Kosakonia radicincitans strain DSM 107547 plasmid pKrDSM107547, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kosakonia.
First Report of a Kosakonia radicincitans Bacteremia from Europe (Austria) - Identification and Whole Genome Sequencing
Submitted (14-MAY-2019) Center for Bioinformatics, University of Tuebingen, Sand 14, Tuebingen 72076, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP040393.1.\nBacteria and source DNA available from Institute of Hygiene,\nMicrobiology and Environmental Medicine - Medical University of\nGraz.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 12-OCT-2018\nAssembly Method :: HGAP.3 v. OCT-2018\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 74.51x\nSequencing Technology :: PacBio RSII SMRT\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 10:47:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,483\nCDSs (total) :: 5,365\nGenes (coding) :: 5,274\nCDSs (with protein) :: 5,274\nGenes (RNA) :: 118\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 85\nncRNAs :: 11\nPseudo Genes (total) :: 91\nCDSs (without protein) :: 91\nPseudo Genes (ambiguous residues) :: 0 of 91\nPseudo Genes (frameshifted) :: 46 of 91\nPseudo Genes (incomplete) :: 67 of 91\nPseudo Genes (internal stop) :: 14 of 91\nPseudo Genes (multiple problems) :: 29 of 91\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Institute of Hygiene, Microbiology and Environmental Medicine - Medical University of Graz
COORDINATES: similar to AA sequence:RefSeq:WP_019105447.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013199719.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF018154.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004953869.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF037432.2
HEPN/Toprim-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001494628.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612015.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000807689.1
COORDINATES: similar to AA sequence:RefSeq:WP_008502211.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017891108.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495507.1
plasmid partitioning/stability family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016495506.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245386.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495627.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495625.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495624.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495623.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495621.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495620.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495619.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495618.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495617.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_016495616.1
COORDINATES: similar to AA sequence:RefSeq:WP_020316901.1
COORDINATES: similar to AA sequence:RefSeq:WP_001481272.1
COORDINATES: similar to AA sequence:RefSeq:NP_460510.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:NP_460511.1
COORDINATES: similar to AA sequence:RefSeq:WP_008900223.1
COORDINATES: similar to AA sequence:RefSeq:WP_000627495.1
IS21-like element ISSen3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001531258.1
IS21-like element ISSen3 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_010952952.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013027297.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015697723.1
COORDINATES: protein motif:HMM:NF007279.0
COORDINATES: protein motif:HMM:NF036604.2
COORDINATES: similar to AA sequence:RefSeq:WP_016495612.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063857.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063862.1
COORDINATES: similar to AA sequence:RefSeq:WP_001234456.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495609.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016495608.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495607.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495606.1
GO:0005576 - extracellular region [Evidence IEA]
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_008324958.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_016495604.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_015572089.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_016495602.1
F-type conjugal transfer pilus assembly protein TraB
COORDINATES: similar to AA sequence:RefSeq:WP_011495512.1
COORDINATES: similar to AA sequence:RefSeq:WP_008325086.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_016495596.1
COORDINATES: similar to AA sequence:RefSeq:WP_008325087.1
COORDINATES: similar to AA sequence:RefSeq:WP_008325088.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_016495593.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_019106297.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495592.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495590.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495589.1
COORDINATES: similar to AA sequence:RefSeq:WP_019104690.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_016495587.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_007853408.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_016495585.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_016495584.1
COORDINATES: similar to AA sequence:RefSeq:WP_011906574.1
COORDINATES: similar to AA sequence:RefSeq:WP_019843237.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495580.1
conjugal transfer pilus assembly protein TraH
COORDINATES: similar to AA sequence:RefSeq:WP_007853387.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugal transfer mating pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_003018683.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016495576.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_016495575.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495574.1
COORDINATES: similar to AA sequence:RefSeq:WP_008322799.1
COORDINATES: similar to AA sequence:RefSeq:WP_007778977.1
COORDINATES: similar to AA sequence:RefSeq:WP_014172383.1
COORDINATES: similar to AA sequence:RefSeq:WP_017460061.1
COORDINATES: similar to AA sequence:RefSeq:WP_000023780.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_001131634.1
COORDINATES: similar to AA sequence:RefSeq:WP_000648132.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006894239.1
COORDINATES: similar to AA sequence:RefSeq:WP_000067287.1
COORDINATES: similar to AA sequence:RefSeq:WP_001722340.1
COORDINATES: similar to AA sequence:RefSeq:WP_011846847.1
COORDINATES: similar to AA sequence:RefSeq:WP_014229971.1
COORDINATES: similar to AA sequence:RefSeq:WP_001696621.1
stationary phase growth adaptation protein
COORDINATES: similar to AA sequence:RefSeq:WP_007755266.1
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_000091963.1
COORDINATES: similar to AA sequence:RefSeq:WP_012587681.1
COORDINATES: similar to AA sequence:RefSeq:WP_014411477.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251292.1
COORDINATES: similar to AA sequence:RefSeq:WP_008502206.1
COORDINATES: similar to AA sequence:RefSeq:WP_001568022.1
COORDINATES: similar to AA sequence:RefSeq:WP_001277207.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495535.1
COORDINATES: similar to AA sequence:RefSeq:WP_020883176.1
COORDINATES: similar to AA sequence:RefSeq:WP_001562575.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005221001.1
COORDINATES: similar to AA sequence:RefSeq:WP_032495017.1