Staphylococcus pseudintermedius strain SP_11304-3A plasmid pSP_11304-3A_1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus intermedius group.
Complete genome sequences of Staphylococcus pseudintermedius strains isolated from canine superficial pyoderma lesions in Georgia, USA
Submitted (09-DEC-2020) Veterinary and Biomedical Sciences, Pennsylvania State University, Wiley Ln, University Park, PA 16802, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP065922.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.11\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 222x\nSequencing Technology :: Illumina & Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 03:22:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,518\nCDSs (total) :: 2,436\nGenes (coding) :: 2,395\nCDSs (with protein) :: 2,395\nGenes (RNA) :: 82\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 4\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 15 of 41\nPseudo Genes (incomplete) :: 22 of 41\nPseudo Genes (internal stop) :: 14 of 41\nPseudo Genes (multiple problems) :: 8 of 41\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
College of Veterinary Medicine, University of Georgia, Athens, GA, USA
COORDINATES: similar to AA sequence:RefSeq:WP_020808033.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000794565.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_001062593.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002943483.1
COORDINATES: similar to AA sequence:RefSeq:WP_002512553.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_001199881.1
GO:0006260 - DNA replication [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012655895.1
COORDINATES: similar to AA sequence:RefSeq:WP_001632021.1
COORDINATES: similar to AA sequence:RefSeq:WP_002477820.1
COORDINATES: similar to AA sequence:RefSeq:WP_000915920.1
COORDINATES: similar to AA sequence:RefSeq:WP_001624188.1
COORDINATES: similar to AA sequence:RefSeq:WP_011382158.1