Pseudochrobactrum algeriensis isolate C130915_07 plasmid pPB07_2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Pseudochrobactrum.
Pseudochrobactrum algeriensis sp. nov., isolated from lymph nodes of Algerian cattle
Submitted (17-MAY-2021) Unite Infectiologie et Sante Publique, UMR 1282, INRAE - Institut national de recherche pour l'agriculture, l'alimentation et l'environnement, Site de Tours-Nouzilly, Bat. 213, Nouzilly 37380, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP075362.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2018\nAssembly Method :: SMRT Analysis v. 2.3.0\nAssembly Name :: C130915_07_PacBio\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:03:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,688\nCDSs (total) :: 3,609\nGenes (coding) :: 3,554\nCDSs (with protein) :: 3,554\nGenes (RNA) :: 79\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 4\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 19 of 55\nPseudo Genes (incomplete) :: 40 of 55\nPseudo Genes (internal stop) :: 8 of 55\nPseudo Genes (multiple problems) :: 10 of 55\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudochrobactrum algeriensis
COORDINATES: similar to AA sequence:RefSeq:WP_003501082.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006939175.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013893270.1
COORDINATES: protein motif:HMM:NF018482.2
invasion associated locus B family protein
COORDINATES: protein motif:HMM:NF015831.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015241466.1
COORDINATES: similar to AA sequence:RefSeq:WP_018210789.1
COORDINATES: similar to AA sequence:RefSeq:WP_016555382.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531079.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011971086.1
COORDINATES: protein motif:HMM:NF016957.2
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_011982850.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_014531075.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531074.1
COORDINATES: similar to AA sequence:RefSeq:WP_017265131.1
COORDINATES: protein motif:HMM:NF016491.2
COORDINATES: similar to AA sequence:RefSeq:WP_011578638.1
COORDINATES: similar to AA sequence:RefSeq:WP_018210779.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_017268591.1
COORDINATES: similar to AA sequence:RefSeq:WP_009469545.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018210776.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF037421.2
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF018691.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012881327.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012653081.1
COORDINATES: similar to AA sequence:RefSeq:WP_018096336.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015887087.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007881755.1
COORDINATES: similar to AA sequence:RefSeq:WP_010474284.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007811879.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611590.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006315213.1
GO:0003905 - alkylbase DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006697857.1
COORDINATES: similar to AA sequence:RefSeq:WP_007881214.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332730.1
COORDINATES: protein motif:HMM:NF024846.2
COORDINATES: similar to AA sequence:RefSeq:WP_007881193.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010974717.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342368.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013761217.1
COORDINATES: protein motif:HMM:NF040974.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011982795.1
COORDINATES: similar to AA sequence:RefSeq:WP_007757320.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528282.1
COORDINATES: similar to AA sequence:RefSeq:WP_018260113.1
COORDINATES: similar to AA sequence:RefSeq:WP_015857238.1
COORDINATES: similar to AA sequence:RefSeq:WP_010920584.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611355.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164822.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012650521.1
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003168184.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650523.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650524.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: protein motif:HMM:NF015438.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006725088.1
COORDINATES: similar to AA sequence:RefSeq:WP_026155209.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.