Staphylococcus pseudintermedius strain SP_11304-3A plasmid pSP_11304-3A_1, complete sequence.
type: Entry
definition: Staphylococcus pseudintermedius strain SP_11304-3A plasmid pSP_11304-3A_1, complete sequence.
sequence version: NZ_CP065922.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP065922.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN17039295
keyword: RefSeq
source: Staphylococcus pseudintermedius
organism: Staphylococcus pseudintermedius
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus intermedius group.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP065922.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.11\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 222x\nSequencing Technology :: Illumina & Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 03:22:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,518\nCDSs (total) :: 2,436\nGenes (coding) :: 2,395\nCDSs (with protein) :: 2,395\nGenes (RNA) :: 82\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 4\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 15 of 41\nPseudo Genes (incomplete) :: 22 of 41\nPseudo Genes (internal stop) :: 14 of 41\nPseudo Genes (multiple problems) :: 8 of 41\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 15734
topology: circular
so has quality: SO_0000988
location: 1..15734
location: region:1-15734:1
RO_0002162: 283734

NZ_CP065922
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN17039295
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequences of Staphylococcus pseudintermedius strains isolated from canine superficial pyoderma lesions in Georgia, USA
author: Byukusenge, M.
author: Banovich, F.
author: Li, L.
author: Kuchipudi, S.V.
author: Jayarao, B.M.
author: Naikare, H.K.
journal: Unpublished

2
title: Direct Submission
author: Byukusenge, M.
author: Banovich, F.
author: Li, L.
author: Kuchipudi, S.V.
author: Jayarao, B.M.
author: Naikare, H.K.
journal: Submitted (09-DEC-2020) Veterinary and Biomedical Sciences, Pennsylvania State University, Wiley Ln, University Park, PA 16802, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15734:1
position: 15734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15734:1:source
so part of: sequence
organism: Staphylococcus pseudintermedius
mol type: genomic DNA
strain: SP_11304-3A
isolation source: skin
host: Canis lupus familiaris
plasmid: pSP_11304-3A_1
country: USA:Georgia
collection date: 2019-01-18
collected by: College of Veterinary Medicine, University of Georgia, Athens, GA, USA

283734
type: Taxonomy
SIO_000068: taxonomy

JC286_RS12485
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12485
old locus tag: JC286_12485
so part of: sequence
location: join(15533..15734,1..521)
location: region:1-15734:1
so has part: feature:15533-15734:1:exon
so has part: feature:1-521:1:exon
subclass of: SO_0000010

66877799
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:15533-15734:1:exon

position:15533:1
position: 15533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-521:1:exon

position:521:1
position: 521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

JC286_RS12485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12485
old locus tag: JC286_12485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020808033.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MLTVKNIQKNFEKSTSVLKDITIDFDENSINCIVGANGAGKTTLLNIVSGLILPSNGNIFWDGKSILENVSLRNKIFYVPVAPFFYEKLSAKDNLKLISNLYGKDVNLELIIQVLEEVGLKREDLKTPVQNFSTGMKQKLNFASMLLVDVPVILLDEPFNALDSITQSRFSKILKNLVGQKKTIIFTSHLPNTILDLSDNIYFLKRGTIVEKKRRDFFDRESLEIWLSDNQKEENQSEEE
SIO_010081: JC286_RS12485
subclass of: SO_0000673
so part of: JC286_RS12485
location: join(15533..15734,1..521)
location: region:1-15734:1
so has part: feature:15533-15734:1:exon
so has part: feature:1-521:1:exon

WP_198461505.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15533-15734:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-521:1:exon

JC286_RS12490
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12490
old locus tag: JC286_12490
so part of: sequence
location: 690..887
location: region:690-887:1
so has part: feature:690-887:1:exon
subclass of: SO_0000010

66877800
type: Gene
SIO_000068: ncbigene

position:690:1
position: 690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:887:1
position: 887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:690-887:1:exon

JC286_RS12490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12490
old locus tag: JC286_12490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000794565.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MNNKVKFERVALSMTQKDLAKKVGVTRQTISLIEQGDYNPSLALCKKICFTLGKSLDELFGEDMK
SIO_010081: JC286_RS12490
subclass of: SO_0000673
so part of: JC286_RS12490
location: 690..887
location: region:690-887:1
so has part: feature:690-887:1:exon

WP_198461507.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:690-887:1:exon

JC286_RS12495
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12495
old locus tag: JC286_12495
so part of: sequence
location: 1575..2129
location: region:1575-2129:1
so has part: feature:1575-2129:1:exon
subclass of: SO_0000010

66877801
type: Gene
SIO_000068: ncbigene

position:1575:1
position: 1575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2129:1
position: 2129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1575-2129:1:exon

JC286_RS12495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12495
old locus tag: JC286_12495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001062593.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MAMVGYARVSTQDQKLDSQIDALKEYGCTKIFSEKVSGKKFKRTELDKCLEYLREGDTLVIYKLDRLGRTTKQLIELSQWLEDNHIELQIINMNINTKDAMGKMFFTMMSAFAELEANLLSERTKKGLAAARARGRKGGRPSLPDYKKREIKFLYDERKLTGEEIAKQTGVSRSTVYRVINERK
SIO_010081: JC286_RS12495
subclass of: SO_0000673
so part of: JC286_RS12495
location: 1575..2129
location: region:1575-2129:1
so has part: feature:1575-2129:1:exon

WP_198461509.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1575-2129:1:exon

JC286_RS12500
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12500
old locus tag: JC286_12500
so part of: sequence
location: complement(2479..2709)
location: region:2479-2709:-1
so has part: feature:2479-2709:-1:exon
subclass of: SO_0000010

66877802
type: Gene
SIO_000068: ncbigene

position:2479:-1
position: 2479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2709:-1
position: 2709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2479-2709:-1:exon

JC286_RS12500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12500
old locus tag: JC286_12500
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENNKSFIDKYSQKKEVNNETKETPFDSTIKKKDDFKLVKIDSQIHGDLKLAALKNNTTMKNLVDSAIREYLNKLY
SIO_010081: JC286_RS12500
subclass of: SO_0000673
so part of: JC286_RS12500
location: complement(2479..2709)
location: region:2479-2709:-1
so has part: feature:2479-2709:-1:exon

WP_198461511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2479-2709:-1:exon

JC286_RS12505
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12505
old locus tag: JC286_12505
so part of: sequence
location: complement(3061..4056)
location: region:3061-4056:-1
so has part: feature:3061-4056:-1:exon
subclass of: SO_0000010

66877803
type: Gene
SIO_000068: ncbigene

position:3061:-1
position: 3061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4056:-1
position: 4056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3061-4056:-1:exon

JC286_RS12505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12505
old locus tag: JC286_12505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002943483.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPIADNEVKNILKNHNIRKDTYKLIKNKDIIQDLATKYGNVLNRTTIIKILHVLKKDYGVPNQTSISTFKRFTVNVLGIFEEVPIFFEKKGEKIERYVSTHTTVSPYEIALSLLSRSFLSHYSGLYVHDLTLNNPKDIYINKEQSKKPRDSNNAKLTQGKVNYAFSKPMRKTKSIYNFNYKNTFYRVHVLNTKNTDNTGVIKKKPMGFSKSISVTNIERTLLDSTTRPQYSGGPQEVVTAYQNARKIVKINLLKKYLDKFNYIYPYQKSILFYLKYADYSQKSLDVFEWVIKRNDDKGILFYLDYQILHKSLDEEIGIYYPQELKTKNKDL
SIO_010081: JC286_RS12505
subclass of: SO_0000673
so part of: JC286_RS12505
location: complement(3061..4056)
location: region:3061-4056:-1
so has part: feature:3061-4056:-1:exon

WP_198461513.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3061-4056:-1:exon

JC286_RS12510
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12510
old locus tag: JC286_12510
so part of: sequence
location: 4247..5125
location: region:4247-5125:1
so has part: feature:4247-5125:1:exon
subclass of: SO_0000010

66877804
type: Gene
SIO_000068: ncbigene

position:4247:1
position: 4247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5125:1
position: 5125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4247-5125:1:exon

JC286_RS12510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12510
old locus tag: JC286_12510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002512553.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nucleotidyl transferase AbiEii/AbiGii toxin family protein
translation: MDSEIIKRTTLKAIFLDERLENILTLKGGNALHLHGLTKRESQDLDFSIRENIRLAKKNEGVIFESNIKKAFEEKGYHVISYKFQDKPKVRDDKTPPFWGGYMITFSIIKYTELQRLESKGIQNFNAYAESMGDGSKKIQIDLSFEEYTDPRTATEIDGVKIYLYSPLMIVYEKIRASCQQLEEYVLSSDKTRARDLYDIYSILTNISNVELREEVVNPNNFHILRRMFELKKVPIELIPKIKRIKERLLQDYKQTVLPQIPANAERPDFEYLFMYNIELFDELYMSLKNNE
SIO_010081: JC286_RS12510
subclass of: SO_0000673
so part of: JC286_RS12510
location: 4247..5125
location: region:4247-5125:1
so has part: feature:4247-5125:1:exon

WP_198461515.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4247-5125:1:exon

JC286_RS12515
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12515
old locus tag: JC286_12515
so part of: sequence
location: complement(5645..6457)
location: region:5645-6457:-1
so has part: feature:5645-6457:-1:exon
subclass of: SO_0000010

66877805
type: Gene
SIO_000068: ncbigene

position:5645:-1
position: 5645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6457:-1
position: 6457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5645-6457:-1:exon

JC286_RS12515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12515
old locus tag: JC286_12515
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYLKEVEFLALLYQNLKEIGVLVLLFFTYTLIKALNHNIMYQKKSTEKLKSGIRSTLIFLAATIVSLIYLLVMISLSMSQFPVEEFRKYVMDWNESVPFLILIIIYSMVFALALWPFIGEHSRKYYYMENVGNIIIEREIINRLTIGNRDKLILKDGKETYTEVDVTDVTYLKYKIQRQNYLSIVRDIESHMRKIKDKHIAWKIMICSIAFGIPSVYLIWQISEFIDQLKNFKTYIYMYIGILTLPVIVLTELYVLAWVVFRSLFTKKSK
SIO_010081: JC286_RS12515
subclass of: SO_0000673
so part of: JC286_RS12515
location: complement(5645..6457)
location: region:5645-6457:-1
so has part: feature:5645-6457:-1:exon

WP_198461517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5645-6457:-1:exon

JC286_RS12520
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12520
old locus tag: JC286_12520
pseudo: true
so part of: sequence
location: complement(7611..>8349)
location: region:7611-8349:-1
so has part: feature:7611-8349:-1:exon
subclass of: SO_0000010

66877806
type: Gene
SIO_000068: ncbigene

position:7611:-1
position: 7611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8349:-1
position: 8349
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7611-8349:-1:exon

JC286_RS12520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12520
old locus tag: JC286_12520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001199881.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: protein rep
SIO_010081: JC286_RS12520
subclass of: SO_0000673
so part of: JC286_RS12520
location: complement(7611..>8349)
location: region:7611-8349:-1
so has part: feature:7611-8349:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7611-8349:-1:exon

JC286_RS12525
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12525
old locus tag: JC286_12525
so part of: sequence
location: 8487..9377
location: region:8487-9377:1
so has part: feature:8487-9377:1:exon
subclass of: SO_0000010

66877807
type: Gene
SIO_000068: ncbigene

position:8487:1
position: 8487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9377:1
position: 9377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8487-9377:1:exon

JC286_RS12525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12525
old locus tag: JC286_12525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012655895.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MTKVISINNFKGGVSKTSTTAGIAYVLSKVKKKSVLVVDLDPQADLTDLLLKSFNRSETNLLTEVLSSHDETLIDEKEDAILDALLSKSNTYNEKDLFHTLKDGISLKQCLIELNDQLSLIPSDFNMIGFPYLLEDLGLNRVDGSRYFDSFLQEIKHNYDYILIDTPPTLSDFANNAIYACDYSLIVVQTHVRSFNAVEKLISHLSTFRDLHRNNFAIAGILPVMFKNKGKIDTFIMKVLDRVYKDNVFKNKVFQRERVKYWDVNGIKNEDMHDKNALNMYVNITDELIEKVEGDD
SIO_010081: JC286_RS12525
subclass of: SO_0000673
so part of: JC286_RS12525
location: 8487..9377
location: region:8487-9377:1
so has part: feature:8487-9377:1:exon

WP_198461483.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8487-9377:1:exon

JC286_RS12530
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12530
old locus tag: JC286_12530
so part of: sequence
location: 9379..9672
location: region:9379-9672:1
so has part: feature:9379-9672:1:exon
subclass of: SO_0000010

66877808
type: Gene
SIO_000068: ncbigene

position:9379:1
position: 9379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9672:1
position: 9672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9379-9672:1:exon

JC286_RS12530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12530
old locus tag: JC286_12530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001632021.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MREDLFNRSRIKNYENTMIDVKERYSNLPSYSLRVKGITHTKVHAVKQIGLYDNIDDVITDALEVLIQSYNEEDAKKISDYEIEFNEIKLKKANLKK
SIO_010081: JC286_RS12530
subclass of: SO_0000673
so part of: JC286_RS12530
location: 9379..9672
location: region:9379-9672:1
so has part: feature:9379-9672:1:exon

WP_228197179.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9379-9672:1:exon

JC286_RS12535
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12535
old locus tag: JC286_12535
so part of: sequence
location: complement(9706..9984)
location: region:9706-9984:-1
so has part: feature:9706-9984:-1:exon
subclass of: SO_0000010

66877809
type: Gene
SIO_000068: ncbigene

position:9706:-1
position: 9706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9984:-1
position: 9984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9706-9984:-1:exon

JC286_RS12535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12535
old locus tag: JC286_12535
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKIFNHKKTIDLNLDRYNQYKRELLRLYKRMILDEHTKNIYRMNANINMALNSLLNNLEQQSIHDKETVELMRKFIELLKPYRILKDEKEK
SIO_010081: JC286_RS12535
subclass of: SO_0000673
so part of: JC286_RS12535
location: complement(9706..9984)
location: region:9706-9984:-1
so has part: feature:9706-9984:-1:exon

WP_198461487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9706-9984:-1:exon

JC286_RS12540
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12540
old locus tag: JC286_12540
so part of: sequence
location: complement(10164..11030)
location: region:10164-11030:-1
so has part: feature:10164-11030:-1:exon
subclass of: SO_0000010

66877810
type: Gene
SIO_000068: ncbigene

position:10164:-1
position: 10164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11030:-1
position: 11030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10164-11030:-1:exon

JC286_RS12540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12540
old locus tag: JC286_12540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002477820.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication/maintenance protein RepL
translation: MTMTHQCINLEEYQNFNSINEMDHNVKQFNVLLKKTHYETLNLLKQYSCKVIGVSHIKVQTIAKQLGKSIATIKRHLKYLKDNGFISVINTFRRKSGGKGANAYVINSVEYRNVFLSKIKNEPSKMSHRKTAKSVLQNQAPQAIQEVKVQKETINSLKLLKSFISTVKRKSNTYLEKIEAIKNYRECPQNVPHNLYMVNRAYFSDKQISVIHSIIHKNIDKFESLLSDDQIHDVYFDTFKSLVKALRKYHKENGQEVRNIYAYAYTTSKRQVFKYTTQNAWNFSPSFM
SIO_010081: JC286_RS12540
subclass of: SO_0000673
so part of: JC286_RS12540
location: complement(10164..11030)
location: region:10164-11030:-1
so has part: feature:10164-11030:-1:exon

WP_242060568.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10164-11030:-1:exon

JC286_RS12545
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12545
old locus tag: JC286_12545
so part of: sequence
location: 11702..12313
location: region:11702-12313:1
so has part: feature:11702-12313:1:exon
subclass of: SO_0000010

66877811
type: Gene
SIO_000068: ncbigene

position:11702:1
position: 11702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12313:1
position: 12313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11702-12313:1:exon

JC286_RS12545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12545
old locus tag: JC286_12545
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDNSKLLFSDHFYQLRRNPRWKLKLLLAFLTILTVSGVSVFGVDFNDVYKNAGINEEQLEMVKKLGIVLGITGGTVTSIINIIFIFVIVLIISKIMKADIRGVSIFSATLSFVLLTLIIKLIVLVIQLIVGVPINEYSITSLNIFDKGNELLSILDIQNIFASYLFGLIFYKTSGLSGKISFILGAGYFLFIVILAILAGSIK
SIO_010081: JC286_RS12545
subclass of: SO_0000673
so part of: JC286_RS12545
location: 11702..12313
location: region:11702-12313:1
so has part: feature:11702-12313:1:exon

WP_198461489.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11702-12313:1:exon

JC286_RS12555
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12555
old locus tag: JC286_12555
so part of: sequence
location: 13043..13264
location: region:13043-13264:1
so has part: feature:13043-13264:1:exon
subclass of: SO_0000010

66877813
type: Gene
SIO_000068: ncbigene

position:13043:1
position: 13043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13264:1
position: 13264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13043-13264:1:exon

JC286_RS12555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12555
old locus tag: JC286_12555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000915920.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative cyclic bacteriocin
translation: MLNLHKKIAWTGVKGSAVTSFVSALATGSDIWAALTVAGIAFGGGVGTAIAAIGRATVVKFIKRWGVKKAAAW
SIO_010081: JC286_RS12555
subclass of: SO_0000673
so part of: JC286_RS12555
location: 13043..13264
location: region:13043-13264:1
so has part: feature:13043-13264:1:exon

WP_198461493.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13043-13264:1:exon

JC286_RS12560
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12560
old locus tag: JC286_12560
so part of: sequence
location: 13622..15016
location: region:13622-15016:1
so has part: feature:13622-15016:1:exon
subclass of: SO_0000010

66877814
type: Gene
SIO_000068: ncbigene

position:13622:1
position: 13622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15016:1
position: 15016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13622-15016:1:exon

JC286_RS12560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12560
old locus tag: JC286_12560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001624188.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKDLLYRVGLKQSDIFNLIYLTDVLKKIPVYLSFIAIGLGISLNYQQPWILLFKTILSIIYFMSISYIIQIIYTNIKVKSNKKIVSISYFFINIILGIAVAIIGFAIAFLILNIFIGPFLIFSSHIIKIKEKFEWSNYLHSVKSQFFDIHSKTTVILDVISPHTIFIKINFYNVMWLSLMLLILVILYRCNLIGYWYRKEDVYNSYLNRDISLPNSLFFVQLKQLLSNREEINLHKPFFYISYSIWFFVGVIIYFSQFSSGQLANAMAFLMILNTVTRDSFSAGVDLFTRSLRFDSDGKSIGLYRISNTKFQRIYEAKISLIRFLGIKETFIIAILLSLFFNMDVYLYFLLIQITVINAIIIPNLSLLPSYLSPHFNYQHYSEFDYFEDQSILEDSLFDKIKNFLSASYFFIFFIGFLLQREYVDIMIFIITYNFLLFIILVYFTGFSKRKITKKWEKRDLYL
SIO_010081: JC286_RS12560
subclass of: SO_0000673
so part of: JC286_RS12560
location: 13622..15016
location: region:13622-15016:1
so has part: feature:13622-15016:1:exon

WP_242060569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13622-15016:1:exon

JC286_RS12565
type: Gene
subclass of: SO_0000704
RO_0002162: 283734
locus tag: JC286_RS12565
old locus tag: JC286_12565
so part of: sequence
location: 15048..15518
location: region:15048-15518:1
so has part: feature:15048-15518:1:exon
subclass of: SO_0000010

66877815
type: Gene
SIO_000068: ncbigene

position:15048:1
position: 15048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15518:1
position: 15518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15048-15518:1:exon

JC286_RS12565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 283734
locus tag: JC286_RS12565
old locus tag: JC286_12565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011382158.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: stage II sporulation protein M
translation: MFVFFAGFFIGILLYYFLDVDLGKAMISEDLNVKDLFIHNFTYFIIAIFGFLFLGTLNVVMILLNAAILGFFIAHGIKSDQVIQVILALAPHSILEIAALLIASTFSLGYISYLYNKFIKKKKIETKIHRDFAITILLVLILTLVAALIEKYVNLI
SIO_010081: JC286_RS12565
subclass of: SO_0000673
so part of: JC286_RS12565
location: 15048..15518
location: region:15048-15518:1
so has part: feature:15048-15518:1:exon

WP_198461497.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15048-15518:1:exon