Pseudochrobactrum algeriensis isolate C130915_07 plasmid pPB07_1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Pseudochrobactrum.
Pseudochrobactrum algeriensis sp. nov., isolated from lymph nodes of Algerian cattle
Submitted (17-MAY-2021) Unite Infectiologie et Sante Publique, UMR 1282, INRAE - Institut national de recherche pour l'agriculture, l'alimentation et l'environnement, Site de Tours-Nouzilly, Bat. 213, Nouzilly 37380, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP075360.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2018\nAssembly Method :: SMRT Analysis v. 2.3.0\nAssembly Name :: C130915_07_PacBio\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:03:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,688\nCDSs (total) :: 3,609\nGenes (coding) :: 3,554\nCDSs (with protein) :: 3,554\nGenes (RNA) :: 79\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 4\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 19 of 55\nPseudo Genes (incomplete) :: 40 of 55\nPseudo Genes (internal stop) :: 8 of 55\nPseudo Genes (multiple problems) :: 10 of 55\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudochrobactrum algeriensis
COORDINATES: similar to AA sequence:RefSeq:WP_018318927.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010913928.1
COORDINATES: similar to AA sequence:RefSeq:WP_006726509.1
COORDINATES: similar to AA sequence:RefSeq:WP_002723877.1
COORDINATES: similar to AA sequence:RefSeq:WP_012641012.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011842794.1
COORDINATES: similar to AA sequence:RefSeq:WP_006726505.1
COORDINATES: similar to AA sequence:RefSeq:WP_006726504.1
COORDINATES: similar to AA sequence:RefSeq:WP_002723889.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578652.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008121156.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472448.1
COORDINATES: similar to AA sequence:RefSeq:WP_017263807.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_006472916.1
COORDINATES: similar to AA sequence:RefSeq:WP_016555850.1
ATP-dependent Clp protease proteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013393222.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_006224091.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012091322.1
COORDINATES: similar to AA sequence:RefSeq:WP_010930411.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006469999.1
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012093429.1
COORDINATES: similar to AA sequence:RefSeq:WP_007881541.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879525.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879526.1
GO:0020037 - heme binding [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0033212 - iron import into cell [Evidence IEA]
iron uptake transporter deferrochelatase/peroxidase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019171590.1
COORDINATES: similar to AA sequence:RefSeq:WP_011390347.1
GO:0033573 - high-affinity iron permease complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005381 - iron ion transmembrane transporter activity [Evidence IEA]
GO:0034755 - iron ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008834474.1
COORDINATES: similar to AA sequence:RefSeq:WP_009340256.1
GO:0046421 - methylisocitrate lyase activity [Evidence IEA]
GO:0019629 - propionate catabolic process, 2-methylcitrate cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011297972.1
GO:0050440 - 2-methylcitrate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012564209.1
COORDINATES: similar to AA sequence:RefSeq:WP_002714945.1
short-chain fatty acyl-CoA regulator family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006087662.1
COORDINATES: similar to AA sequence:RefSeq:WP_010661167.1
COORDINATES: similar to AA sequence:RefSeq:WP_006312133.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020011701.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020810411.1
COORDINATES: similar to AA sequence:RefSeq:WP_004115468.1
COORDINATES: similar to AA sequence:RefSeq:WP_004433196.1
COORDINATES: similar to AA sequence:RefSeq:WP_003503982.1
COORDINATES: similar to AA sequence:RefSeq:WP_006468994.1
COORDINATES: similar to AA sequence:RefSeq:WP_019173787.1
COORDINATES: similar to AA sequence:RefSeq:WP_012091699.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592672.1
COORDINATES: similar to AA sequence:RefSeq:WP_014529854.1
COORDINATES: similar to AA sequence:RefSeq:WP_015008543.1
GO:0055085 - transmembrane transport [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB
COORDINATES: similar to AA sequence:RefSeq:WP_007879363.1
sn-glycerol-3-phosphate ABC transporter permease UgpA
COORDINATES: similar to AA sequence:RefSeq:WP_018855599.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015794 - glycerol-3-phosphate transmembrane transport [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter permease UgpE
COORDINATES: similar to AA sequence:RefSeq:WP_015917711.1
sn-glycerol-3-phosphate import ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_003511524.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006467306.1
COORDINATES: similar to AA sequence:RefSeq:WP_006313933.1
saccharopine dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007932629.1
COORDINATES: similar to AA sequence:RefSeq:WP_020010475.1
COORDINATES: similar to AA sequence:RefSeq:WP_006164581.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472649.1
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012093163.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879413.1
siderophore ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF016818.2
COORDINATES: similar to AA sequence:RefSeq:WP_020047256.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011982593.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009565119.1
autoinducer 2 ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011910293.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008122580.1
COORDINATES: similar to AA sequence:RefSeq:WP_007090236.1
COORDINATES: similar to AA sequence:RefSeq:WP_007874529.1
COORDINATES: similar to AA sequence:RefSeq:WP_013637544.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010660794.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019565871.1
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_008646397.1
COORDINATES: similar to AA sequence:RefSeq:WP_001667069.1
COORDINATES: similar to AA sequence:RefSeq:WP_020295079.1
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020678387.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_009797829.1
COORDINATES: similar to AA sequence:RefSeq:WP_007880809.1
COORDINATES: similar to AA sequence:RefSeq:WP_020812324.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020812325.1
COORDINATES: similar to AA sequence:RefSeq:WP_007877257.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595707.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005671800.1
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_003498403.1
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006256541.1
GO:0055051 - ATP-binding cassette (ABC) transporter complex, integrated substrate binding [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0033230 - ABC-type cysteine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0033228 - cysteine export across plasma membrane [Evidence IEA]
thiol reductant ABC exporter subunit CydC
COORDINATES: similar to AA sequence:RefSeq:WP_004690175.1
thiol reductant ABC exporter subunit CydD
COORDINATES: similar to AA sequence:RefSeq:WP_004684990.1
GbsR/MarR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010658734.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_013502418.1
GO:0015075 - monoatomic ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007879190.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002970701.1
monovalent cation/H+ antiporter subunit D
COORDINATES: similar to AA sequence:RefSeq:WP_003493763.1
COORDINATES: similar to AA sequence:RefSeq:WP_018182924.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_017490491.1
COORDINATES: similar to AA sequence:RefSeq:WP_011504009.1
COORDINATES: similar to AA sequence:RefSeq:WP_008593765.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010658093.1
GO:0047429 - nucleoside triphosphate diphosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_002517801.2
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009757894.1
low molecular weight phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009451874.1
COORDINATES: similar to AA sequence:RefSeq:WP_016149296.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007873432.1
COORDINATES: similar to AA sequence:RefSeq:WP_011579540.1
GO:0008760 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014008430.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_006697669.1
GO:0015074 - DNA integration [Evidence IEA]
phage integrase N-terminal SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009117393.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_006160578.1
COORDINATES: similar to AA sequence:RefSeq:WP_011533261.1
COORDINATES: similar to AA sequence:RefSeq:WP_003515941.1
COORDINATES: similar to AA sequence:RefSeq:WP_003057496.1
COORDINATES: similar to AA sequence:RefSeq:WP_020656948.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982528.1
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_006811660.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_000176940.1
ADP-ribosylglycohydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018430790.1
COORDINATES: similar to AA sequence:RefSeq:WP_001223014.1
COORDINATES: similar to AA sequence:RefSeq:WP_009589957.1
COORDINATES: similar to AA sequence:RefSeq:WP_014129364.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011581811.1
COORDINATES: similar to AA sequence:RefSeq:WP_006073543.1
COORDINATES: similar to AA sequence:RefSeq:WP_006468297.1
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010660315.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008229794.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006206711.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006206712.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014132925.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006206714.1
COORDINATES: similar to AA sequence:RefSeq:WP_006206715.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229581.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010157471.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020800490.1
COORDINATES: similar to AA sequence:RefSeq:WP_006470709.1
COORDINATES: similar to AA sequence:RefSeq:WP_020294818.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014762204.1
COORDINATES: protein motif:HMM:NF010396.0
COORDINATES: similar to AA sequence:RefSeq:WP_019171837.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126186.1
COORDINATES: similar to AA sequence:RefSeq:WP_007797063.1
COORDINATES: similar to AA sequence:RefSeq:WP_006312167.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011747520.1
COORDINATES: similar to AA sequence:RefSeq:WP_006467519.1
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_010682114.1
sensor histidine kinase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889920.1
COORDINATES: protein motif:HMM:NF001419.0
GO:0047134 - protein-disulfide reductase (NAD(P)) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012113092.1
COORDINATES: protein motif:HMM:NF014672.2
COORDINATES: similar to AA sequence:RefSeq:WP_007879540.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093088.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016769646.1
COORDINATES: similar to AA sequence:RefSeq:WP_010658897.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879348.1
COORDINATES: similar to AA sequence:RefSeq:WP_018271046.1
COORDINATES: similar to AA sequence:RefSeq:WP_012520539.1
COORDINATES: protein motif:HMM:NF014841.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018896485.1
COORDINATES: similar to AA sequence:RefSeq:WP_018063731.1
GO:0004417 - hydroxyethylthiazole kinase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004115248.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007538197.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013165806.1
COORDINATES: similar to AA sequence:RefSeq:WP_018389979.1
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014130106.1
COORDINATES: similar to AA sequence:RefSeq:WP_018095021.1
COORDINATES: similar to AA sequence:RefSeq:WP_006195589.1
COORDINATES: similar to AA sequence:RefSeq:WP_007600752.1
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: similar to AA sequence:RefSeq:WP_020202428.1
COORDINATES: similar to AA sequence:RefSeq:WP_006471343.1
COORDINATES: similar to AA sequence:RefSeq:WP_002966096.1
COORDINATES: similar to AA sequence:RefSeq:WP_004686085.1
COORDINATES: similar to AA sequence:RefSeq:WP_019298781.1
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012654187.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006698348.1
COORDINATES: similar to AA sequence:RefSeq:WP_004127926.1
COORDINATES: similar to AA sequence:RefSeq:WP_014743881.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873533.1
COORDINATES: similar to AA sequence:RefSeq:WP_007877184.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007008201.1
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006149574.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019444229.1
GO:0004047 - aminomethyltransferase activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
glycine cleavage system aminomethyltransferase GcvT
COORDINATES: nucleotide motif:Rfam:14.4:RF00504
glycine riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF013964.2
HNH endonuclease signature motif containing protein
COORDINATES: protein motif:HMM:NF015776.2
COORDINATES: protein motif:HMM:NF024096.2
PD-(D/E)XK nuclease-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013893480.1
COORDINATES: protein motif:HMM:TIGR04474.1
COORDINATES: similar to AA sequence:RefSeq:WP_011413816.1
COORDINATES: similar to AA sequence:RefSeq:WP_017272178.1
COORDINATES: protein motif:HMM:NF027273.2
COORDINATES: similar to AA sequence:RefSeq:WP_010660235.1
COORDINATES: similar to AA sequence:RefSeq:WP_019170687.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015340456.1
COORDINATES: similar to AA sequence:RefSeq:WP_006471892.1
COORDINATES: similar to AA sequence:RefSeq:WP_006471894.1
phage terminase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013913213.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012562739.1
COORDINATES: protein motif:HMM:NF013506.2
COORDINATES: protein motif:HMM:NF014921.2
COORDINATES: similar to AA sequence:RefSeq:WP_012562742.1
COORDINATES: similar to AA sequence:RefSeq:WP_006470409.1
COORDINATES: protein motif:HMM:NF016829.2
COORDINATES: similar to AA sequence:RefSeq:WP_006470413.1
COORDINATES: similar to AA sequence:RefSeq:WP_006471554.1
COORDINATES: similar to AA sequence:RefSeq:WP_006470870.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472748.1
COORDINATES: similar to AA sequence:RefSeq:WP_005352095.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472360.1
COORDINATES: protein motif:HMM:NF021614.2
COORDINATES: similar to AA sequence:RefSeq:WP_012091100.1
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012562756.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472365.1
COORDINATES: protein motif:HMM:NF017739.2
contractile injection system protein, VgrG/Pvc8 family
COORDINATES: similar to AA sequence:RefSeq:WP_007880798.1
COORDINATES: similar to AA sequence:RefSeq:WP_004430580.1
COORDINATES: similar to AA sequence:RefSeq:WP_018428202.1
COORDINATES: similar to AA sequence:RefSeq:WP_013531536.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756086.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: protein motif:HMM:NF037848.2
COORDINATES: similar to AA sequence:RefSeq:WP_012708979.1
COORDINATES: similar to AA sequence:RefSeq:WP_006471953.1
GO:0004673 - protein histidine kinase activity [Evidence IEA]
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_007881197.1
COORDINATES: similar to AA sequence:RefSeq:WP_014764497.1
GO:0003825 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [Evidence IEA]
alpha,alpha-trehalose-phosphate synthase (UDP-forming)
COORDINATES: protein motif:HMM:TIGR00685.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014626.2
COORDINATES: similar to AA sequence:RefSeq:WP_020810978.1
COORDINATES: similar to AA sequence:RefSeq:WP_018326996.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660076.1
COORDINATES: similar to AA sequence:RefSeq:WP_012091927.1
low affinity iron permease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018902398.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566741.1
COORDINATES: similar to AA sequence:RefSeq:WP_008124512.1
COORDINATES: similar to AA sequence:RefSeq:WP_012386170.1
COORDINATES: similar to AA sequence:RefSeq:WP_006698056.1
COORDINATES: similar to AA sequence:RefSeq:WP_003499610.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879300.1
COORDINATES: similar to AA sequence:RefSeq:WP_014763532.1
COORDINATES: similar to AA sequence:RefSeq:WP_012092156.1
COORDINATES: similar to AA sequence:RefSeq:WP_008040748.1
COORDINATES: similar to AA sequence:RefSeq:WP_014766113.1
COORDINATES: similar to AA sequence:RefSeq:WP_019142632.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_014743887.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019400101.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008122858.1
COORDINATES: similar to AA sequence:RefSeq:WP_007880698.1
COORDINATES: similar to AA sequence:RefSeq:WP_007880699.1
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: similar to AA sequence:RefSeq:WP_010658756.1
COORDINATES: similar to AA sequence:RefSeq:WP_008037581.1
COORDINATES: similar to AA sequence:RefSeq:WP_012092956.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010967933.1
COORDINATES: similar to AA sequence:RefSeq:WP_008935239.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012559182.1
COORDINATES: similar to AA sequence:RefSeq:WP_019859277.1
COORDINATES: similar to AA sequence:RefSeq:WP_003543455.1
COORDINATES: similar to AA sequence:RefSeq:WP_008529994.1
COORDINATES: similar to AA sequence:RefSeq:WP_007773928.1
COORDINATES: similar to AA sequence:RefSeq:WP_007876238.1
COORDINATES: similar to AA sequence:RefSeq:WP_002965715.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010659503.1
GO:0050129 - N-formylglutamate deformylase activity [Evidence IEA]
GO:0019557 - histidine catabolic process to glutamate and formate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009364049.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004690361.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008126384.1
COORDINATES: similar to AA sequence:RefSeq:WP_008836685.1
COORDINATES: similar to AA sequence:RefSeq:WP_010661622.1
COORDINATES: protein motif:HMM:TIGR01414.1
GO:0015474 - autotransporter activity [Evidence IEA]
GO:0046819 - protein secretion by the type V secretion system [Evidence IEA]
autotransporter outer membrane beta-barrel domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006469979.1
GO:0016836 - hydro-lyase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007691268.1
COORDINATES: similar to AA sequence:RefSeq:WP_007813826.1
COORDINATES: similar to AA sequence:RefSeq:WP_005858687.1
COORDINATES: similar to AA sequence:RefSeq:WP_007089759.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005614852.1
COORDINATES: similar to AA sequence:RefSeq:WP_009814287.1
COORDINATES: similar to AA sequence:RefSeq:WP_011537208.1
COORDINATES: protein motif:HMM:NF013757.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007873369.1
COORDINATES: similar to AA sequence:RefSeq:WP_009541962.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010659200.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004117178.1
COORDINATES: similar to AA sequence:RefSeq:WP_018430865.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558319.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016845839.1
COORDINATES: similar to AA sequence:RefSeq:WP_019997435.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008968027.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]
bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007010707.1
COORDINATES: similar to AA sequence:RefSeq:WP_009812846.1
COORDINATES: similar to AA sequence:RefSeq:WP_008836674.1
COORDINATES: similar to AA sequence:RefSeq:WP_008125948.1
COORDINATES: similar to AA sequence:RefSeq:WP_019170989.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_007010711.1
COORDINATES: similar to AA sequence:RefSeq:WP_008125943.1
COORDINATES: similar to AA sequence:RefSeq:WP_018430879.1
COORDINATES: similar to AA sequence:RefSeq:WP_012013961.1
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: similar to AA sequence:RefSeq:WP_018486503.1
COORDINATES: similar to AA sequence:RefSeq:WP_008939932.1
GO:0102039 - NADH-dependent peroxiredoxin activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006956730.1
GO:0016668 - oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor [Evidence IEA]
GO:0009398 - FMN biosynthetic process [Evidence IEA]; GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012116190.1
COORDINATES: similar to AA sequence:RefSeq:WP_008487847.1
COORDINATES: similar to AA sequence:RefSeq:WP_017833569.1
COORDINATES: similar to AA sequence:RefSeq:WP_019483338.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_014238494.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018388905.1
COORDINATES: similar to AA sequence:RefSeq:WP_018388904.1
COORDINATES: similar to AA sequence:RefSeq:WP_019403101.1
COORDINATES: similar to AA sequence:RefSeq:WP_008599026.1
COORDINATES: similar to AA sequence:RefSeq:WP_003531041.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012093381.1
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004111316.1
COORDINATES: similar to AA sequence:RefSeq:WP_010659230.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018184833.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004915940.1
COORDINATES: similar to AA sequence:RefSeq:WP_010659233.1
COORDINATES: similar to AA sequence:RefSeq:WP_010659234.1
COORDINATES: similar to AA sequence:RefSeq:WP_011583263.1
COORDINATES: similar to AA sequence:RefSeq:WP_013663112.1
COORDINATES: similar to AA sequence:RefSeq:WP_014248879.1
COORDINATES: similar to AA sequence:RefSeq:WP_010629519.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398382.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: similar to AA sequence:RefSeq:WP_007634750.1
COORDINATES: similar to AA sequence:RefSeq:WP_017961630.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913257.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517667.1
formylglycine-generating enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750795.1
COORDINATES: protein motif:HMM:NF012371.2
COORDINATES: similar to AA sequence:RefSeq:WP_006725682.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013100.2
COORDINATES: similar to AA sequence:RefSeq:WP_003621417.1
COORDINATES: similar to AA sequence:RefSeq:WP_007880968.1
COORDINATES: similar to AA sequence:RefSeq:WP_009462765.1
COORDINATES: similar to AA sequence:RefSeq:WP_018857172.1
COORDINATES: similar to AA sequence:RefSeq:WP_007701633.1
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
phenylalanine--tRNA ligase beta subunit-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_020813103.1
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: similar to AA sequence:RefSeq:WP_012092306.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887603.1
COORDINATES: similar to AA sequence:RefSeq:WP_017269016.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012649007.1
COORDINATES: similar to AA sequence:RefSeq:WP_012092302.1
COORDINATES: similar to AA sequence:RefSeq:WP_017269019.1
COORDINATES: similar to AA sequence:RefSeq:WP_012648994.1
helix-turn-helix domain-containing protein
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013954352.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: similar to AA sequence:RefSeq:WP_005615654.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_013761356.1
COORDINATES: similar to AA sequence:RefSeq:WP_020289224.1
COORDINATES: similar to AA sequence:RefSeq:WP_003499575.1
COORDINATES: similar to AA sequence:RefSeq:WP_003543699.1
gamma-glutamyltransferase family protein