Polymorphobacter megasporae strain PAMC 29362 plasmid p29362-3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingosinicellaceae; Polymorphobacter.
Diversity and Physiological Characteristics of Antarctic Lichens-Associated Bacteria
Submitted (19-AUG-2021) Division of Polar Life Sciences, Korea Polar Research institute, 26 Songdomirae-ro, Incheon 21990, South Korea
Submitted (25-JAN-2021) Division of Polar Life Sciences, Korea Polar Research Institute, 26 Songdomirae-ro, Incheon 21990, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP081850.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2021\nAssembly Method :: Flye v. 2.8.3\nAssembly Name :: PAMC29362_nextpolish\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 88.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/28/2022 08:57:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,546\nCDSs (total) :: 4,494\nGenes (coding) :: 4,391\nCDSs (with protein) :: 4,391\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 103\nCDSs (without protein) :: 103\nPseudo Genes (ambiguous residues) :: 0 of 103\nPseudo Genes (frameshifted) :: 45 of 103\nPseudo Genes (incomplete) :: 74 of 103\nPseudo Genes (internal stop) :: 28 of 103\nPseudo Genes (multiple problems) :: 33 of 103\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Polymorphobacter megasporae
Antarctica: King George Island, Barton Peninsula
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008997059.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020604.2
COORDINATES: similar to AA sequence:RefSeq:WP_003053560.1
COORDINATES: similar to AA sequence:RefSeq:WP_007674248.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR02686.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612267.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015824.2
COORDINATES: similar to AA sequence:RefSeq:WP_016790223.1
COORDINATES: similar to AA sequence:RefSeq:WP_012553437.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911239.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018099694.1
COORDINATES: similar to AA sequence:RefSeq:WP_001561310.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212934.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: protein motif:HMM:NF023696.2
COORDINATES: similar to AA sequence:RefSeq:WP_012631434.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: similar to AA sequence:RefSeq:WP_008600209.1
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012555424.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503521.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406232.1
COORDINATES: similar to AA sequence:RefSeq:WP_004642455.1
COORDINATES: similar to AA sequence:RefSeq:WP_015073415.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF015863.2
COORDINATES: protein motif:HMM:NF023288.2
N-acetylmuramidase domain-containing protein