,2327148..2327334,2328889..2329017,2329512..2329597,2331131..2331303,2332475..2332606,2336375..2336466,2337723..2337969,2342132..2342270,2343615..2343788,2345123..2345236,2364637..2364759,2364870..2364989,2367193..2367318,2367444..2367551,2369605..2369736,2370113..2370244,2372201..2372335,2373358..2373513,2374780..2374929,2376523..2376651,2379644..2379770,2379887..2380056,2382294..2382406,2382638..2382742,2383848..2383920,2385417..2385499,2386301..2386397,2386699..2386883,2387456..2387575,2388502..2388666,2389423..2389597,2390045..2390151,2390343..2390535,2393100..2393312,2393645..2393712)
location: region:2299463-2393712:1
so has part: feature:2299463-2299690:1:exon
so has part: feature:2300183-2300308:1:exon
so has part: feature:2302413-2302574:1:exon
so has part: feature:2307373-2307440:1:exon
so has part: feature:2308614-2308794:1:exon
so has part: feature:2312600-2312701:1:exon
so has part: feature:2313391-2313560:1:exon
so has part: feature:2315345-2315537:1:exon
so has part: feature:2318318-2318435:1:exon
so has part: feature:2321090-2321163:1:exon
so has part: feature:2324340-2324418:1:exon
so has part: feature:2324541-2324729:1:exon
so has part: feature:2327148-2327334:1:exon
so has part: feature:2328889-2329017:1:exon
so has part: feature:2329512-2329597:1:exon
so has part: feature:2331131-2331303:1:exon
so has part: feature:2332475-2332606:1:exon
so has part: feature:2336375-2336466:1:exon
so has part: feature:2337723-2337969:1:exon
so has part: feature:2342132-2342270:1:exon
so has part: feature:2343615-2343788:1:exon
so has part: feature:2345123-2345236:1:exon
so has part: feature:2364637-2364759:1:exon
so has part: feature:2364870-2364989:1:exon
so has part: feature:2367193-2367318:1:exon
so has part: feature:2367444-2367551:1:exon
so has part: feature:2369605-2369736:1:exon
so has part: feature:2370113-2370244:1:exon
so has part: feature:2372201-2372335:1:exon
so has part: feature:2373358-2373513:1:exon
so has part: feature:2374780-2374929:1:exon
so has part: feature:2376523-2376651:1:exon
so has part: feature:2379644-2379770:1:exon
so has part: feature:2379887-2380056:1:exon
so has part: feature:2382294-2382406:1:exon
so has part: feature:2382638-2382742:1:exon
so has part: feature:2383848-2383920:1:exon
so has part: feature:2385417-2385499:1:exon
so has part: feature:2386301-2386397:1:exon
so has part: feature:2386699-2386883:1:exon
so has part: feature:2387456-2387575:1:exon
so has part: feature:2388502-2388666:1:exon
so has part: feature:2389423-2389597:1:exon
so has part: feature:2390045-2390151:1:exon
so has part: feature:2390343-2390535:1:exon
so has part: feature:2393100-2393312:1:exon
so has part: feature:2393645-2393712:1:exon

XP_016850209.1
type: Protein
SIO_000068: ncbiprotein

position:2299463:1
position: 2299463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2393712:1
position: 2393712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2299463-2299690:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2300183-2300308:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2302413-2302574:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2307373-2307440:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2308614-2308794:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2312600-2312701:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2313391-2313560:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2315345-2315537:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2318318-2318435:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2321090-2321163:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2324340-2324418:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2324541-2324729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2327148-2327334:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2328889-2329017:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2329512-2329597:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2331131-2331303:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2332475-2332606:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2336375-2336466:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2337723-2337969:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2342132-2342270:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2343615-2343788:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2345123-2345236:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2364637-2364759:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2364870-2364989:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:2367193-2367318:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:2367444-2367551:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:2369605-2369736:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:2370113-2370244:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:2372201-2372335:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:2373358-2373513:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:2374780-2374929:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:2376523-2376651:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:2379644-2379770:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:2379887-2380056:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:2382294-2382406:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:2382638-2382742:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:2383848-2383920:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:2385417-2385499:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:2386301-2386397:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:2386699-2386883:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:2387456-2387575:1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:2388502-2388666:1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:2389423-2389597:1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:2390045-2390151:1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:2390343-2390535:1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:2393100-2393312:1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:2393645-2393712:1:exon

LOC107983029
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: LOC107983029
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2358888..2362844
location: region:2358888-2362844:1
so has part: feature:2358888-2362844:1:exon
subclass of: SO_0000010

107983029
type: Gene
SIO_000068: ncbigene

position:2358888:1
position: 2358888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2362844:1
position: 2362844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2358888-2362844:1:exon

LOC107983029
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: LOC107983029
product: sortilin-related receptor-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_016994719.1
SIO_010081: LOC107983029
subclass of: SO_0000673
so part of: LOC107983029
location: join(2358888..2358996,2362135..2362261,2362381..2362844)
location: region:2358888-2362844:1
so has part: feature:2358888-2358996:1:exon
so has part: feature:2362135-2362261:1:exon
so has part: feature:2362381-2362844:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2358888-2358996:1:exon

position:2358996:1
position: 2358996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2362135-2362261:1:exon

position:2362135:1
position: 2362135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2362261:1
position: 2362261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2362381-2362844:1:exon

position:2362381:1
position: 2362381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC107983029
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: LOC107983029
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sortilin-related receptor-like
translation: MMSERCDGFLDCSDSSDERNCTDDTLVYKVQNLQWTADFSGNISLTWTRPKKMPLASCVYTIHYRMVGESMWKSLETHSNKTNSVLKVLKPDSTYQVKVQVQCLSKVYNTNDFITLRTPEGRKSTWLDGVE
SIO_010081: LOC107983029
subclass of: SO_0000673
so part of: LOC107983029
location: join(2358930..2358996,2362135..2362261,2362381..2362582)
location: region:2358930-2362582:1
so has part: feature:2358930-2358996:1:exon
so has part: feature:2362135-2362261:1:exon
so has part: feature:2362381-2362582:1:exon

XP_016850208.1
type: Protein
SIO_000068: ncbiprotein

position:2358930:1
position: 2358930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2362582:1
position: 2362582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2358930-2358996:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2362135-2362261:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2362381-2362582:1:exon

mir125b-1
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
alternative label: aca-mir-125b-1
gene: mir125b-1
gene synonym: aca-mir-125b-1
note: microRNA 125b-1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: complement(2579058..2579147)
location: region:2579058-2579147:-1
so has part: feature:2579058-2579147:-1:exon
subclass of: SO_0000571

104796701
type: Gene
SIO_000068: ncbigene

MI0018725
type: miRBase
SIO_000068: mirbase

position:2579058:-1
position: 2579058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2579147:-1
position: 2579147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2579058-2579147:-1:exon

mir125b-1
type: Precursor RNA
subclass of: SO_0000185
RO_0002162: 28377
alternative label: aca-mir-125b-1
gene: mir125b-1
gene synonym: aca-mir-125b-1
product: microRNA 125b-1
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NR_129836.1
SIO_010081: mir125b-1
subclass of: SO_0000673
so part of: mir125b-1
location: complement(2579058..2579147)
location: region:2579058-2579147:-1
so has part: feature:2579058-2579147:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2579058-2579147:-1:exon

mir125b-1
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 28377
alternative label: aca-mir-125b-1
nc RNA class: miRNA
gene: mir125b-1
gene synonym: aca-mir-125b-1
product: aca-miR-125b
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
SIO_010081: mir125b-1
subclass of: SO_0000673
so part of: mir125b-1
location: complement(2579112..2579133)
location: region:2579112-2579133:-1
so has part: feature:2579112-2579133:-1:exon

MIMAT0021729
type: miRBase
SIO_000068: mirbase

position:2579112:-1
position: 2579112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2579133:-1
position: 2579133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2579112-2579133:-1:exon

mir100
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
alternative label: aca-mir-100
gene: mir100
gene synonym: aca-mir-100
note: microRNA 100; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: complement(2624853..2624947)
location: region:2624853-2624947:-1
so has part: feature:2624853-2624947:-1:exon
subclass of: SO_0000571

104797391
type: Gene
SIO_000068: ncbigene

MI0018711
type: miRBase
SIO_000068: mirbase

position:2624853:-1
position: 2624853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2624947:-1
position: 2624947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2624853-2624947:-1:exon

mir100
type: Precursor RNA
subclass of: SO_0000185
RO_0002162: 28377
alternative label: aca-mir-100
gene: mir100
gene synonym: aca-mir-100
product: microRNA 100
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NR_129822.1
SIO_010081: mir100
subclass of: SO_0000673
so part of: mir100
location: complement(2624853..2624947)
location: region:2624853-2624947:-1
so has part: feature:2624853-2624947:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2624853-2624947:-1:exon

mir100
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 28377
alternative label: aca-mir-100
nc RNA class: miRNA
gene: mir100
gene synonym: aca-mir-100
product: aca-miR-100
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
SIO_010081: mir100
subclass of: SO_0000673
so part of: mir100
location: complement(2624907..2624928)
location: region:2624907-2624928:-1
so has part: feature:2624907-2624928:-1:exon

MIMAT0021709
type: miRBase
SIO_000068: mirbase

position:2624907:-1
position: 2624907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2624928:-1
position: 2624928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2624907-2624928:-1:exon

LOC103279299
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: LOC103279299
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2631873..2671474)
location: region:2631873-2671474:-1
so has part: feature:2631873-2671474:-1:exon
subclass of: SO_0000011

103279299
type: Gene
SIO_000068: ncbigene

position:2631873:-1
position: 2631873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2671474:-1
position: 2671474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2631873-2671474:-1:exon

LOC103279299
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 28377
nc RNA class: lncRNA
gene: LOC103279299
product: uncharacterized LOC103279299
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_506694.2
SIO_010081: LOC103279299
subclass of: SO_0000673
so part of: LOC103279299
location: complement(join(2631873..2632034,2653064..2653232,2670991..2671474))
location: region:2631873-2671474:-1
so has part: feature:2670991-2671474:-1:exon
so has part: feature:2653064-2653232:-1:exon
so has part: feature:2631873-2632034:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2670991-2671474:-1:exon

position:2670991:-1
position: 2670991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2653064-2653232:-1:exon

position:2653064:-1
position: 2653064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2653232:-1
position: 2653232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2631873-2632034:-1:exon

position:2632034:-1
position: 2632034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ubash3b
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: ubash3b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2861757..2889499
location: region:2861757-2889499:1
so has part: feature:2861757-2889499:1:exon
subclass of: SO_0000010

100567143
type: Gene
SIO_000068: ncbigene

position:2861757:1
position: 2861757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2889499:1
position: 2889499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2861757-2889499:1:exon

ubash3b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: ubash3b
product: ubiquitin associated and SH3 domain containing B, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_016994721.1
SIO_010081: ubash3b
subclass of: SO_0000673
so part of: ubash3b
location: join(2861757..2862005,2863857..2864043,2865596..2865794,2869014..2869183,2871440..2871648,2871739..2871874,2873449..2873569,2876065..2876187,2881855..2881947,2882872..2883016,2886463..2886569,2887659..2887768,2888945..2889499)
location: region:2861757-2889499:1
so has part: feature:2861757-2862005:1:exon
so has part: feature:2863857-2864043:1:exon
so has part: feature:2865596-2865794:1:exon
so has part: feature:2869014-2869183:1:exon
so has part: feature:2871440-2871648:1:exon
so has part: feature:2871739-2871874:1:exon
so has part: feature:2873449-2873569:1:exon
so has part: feature:2876065-2876187:1:exon
so has part: feature:2881855-2881947:1:exon
so has part: feature:2882872-2883016:1:exon
so has part: feature:2886463-2886569:1:exon
so has part: feature:2887659-2887768:1:exon
so has part: feature:2888945-2889499:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2861757-2862005:1:exon

position:2862005:1
position: 2862005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2863857-2864043:1:exon

position:2863857:1
position: 2863857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2864043:1
position: 2864043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2865596-2865794:1:exon

position:2865596:1
position: 2865596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2865794:1
position: 2865794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2869014-2869183:1:exon

position:2869014:1
position: 2869014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2869183:1
position: 2869183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2871440-2871648:1:exon

position:2871440:1
position: 2871440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2871648:1
position: 2871648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2871739-2871874:1:exon

position:2871739:1
position: 2871739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2871874:1
position: 2871874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2873449-2873569:1:exon

position:2873449:1
position: 2873449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2873569:1
position: 2873569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2876065-2876187:1:exon

position:2876065:1
position: 2876065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2876187:1
position: 2876187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2881855-2881947:1:exon

position:2881855:1
position: 2881855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2881947:1
position: 2881947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2882872-2883016:1:exon

position:2882872:1
position: 2882872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2883016:1
position: 2883016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2886463-2886569:1:exon

position:2886463:1
position: 2886463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2886569:1
position: 2886569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2887659-2887768:1:exon

position:2887659:1
position: 2887659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2887768:1
position: 2887768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2888945-2889499:1:exon

position:2888945:1
position: 2888945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ubash3b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: ubash3b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-associated and SH3 domain-containing protein B isoform X1
translation: MQPVPPSEHASTNLGFPFPCRQKALASTGGRSVQAACDWLFSHVCDPFLDDPLPREYVLYLRPTGPLAQKLSDFWQHSKQLCGKNKAHNIFPHITLCQFFMCEDSKVDTLCEALHTTVTRWRCKLPAPLPLELYTSSNFIGLFVKEESAEILKKFAADFATEASSKADVHVEPHKKQLHVTLAYHFQASHLPTLEKLAQSIDVKLGCDWVATIFSRDIRFANHETLQVIYPYVPQNDDELELVPGDFIFMSPVEQITTSEGWIYGTSFATGCSGLLPENYITKADECGTWVFHGSYSILNPSSSSSLLMFTDGVMDRRLQEDQGPGDTGPLTIFCQNMQPLRITNPPGPQKRCLFVCRHGERMDVVFGKYWLSQCFDAKGRYVRTNLNMPHSLPQRSGGFRDYEKDAPITVFGCTQARLVGEALLESNTIIHHIYCSPSLRCVQTAHYILKGLQQENSLKIRVEPGLFEWTKWVSGSSLPAWIPPMDLAAANLSVDTTYRPHIPVSKLGISEPYDTYISRSYQVTKEILSECKAKGANVLIVAHASSLEACTCQLQGLSPQNAKDFVQMVRKIPYLGFCCCEELGDTGLWQLTDPPILPLTHGPTGGFNWRETLLQE
SIO_010081: ubash3b
subclass of: SO_0000673
so part of: ubash3b
location: join(2861890..2862005,2863857..2864043,2865596..2865794,2869014..2869183,2871440..2871648,2871739..2871874,2873449..2873569,2876065..2876187,2881855..2881947,2882872..2883016,2886463..2886569,2887659..2887768,2888945..2889082)
location: region:2861890-2889082:1
so has part: feature:2861890-2862005:1:exon
so has part: feature:2863857-2864043:1:exon
so has part: feature:2865596-2865794:1:exon
so has part: feature:2869014-2869183:1:exon
so has part: feature:2871440-2871648:1:exon
so has part: feature:2871739-2871874:1:exon
so has part: feature:2873449-2873569:1:exon
so has part: feature:2876065-2876187:1:exon
so has part: feature:2881855-2881947:1:exon
so has part: feature:2882872-2883016:1:exon
so has part: feature:2886463-2886569:1:exon
so has part: feature:2887659-2887768:1:exon
so has part: feature:2888945-2889082:1:exon

XP_016850210.1
type: Protein
SIO_000068: ncbiprotein

position:2861890:1
position: 2861890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2889082:1
position: 2889082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2861890-2862005:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2863857-2864043:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2865596-2865794:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2869014-2869183:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2871440-2871648:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2871739-2871874:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2873449-2873569:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2876065-2876187:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2881855-2881947:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2882872-2883016:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2886463-2886569:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2887659-2887768:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2888945-2889082:1:exon

ubash3b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: ubash3b
product: ubiquitin associated and SH3 domain containing B, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_008113766.2
SIO_010081: ubash3b
subclass of: SO_0000673
so part of: ubash3b
location: join(2861913..2862009,2863857..2864043,2865596..2865794,2869014..2869183,2871440..2871648,2871739..2871874,2873449..2873569,2876065..2876187,2881855..2881947,2882872..2883016,2886463..2886569,2887659..2887768,2888945..2889499)
location: region:2861913-2889499:1
so has part: feature:2861913-2862009:1:exon
so has part: feature:2863857-2864043:1:exon
so has part: feature:2865596-2865794:1:exon
so has part: feature:2869014-2869183:1:exon
so has part: feature:2871440-2871648:1:exon
so has part: feature:2871739-2871874:1:exon
so has part: feature:2873449-2873569:1:exon
so has part: feature:2876065-2876187:1:exon
so has part: feature:2881855-2881947:1:exon
so has part: feature:2882872-2883016:1:exon
so has part: feature:2886463-2886569:1:exon
so has part: feature:2887659-2887768:1:exon
so has part: feature:2888945-2889499:1:exon

position:2861913:1
position: 2861913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2861913-2862009:1:exon

position:2862009:1
position: 2862009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2863857-2864043:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2865596-2865794:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2869014-2869183:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2871440-2871648:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2871739-2871874:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2873449-2873569:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2876065-2876187:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2881855-2881947:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2882872-2883016:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2886463-2886569:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2887659-2887768:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2888945-2889499:1:exon

ubash3b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: ubash3b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-associated and SH3 domain-containing protein B isoform X2
translation: MRALTLAFLFPAGRKPWRQPEVEVSKRHVTGWLFSHVCDPFLDDPLPREYVLYLRPTGPLAQKLSDFWQHSKQLCGKNKAHNIFPHITLCQFFMCEDSKVDTLCEALHTTVTRWRCKLPAPLPLELYTSSNFIGLFVKEESAEILKKFAADFATEASSKADVHVEPHKKQLHVTLAYHFQASHLPTLEKLAQSIDVKLGCDWVATIFSRDIRFANHETLQVIYPYVPQNDDELELVPGDFIFMSPVEQITTSEGWIYGTSFATGCSGLLPENYITKADECGTWVFHGSYSILNPSSSSSLLMFTDGVMDRRLQEDQGPGDTGPLTIFCQNMQPLRITNPPGPQKRCLFVCRHGERMDVVFGKYWLSQCFDAKGRYVRTNLNMPHSLPQRSGGFRDYEKDAPITVFGCTQARLVGEALLESNTIIHHIYCSPSLRCVQTAHYILKGLQQENSLKIRVEPGLFEWTKWVSGSSLPAWIPPMDLAAANLSVDTTYRPHIPVSKLGISEPYDTYISRSYQVTKEILSECKAKGANVLIVAHASSLEACTCQLQGLSPQNAKDFVQMVRKIPYLGFCCCEELGDTGLWQLTDPPILPLTHGPTGGFNWRETLLQE
SIO_010081: ubash3b
subclass of: SO_0000673
so part of: ubash3b
location: join(2861915..2862009,2863857..2864043,2865596..2865794,2869014..2869183,2871440..2871648,2871739..2871874,2873449..2873569,2876065..2876187,2881855..2881947,2882872..2883016,2886463..2886569,2887659..2887768,2888945..2889082)
location: region:2861915-2889082:1
so has part: feature:2861915-2862009:1:exon
so has part: feature:2863857-2864043:1:exon
so has part: feature:2865596-2865794:1:exon
so has part: feature:2869014-2869183:1:exon
so has part: feature:2871440-2871648:1:exon
so has part: feature:2871739-2871874:1:exon
so has part: feature:2873449-2873569:1:exon
so has part: feature:2876065-2876187:1:exon
so has part: feature:2881855-2881947:1:exon
so has part: feature:2882872-2883016:1:exon
so has part: feature:2886463-2886569:1:exon
so has part: feature:2887659-2887768:1:exon
so has part: feature:2888945-2889082:1:exon

XP_008111973.1
type: Protein
SIO_000068: ncbiprotein

position:2861915:1
position: 2861915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2861915-2862009:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2863857-2864043:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2865596-2865794:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2869014-2869183:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2871440-2871648:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2871739-2871874:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2873449-2873569:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2876065-2876187:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2881855-2881947:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2882872-2883016:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2886463-2886569:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2887659-2887768:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2888945-2889082:1:exon

crtam
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: crtam
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2902166..>2916184
location: region:2902166-2916184:1
so has part: feature:2902166-2916184:1:exon
subclass of: SO_0000010

103279300
type: Gene
SIO_000068: ncbigene

position:2902166:1
position: 2902166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2916184:1
position: 2916184
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2902166-2916184:1:exon

crtam
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: crtam
product: cytotoxic and regulatory T-cell molecule, transcript variant X1
inference: similar to RNA sequence, mRNA (same species):INSD:GAFN01007623.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 390 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_008113748.2
SIO_010081: crtam
subclass of: SO_0000673
so part of: crtam
location: join(2902166..2902785,2905740..2905892,2907133..2907276,2908592..2908747,2910997..2911071,2911175..2911279,2912279..2912377,2914447..2914593,2916101..>2916184)
location: region:2902166-2916184:1
so has part: feature:2902166-2902785:1:exon
so has part: feature:2905740-2905892:1:exon
so has part: feature:2907133-2907276:1:exon
so has part: feature:2908592-2908747:1:exon
so has part: feature:2910997-2911071:1:exon
so has part: feature:2911175-2911279:1:exon
so has part: feature:2912279-2912377:1:exon
so has part: feature:2914447-2914593:1:exon
so has part: feature:2916101-2916184:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2902166-2902785:1:exon

position:2902785:1
position: 2902785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2905740-2905892:1:exon

position:2905740:1
position: 2905740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2905892:1
position: 2905892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2907133-2907276:1:exon

position:2907133:1
position: 2907133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2907276:1
position: 2907276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2908592-2908747:1:exon

position:2908592:1
position: 2908592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2908747:1
position: 2908747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2910997-2911071:1:exon

position:2910997:1
position: 2910997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2911071:1
position: 2911071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2911175-2911279:1:exon

position:2911175:1
position: 2911175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2911279:1
position: 2911279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2912279-2912377:1:exon

position:2912279:1
position: 2912279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2912377:1
position: 2912377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2914447-2914593:1:exon

position:2914447:1
position: 2914447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2914593:1
position: 2914593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2916101-2916184:1:exon

position:2916101:1
position: 2916101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

crtam
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: crtam
product: cytotoxic and regulatory T-cell molecule, transcript variant X2
inference: similar to RNA sequence, mRNA (same species):INSD:GAFN01007623.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 390 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_016994722.1
SIO_010081: crtam
subclass of: SO_0000673
so part of: crtam
location: join(2902166..2902785,2905740..2905892,2908592..2908747,2910997..2911071,2911175..2911279,2912279..2912377,2914447..2914593,2916101..>2916184)
location: region:2902166-2916184:1
so has part: feature:2902166-2902785:1:exon
so has part: feature:2905740-2905892:1:exon
so has part: feature:2908592-2908747:1:exon
so has part: feature:2910997-2911071:1:exon
so has part: feature:2911175-2911279:1:exon
so has part: feature:2912279-2912377:1:exon
so has part: feature:2914447-2914593:1:exon
so has part: feature:2916101-2916184:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2902166-2902785:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2905740-2905892:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2908592-2908747:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2910997-2911071:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2911175-2911279:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2912279-2912377:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2914447-2914593:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2916101-2916184:1:exon

crtam
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: crtam
inference: similar to RNA sequence, mRNA (same species):INSD:GAFN01007623.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 137 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytotoxic and regulatory T-cell molecule isoform X1
translation: MQDEGLYTCFYYSDIIQRKQVNVIVLAAPSQPLLEALRTRSHKEEAKIVLKCSTWGSKPPPQVTWMLDNGVELFGDSEHQRDAKKYNSTTILTVRKYTQMSSFTCIIHHEALRGGNLTATLYLKPFKSSTDLAPNATEFSTVTLRNSPNYTASDKIFNATEGNLTMPTLSTITEESTLNFNSTISNGTLKILNATEGKFPAWTPPTSLDSATVNSETTNGANLTYESIVGKKPSVLLPALVTMLLVVLSIIVLLFVVKLWKAHREWKKGNDVSEQTLESNRSRPNEDSKGQDKNWKVVPWKTSKKYVIRGSCMRASKNSEGSQESSVFEKHLPYLIRETDL
SIO_010081: crtam
subclass of: SO_0000673
so part of: crtam
location: join(2905814..2905892,2907133..2907276,2908592..2908747,2910997..2911071,2911175..2911279,2912279..2912377,2914447..2914593,2916101..>2916184)
location: region:2905814-2916184:1
so has part: feature:2905814-2905892:1:exon
so has part: feature:2907133-2907276:1:exon
so has part: feature:2908592-2908747:1:exon
so has part: feature:2910997-2911071:1:exon
so has part: feature:2911175-2911279:1:exon
so has part: feature:2912279-2912377:1:exon
so has part: feature:2914447-2914593:1:exon
so has part: feature:2916101-2916184:1:exon

XP_008111955.1
type: Protein
SIO_000068: ncbiprotein

position:2905814:1
position: 2905814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2905814-2905892:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2907133-2907276:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2908592-2908747:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2910997-2911071:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2911175-2911279:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2912279-2912377:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2914447-2914593:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2916101-2916184:1:exon

crtam
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: crtam
inference: similar to RNA sequence, mRNA (same species):INSD:GAFN01007623.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 137 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytotoxic and regulatory T-cell molecule isoform X2
translation: MQDEGLYTCFYYSDIIQRKQVNVIVLGDSEHQRDAKKYNSTTILTVRKYTQMSSFTCIIHHEALRGGNLTATLYLKPFKSSTDLAPNATEFSTVTLRNSPNYTASDKIFNATEGNLTMPTLSTITEESTLNFNSTISNGTLKILNATEGKFPAWTPPTSLDSATVNSETTNGANLTYESIVGKKPSVLLPALVTMLLVVLSIIVLLFVVKLWKAHREWKKGNDVSEQTLESNRSRPNEDSKGQDKNWKVVPWKTSKKYVIRGSCMRASKNSEGSQESSVFEKHLPYLIRETDL
SIO_010081: crtam
subclass of: SO_0000673
so part of: crtam
location: join(2905814..2905892,2908592..2908747,2910997..2911071,2911175..2911279,2912279..2912377,2914447..2914593,2916101..>2916184)
location: region:2905814-2916184:1
so has part: feature:2905814-2905892:1:exon
so has part: feature:2908592-2908747:1:exon
so has part: feature:2910997-2911071:1:exon
so has part: feature:2911175-2911279:1:exon
so has part: feature:2912279-2912377:1:exon
so has part: feature:2914447-2914593:1:exon
so has part: feature:2916101-2916184:1:exon

XP_016850211.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2905814-2905892:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2908592-2908747:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2910997-2911071:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2911175-2911279:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2912279-2912377:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2914447-2914593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2916101-2916184:1:exon

cah11orf63
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: cah11orf63
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2920670..2959525
location: region:2920670-2959525:1
so has part: feature:2920670-2959525:1:exon
subclass of: SO_0000010

100564201
type: Gene
SIO_000068: ncbigene

position:2920670:1
position: 2920670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2959525:1
position: 2959525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2920670-2959525:1:exon

cah11orf63
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: cah11orf63
product: chromosome a open reading frame, human C11orf63, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_008113749.1
SIO_010081: cah11orf63
subclass of: SO_0000673
so part of: cah11orf63
location: join(2920670..2920743,2923269..2923586,2927936..2928392,2946615..2947300,2948885..2949176,2953193..2953273,2957160..2957285,2959128..2959525)
location: region:2920670-2959525:1
so has part: feature:2920670-2920743:1:exon
so has part: feature:2923269-2923586:1:exon
so has part: feature:2927936-2928392:1:exon
so has part: feature:2946615-2947300:1:exon
so has part: feature:2948885-2949176:1:exon
so has part: feature:2953193-2953273:1:exon
so has part: feature:2957160-2957285:1:exon
so has part: feature:2959128-2959525:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2920670-2920743:1:exon

position:2920743:1
position: 2920743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2923269-2923586:1:exon

position:2923269:1
position: 2923269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2923586:1
position: 2923586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2927936-2928392:1:exon

position:2927936:1
position: 2927936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2928392:1
position: 2928392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2946615-2947300:1:exon

position:2946615:1
position: 2946615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2947300:1
position: 2947300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2948885-2949176:1:exon

position:2948885:1
position: 2948885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2949176:1
position: 2949176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2953193-2953273:1:exon

position:2953193:1
position: 2953193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2953273:1
position: 2953273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2957160-2957285:1:exon

position:2957160:1
position: 2957160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2957285:1
position: 2957285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2959128-2959525:1:exon

position:2959128:1
position: 2959128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cah11orf63
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: cah11orf63
product: chromosome a open reading frame, human C11orf63, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_016994723.1
SIO_010081: cah11orf63
subclass of: SO_0000673
so part of: cah11orf63
location: join(2923217..2923586,2927936..2928392,2946615..2947300,2948885..2949176,2953193..2953273,2957160..2957285,2959128..2959525)
location: region:2923217-2959525:1
so has part: feature:2923217-2923586:1:exon
so has part: feature:2927936-2928392:1:exon
so has part: feature:2946615-2947300:1:exon
so has part: feature:2948885-2949176:1:exon
so has part: feature:2953193-2953273:1:exon
so has part: feature:2957160-2957285:1:exon
so has part: feature:2959128-2959525:1:exon

position:2923217:1
position: 2923217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2923217-2923586:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2927936-2928392:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2946615-2947300:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2948885-2949176:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2953193-2953273:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2957160-2957285:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2959128-2959525:1:exon

cah11orf63
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: cah11orf63
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C11orf63 homolog isoform X1
translation: MSCTECVSLIVFDLLSSMNASKASPKGLVQPHVHYSFLQTASEGLSQNDSDSESLAQEIEYQLELQERIHQTEKLVDEDNRDSLEEDDSLEEDSLEEGGDGGGEPDAEETPSPNGKEDGLNASTKRTVERYSELRYNPNWRTNNKEGSSLPELGLSHPKDEEGSPGPSQLRFMHTDNQPQDRPQTLSPDFDSHEHTTSAREESYGLFNKKEIVRHYRRSPGTHSDSFSSQVKECQHRPGKDFIEKNKLTLGISKKASNSYLLLHGKKQREIHQNQAHLDKMPGMGTTNSSQDRSLEGNPLSRIPAQHPLEDRVELRGKLGRCHNMVESENALLDSSSYTEVSDLEPDRRPLLHQIFYPDPSVTSHFTSSEDNSFPTDPSCHVQQRSKPRSMNLAFARNPHQPSSYQNFPGLHSPSTGEEEKKETLHAPENPSGPCYGDPYRRTVSEPRSFARHGKRQNFLGHGGLSSTYHSGFQRPVNKEASTWDPNLIRTEKNPSNYVSGHSGPFQPPARDLIEAPSPTTRLIQAAERRHQEISQLADAHLSGNQFASMFPAIIQRGDSDSRLNTESCEESQPVLSRSNSEGYLLQMEKHKERKEKENKKGSRTKGYVKMDVKLGGLGPDYEGIKEKSEKIKQQKEYAKHVKEHNLKNIASTRKTLAKPENKSTLSRKKALEYAKTIPKPKLFVSRPPLEQEPKEERHLARTLNGENLPPIVSLESLQNRHEKEKQVVAAFKTLHIV
SIO_010081: cah11orf63
subclass of: SO_0000673
so part of: cah11orf63
location: join(2923219..2923586,2927936..2928392,2946615..2947300,2948885..2949176,2953193..2953273,2957160..2957285,2959128..2959334)
location: region:2923219-2959334:1
so has part: feature:2923219-2923586:1:exon
so has part: feature:2927936-2928392:1:exon
so has part: feature:2946615-2947300:1:exon
so has part: feature:2948885-2949176:1:exon
so has part: feature:2953193-2953273:1:exon
so has part: feature:2957160-2957285:1:exon
so has part: feature:2959128-2959334:1:exon

XP_016850212.1
type: Protein
SIO_000068: ncbiprotein

position:2923219:1
position: 2923219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2959334:1
position: 2959334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2923219-2923586:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2927936-2928392:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2946615-2947300:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2948885-2949176:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2953193-2953273:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2957160-2957285:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2959128-2959334:1:exon

cah11orf63
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: cah11orf63
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C11orf63 homolog isoform X2
translation: MNASKASPKGLVQPHVHYSFLQTASEGLSQNDSDSESLAQEIEYQLELQERIHQTEKLVDEDNRDSLEEDDSLEEDSLEEGGDGGGEPDAEETPSPNGKEDGLNASTKRTVERYSELRYNPNWRTNNKEGSSLPELGLSHPKDEEGSPGPSQLRFMHTDNQPQDRPQTLSPDFDSHEHTTSAREESYGLFNKKEIVRHYRRSPGTHSDSFSSQVKECQHRPGKDFIEKNKLTLGISKKASNSYLLLHGKKQREIHQNQAHLDKMPGMGTTNSSQDRSLEGNPLSRIPAQHPLEDRVELRGKLGRCHNMVESENALLDSSSYTEVSDLEPDRRPLLHQIFYPDPSVTSHFTSSEDNSFPTDPSCHVQQRSKPRSMNLAFARNPHQPSSYQNFPGLHSPSTGEEEKKETLHAPENPSGPCYGDPYRRTVSEPRSFARHGKRQNFLGHGGLSSTYHSGFQRPVNKEASTWDPNLIRTEKNPSNYVSGHSGPFQPPARDLIEAPSPTTRLIQAAERRHQEISQLADAHLSGNQFASMFPAIIQRGDSDSRLNTESCEESQPVLSRSNSEGYLLQMEKHKERKEKENKKGSRTKGYVKMDVKLGGLGPDYEGIKEKSEKIKQQKEYAKHVKEHNLKNIASTRKTLAKPENKSTLSRKKALEYAKTIPKPKLFVSRPPLEQEPKEERHLARTLNGENLPPIVSLESLQNRHEKEKQVVAAFKTLHIV
SIO_010081: cah11orf63
subclass of: SO_0000673
so part of: cah11orf63
location: join(2923270..2923586,2927936..2928392,2946615..2947300,2948885..2949176,2953193..2953273,2957160..2957285,2959128..2959334)
location: region:2923270-2959334:1
so has part: feature:2923270-2923586:1:exon
so has part: feature:2927936-2928392:1:exon
so has part: feature:2946615-2947300:1:exon
so has part: feature:2948885-2949176:1:exon
so has part: feature:2953193-2953273:1:exon
so has part: feature:2957160-2957285:1:exon
so has part: feature:2959128-2959334:1:exon

XP_008111956.1
type: Protein
SIO_000068: ncbiprotein

position:2923270:1
position: 2923270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2923270-2923586:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2927936-2928392:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2946615-2947300:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2948885-2949176:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2953193-2953273:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2957160-2957285:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2959128-2959334:1:exon

bsx
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: bsx
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2962901..2986330)
location: region:2962901-2986330:-1
so has part: feature:2962901-2986330:-1:exon
subclass of: SO_0000010

100567336
type: Gene
SIO_000068: ncbigene

position:2962901:-1
position: 2962901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2986330:-1
position: 2986330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2962901-2986330:-1:exon

bsx
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: bsx
product: brain specific homeobox
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003222809.2
SIO_010081: bsx
subclass of: SO_0000673
so part of: bsx
location: complement(join(2962901..2962906,2979359..2979555,2985719..2986330))
location: region:2962901-2986330:-1
so has part: feature:2985719-2986330:-1:exon
so has part: feature:2979359-2979555:-1:exon
so has part: feature:2962901-2962906:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2985719-2986330:-1:exon

position:2985719:-1
position: 2985719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2979359-2979555:-1:exon

position:2979359:-1
position: 2979359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2979555:-1
position: 2979555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2962901-2962906:-1:exon

position:2962906:-1
position: 2962906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

bsx
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: bsx
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: brain-specific homeobox protein homolog
translation: MNLNFTSHSLSSHRGPTSFFIEDILLHKPKPLREMAPEPFHARVPLLDYGYPLMPPPALLAPHPHHPLHKPDHHHHHHHPPYFLTASGLPVPALFQPHPQSELPGKHCRRRKARTVFSDSQLSGLEKRFEVQRYLSTPERVELATALSLSETQV
SIO_010081: bsx
subclass of: SO_0000673
so part of: bsx
location: complement(join(2962901..2962906,2979359..2979555,2985719..2985980))
location: region:2962901-2985980:-1
so has part: feature:2985719-2985980:-1:exon
so has part: feature:2979359-2979555:-1:exon
so has part: feature:2962901-2962906:-1:exon

XP_003222857.1
type: Protein
SIO_000068: ncbiprotein

position:2985980:-1
position: 2985980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2985719-2985980:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2979359-2979555:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2962901-2962906:-1:exon

hspa8
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: hspa8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3019542..3029445)
location: region:3019542-3029445:-1
so has part: feature:3019542-3029445:-1:exon
subclass of: SO_0000010

100564397
type: Gene
SIO_000068: ncbigene

position:3019542:-1
position: 3019542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3029445:-1
position: 3029445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3019542-3029445:-1:exon

hspa8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: hspa8
product: heat shock protein family A (Hsp70) member 8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 104 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_003222794.2
SIO_010081: hspa8
subclass of: SO_0000673
so part of: hspa8
location: complement(join(3019542..3019958,3020997..3021229,3021807..3022005,3022275..3022477,3022841..3023396,3023557..3023709,3023796..3024001,3024902..3025111,3029337..3029445))
location: region:3019542-3029445:-1
so has part: feature:3029337-3029445:-1:exon
so has part: feature:3024902-3025111:-1:exon
so has part: feature:3023796-3024001:-1:exon
so has part: feature:3023557-3023709:-1:exon
so has part: feature:3022841-3023396:-1:exon
so has part: feature:3022275-3022477:-1:exon
so has part: feature:3021807-3022005:-1:exon
so has part: feature:3020997-3021229:-1:exon
so has part: feature:3019542-3019958:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3029337-3029445:-1:exon

position:3029337:-1
position: 3029337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3024902-3025111:-1:exon

position:3024902:-1
position: 3024902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3025111:-1
position: 3025111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3023796-3024001:-1:exon

position:3023796:-1
position: 3023796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3024001:-1
position: 3024001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3023557-3023709:-1:exon

position:3023557:-1
position: 3023557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3023709:-1
position: 3023709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3022841-3023396:-1:exon

position:3022841:-1
position: 3022841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3023396:-1
position: 3023396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3022275-3022477:-1:exon

position:3022275:-1
position: 3022275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3022477:-1
position: 3022477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3021807-3022005:-1:exon

position:3021807:-1
position: 3021807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3022005:-1
position: 3022005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3020997-3021229:-1:exon

position:3020997:-1
position: 3020997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3021229:-1
position: 3021229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3019542-3019958:-1:exon

position:3019958:-1
position: 3019958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

hspa8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: hspa8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heat shock cognate 71 kDa protein
translation: MSKGPSVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFTVINDAGRPKVQVEYKGETKSFYPEEISSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISDNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQVHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKISDDDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD
SIO_010081: hspa8
subclass of: SO_0000673
so part of: hspa8
location: complement(join(3019773..3019958,3020997..3021229,3021807..3022005,3022275..3022477,3022841..3023396,3023557..3023709,3023796..3024001,3024902..3025106))
location: region:3019773-3025106:-1
so has part: feature:3024902-3025106:-1:exon
so has part: feature:3023796-3024001:-1:exon
so has part: feature:3023557-3023709:-1:exon
so has part: feature:3022841-3023396:-1:exon
so has part: feature:3022275-3022477:-1:exon
so has part: feature:3021807-3022005:-1:exon
so has part: feature:3020997-3021229:-1:exon
so has part: feature:3019773-3019958:-1:exon

XP_003222842.1
type: Protein
SIO_000068: ncbiprotein

position:3019773:-1
position: 3019773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3025106:-1
position: 3025106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3024902-3025106:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3023796-3024001:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3023557-3023709:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3022841-3023396:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3022275-3022477:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3021807-3022005:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3020997-3021229:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3019773-3019958:-1:exon

clmp
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: clmp
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3033796..3078418)
location: region:3033796-3078418:-1
so has part: feature:3033796-3078418:-1:exon
subclass of: SO_0000010

100564595
type: Gene
SIO_000068: ncbigene

position:3033796:-1
position: 3033796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3078418:-1
position: 3078418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3033796-3078418:-1:exon

clmp
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: clmp
product: CXADR-like membrane protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_003222795.3
SIO_010081: clmp
subclass of: SO_0000673
so part of: clmp
location: complement(join(3033796..3035444,3039291..3039432,3039874..3039996,3040688..3040852,3041155..3041356,3042244..3042401,3077940..3078418))
location: region:3033796-3078418:-1
so has part: feature:3077940-3078418:-1:exon
so has part: feature:3042244-3042401:-1:exon
so has part: feature:3041155-3041356:-1:exon
so has part: feature:3040688-3040852:-1:exon
so has part: feature:3039874-3039996:-1:exon
so has part: feature:3039291-3039432:-1:exon
so has part: feature:3033796-3035444:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3077940-3078418:-1:exon

position:3077940:-1
position: 3077940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3042244-3042401:-1:exon

position:3042244:-1
position: 3042244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3042401:-1
position: 3042401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3041155-3041356:-1:exon

position:3041155:-1
position: 3041155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3041356:-1
position: 3041356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3040688-3040852:-1:exon

position:3040688:-1
position: 3040688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3040852:-1
position: 3040852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3039874-3039996:-1:exon

position:3039874:-1
position: 3039874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3039996:-1
position: 3039996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3039291-3039432:-1:exon

position:3039291:-1
position: 3039291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3039432:-1
position: 3039432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3033796-3035444:-1:exon

position:3035444:-1
position: 3035444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

clmp
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: clmp
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CXADR-like membrane protein
translation: MSALSILFLASCSAWVSQAQTEFKRVAEANVTLPCHHRLHLLGTTSLDIEWLLKDSEAEPKVVITYAGGNIYNDLIEEQKGRVSFASNFQNGDASLDISLLQPSDAGQYTCKVKNAGQYEWSHITLKVLEKPSKPKCWKEGDMSEGKEIALQCNAVSGTMPIMYMWQRIDEEGKTGSLPPMAHINLSNPAQIFMKNLTWVATGLYQCTASNEAGQENCVVEVTVQYAQNFGIIAGAVCGVMGGLALIFLVVWLTIKRKEKRKYEEEEAPNEIREDAEAPKARLVKPGSSSSGSRSSHSGSSSTRSTANSASRSQQTLSTEATPHITPTQHGHLEMDGKETEPKKTNPANVIKAEATVMMAPGQSRAFQTV
SIO_010081: clmp
subclass of: SO_0000673
so part of: clmp
location: complement(join(3035150..3035444,3039291..3039432,3039874..3039996,3040688..3040852,3041155..3041356,3042244..3042401,3077940..3077967))
location: region:3035150-3077967:-1
so has part: feature:3077940-3077967:-1:exon
so has part: feature:3042244-3042401:-1:exon
so has part: feature:3041155-3041356:-1:exon
so has part: feature:3040688-3040852:-1:exon
so has part: feature:3039874-3039996:-1:exon
so has part: feature:3039291-3039432:-1:exon
so has part: feature:3035150-3035444:-1:exon

XP_003222843.1
type: Protein
SIO_000068: ncbiprotein

position:3035150:-1
position: 3035150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3077967:-1
position: 3077967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3077940-3077967:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3042244-3042401:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3041155-3041356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3040688-3040852:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3039874-3039996:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3039291-3039432:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3035150-3035444:-1:exon

gramd1b
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: gramd1b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3141952..3389080
location: region:3141952-3389080:1
so has part: feature:3141952-3389080:1:exon
subclass of: SO_0000010

100567531
type: Gene
SIO_000068: ncbigene

position:3141952:1
position: 3141952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3389080:1
position: 3389080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3141952-3389080:1:exon

gramd1b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: gramd1b
product: GRAM domain containing 1B, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_008113750.2
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3141952..3142499,3199383..3200200,3218379..3218456,3310850..3311060,3323896..3323916,3327728..3327751,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355410,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3382767..3382778,3385216..3385323,3387011..3387128,3388935..3389080)
location: region:3141952-3389080:1
so has part: feature:3141952-3142499:1:exon
so has part: feature:3199383-3200200:1:exon
so has part: feature:3218379-3218456:1:exon
so has part: feature:3310850-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3327728-3327751:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355410:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3382767-3382778:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389080:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3141952-3142499:1:exon

position:3142499:1
position: 3142499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3199383-3200200:1:exon

position:3199383:1
position: 3199383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3200200:1
position: 3200200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3218379-3218456:1:exon

position:3218379:1
position: 3218379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3218456:1
position: 3218456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3310850-3311060:1:exon

position:3310850:1
position: 3310850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3311060:1
position: 3311060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3323896-3323916:1:exon

position:3323896:1
position: 3323896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3323916:1
position: 3323916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3327728-3327751:1:exon

position:3327728:1
position: 3327728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3327751:1
position: 3327751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3344484-3344568:1:exon

position:3344484:1
position: 3344484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3344568:1
position: 3344568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3347490-3347593:1:exon

position:3347490:1
position: 3347490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3347593:1
position: 3347593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3347732-3347827:1:exon

position:3347732:1
position: 3347732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3347827:1
position: 3347827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3348787-3348867:1:exon

position:3348787:1
position: 3348787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3348867:1
position: 3348867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3352929-3353044:1:exon

position:3352929:1
position: 3352929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3353044:1
position: 3353044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3354153-3354312:1:exon

position:3354153:1
position: 3354153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3354312:1
position: 3354312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3355203-3355410:1:exon

position:3355203:1
position: 3355203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3355410:1
position: 3355410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3358022-3358165:1:exon

position:3358022:1
position: 3358022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3358165:1
position: 3358165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3360623-3360741:1:exon

position:3360623:1
position: 3360623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3360741:1
position: 3360741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3360886-3361028:1:exon

position:3360886:1
position: 3360886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3361028:1
position: 3361028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:3361969-3362072:1:exon

position:3361969:1
position: 3361969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3362072:1
position: 3362072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:3364277-3364480:1:exon

position:3364277:1
position: 3364277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3364480:1
position: 3364480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:3366214-3366304:1:exon

position:3366214:1
position: 3366214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3366304:1
position: 3366304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:3382767-3382778:1:exon

position:3382767:1
position: 3382767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3382778:1
position: 3382778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:3385216-3385323:1:exon

position:3385216:1
position: 3385216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3385323:1
position: 3385323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:3387011-3387128:1:exon

position:3387011:1
position: 3387011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3387128:1
position: 3387128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:3388935-3389080:1:exon

position:3388935:1
position: 3388935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

gramd1b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: gramd1b
product: GRAM domain containing 1B, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_008113751.2
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3197142..3197539,3197678..3200200,3218379..3218456,3310850..3311060,3323896..3323916,3327728..3327751,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355410,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3385216..3385323,3387011..3387128,3388935..3389080)
location: region:3197142-3389080:1
so has part: feature:3197142-3197539:1:exon
so has part: feature:3197678-3200200:1:exon
so has part: feature:3218379-3218456:1:exon
so has part: feature:3310850-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3327728-3327751:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355410:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389080:1:exon

position:3197142:1
position: 3197142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3197142-3197539:1:exon

position:3197539:1
position: 3197539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3197678-3200200:1:exon

position:3197678:1
position: 3197678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3218379-3218456:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3310850-3311060:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3323896-3323916:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3327728-3327751:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3344484-3344568:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3347490-3347593:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3347732-3347827:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3348787-3348867:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3352929-3353044:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3354153-3354312:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3355203-3355410:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3358022-3358165:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3360623-3360741:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3360886-3361028:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3361969-3362072:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3364277-3364480:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3366214-3366304:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3385216-3385323:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3387011-3387128:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3388935-3389080:1:exon

gramd1b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: gramd1b
product: GRAM domain containing 1B, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_008113753.2
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3197143..3197539,3197678..3200200,3218379..3218456,3310850..3311060,3323896..3323916,3327728..3327751,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355389,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3382767..3382778,3385216..3385323,3387011..3387128,3388935..3389080)
location: region:3197143-3389080:1
so has part: feature:3197143-3197539:1:exon
so has part: feature:3197678-3200200:1:exon
so has part: feature:3218379-3218456:1:exon
so has part: feature:3310850-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3327728-3327751:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355389:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3382767-3382778:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389080:1:exon

position:3197143:1
position: 3197143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3197143-3197539:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3197678-3200200:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3218379-3218456:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3310850-3311060:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3323896-3323916:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3327728-3327751:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3344484-3344568:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3347490-3347593:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3347732-3347827:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3348787-3348867:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3352929-3353044:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3354153-3354312:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3355203-3355389:1:exon

position:3355389:1
position: 3355389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3358022-3358165:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3360623-3360741:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3360886-3361028:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3361969-3362072:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3364277-3364480:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3366214-3366304:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3382767-3382778:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3385216-3385323:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3387011-3387128:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3388935-3389080:1:exon

gramd1b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: gramd1b
product: GRAM domain containing 1B, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_003222810.3
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3197143..3197539,3197678..3200200,3218379..3218456,3310850..3311060,3323896..3323916,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355389,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3385216..3385323,3387011..3387128,3388935..3389080)
location: region:3197143-3389080:1
so has part: feature:3197143-3197539:1:exon
so has part: feature:3197678-3200200:1:exon
so has part: feature:3218379-3218456:1:exon
so has part: feature:3310850-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355389:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389080:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3197143-3197539:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3197678-3200200:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3218379-3218456:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3310850-3311060:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3323896-3323916:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3344484-3344568:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3347490-3347593:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3347732-3347827:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3348787-3348867:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3352929-3353044:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3354153-3354312:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3355203-3355389:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3358022-3358165:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3360623-3360741:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3360886-3361028:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3361969-3362072:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3364277-3364480:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3366214-3366304:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3385216-3385323:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3387011-3387128:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3388935-3389080:1:exon

gramd1b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: gramd1b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GRAM domain-containing protein 1B isoform X1
translation: MKVGGEVTQELVPVAKMTETLQLPALQVPEQQEVECARVWSSSSTPTLRRRRFRMRRTRNIQEQNLEAAPPSNKDFLQLPSIEITPSSDEDTPWSNCSTPSASPRRKRFLLRKWLNVREKKEYSESSSQQSSQQSSHDDDTSRFLSPRMRDGSTASNSNRSTPACSPILRKRSRSPTPQDPQGDTMVEKGSDHSSDKSPSTPEQGVQRSCSSQSGRSGAKNSKKSQSWYNHERQHIRRVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDTEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDEDYVPPDEDFNTMGYCEEIQVEDNEVNDSSSKSSVDVKPETSPQLPKKSITNSSTLTPTGSNEVPIPYEGIVPEEEEIMDLPTEKDLTIANLIADKIEIIAPVNSPSLDFNDNEDIPTELSDSSETHDEGAWPESTGEVQAFYEDLNGRQYVNEVFNFSVDKLYDLLFTDSQFLRDFMEQRRFSDVIFHPWKKEETGNQSRVILYTITLTNPLAPKTATVTETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKCRLRVSTELRYRKQPWGLVKSFIEKNFWSGLDDYFRHLESELTKTESTYLAELHRQSPKEKVVKQSTVRRRKRPHTHLRGPHLEEVLSPVTTPTDEEAVSRIKRVAGSTQTRHIPEESPGSFHLQNVSKLLLVISCVICFSLVLLVILNMMLFYKLWMLEYTTQTLTAWQGLRLQERLPQSQTEWAQLLESQQKYHDTELQKWREIIKSSVILLDQMKDSLVNLQNGIGSRDYQSEPEEKRKRFY
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3199821..3200200,3218379..3218456,3310850..3311060,3323896..3323916,3327728..3327751,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355410,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3382767..3382778,3385216..3385323,3387011..3387128,3388935..3389024)
location: region:3199821-3389024:1
so has part: feature:3199821-3200200:1:exon
so has part: feature:3218379-3218456:1:exon
so has part: feature:3310850-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3327728-3327751:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355410:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3382767-3382778:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389024:1:exon

XP_008111957.1
type: Protein
SIO_000068: ncbiprotein

position:3199821:1
position: 3199821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3389024:1
position: 3389024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3199821-3200200:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3218379-3218456:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3310850-3311060:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3323896-3323916:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3327728-3327751:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3344484-3344568:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3347490-3347593:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3347732-3347827:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3348787-3348867:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3352929-3353044:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3354153-3354312:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3355203-3355410:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3358022-3358165:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3360623-3360741:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3360886-3361028:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3361969-3362072:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3364277-3364480:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3366214-3366304:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3382767-3382778:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3385216-3385323:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3387011-3387128:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3388935-3389024:1:exon

gramd1b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: gramd1b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GRAM domain-containing protein 1B isoform X2
translation: MKVGGEVTQELVPVAKMTETLQLPALQVPEQQEVECARVWSSSSTPTLRRRRFRMRRTRNIQEQNLEAAPPSNKDFLQLPSIEITPSSDEDTPWSNCSTPSASPRRKRFLLRKWLNVREKKEYSESSSQQSSQQSSHDDDTSRFLSPRMRDGSTASNSNRSTPACSPILRKRSRSPTPQDPQGDTMVEKGSDHSSDKSPSTPEQGVQRSCSSQSGRSGAKNSKKSQSWYNHERQHIRRVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDTEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDEDYVPPDEDFNTMGYCEEIQVEDNEVNDSSSKSSVDVKPETSPQLPKKSITNSSTLTPTGSNEVPIPYEGIVPEEEEIMDLPTEKDLTIANLIADKIEIIAPVNSPSLDFNDNEDIPTELSDSSETHDEGAWPESTGEVQAFYEDLNGRQYVNEVFNFSVDKLYDLLFTDSQFLRDFMEQRRFSDVIFHPWKKEETGNQSRVILYTITLTNPLAPKTATVTETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKCRLRVSTELRYRKQPWGLVKSFIEKNFWSGLDDYFRHLESELTKTESTYLAELHRQSPKEKVVKQSTVRRRKRPHTHLRGPHLEEVLSPVTTPTDEEAVSRIKRVAGSTQTRHIPEESPGSFHLQNVSKLLLVISCVLVLLVILNMMLFYKLWMLEYTTQTLTAWQGLRLQERLPQSQTEWAQLLESQQKYHDTELQKWREIIKSSVILLDQMKDSLVNLQNGIGSRDYQSEPEEKRKRFY
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3199821..3200200,3218379..3218456,3310850..3311060,3323896..3323916,3327728..3327751,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355410,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3385216..3385323,3387011..3387128,3388935..3389024)
location: region:3199821-3389024:1
so has part: feature:3199821-3200200:1:exon
so has part: feature:3218379-3218456:1:exon
so has part: feature:3310850-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3327728-3327751:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355410:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389024:1:exon

XP_008111958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3199821-3200200:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3218379-3218456:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3310850-3311060:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3323896-3323916:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3327728-3327751:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3344484-3344568:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3347490-3347593:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3347732-3347827:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3348787-3348867:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3352929-3353044:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3354153-3354312:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3355203-3355410:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3358022-3358165:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3360623-3360741:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3360886-3361028:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3361969-3362072:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3364277-3364480:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3366214-3366304:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3385216-3385323:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3387011-3387128:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3388935-3389024:1:exon

gramd1b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: gramd1b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GRAM domain-containing protein 1B isoform X3
translation: MKVGGEVTQELVPVAKMTETLQLPALQVPEQQEVECARVWSSSSTPTLRRRRFRMRRTRNIQEQNLEAAPPSNKDFLQLPSIEITPSSDEDTPWSNCSTPSASPRRKRFLLRKWLNVREKKEYSESSSQQSSQQSSHDDDTSRFLSPRMRDGSTASNSNRSTPACSPILRKRSRSPTPQDPQGDTMVEKGSDHSSDKSPSTPEQGVQRSCSSQSGRSGAKNSKKSQSWYNHERQHIRRVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDTEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDEDYVPPDEDFNTMGYCEEIQVEDNEVNDSSSKSSVDVKPETSPQLPKKSITNSSTLTPTGSNEVPIPYEGIVPEEEEIMDLPTEKDLTIANLIADKIEIIAPVNSPSLDFNDNEDIPTELSDSSETHDEGEVQAFYEDLNGRQYVNEVFNFSVDKLYDLLFTDSQFLRDFMEQRRFSDVIFHPWKKEETGNQSRVILYTITLTNPLAPKTATVTETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKCRLRVSTELRYRKQPWGLVKSFIEKNFWSGLDDYFRHLESELTKTESTYLAELHRQSPKEKVVKQSTVRRRKRPHTHLRGPHLEEVLSPVTTPTDEEAVSRIKRVAGSTQTRHIPEESPGSFHLQNVSKLLLVISCVICFSLVLLVILNMMLFYKLWMLEYTTQTLTAWQGLRLQERLPQSQTEWAQLLESQQKYHDTELQKWREIIKSSVILLDQMKDSLVNLQNGIGSRDYQSEPEEKRKRFY
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3199821..3200200,3218379..3218456,3310850..3311060,3323896..3323916,3327728..3327751,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355389,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3382767..3382778,3385216..3385323,3387011..3387128,3388935..3389024)
location: region:3199821-3389024:1
so has part: feature:3199821-3200200:1:exon
so has part: feature:3218379-3218456:1:exon
so has part: feature:3310850-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3327728-3327751:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355389:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3382767-3382778:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389024:1:exon

XP_008111960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3199821-3200200:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3218379-3218456:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3310850-3311060:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3323896-3323916:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3327728-3327751:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3344484-3344568:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3347490-3347593:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3347732-3347827:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3348787-3348867:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3352929-3353044:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3354153-3354312:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3355203-3355389:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3358022-3358165:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3360623-3360741:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3360886-3361028:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3361969-3362072:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3364277-3364480:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3366214-3366304:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3382767-3382778:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3385216-3385323:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3387011-3387128:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3388935-3389024:1:exon

gramd1b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: gramd1b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GRAM domain-containing protein 1B isoform X4
translation: MKVGGEVTQELVPVAKMTETLQLPALQVPEQQEVECARVWSSSSTPTLRRRRFRMRRTRNIQEQNLEAAPPSNKDFLQLPSIEITPSSDEDTPWSNCSTPSASPRRKRFLLRKWLNVREKKEYSESSSQQSSQQSSHDDDTSRFLSPRMRDGSTASNSNRSTPACSPILRKRSRSPTPQDPQGDTMVEKGSDHSSDKSPSTPEQGVQRSCSSQSGRSGAKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDTEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDEDYVPPDEDFNTMGYCEEIQVEDNEVNDSSSKSSVDVKPETSPQLPKKSITNSSTLTPTGSNEVPIPYEGIVPEEEEIMDLPTEKDLTIANLIADKIEIIAPVNSPSLDFNDNEDIPTELSDSSETHDEGEVQAFYEDLNGRQYVNEVFNFSVDKLYDLLFTDSQFLRDFMEQRRFSDVIFHPWKKEETGNQSRVILYTITLTNPLAPKTATVTETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKCRLRVSTELRYRKQPWGLVKSFIEKNFWSGLDDYFRHLESELTKTESTYLAELHRQSPKEKVVKQSTVRRRKRPHTHLRGPHLEEVLSPVTTPTDEEAVSRIKRVAGSTQTRHIPEESPGSFHLQNVSKLLLVISCVLVLLVILNMMLFYKLWMLEYTTQTLTAWQGLRLQERLPQSQTEWAQLLESQQKYHDTELQKWREIIKSSVILLDQMKDSLVNLQNGIGSRDYQSEPEEKRKRFY
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3199821..3200200,3218379..3218456,3310850..3311060,3323896..3323916,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355389,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3385216..3385323,3387011..3387128,3388935..3389024)
location: region:3199821-3389024:1
so has part: feature:3199821-3200200:1:exon
so has part: feature:3218379-3218456:1:exon
so has part: feature:3310850-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355389:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389024:1:exon

XP_003222858.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3199821-3200200:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3218379-3218456:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3310850-3311060:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3323896-3323916:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3344484-3344568:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3347490-3347593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3347732-3347827:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3348787-3348867:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3352929-3353044:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3354153-3354312:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3355203-3355389:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3358022-3358165:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3360623-3360741:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3360886-3361028:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3361969-3362072:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3364277-3364480:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3366214-3366304:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3385216-3385323:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3387011-3387128:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3388935-3389024:1:exon

gramd1b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: gramd1b
product: GRAM domain containing 1B, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_008113759.2
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3251064..3251096,3310850..3311060,3323896..3323916,3327728..3327751,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355410,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3382767..3382778,3385216..3385323,3387011..3387128,3388935..3389080)
location: region:3251064-3389080:1
so has part: feature:3251064-3251096:1:exon
so has part: feature:3310850-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3327728-3327751:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355410:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3382767-3382778:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389080:1:exon

position:3251064:1
position: 3251064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3251064-3251096:1:exon

position:3251096:1
position: 3251096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3310850-3311060:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3323896-3323916:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3327728-3327751:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3344484-3344568:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3347490-3347593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3347732-3347827:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3348787-3348867:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3352929-3353044:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3354153-3354312:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3355203-3355410:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3358022-3358165:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3360623-3360741:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3360886-3361028:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3361969-3362072:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3364277-3364480:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3366214-3366304:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3382767-3382778:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3385216-3385323:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3387011-3387128:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3388935-3389080:1:exon

gramd1b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: gramd1b
product: GRAM domain containing 1B, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_008113756.1
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3256280..3256605,3310850..3311060,3323896..3323916,3327728..3327751,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355410,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3382767..3382778,3385216..3385323,3387011..3387128,3388935..3389080)
location: region:3256280-3389080:1
so has part: feature:3256280-3256605:1:exon
so has part: feature:3310850-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3327728-3327751:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355410:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3382767-3382778:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389080:1:exon

position:3256280:1
position: 3256280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3256280-3256605:1:exon

position:3256605:1
position: 3256605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3310850-3311060:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3323896-3323916:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3327728-3327751:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3344484-3344568:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3347490-3347593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3347732-3347827:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3348787-3348867:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3352929-3353044:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3354153-3354312:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3355203-3355410:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3358022-3358165:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3360623-3360741:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3360886-3361028:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3361969-3362072:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3364277-3364480:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3366214-3366304:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3382767-3382778:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3385216-3385323:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3387011-3387128:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3388935-3389080:1:exon

gramd1b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: gramd1b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GRAM domain-containing protein 1B isoform X5
translation: MISASLPEPRSCRGGGGASACWAGAELPPSSSSSSSSSSSPGRLQASFHGGTVPGLLHYVLGAAPAPTAGSQGHGHRLLVTVLMKGFKLACTASNSNRSTPACSPILRKRSRSPTPQDPQGDTMVEKGSDHSSDKSPSTPEQGVQRSCSSQSGRSGAKNSKKSQSWYNHERQHIRRVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDTEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDEDYVPPDEDFNTMGYCEEIQVEDNEVNDSSSKSSVDVKPETSPQLPKKSITNSSTLTPTGSNEVPIPYEGIVPEEEEIMDLPTEKDLTIANLIADKIEIIAPVNSPSLDFNDNEDIPTELSDSSETHDEGAWPESTGEVQAFYEDLNGRQYVNEVFNFSVDKLYDLLFTDSQFLRDFMEQRRFSDVIFHPWKKEETGNQSRVILYTITLTNPLAPKTATVTETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKCRLRVSTELRYRKQPWGLVKSFIEKNFWSGLDDYFRHLESELTKTESTYLAELHRQSPKEKVVKQSTVRRRKRPHTHLRGPHLEEVLSPVTTPTDEEAVSRIKRVAGSTQTRHIPEESPGSFHLQNVSKLLLVISCVICFSLVLLVILNMMLFYKLWMLEYTTQTLTAWQGLRLQERLPQSQTEWAQLLESQQKYHDTELQKWREIIKSSVILLDQMKDSLVNLQNGIGSRDYQSEPEEKRKRFY
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3256334..3256605,3310850..3311060,3323896..3323916,3327728..3327751,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355410,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3382767..3382778,3385216..3385323,3387011..3387128,3388935..3389024)
location: region:3256334-3389024:1
so has part: feature:3256334-3256605:1:exon
so has part: feature:3310850-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3327728-3327751:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355410:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3382767-3382778:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389024:1:exon

XP_008111963.1
type: Protein
SIO_000068: ncbiprotein

position:3256334:1
position: 3256334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3256334-3256605:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3310850-3311060:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3323896-3323916:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3327728-3327751:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3344484-3344568:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3347490-3347593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3347732-3347827:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3348787-3348867:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3352929-3353044:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3354153-3354312:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3355203-3355410:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3358022-3358165:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3360623-3360741:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3360886-3361028:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3361969-3362072:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3364277-3364480:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3366214-3366304:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3382767-3382778:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3385216-3385323:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3387011-3387128:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3388935-3389024:1:exon

gramd1b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: gramd1b
product: GRAM domain containing 1B, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_008113758.2
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3295813..3296270,3310850..3311060,3323896..3323916,3327728..3327751,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355410,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3382767..3382778,3385216..3385323,3387011..3387128,3388935..3389080)
location: region:3295813-3389080:1
so has part: feature:3295813-3296270:1:exon
so has part: feature:3310850-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3327728-3327751:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355410:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3382767-3382778:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389080:1:exon

position:3295813:1
position: 3295813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3295813-3296270:1:exon

position:3296270:1
position: 3296270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3310850-3311060:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3323896-3323916:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3327728-3327751:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3344484-3344568:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3347490-3347593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3347732-3347827:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3348787-3348867:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3352929-3353044:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3354153-3354312:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3355203-3355410:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3358022-3358165:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3360623-3360741:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3360886-3361028:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3361969-3362072:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3364277-3364480:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3366214-3366304:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3382767-3382778:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3385216-3385323:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3387011-3387128:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3388935-3389080:1:exon

gramd1b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: gramd1b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GRAM domain-containing protein 1B isoform X6
translation: MATNTASNSNRSTPACSPILRKRSRSPTPQDPQGDTMVEKGSDHSSDKSPSTPEQGVQRSCSSQSGRSGAKNSKKSQSWYNHERQHIRRVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDTEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDEDYVPPDEDFNTMGYCEEIQVEDNEVNDSSSKSSVDVKPETSPQLPKKSITNSSTLTPTGSNEVPIPYEGIVPEEEEIMDLPTEKDLTIANLIADKIEIIAPVNSPSLDFNDNEDIPTELSDSSETHDEGAWPESTGEVQAFYEDLNGRQYVNEVFNFSVDKLYDLLFTDSQFLRDFMEQRRFSDVIFHPWKKEETGNQSRVILYTITLTNPLAPKTATVTETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKCRLRVSTELRYRKQPWGLVKSFIEKNFWSGLDDYFRHLESELTKTESTYLAELHRQSPKEKVVKQSTVRRRKRPHTHLRGPHLEEVLSPVTTPTDEEAVSRIKRVAGSTQTRHIPEESPGSFHLQNVSKLLLVISCVICFSLVLLVILNMMLFYKLWMLEYTTQTLTAWQGLRLQERLPQSQTEWAQLLESQQKYHDTELQKWREIIKSSVILLDQMKDSLVNLQNGIGSRDYQSEPEEKRKRFY
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3296260..3296270,3310850..3311060,3323896..3323916,3327728..3327751,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355410,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3382767..3382778,3385216..3385323,3387011..3387128,3388935..3389024)
location: region:3296260-3389024:1
so has part: feature:3296260-3296270:1:exon
so has part: feature:3310850-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3327728-3327751:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355410:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3382767-3382778:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389024:1:exon

XP_008111965.1
type: Protein
SIO_000068: ncbiprotein

position:3296260:1
position: 3296260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3296260-3296270:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3310850-3311060:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3323896-3323916:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3327728-3327751:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3344484-3344568:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3347490-3347593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3347732-3347827:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3348787-3348867:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3352929-3353044:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3354153-3354312:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3355203-3355410:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3358022-3358165:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3360623-3360741:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3360886-3361028:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3361969-3362072:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3364277-3364480:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3366214-3366304:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3382767-3382778:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3385216-3385323:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3387011-3387128:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3388935-3389024:1:exon

gramd1b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: gramd1b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GRAM domain-containing protein 1B isoform X7
translation: MVEKGSDHSSDKSPSTPEQGVQRSCSSQSGRSGAKNSKKSQSWYNHERQHIRRVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDTEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDEDYVPPDEDFNTMGYCEEIQVEDNEVNDSSSKSSVDVKPETSPQLPKKSITNSSTLTPTGSNEVPIPYEGIVPEEEEIMDLPTEKDLTIANLIADKIEIIAPVNSPSLDFNDNEDIPTELSDSSETHDEGAWPESTGEVQAFYEDLNGRQYVNEVFNFSVDKLYDLLFTDSQFLRDFMEQRRFSDVIFHPWKKEETGNQSRVILYTITLTNPLAPKTATVTETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKCRLRVSTELRYRKQPWGLVKSFIEKNFWSGLDDYFRHLESELTKTESTYLAELHRQSPKEKVVKQSTVRRRKRPHTHLRGPHLEEVLSPVTTPTDEEAVSRIKRVAGSTQTRHIPEESPGSFHLQNVSKLLLVISCVICFSLVLLVILNMMLFYKLWMLEYTTQTLTAWQGLRLQERLPQSQTEWAQLLESQQKYHDTELQKWREIIKSSVILLDQMKDSLVNLQNGIGSRDYQSEPEEKRKRFY
SIO_010081: gramd1b
subclass of: SO_0000673
so part of: gramd1b
location: join(3310947..3311060,3323896..3323916,3327728..3327751,3344484..3344568,3347490..3347593,3347732..3347827,3348787..3348867,3352929..3353044,3354153..3354312,3355203..3355410,3358022..3358165,3360623..3360741,3360886..3361028,3361969..3362072,3364277..3364480,3366214..3366304,3382767..3382778,3385216..3385323,3387011..3387128,3388935..3389024)
location: region:3310947-3389024:1
so has part: feature:3310947-3311060:1:exon
so has part: feature:3323896-3323916:1:exon
so has part: feature:3327728-3327751:1:exon
so has part: feature:3344484-3344568:1:exon
so has part: feature:3347490-3347593:1:exon
so has part: feature:3347732-3347827:1:exon
so has part: feature:3348787-3348867:1:exon
so has part: feature:3352929-3353044:1:exon
so has part: feature:3354153-3354312:1:exon
so has part: feature:3355203-3355410:1:exon
so has part: feature:3358022-3358165:1:exon
so has part: feature:3360623-3360741:1:exon
so has part: feature:3360886-3361028:1:exon
so has part: feature:3361969-3362072:1:exon
so has part: feature:3364277-3364480:1:exon
so has part: feature:3366214-3366304:1:exon
so has part: feature:3382767-3382778:1:exon
so has part: feature:3385216-3385323:1:exon
so has part: feature:3387011-3387128:1:exon
so has part: feature:3388935-3389024:1:exon

XP_008111966.1
type: Protein
SIO_000068: ncbiprotein

position:3310947:1
position: 3310947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3310947-3311060:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3323896-3323916:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3327728-3327751:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3344484-3344568:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3347490-3347593:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3347732-3347827:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3348787-3348867:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3352929-3353044:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3354153-3354312:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3355203-3355410:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3358022-3358165:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3360623-3360741:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3360886-3361028:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3361969-3362072:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3364277-3364480:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3366214-3366304:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3382767-3382778:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3385216-3385323:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3387011-3387128:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3388935-3389024:1:exon

scn3b
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: scn3b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3395554..3426315)
location: region:3395554-3426315:-1
so has part: feature:3395554-3426315:-1:exon
subclass of: SO_0000010

100563612
type: Gene
SIO_000068: ncbigene

position:3395554:-1
position: 3395554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3426315:-1
position: 3426315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3395554-3426315:-1:exon

scn3b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: scn3b
product: sodium voltage-gated channel beta subunit 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_008113760.2
SIO_010081: scn3b
subclass of: SO_0000673
so part of: scn3b
location: complement(join(3395554..3396682,3398805..3398905,3402040..3402178,3404700..3404925,3406942..3407105,3426078..3426315))
location: region:3395554-3426315:-1
so has part: feature:3426078-3426315:-1:exon
so has part: feature:3406942-3407105:-1:exon
so has part: feature:3404700-3404925:-1:exon
so has part: feature:3402040-3402178:-1:exon
so has part: feature:3398805-3398905:-1:exon
so has part: feature:3395554-3396682:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3426078-3426315:-1:exon

position:3426078:-1
position: 3426078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3406942-3407105:-1:exon

position:3406942:-1
position: 3406942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3407105:-1
position: 3407105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3404700-3404925:-1:exon

position:3404700:-1
position: 3404700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3404925:-1
position: 3404925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3402040-3402178:-1:exon

position:3402040:-1
position: 3402040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3402178:-1
position: 3402178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3398805-3398905:-1:exon

position:3398805:-1
position: 3398805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3398905:-1
position: 3398905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3395554-3396682:-1:exon

position:3396682:-1
position: 3396682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

scn3b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: scn3b
product: sodium voltage-gated channel beta subunit 3, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_003222790.3
SIO_010081: scn3b
subclass of: SO_0000673
so part of: scn3b
location: complement(join(3395554..3396682,3398805..3398905,3402040..3402178,3404700..3404925,3406942..3407105,3416817..3416878,3426078..3426315))
location: region:3395554-3426315:-1
so has part: feature:3426078-3426315:-1:exon
so has part: feature:3416817-3416878:-1:exon
so has part: feature:3406942-3407105:-1:exon
so has part: feature:3404700-3404925:-1:exon
so has part: feature:3402040-3402178:-1:exon
so has part: feature:3398805-3398905:-1:exon
so has part: feature:3395554-3396682:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3426078-3426315:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3416817-3416878:-1:exon

position:3416817:-1
position: 3416817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3416878:-1
position: 3416878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3406942-3407105:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3404700-3404925:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3402040-3402178:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3398805-3398905:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3395554-3396682:-1:exon

scn3b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: scn3b
product: sodium voltage-gated channel beta subunit 3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_008113762.2
SIO_010081: scn3b
subclass of: SO_0000673
so part of: scn3b
location: complement(join(3395554..3396682,3398805..3398905,3402040..3402178,3404700..3404925,3406942..3407105,3416817..3416953,3426078..3426315))
location: region:3395554-3426315:-1
so has part: feature:3426078-3426315:-1:exon
so has part: feature:3416817-3416953:-1:exon
so has part: feature:3406942-3407105:-1:exon
so has part: feature:3404700-3404925:-1:exon
so has part: feature:3402040-3402178:-1:exon
so has part: feature:3398805-3398905:-1:exon
so has part: feature:3395554-3396682:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3426078-3426315:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3416817-3416953:-1:exon

position:3416953:-1
position: 3416953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3406942-3407105:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3404700-3404925:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3402040-3402178:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3398805-3398905:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3395554-3396682:-1:exon

scn3b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: scn3b
product: sodium voltage-gated channel beta subunit 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_008113761.2
SIO_010081: scn3b
subclass of: SO_0000673
so part of: scn3b
location: complement(join(3395554..3396682,3398805..3398905,3402040..3402178,3404700..3404925,3406942..3407105,3416817..3417324))
location: region:3395554-3417324:-1
so has part: feature:3416817-3417324:-1:exon
so has part: feature:3406942-3407105:-1:exon
so has part: feature:3404700-3404925:-1:exon
so has part: feature:3402040-3402178:-1:exon
so has part: feature:3398805-3398905:-1:exon
so has part: feature:3395554-3396682:-1:exon

position:3417324:-1
position: 3417324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3416817-3417324:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3406942-3407105:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3404700-3404925:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3402040-3402178:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3398805-3398905:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3395554-3396682:-1:exon

scn3b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: scn3b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sodium channel subunit beta-3 isoform X2
translation: MSHRDNLRPQQRKGRGRLLCLLVVSVCSAVCVEVPSEKQAVQGSRMKLMCISCMKREEVSANTVVKWFYKAEGGQDIPIYEYRNEKRELDSRFRGRLQWNGSADMQDVSISVLNVSLNDSGIYTCNITREFNFEGHRPLYTRTTLIHLTVLEDAGDDITSIVSEVMMYILLIFLTLWLLVEMVYCYRKVSKAEEAAQENATDYLAIPSENKENCAVPVEE
SIO_010081: scn3b
subclass of: SO_0000673
so part of: scn3b
location: complement(join(3398842..3398905,3402040..3402178,3404700..3404925,3406942..3407105,3426078..3426147))
location: region:3398842-3426147:-1
so has part: feature:3426078-3426147:-1:exon
so has part: feature:3406942-3407105:-1:exon
so has part: feature:3404700-3404925:-1:exon
so has part: feature:3402040-3402178:-1:exon
so has part: feature:3398842-3398905:-1:exon

XP_008111967.1
type: Protein
SIO_000068: ncbiprotein

position:3398842:-1
position: 3398842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3426147:-1
position: 3426147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3426078-3426147:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3406942-3407105:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3404700-3404925:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3402040-3402178:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3398842-3398905:-1:exon

scn3b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: scn3b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sodium channel subunit beta-3 isoform X1
translation: MGGVSCFCQASSAHAWLGRTVPSPAFLLLLLLLLLLLLLLARVPESHRPSSPLLRSRDASFLPPERLGRVGRAVKSGAGGARLPEKRCPTQGLSRTALSVVLNLAACPAQPPPLSPFSSLPPDPIERKASSWEYSLDISSSIHRPTMAPLTKVAYASSLLAVLWVSVCSAVCVEVPSEKQAVQGSRMKLMCISCMKREEVSANTVVKWFYKAEGGQDIPIYEYRNEKRELDSRFRGRLQWNGSADMQDVSISVLNVSLNDSGIYTCNITREFNFEGHRPLYTRTTLIHLTVLEDAGDDITSIVSEVMMYILLIFLTLWLLVEMVYCYRKVSKAEEAAQENATDYLAIPSENKENCAVPVEE
SIO_010081: scn3b
subclass of: SO_0000673
so part of: scn3b
location: complement(join(3398842..3398905,3402040..3402178,3404700..3404925,3406942..3407105,3416817..3417309))
location: region:3398842-3417309:-1
so has part: feature:3416817-3417309:-1:exon
so has part: feature:3406942-3407105:-1:exon
so has part: feature:3404700-3404925:-1:exon
so has part: feature:3402040-3402178:-1:exon
so has part: feature:3398842-3398905:-1:exon

XP_008111968.2
type: Protein
SIO_000068: ncbiprotein

position:3417309:-1
position: 3417309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3416817-3417309:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3406942-3407105:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3404700-3404925:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3402040-3402178:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3398842-3398905:-1:exon

scn3b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: scn3b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sodium channel subunit beta-3 isoform X3
translation: MAPLTKVAYASSLLAVLWVSVCSAVCVEVPSEKQAVQGSRMKLMCISCMKREEVSANTVVKWFYKAEGGQDIPIYEYRNEKRELDSRFRGRLQWNGSADMQDVSISVLNVSLNDSGIYTCNITREFNFEGHRPLYTRTTLIHLTVLEDAGDDITSIVSEVMMYILLIFLTLWLLVEMVYCYRKVSKAEEAAQENATDYLAIPSENKENCAVPVEE
SIO_010081: scn3b
subclass of: SO_0000673
so part of: scn3b
location: complement(join(3398842..3398905,3402040..3402178,3404700..3404925,3406942..3407105,3416817..3416871))
location: region:3398842-3416871:-1
so has part: feature:3416817-3416871:-1:exon
so has part: feature:3406942-3407105:-1:exon
so has part: feature:3404700-3404925:-1:exon
so has part: feature:3402040-3402178:-1:exon
so has part: feature:3398842-3398905:-1:exon

XP_003222838.1
type: Protein
SIO_000068: ncbiprotein

position:3416871:-1
position: 3416871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3416817-3416871:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3406942-3407105:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3404700-3404925:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3402040-3402178:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3398842-3398905:-1:exon

scn3b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: scn3b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sodium channel subunit beta-3 isoform X3
translation: MAPLTKVAYASSLLAVLWVSVCSAVCVEVPSEKQAVQGSRMKLMCISCMKREEVSANTVVKWFYKAEGGQDIPIYEYRNEKRELDSRFRGRLQWNGSADMQDVSISVLNVSLNDSGIYTCNITREFNFEGHRPLYTRTTLIHLTVLEDAGDDITSIVSEVMMYILLIFLTLWLLVEMVYCYRKVSKAEEAAQENATDYLAIPSENKENCAVPVEE
SIO_010081: scn3b
subclass of: SO_0000673
so part of: scn3b
location: complement(join(3398842..3398905,3402040..3402178,3404700..3404925,3406942..3407105,3416817..3416871))
location: region:3398842-3416871:-1
so has part: feature:3416817-3416871:-1:exon
so has part: feature:3406942-3407105:-1:exon
so has part: feature:3404700-3404925:-1:exon
so has part: feature:3402040-3402178:-1:exon
so has part: feature:3398842-3398905:-1:exon

XP_008111969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3416817-3416871:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3406942-3407105:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3404700-3404925:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3402040-3402178:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3398842-3398905:-1:exon

LOC100563809
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: LOC100563809
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3465796..3479275
location: region:3465796-3479275:1
so has part: feature:3465796-3479275:1:exon
subclass of: SO_0000010

100563809
type: Gene
SIO_000068: ncbigene

position:3465796:1
position: 3465796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3479275:1
position: 3479275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3465796-3479275:1:exon

LOC100563809
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: LOC100563809
product: potassium-transporting ATPase alpha chain 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_008113768.2
SIO_010081: LOC100563809
subclass of: SO_0000673
so part of: LOC100563809
location: join(3465796..3466107,3474383..3474526,3476983..3477042,3478303..3478506,3478967..3479275)
location: region:3465796-3479275:1
so has part: feature:3465796-3466107:1:exon
so has part: feature:3474383-3474526:1:exon
so has part: feature:3476983-3477042:1:exon
so has part: feature:3478303-3478506:1:exon
so has part: feature:3478967-3479275:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3465796-3466107:1:exon

position:3466107:1
position: 3466107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3474383-3474526:1:exon

position:3474383:1
position: 3474383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3474526:1
position: 3474526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3476983-3477042:1:exon

position:3476983:1
position: 3476983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3477042:1
position: 3477042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3478303-3478506:1:exon

position:3478303:1
position: 3478303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3478506:1
position: 3478506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3478967-3479275:1:exon

position:3478967:1
position: 3478967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100563809
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: LOC100563809
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: potassium-transporting ATPase alpha chain 2
translation: MGKKKADIYSVEINGTNDAEGIGKEDEKEKHKSKKDKKKSKEEDLKKELDLDDHKLSIQELEEKYGTSIIKGLTSSRAAEILARDGPNSLTPPKSTPEIIKFLKQMVGGFSILLWVGAILCWIAFGIQYGQGVSSAFDNLYLGVVLALVVILTGMFAYYQESKSTNIMAGFSKMIPQVSVQYQ
SIO_010081: LOC100563809
subclass of: SO_0000673
so part of: LOC100563809
location: join(3466099..3466107,3474383..3474526,3476983..3477042,3478303..3478506,3478967..3479101)
location: region:3466099-3479101:1
so has part: feature:3466099-3466107:1:exon
so has part: feature:3474383-3474526:1:exon
so has part: feature:3476983-3477042:1:exon
so has part: feature:3478303-3478506:1:exon
so has part: feature:3478967-3479101:1:exon

XP_008111975.1
type: Protein
SIO_000068: ncbiprotein

position:3466099:1
position: 3466099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3479101:1
position: 3479101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3466099-3466107:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3474383-3474526:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3476983-3477042:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3478303-3478506:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3478967-3479101:1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 28377
estimated length: 3000000
gap type: between scaffolds
so part of: sequence
location: 3479989..6479988
location: region:3479989-6479988:1
so has part: feature:3479989-6479988:1:region

position:3479989:1
position: 3479989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6479988:1
position: 6479988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3479989-6479988:1:region

lrrtm4
type: Gene
subclass of: SO_0000704
RO_0002162: 28377
gene: lrrtm4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6779893..>6987834
location: region:6779893-6987834:1
so has part: feature:6779893-6987834:1:exon
subclass of: SO_0000010

100567402
type: Gene
SIO_000068: ncbigene

position:6779893:1
position: 6779893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6987834:1
position: 6987834
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6779893-6987834:1:exon

lrrtm4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: lrrtm4
product: leucine rich repeat transmembrane neuronal 4, transcript variant X1
inference: similar to RNA sequence, mRNA (same species):INSD:GAFL01082376.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 2372 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_008113956.2
SIO_010081: lrrtm4
subclass of: SO_0000673
so part of: lrrtm4
location: join(6779893..6780510,6796143..6797157,6800633..6802179,6987775..>6987834)
location: region:6779893-6987834:1
so has part: feature:6779893-6780510:1:exon
so has part: feature:6796143-6797157:1:exon
so has part: feature:6800633-6802179:1:exon
so has part: feature:6987775-6987834:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6779893-6780510:1:exon

position:6780510:1
position: 6780510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6796143-6797157:1:exon

position:6796143:1
position: 6796143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6797157:1
position: 6797157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6800633-6802179:1:exon

position:6800633:1
position: 6800633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6802179:1
position: 6802179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6987775-6987834:1:exon

position:6987775:1
position: 6987775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

lrrtm4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 28377
gene: lrrtm4
product: leucine rich repeat transmembrane neuronal 4, transcript variant X2
inference: similar to RNA sequence, mRNA (same species):INSD:GAFL01082376.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 2372 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_016994724.1
SIO_010081: lrrtm4
subclass of: SO_0000673
so part of: lrrtm4
location: join(6779893..6780510,6796926..6797157,6800633..6802179,6987775..>6987834)
location: region:6779893-6987834:1
so has part: feature:6779893-6780510:1:exon
so has part: feature:6796926-6797157:1:exon
so has part: feature:6800633-6802179:1:exon
so has part: feature:6987775-6987834:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6779893-6780510:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6796926-6797157:1:exon

position:6796926:1
position: 6796926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6800633-6802179:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6987775-6987834:1:exon

lrrtm4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: lrrtm4
inference: similar to RNA sequence, mRNA (same species):INSD:GAFL01082376.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 219 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat transmembrane neuronal protein 4
translation: MGFHVIKHLRGMSAVFVLLPTVLFVTLTGAQRACPKNCRCDGKIVYCESHAFRDIPQNISGGSQGLSLRYNSIQKLKPNQFAGLHQLIWLYLDHNYIGSVDEDAFQGIRRLKELILSSNKITHLHNKTFHPVPNLRNLDLSYNKLQALQSEQFKGLRKLLILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLSRNAFAGLLKLTELHLEHNQFSKINFAHFPRLFSLRSIYLQWNKIRSISQGLTWTWSSLHNLDLSGNDIAGIEPGTFQCLPNLQKLNLDSNKLTNISQETVNAWISLISITLSGNMWECTRSICPLFTWLKNFKGNKESTMICAGPKHIQGEKVSDAVETYNICAEIPVVVTEKPYQAPKTQQRPIFVPKPTLPKLEDFQPTSFTPSPSPEFPTSGPEPEYEHVSFHKIIAGSVALFLSVAMILLVIYVSWKRYPASMKQLQQHSLMKRRRKKARESERQMNSPLQEYYVDYKPTNSETMDVSVNGSGPCTYTISGSRECELSGEVLFQKGIVMDDCAVNKVPHHMKTLPYYGYDQPVIGYCQAHKPLHVNKGYDTISRDQAETNVERSRDHSFIATIARSAAPAIYIERIPN
SIO_010081: lrrtm4
subclass of: SO_0000673
so part of: lrrtm4
location: join(6797154..6797157,6800633..6802179,6987775..>6987834)
location: region:6797154-6987834:1
so has part: feature:6797154-6797157:1:exon
so has part: feature:6800633-6802179:1:exon
so has part: feature:6987775-6987834:1:exon

XP_008112163.2
type: Protein
SIO_000068: ncbiprotein

position:6797154:1
position: 6797154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6797154-6797157:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6800633-6802179:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6987775-6987834:1:exon

lrrtm4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28377
gene: lrrtm4
inference: similar to RNA sequence, mRNA (same species):INSD:GAFL01082376.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 219 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat transmembrane neuronal protein 4
translation: MGFHVIKHLRGMSAVFVLLPTVLFVTLTGAQRACPKNCRCDGKIVYCESHAFRDIPQNISGGSQGLSLRYNSIQKLKPNQFAGLHQLIWLYLDHNYIGSVDEDAFQGIRRLKELILSSNKITHLHNKTFHPVPNLRNLDLSYNKLQALQSEQFKGLRKLLILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLSRNAFAGLLKLTELHLEHNQFSKINFAHFPRLFSLRSIYLQWNKIRSISQGLTWTWSSLHNLDLSGNDIAGIEPGTFQCLPNLQKLNLDSNKLTNISQETVNAWISLISITLSGNMWECTRSICPLFTWLKNFKGNKESTMICAGPKHIQGEKVSDAVETYNICAEIPVVVTEKPYQAPKTQQRPIFVPKPTLPKLEDFQPTSFTPSPSPEFPTSGPEPEYEHVSFHKIIAGSVALFLSVAMILLVIYVSWKRYPASMKQLQQHSLMKRRRKKARESERQMNSPLQEYYVDYKPTNSETMDVSVNGSGPCTYTISGSRECELSGEVLFQKGIVMDDCAVNKVPHHMKTLPYYGYDQPVIGYCQAHKPLHVNKGYDTISRDQAETNVERSRDHSFIATIARSAAPAIYIERIPN
SIO_010081: lrrtm4
subclass of: SO_0000673
so part of: lrrtm4
location: join(6797154..6797157,6800633..6802179,6987775..>6987834)
location: region:6797154-6987834:1
so has part: feature:6797154-6797157:1:exon
so has part: feature:6800633-6802179:1:exon
so has part: feature:6987775-6987834:1:exon

XP_016850213.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6797154-6797157:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6800633-6802179:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6987775-6987834:1:exon