Pseudochrobactrum algeriensis isolate C130915_07 plasmid pPB07_3, al1l pseudoknot.
type: Entry
definition: Pseudochrobactrum algeriensis isolate C130915_07 plasmid pPB07_3, al1l pseudoknot.
sequence version: NZ_CP075359.1
sequence date: 2023-03-20
sequence: sequence
division: CON
label: NZ_CP075359.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN19040384
keyword: RefSeq
source: Pseudochrobactrum algeriensis
organism: Pseudochrobactrum algeriensis
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Pseudochrobactrum.
reference: 1
references: 35133261
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP075359.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2018\nAssembly Method :: SMRT Analysis v. 2.3.0\nAssembly Name :: C130915_07_PacBio\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:03:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,688\nCDSs (total) :: 3,609\nGenes (coding) :: 3,554\nCDSs (with protein) :: 3,554\nGenes (RNA) :: 79\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 4\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 19 of 55\nPseudo Genes (incomplete) :: 40 of 55\nPseudo Genes (internal stop) :: 8 of 55\nPseudo Genes (multiple problems) :: 10 of 55\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 33605
topology: circular
so has quality: SO_0000988
location: 1..33605
location: region:1-33605:1
RO_0002162: 2834768

NZ_CP075359
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN19040384
type: BioSample
SIO_000068: biosample

1
title: Pseudochrobactrum algeriensis sp. nov., isolated from lymph nodes of Algerian cattle
author: Loperena-Barber, M.
author: Khames, M.
author: Leclercq, S.O.
author: Zygmunt, M.S.
author: Babot, E.D.
author: Zuniga-Ripa, A.
author: Gutierrez, A.
author: Oumouna, M.
author: Moriyon, I.
author: Cloeckaert, A.
author: Conde-Alvarez, R.
journal: Int J Syst Evol Microbiol 72 (2) (2022)
pubmed: 35133261

35133261
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Loperena-Barber, M.
author: Khames, M.
author: Leclercq, S.O.
author: Zygmunt, M.S.
author: Babot, E.D.
author: Zuniga-Ripa, A.
author: Gutierrez, A.
author: Oumouna, M.
author: Moriyon, I.
author: Cloeckaert, A.
author: Conde-Alvarez, R.
journal: Submitted (17-MAY-2021) Unite Infectiologie et Sante Publique, UMR 1282, INRAE - Institut national de recherche pour l'agriculture, l'alimentation et l'environnement, Site de Tours-Nouzilly, Bat. 213, Nouzilly 37380, France

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33605:1
position: 33605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-33605:1:source
so part of: sequence
organism: Pseudochrobactrum algeriensis
mol type: genomic DNA
isolate: C130915_07
isolation source: lymph nodes
host: Bos taurus
type material: type strain of Pseudochrobactrum algeriensis
plasmid: pPB07_3
country: Algeria: Medea
collection date: 2015

2834768
type: Taxonomy
SIO_000068: taxonomy

KHQ09_RS00110
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00110
old locus tag: KHQ09_00110
so part of: sequence
location: 1..1929
location: region:1-1929:1
so has part: feature:1-1929:1:exon
subclass of: SO_0000010

position:1929:1
position: 1929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1929:1:exon

KHQ09_RS00110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00110
old locus tag: KHQ09_00110
inference: COORDINATES: protein motif:HMM:NF015651.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lysylphosphatidylglycerol synthase transmembrane domain-containing protein
translation: MVTTQSILYFAIAVVFLLTAHILRSIRWRVILLKDDIYTRTVPALAALSVGYLINAILPFRLGEITRSAFLSYMARQRFSSIFASVIAERIVDLLVVSVIGLIVFFIYGDAMFVITTILLFIASIAVVLLIHCTRLAKIIVYFFAAIFNDSLKSAILHFFYSVTHLILDGKLIKSFRFWMLTLAMWASYIVSLLSLGHFLSIGFFEAFLEVYSSALNLSWTPSLGETRGWILIYLLAPIAIVVICVVLWEVDILARSRTLLRSLTSMEYFTSEERHSLRSSFWSEQQYVAFLNRRFAGTNDLLANFEDRGLDEVRLHRLFQGGSGAVTALIEVDGQLRVRKFATGEVGAKMTVQRDWLQDNGTRLPLVKILSSQKSGADFLYDMEYIAGSLDMYEGIHASSLEVSKNILKNVIAKMRDFHLSNEVASAEDTDIKAYIHAKVLGNFNVIKEEFQDIVSDGIILLNGEPFDTCSLSIFEDMNWFVQKLSDRRQSAIHGDLTIENIMLLPDSSGGRKPESWFLIDPNPVNGFQSPLIDYAKIMQSLHLGYEALHKRPKASYSDGQLTVGVHRSFQYEALFNETIDQLTVNLGEEGMKQVFIHEWINYLRLIPYQLRHSREAGLAFFGCLCLLLRNFERRYPGELW
SIO_010081: KHQ09_RS00110
subclass of: SO_0000673
so part of: KHQ09_RS00110
location: 1..1929
location: region:1-1929:1
so has part: feature:1-1929:1:exon

WP_213595926.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1929:1:exon

KHQ09_RS00115
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00115
old locus tag: KHQ09_00115
so part of: sequence
location: 1923..2486
location: region:1923-2486:1
so has part: feature:1923-2486:1:exon
subclass of: SO_0000010

position:1923:1
position: 1923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2486:1
position: 2486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1923-2486:1:exon

KHQ09_RS00115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00115
old locus tag: KHQ09_00115
inference: COORDINATES: protein motif:HMM:NF024811.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAD family phosphatase
translation: MVMQAVLVDLDGTLVDTHAANLAAYRQALGETGMAYSSADLSSSVGKMAWRPMLKQVLPLHPDLHERIARRKREIYPTLFDRVRVNKLLVAVLQQLHKTVPIALVTAASRASVTPLLAEKKLDYLFSIVVTSDDTTASKPSPEPFIKAAALLNVGPEDCLVLEDSDVGLAAAQAFGAQTWRIHWLDE
SIO_010081: KHQ09_RS00115
subclass of: SO_0000673
so part of: KHQ09_RS00115
location: 1923..2486
location: region:1923-2486:1
so has part: feature:1923-2486:1:exon

WP_213595928.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1923-2486:1:exon

KHQ09_RS00120
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00120
old locus tag: KHQ09_00120
so part of: sequence
location: complement(2681..3780)
location: region:2681-3780:-1
so has part: feature:2681-3780:-1:exon
subclass of: SO_0000010

position:2681:-1
position: 2681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3780:-1
position: 3780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2681-3780:-1:exon

KHQ09_RS00120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00120
old locus tag: KHQ09_00120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611844.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MKRSRFSDEQIIGMIKEQEAGTPTAQVCRKYGISSASFYKYKAKFGGLEVSDARKLKALEEENAKLKKLLAETMLDNAILKDVAGKKMVTPDARRDAVVHVCQVYAVSQRRACAVLCIDRSSVRYRRKRPDDAPIREAMRQVASERRRFGYRRIHVMLERQGIIMNLKKLRRLYQEEKLTVRKRGGRKRALGTRRPIVLPSRANERWSLDFISDAFTDGRRFRVLAVVDDFTRECLALVPDTSLSGLRLARELDNLVSQLGKPRTIVSDNGTEMTSHAILKWCQETGIEWHYIAPGKPMQNGFVESFNGSFRDECLNETLFSSLAQARTEIKAWKDDYNKNRPHSSLGNATPNEFAIKMALEKRAA
SIO_010081: KHQ09_RS00120
subclass of: SO_0000673
so part of: KHQ09_RS00120
location: complement(join(2681..3528,3528..3780))
location: region:2681-3780:-1
so has part: feature:3528-3780:-1:exon
so has part: feature:2681-3528:-1:exon

WP_213595930.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3528-3780:-1:exon

position:3528:-1
position: 3528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2681-3528:-1:exon

KHQ09_RS00125
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00125
old locus tag: KHQ09_00125
so part of: sequence
location: complement(3878..4507)
location: region:3878-4507:-1
so has part: feature:3878-4507:-1:exon
subclass of: SO_0000010

position:3878:-1
position: 3878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4507:-1
position: 4507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3878-4507:-1:exon

KHQ09_RS00125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00125
old locus tag: KHQ09_00125
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MVATAKTAWNKGRVVGKKPPLTPDQIALIRLLLRQENALRDLALFNVALDTSFRGSDLVRLRVSDVATSSGIREIVEIRQKKTETRNTRPVQARLSSNTCESLRTYLSASEKTLHGWLFTGQGVRWSHAHISESQLWRLFKAWLEKAHIDPSLYGLHSLRRTFPAHIYQQTGNLRAAQLLLGHASIESTKEYIGIEQAEALEIARKYHL
SIO_010081: KHQ09_RS00125
subclass of: SO_0000673
so part of: KHQ09_RS00125
location: complement(3878..4507)
location: region:3878-4507:-1
so has part: feature:3878-4507:-1:exon

WP_213595932.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3878-4507:-1:exon

KHQ09_RS00130
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00130
old locus tag: KHQ09_00130
so part of: sequence
location: complement(4782..5075)
location: region:4782-5075:-1
so has part: feature:4782-5075:-1:exon
subclass of: SO_0000010

position:4782:-1
position: 4782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5075:-1
position: 5075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4782-5075:-1:exon

KHQ09_RS00130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00130
old locus tag: KHQ09_00130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017183790.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSAFESIKKGLDEALEFSKGNEAGSLVHEIILPEIDVAKIRAQTGLSQTDFARSIGVAKGTLLNWEQRRRTPQGPAQVLLALIERKPSVVQDLLGKL
SIO_010081: KHQ09_RS00130
subclass of: SO_0000673
so part of: KHQ09_RS00130
location: complement(4782..5075)
location: region:4782-5075:-1
so has part: feature:4782-5075:-1:exon

WP_213595934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4782-5075:-1:exon

KHQ09_RS00135
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00135
old locus tag: KHQ09_00135
so part of: sequence
location: complement(5072..5413)
location: region:5072-5413:-1
so has part: feature:5072-5413:-1:exon
subclass of: SO_0000010

position:5072:-1
position: 5072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5413:-1
position: 5413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5072-5413:-1:exon

KHQ09_RS00135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00135
old locus tag: KHQ09_00135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017183789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MTKLQTVVELPEFQRRARSIMTDVEREAAITWIATNPEEGISLGGGLRKVRIPREGGGKSGGFRTIYVFGGRHMPIFLITIFAKNEKADLTPKEQAAAVEMSKAIVSMWSNKQ
SIO_010081: KHQ09_RS00135
subclass of: SO_0000673
so part of: KHQ09_RS00135
location: complement(5072..5413)
location: region:5072-5413:-1
so has part: feature:5072-5413:-1:exon

WP_213906491.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5072-5413:-1:exon

KHQ09_RS00140
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00140
old locus tag: KHQ09_00140
so part of: sequence
location: complement(5451..5777)
location: region:5451-5777:-1
so has part: feature:5451-5777:-1:exon
subclass of: SO_0000010

position:5451:-1
position: 5451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5777:-1
position: 5777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5451-5777:-1:exon

KHQ09_RS00140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00140
old locus tag: KHQ09_00140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010687710.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: stability/partitioning determinant
translation: MSKQRTNLGFGDALSDLSAFVPTPKTAPKDKTTEEAAVAAGFVSREPKASEQTKPQRRRRTGRNVQFNIKAKPETIAAFYEIADANGWGLGETLEHAVDLLAKNNNKA
SIO_010081: KHQ09_RS00140
subclass of: SO_0000673
so part of: KHQ09_RS00140
location: complement(5451..5777)
location: region:5451-5777:-1
so has part: feature:5451-5777:-1:exon

WP_238481764.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5451-5777:-1:exon

KHQ09_RS00145
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00145
old locus tag: KHQ09_00145
so part of: sequence
location: complement(5770..6453)
location: region:5770-6453:-1
so has part: feature:5770-6453:-1:exon
subclass of: SO_0000010

position:5770:-1
position: 5770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6453:-1
position: 6453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5770-6453:-1:exon

KHQ09_RS00145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00145
old locus tag: KHQ09_00145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009820269.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPVISFANPKGGAGKTTTALILATQLSESGASVTILDADPERWISQWANLPGKPENISIVSGITEDGIVDQIEEASGKSQFVIIDLEGTASLMVANAIGMSDLVLIPIQGSSMDAKGGAKTIRLIQNQAKMARRVIPHCVVLTRTSAAVRSRALKNVQEQLIQSGIDVCETPIVERAAYRDLFDYGGTLTSLDPSQVSNVDKAMDNARQFAGEVVEKLMQVQGHTDE
SIO_010081: KHQ09_RS00145
subclass of: SO_0000673
so part of: KHQ09_RS00145
location: complement(5770..6453)
location: region:5770-6453:-1
so has part: feature:5770-6453:-1:exon

WP_213595938.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5770-6453:-1:exon

KHQ09_RS00150
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00150
old locus tag: KHQ09_00150
so part of: sequence
location: complement(6958..8010)
location: region:6958-8010:-1
so has part: feature:6958-8010:-1:exon
subclass of: SO_0000010

position:6958:-1
position: 6958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8010:-1
position: 8010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6958-8010:-1:exon

KHQ09_RS00150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00150
old locus tag: KHQ09_00150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008667376.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MVGDNTNLRSPLLPDRMQQGDFFVCDIFDAAPKGDMASMEHPIFSIATKPDRHVRRYENGSNFVEVIPSVKGLATVHDRDVLIYCISQCIAALNEDREVSPTIRFRAYDLLSATNRGTDGRGYEQLKAALERLKGTTITTNIITGGKEEFDGFGLIDRFKIVRETRDGRMQEVEIRLSEWVFNAIRSREVLTLHRDYFRLRKPLERRIYELARKHCGAQKEWRISLGKLQAKCGSSSTEKEFRRLVSNIAKQDEQFEHMPDYAVRIEKDVIIFTNRRMEDVKSHSACFLTIRLDLDTYQEARRAAPGWDVYYLEQTWRSWMLDGGLDAPKNPDKAFIGFCTKWFERRGSP
SIO_010081: KHQ09_RS00150
subclass of: SO_0000673
so part of: KHQ09_RS00150
location: complement(6958..8010)
location: region:6958-8010:-1
so has part: feature:6958-8010:-1:exon

WP_213595940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6958-8010:-1:exon

KHQ09_RS00155
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00155
old locus tag: KHQ09_00155
so part of: sequence
location: complement(8214..10061)
location: region:8214-10061:-1
so has part: feature:8214-10061:-1:exon
subclass of: SO_0000010

position:8214:-1
position: 8214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10061:-1
position: 10061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8214-10061:-1:exon

KHQ09_RS00155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00155
old locus tag: KHQ09_00155
inference: COORDINATES: protein motif:HMM:NF014581.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MNFMLETRHWVTMIIAVILAVSAVIFLPLVVAIYPVATYAFLIVALAVIFDILANATEGRRAPLKVAAWICLLLAALVALMPLKGDFSDMQMTIQAWTNAGWSLPRGIWEGVKRLNRYSALHQQALLISLALGVAVGALAIIIPLGSILNPRIGRNRKSNTGPWQAGWMSPRDIASLASNKTGLPLALHNGKLLRYQKNDAKGWRGGHHLVVSGTRGGKGVSAVIPAIIDHQGPVVVLDIKGENFAVTRRYRQSLGRKVAVLNPFGIIEDSNDQFNPLDYIRLNELGRDVALVADGLVRPEPGDGAHFSEMARQLVTAAIEVVVTQEEPNRRNLIAVADLLLSGNLDTTLEAWVKNKDLVGHRPAQTAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLARSSFDMDDLLDDEVDLFIVVPLDQVDKQAVFMRLFINLVLGTVVRQDGRRKVKAPILLALDEFVRMGRMEQIMNIANVAAGAGVEALFVTQDTGQVEKAYGPNDARSIFGSCITKRVFNLNDIETAEWVARHFGDNTVYSQQIREAKTINEKRDVSYSEQRQKIMTAEQIMGMKTDELLLLVGNRNPLKAKQNIYFKRKNYHGKFDGNPLVL
SIO_010081: KHQ09_RS00155
subclass of: SO_0000673
so part of: KHQ09_RS00155
location: complement(8214..10061)
location: region:8214-10061:-1
so has part: feature:8214-10061:-1:exon

WP_213595942.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8214-10061:-1:exon

KHQ09_RS00160
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00160
old locus tag: KHQ09_00160
so part of: sequence
location: complement(10071..10343)
location: region:10071-10343:-1
so has part: feature:10071-10343:-1:exon
subclass of: SO_0000010

position:10071:-1
position: 10071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10343:-1
position: 10343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10071-10343:-1:exon

KHQ09_RS00160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00160
old locus tag: KHQ09_00160
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHKTQPIDVELEELSKKKTKIDAQIAALDARRHLSQKKDEDRLKWLLGNLVFDRLNADPVLQNIVRRDLPERFTQRDHNRGLWQILFPEQ
SIO_010081: KHQ09_RS00160
subclass of: SO_0000673
so part of: KHQ09_RS00160
location: complement(10071..10343)
location: region:10071-10343:-1
so has part: feature:10071-10343:-1:exon

WP_213595944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10071-10343:-1:exon

KHQ09_RS00165
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
gene: mobQ
locus tag: KHQ09_RS00165
old locus tag: KHQ09_00165
so part of: sequence
location: 10572..11801
location: region:10572-11801:1
so has part: feature:10572-11801:1:exon
subclass of: SO_0000010

position:10572:1
position: 10572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11801:1
position: 11801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10572-11801:1:exon

KHQ09_RS00165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
gene: mobQ
locus tag: KHQ09_RS00165
old locus tag: KHQ09_00165
inference: COORDINATES: protein motif:HMM:NF041496.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIYHLSAKVISRAGGRSSVAAAAYRTAGRLYDDRQGLEHDYSRKSGVIHSEIMVPENAPDWMRDRSQLWNAVEIIEKRRDAQLAREIEVSLPRELDRGQRLELLRGFIEREFVDRGMIADVAVHESKARDGFSQPHAHVMLTMRELTGDGFGKKDRGWNAPDLLLGWREAWARDANIALEHAGRSERIDHRSIDAQRSEAEQQVERARASGQEKLVFEYEKKVIELSREPEPKIGPSANAQEKRGIVTERGSAFRAAQARNAQREELGRKQLELRLELMERGRAFIASARERLDQLWNRAEAALYRIKERVIGGGGRLHADPEHSDFDTRREVVSGRDFKRSEEQTFNAVRERTAPENANQARRDAVLGRERETISIEQESIDRSQEQRESILGRGKSSDRRDPERSR
SIO_010081: KHQ09_RS00165
subclass of: SO_0000673
so part of: KHQ09_RS00165
location: 10572..11801
location: region:10572-11801:1
so has part: feature:10572-11801:1:exon

WP_213595945.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10572-11801:1:exon

KHQ09_RS00170
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00170
old locus tag: KHQ09_00170
so part of: sequence
location: complement(11798..12892)
location: region:11798-12892:-1
so has part: feature:11798-12892:-1:exon
subclass of: SO_0000010

position:11798:-1
position: 11798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12892:-1
position: 12892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11798-12892:-1:exon

KHQ09_RS00170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00170
old locus tag: KHQ09_00170
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKTAQLLVKMSPDLREAFHNYALRHGRSASALIRHLMEDEMRNARMIDMLKPKLLEGQCGPVAEIFDDKGKAYHVKVMPYRTQTILHILDPGCENGIFDLSKVRGGSTLLNKIFSVIDTAYDWNTPSYRQICQELGLDPDFNRPTYKEADKPLVANLERHIKWDAGGEDMRLNELTFDLLDLLRTDQYPEFYAFIKSKQSLDHWSFKVSKSVFENAFNRVDQYRIRSSQPVFTSIDFLPSWEGRGYSASIDLWSLSTCASDGWVPQKYGHLKGVALKPMRFDLAIETVVRRLKDQGVVFLTDIEARDYLNEEGAYWAFQQRSWQCPNGLQPRLPSAAEKLLWRIKHPATPLYDQHIKRIQIQH
SIO_010081: KHQ09_RS00170
subclass of: SO_0000673
so part of: KHQ09_RS00170
location: complement(11798..12892)
location: region:11798-12892:-1
so has part: feature:11798-12892:-1:exon

WP_213595947.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11798-12892:-1:exon

KHQ09_RS00175
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00175
old locus tag: KHQ09_00175
so part of: sequence
location: 13485..14336
location: region:13485-14336:1
so has part: feature:13485-14336:1:exon
subclass of: SO_0000010

position:13485:1
position: 13485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14336:1
position: 14336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13485-14336:1:exon

KHQ09_RS00175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00175
old locus tag: KHQ09_00175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007877378.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MSVDISTADGSHELVIAEPTKGAAVALRDIAEALSKYRLALIFGWQDVAQRYRRSRVGAFWLTLNMAVFIGALGLIFGTLFQSEMREFLPYLCAGVITWSFISTCLAEGCTTFTSSDGIILQVRMPLFTHIMRTVWRNVIIFAHNIVIFPVLLLIFGKMISLNALWAIPGFILLCLNMAWMMLILAVVCARFRDMTQVVTNILQVLFYATPIMWMVKILPDHVSRAFIELNPFYHFIELVRAPLFGSPPSMLDWVFGFSCAIAGWVVAILFFGRYRWRVAYWL
SIO_010081: KHQ09_RS00175
subclass of: SO_0000673
so part of: KHQ09_RS00175
location: 13485..14336
location: region:13485-14336:1
so has part: feature:13485-14336:1:exon

WP_213595950.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13485-14336:1:exon

KHQ09_RS00180
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00180
old locus tag: KHQ09_00180
so part of: sequence
location: 14340..15083
location: region:14340-15083:1
so has part: feature:14340-15083:1:exon
subclass of: SO_0000010

position:14340:1
position: 14340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15083:1
position: 15083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14340-15083:1:exon

KHQ09_RS00180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00180
old locus tag: KHQ09_00180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009207859.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MSLIQLQNVSVEFPIYNSTSRSLKNRVLSIATGGKIERRSDRLVIVRGLDDVSMTFRDGDRVGLIGHNGSGKTTLLRVLSGIYTPTNGSSVIKGHCVSLININLGIDPDATGRENIRLRSAMMGMLPEEIDQQFEKIAEFSGLGEFLDVPFRTYSSGMQLRLAFATSTAVRPEILIMDEWLSTGDEDFKERANARMRELVDSTKILILASHSEDLMRKNCNRIIWLEHGRVKMDGNPDEVLQKYFER
SIO_010081: KHQ09_RS00180
subclass of: SO_0000673
so part of: KHQ09_RS00180
location: 14340..15083
location: region:14340-15083:1
so has part: feature:14340-15083:1:exon

WP_213595952.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14340-15083:1:exon

KHQ09_RS00185
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00185
old locus tag: KHQ09_00185
so part of: sequence
location: 15312..16949
location: region:15312-16949:1
so has part: feature:15312-16949:1:exon
subclass of: SO_0000010

position:15312:1
position: 15312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16949:1
position: 16949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15312-16949:1:exon

KHQ09_RS00185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00185
old locus tag: KHQ09_00185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010658462.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methyltransferase type 11
translation: MANRLKWYGREYSHVKLRRRLANGNGTVWGILCTPHTLFIAKTIADHLAFHGIESEIITGSEKSFNHDFYIVLCAQMFRRLPPANKRIIFQLEQSVSSRWFTKEYIKELNSSIGVLDYSLTNIEFLSKNKIKYPNVHYLPIGVSKDNALIDNIVEKKYDFIFYGDVLSSERRRKFLDKLKEKYSVKICNDLFGNELYANIRQAKAVINIHYYEGALLETPRLCECLSLGVPILSESTVDREEYPEFNGAVQFFEEGSIDSMMTQASRILNNIETVNKNIKDVATLSAARFKFMFDRFLVAIGVIPANVILDESIYLSQPNTFFALSLPETIDRRRALSKSLPDGCKIFDGIRNSLGWIGCGSSFNALSRYALKNNISRLTVIEDDVELPNTFNSILREVNEYLDARKDNWDIFSGLMADVHPDAKVLSVENVNGRIYVTIDKMTSTVFNIYNKSALEILSRWNPLDTDPVTNTIDRYLERQETLRVIVTLPFIAGHKEDATSTLWGFENVRYTPMIAEAQQKIEELVQDWRALQDRSGTTKTEAG
SIO_010081: KHQ09_RS00185
subclass of: SO_0000673
so part of: KHQ09_RS00185
location: 15312..16949
location: region:15312-16949:1
so has part: feature:15312-16949:1:exon

WP_238481765.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15312-16949:1:exon

KHQ09_RS00190
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00190
old locus tag: KHQ09_00190
pseudo: true
so part of: sequence
location: complement(17068..>17229)
location: region:17068-17229:-1
so has part: feature:17068-17229:-1:exon
subclass of: SO_0000010

position:17068:-1
position: 17068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17229:-1
position: 17229
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17068-17229:-1:exon

KHQ09_RS00190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00190
old locus tag: KHQ09_00190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611561.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: KHQ09_RS00190
subclass of: SO_0000673
so part of: KHQ09_RS00190
location: complement(17068..>17229)
location: region:17068-17229:-1
so has part: feature:17068-17229:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17068-17229:-1:exon

KHQ09_RS00195
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00195
old locus tag: KHQ09_00195
so part of: sequence
location: complement(17269..18497)
location: region:17269-18497:-1
so has part: feature:17269-18497:-1:exon
subclass of: SO_0000010

position:17269:-1
position: 17269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18497:-1
position: 18497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17269-18497:-1:exon

KHQ09_RS00195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00195
old locus tag: KHQ09_00195
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MSKTTNKFSPEVRERAIRMVLDHEAEHPSRWAAVSSIATKIGCSPATLHEWVKKTEVNTGKRAGLPSDVAEKMKALERENRELRQANEILRKASAYFCPGGARPPLQTMISFIDEYRSVFGVEPICRLLPIAPSTYYENVAKRLDINRLSVRTRNDISLKIEIRRVFEQNFCVYGVRKVWRQLKREGFDVARCTVARLMRSMGLQGIIRGKPVKTTVSDKTAPCPLDRVNRQFYAPAPNMLWLSDFTYVATWQGFVYVAFVIDAFARRIVGWRTSRTAHTDFVLDALEQAIHDRRPVHRGGLVHHSDRGSQYLSIKYSERLAEAGIEPSVGSVGDSYDNALAETINGLYKAEVIHRRGPWRNFEAVEFATLEWVDWFNNRRLLEPIGNIPPAEAEERYYFMLDEPAWAA
SIO_010081: KHQ09_RS00195
subclass of: SO_0000673
so part of: KHQ09_RS00195
location: complement(join(17269..18209,18209..18497))
location: region:17269-18497:-1
so has part: feature:18209-18497:-1:exon
so has part: feature:17269-18209:-1:exon

WP_213595956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18209-18497:-1:exon

position:18209:-1
position: 18209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:17269-18209:-1:exon

KHQ09_RS00195
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 2834768
locus tag: KHQ09_RS00195
old locus tag: KHQ09_00195
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF01497
inference: COORDINATES: profile:INFERNAL:1.1.4
note: AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: KHQ09_RS00195
subclass of: SO_0000673
so part of: KHQ09_RS00195
location: complement(18100..18216)
location: region:18100-18216:-1
so has part: feature:18100-18216:-1:exon

position:18100:-1
position: 18100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18216:-1
position: 18216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18100-18216:-1:exon

KHQ09_RS00200
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00200
old locus tag: KHQ09_00200
pseudo: true
so part of: sequence
location: complement(<18551..19491)
location: region:18551-19491:-1
so has part: feature:18551-19491:-1:exon
subclass of: SO_0000010

position:18551:-1
position: 18551
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:19491:-1
position: 19491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18551-19491:-1:exon

KHQ09_RS00200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00200
old locus tag: KHQ09_00200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611557.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: KHQ09_RS00200
subclass of: SO_0000673
so part of: KHQ09_RS00200
location: complement(<18551..19491)
location: region:18551-19491:-1
so has part: feature:18551-19491:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18551-19491:-1:exon

KHQ09_RS00210
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00210
old locus tag: KHQ09_00210
so part of: sequence
location: complement(19671..21827)
location: region:19671-21827:-1
so has part: feature:19671-21827:-1:exon
subclass of: SO_0000010

position:19671:-1
position: 19671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21827:-1
position: 21827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19671-21827:-1:exon

KHQ09_RS00210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00210
old locus tag: KHQ09_00210
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF025025.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MRILLVTPEVPRIGGGGIATYSANMMKALSESGHTVNVLSWSVVSNEKTSKEVTSDAMHVNVSVSEVWAKYNAGPQSIAVSHFLLDYILEAISLFESDVLEGTDYLAPLYAYQIAKRNGTLASGLSKPVVIYNHGLQRDIYRCDANIPTEWDRQNIYSERLTLKWADLVINPSNFSYNTLVRQCGNILTSKVIPEPYYFNNKSDFEGIRNNYISLGRTCISKGLDKNIHFLNVIDSINPIDEILFIGKVGYTPFKVSSADDYTLKRLKPSLRGKINITGHLSRDEVAAAINRESEKGYSLNFSPQETFNYAFLELLDNGWLPYSMMNSAMEEFFPKDLQHLLIPEDFNLSTLGAIYEAIQCNHVYGNQIREYAEALTHPDKFSDDYLKAVDPLISSGKTFPAAPRATARASDVTFLMATFNPKEQLLETVSSIKAQTEKGARMLVMSDGSYDAQSLALLDQLNAFDHVRVIHSVANEGLCATRTKLIASCETKLSIFIDDDDLIEDRYLEKTLNVYNKNIIGANAVLTWRRNFGINNHLIINFNMDDYEFFLWNDFRMTSLIDTASLRNVGFIPGMRNGEADDWDFWLRFKEMGYVATILPEDLFRYRYQEGSMSWPWSKGQAELTAELQYKRIIAGLKIGRVADDIVLEMLTSARLTEMEIAPNHSVMEQSDLAAIQRWKFISNAKLQRPVIGRISEFLYRGGSWLARKSTGQSVKH
SIO_010081: KHQ09_RS00210
subclass of: SO_0000673
so part of: KHQ09_RS00210
location: complement(19671..21827)
location: region:19671-21827:-1
so has part: feature:19671-21827:-1:exon

WP_213595960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19671-21827:-1:exon

KHQ09_RS00215
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00215
old locus tag: KHQ09_00215
so part of: sequence
location: 21922..22743
location: region:21922-22743:1
so has part: feature:21922-22743:1:exon
subclass of: SO_0000010

position:21922:1
position: 21922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22743:1
position: 22743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21922-22743:1:exon

KHQ09_RS00215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00215
old locus tag: KHQ09_00215
inference: COORDINATES: protein motif:HMM:NF016145.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polysaccharide pyruvyl transferase family protein
translation: MLSDLLIDRLATLRNQHVFYFPNTGNGGDGFIAHATMWLLNSLSIEFTALGPHEIAPKGSTLLFGGGGNLIENQYDTLYNAIQSNIDGNTGIVLPHTIRDYRNLFSKDNLEIFIRDPISYDNARKYTVDTNQHFYLSHDMTFYLPKDYFQQFWQLGDGVFYCFRQDEERDSDLWVDGNQDISLSWNGSWWTNERLSKASTEAMAASLSPSRIVATDRLHVAILAAFLGKRVYMTANNYYKNEAIYRHSLSRFFPNTSFHKTRQDIVNAIKNKP
SIO_010081: KHQ09_RS00215
subclass of: SO_0000673
so part of: KHQ09_RS00215
location: 21922..22743
location: region:21922-22743:1
so has part: feature:21922-22743:1:exon

WP_213630877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21922-22743:1:exon

KHQ09_RS00220
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
gene: galE
locus tag: KHQ09_RS00220
old locus tag: KHQ09_00220
so part of: sequence
location: 22876..23880
location: region:22876-23880:1
so has part: feature:22876-23880:1:exon
subclass of: SO_0000010

position:22876:1
position: 22876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23880:1
position: 23880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22876-23880:1:exon

KHQ09_RS00220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
gene: galE
locus tag: KHQ09_RS00220
old locus tag: KHQ09_00220
EC number: 5.1.3.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006642845.1
GO function: GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO process: GO:0006012 - galactose metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UDP-glucose 4-epimerase GalE
translation: MNVLVTGGAGFIGTHTCVELLKSNHSILVIDNFENSHPEAIKRVETITGKKVDFKQGDIRDTAFIKNQITDFKCEAVMHFAGLKAVGESCQNPLKYYDYNVAGTLSLLQAMQSCNVKKLVFSSSATVYGAPKRLPITEDMELHTTNPYGRSKLIVEDILRDLYTSDPSWHIAILRYFNPVGAHKSGLIGEDPIGIPNNLMPIVAQVASNRREKLSIWGNDYPTKDGTGIRDYIHIVDLAIGHLKALENLNEAQCNAYNLGTGNGYSVLEVIKMFEHISNQKIEYEIAPRRDGDVAECYADPLYAIQQLGWKAERGLREMCEDMWNWQVKNPSGY
SIO_010081: KHQ09_RS00220
subclass of: SO_0000673
so part of: KHQ09_RS00220
location: 22876..23880
location: region:22876-23880:1
so has part: feature:22876-23880:1:exon

WP_213595965.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22876-23880:1:exon

KHQ09_RS00225
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00225
old locus tag: KHQ09_00225
so part of: sequence
location: 23942..24895
location: region:23942-24895:1
so has part: feature:23942-24895:1:exon
subclass of: SO_0000010

position:23942:1
position: 23942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24895:1
position: 24895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23942-24895:1:exon

KHQ09_RS00225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00225
old locus tag: KHQ09_00225
inference: COORDINATES: protein motif:HMM:NF012745.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 2 protein
translation: MHNIKITILLATYNGADFLNEQLISFVNQSWKNIDLIVSDDGSSDNTLEILNTWKKSWSKGSIQIIKGPRAGHAENFRYLIQAVSDKKTYVAFSDQDDIWHRDKLEVAMSKLISMGKDTPAMYCSRTRLVDVYGNPTGLSPLFTSPPSFTNSLTQSLAGGNTIVFNSAAFSIVRESAMKTKFLHHDWWSYQILTGAGGKVYYDPKPQIDYRQHQNNMFGKNIGYTAILRRIFGLLSGQYSQWIDSNLLALEKCHSLLTEDNQSIVRGLQEARQQGGISCAKFLWKNDIKRQTRMANIGLYVSVLFRRKSTSLRAQGE
SIO_010081: KHQ09_RS00225
subclass of: SO_0000673
so part of: KHQ09_RS00225
location: 23942..24895
location: region:23942-24895:1
so has part: feature:23942-24895:1:exon

WP_213595967.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23942-24895:1:exon

KHQ09_RS00230
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
gene: rfbA
locus tag: KHQ09_RS00230
old locus tag: KHQ09_00230
so part of: sequence
location: 24897..25775
location: region:24897-25775:1
so has part: feature:24897-25775:1:exon
subclass of: SO_0000010

position:24897:1
position: 24897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25775:1
position: 25775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24897-25775:1:exon

KHQ09_RS00230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
gene: rfbA
locus tag: KHQ09_RS00230
old locus tag: KHQ09_00230
EC number: 2.7.7.24
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008122595.1
GO function: GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glucose-1-phosphate thymidylyltransferase RfbA
translation: MKGIILAGGSGTRLFPLTLAISKQMLPVYDKPMIYYPLSTLMLAGIREILIISTPRDLPVFKELLGDGDDFGISLSYAEQEHPNGLAEAFIIGREFIGSDSVAMILGDNIYYGVDLPTLCNQAINQEVGATVFAYHVDDPERYGVVVFDPDTGVARSIEEKPKTPKSNWAVTGLYFYDNDIVNIAANIKPSERGELEITTVNNIYMERGQLRVQRLGRGYAWLDTGTHTSLHEASSFVRTIEHRQGIKIACPEEIGYEMGWLDAEQVLQRASNLGKTEYADYLKRRVAQRAR
SIO_010081: KHQ09_RS00230
subclass of: SO_0000673
so part of: KHQ09_RS00230
location: 24897..25775
location: region:24897-25775:1
so has part: feature:24897-25775:1:exon

WP_213595969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24897-25775:1:exon

KHQ09_RS00235
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
gene: rfbC
locus tag: KHQ09_RS00235
old locus tag: KHQ09_00235
so part of: sequence
location: 25775..26329
location: region:25775-26329:1
so has part: feature:25775-26329:1:exon
subclass of: SO_0000010

position:26329:1
position: 26329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25775-26329:1:exon

KHQ09_RS00235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
gene: rfbC
locus tag: KHQ09_RS00235
old locus tag: KHQ09_00235
EC number: 5.1.3.13
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010975750.1
GO function: GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-4-dehydrorhamnose 3,5-epimerase
translation: MMIVNELAISDVIEIIPDRFGDNRGYFSEVYNKEALERHNISLDFVQDNQSYSARKGVLRGLHYQLPPFAQDKLVRVLQGSILDVAVDIRRNSDTFGKWVALEITAEKGNQILVPKGFAHGFITLKEHTIVAYKVSGYYSAECDRNIRYDDPELAIDWPHLDDELQLSAKDSVAPYLKDAQVFE
SIO_010081: KHQ09_RS00235
subclass of: SO_0000673
so part of: KHQ09_RS00235
location: 25775..26329
location: region:25775-26329:1
so has part: feature:25775-26329:1:exon

WP_213595971.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25775-26329:1:exon

KHQ09_RS00240
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
gene: rfbB
locus tag: KHQ09_RS00240
old locus tag: KHQ09_00240
so part of: sequence
location: 26346..27413
location: region:26346-27413:1
so has part: feature:26346-27413:1:exon
subclass of: SO_0000010

position:26346:1
position: 26346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27413:1
position: 27413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26346-27413:1:exon

KHQ09_RS00240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
gene: rfbB
locus tag: KHQ09_RS00240
old locus tag: KHQ09_00240
EC number: 4.2.1.46
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019857027.1
GO function: GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-glucose 4,6-dehydratase
translation: MNILVTGGAGFIGSAVCRLLVQNPKVRVINVDKLTYAGNLNSLRSIENEPNYKHYRTDICDVNAILTILNDEKIDSIMHLAAESHVDRSIDGPAAFVETNVIGTFRMLSAALNYWRGLAPEKKETFRFHHISTDEVFGDLPFDEGIFTETTPYAPSSPYSASKAASDHFVRAWHETYGLPVVLSNCSNNYGPFHFPEKLIPLVILNALHERELPIYGKGNNVRDWLFVEDHAKALEIVVRQGRVGESYNIGGNEERTNLAVVETICGILDRKRARANNQKYSELIRFVSDRPGHDRRYAIDASKISSELGWKPVQSFESGLEKTIDWYLQNEWWWRPIREQTYTGERLGQNSEAS
SIO_010081: KHQ09_RS00240
subclass of: SO_0000673
so part of: KHQ09_RS00240
location: 26346..27413
location: region:26346-27413:1
so has part: feature:26346-27413:1:exon

WP_213595985.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26346-27413:1:exon

KHQ09_RS00245
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
gene: rfbD
locus tag: KHQ09_RS00245
old locus tag: KHQ09_00245
so part of: sequence
location: 27410..28282
location: region:27410-28282:1
so has part: feature:27410-28282:1:exon
subclass of: SO_0000010

position:27410:1
position: 27410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28282:1
position: 28282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27410-28282:1:exon

KHQ09_RS00245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
gene: rfbD
locus tag: KHQ09_RS00245
old locus tag: KHQ09_00245
EC number: 1.1.1.133
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006312467.1
GO function: GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-4-dehydrorhamnose reductase
translation: MKIAVTGKNGQVVRSLLALADDKTEIIALGRPELDLATPSTIDAVLFAIDPDVIVSAAAYTAVDKAEDEPELAYAVNATGAAAVAETAAKLGIPIIHISTDYVFDGIKSEPYTERDTPNPQSVYGKSKLAGERLVAAANSRHIILRTAWVYSPYGNNFLKTMLRLGSERSEISVVADQHGNPTSAINIATTIITICRKITEEGFSDWGIYHLVDDSETTWFNWAEYMFSCSKMSVIINPINGIDYPSKAQRPKNSRLSTEKLKHTFSCSLPNWKTSTQLIIKKLEAAREN
SIO_010081: KHQ09_RS00245
subclass of: SO_0000673
so part of: KHQ09_RS00245
location: 27410..28282
location: region:27410-28282:1
so has part: feature:27410-28282:1:exon

WP_213595973.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27410-28282:1:exon

KHQ09_RS00250
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00250
old locus tag: KHQ09_00250
pseudo: true
so part of: sequence
location: complement(28439..29630)
location: region:28439-29630:-1
so has part: feature:28439-29630:-1:exon
subclass of: SO_0000010

position:28439:-1
position: 28439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29630:-1
position: 29630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28439-29630:-1:exon

KHQ09_RS00250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00250
old locus tag: KHQ09_00250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611561.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: KHQ09_RS00250
subclass of: SO_0000673
so part of: KHQ09_RS00250
location: complement(28439..29630)
location: region:28439-29630:-1
so has part: feature:28439-29630:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28439-29630:-1:exon

KHQ09_RS00255
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00255
old locus tag: KHQ09_00255
so part of: sequence
location: complement(29717..31315)
location: region:29717-31315:-1
so has part: feature:29717-31315:-1:exon
subclass of: SO_0000010

position:29717:-1
position: 29717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31315:-1
position: 31315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29717-31315:-1:exon

KHQ09_RS00255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00255
old locus tag: KHQ09_00255
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDRVTERPSKKTSNVIIHVLFVVFFVYSILPIALFGTTASEGFEFATTNSINSHYSSAVFDKSGYNYETRPGEFILYRLTKNFLDIDALRIGSVYSLLFYILSLISVMIISYNMKICHPIFVGISFLLLFDYTASSSQVSSSNISTSVLIFGISLLSVFFRKGGAILFVAGVFISALATLFRIDLVFILPVAGLIPLCFNGITLRSITVCIFIIVASYVVSFSIYNAIGINIAEVLLSNGEKISLFQNWAIDQIIATLFPFLLPMALIGTILDTCNSGREYWTRSLARAAFFMGPSILLAFIYSGRMDTPRFLVPAMPFLALAGGISVSAFWTAFTRTWRTALVGFCMIAATITVTWIARTPNYVWDGYRFKYATYATPIKTLLLKSQLNDADKLLNNFMREFPDQDTLFIAASWRLYNAQQRFLILNNWTEKGSRQLVNPPISSANIGCLLYVKESQKLELCLAELGREYKSYQQAEEVLIRLSETYSNIYLLTDPAIIKNNPALQSRTHTILESSNSDWDHYTMLLLRIN
SIO_010081: KHQ09_RS00255
subclass of: SO_0000673
so part of: KHQ09_RS00255
location: complement(29717..31315)
location: region:29717-31315:-1
so has part: feature:29717-31315:-1:exon

WP_213595975.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29717-31315:-1:exon

KHQ09_RS00260
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00260
old locus tag: KHQ09_00260
so part of: sequence
location: 31687..32082
location: region:31687-32082:1
so has part: feature:31687-32082:1:exon
subclass of: SO_0000010

position:31687:1
position: 31687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32082:1
position: 32082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31687-32082:1:exon

KHQ09_RS00260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00260
old locus tag: KHQ09_00260
inference: COORDINATES: protein motif:HMM:NF016060.2
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GtrA family protein
translation: MQAVKFIVFSGLGWLCDFAIFSLLVSTADVSAGLANFISATIAAMAVFIASKLFIFVSRESLGRSTFYYLIYTEANILVWALIIHFITYQLVSLSAFNYSTSALFAKLIVTPFSLLCNFVASRWLSNRRWA
SIO_010081: KHQ09_RS00260
subclass of: SO_0000673
so part of: KHQ09_RS00260
location: 31687..32082
location: region:31687-32082:1
so has part: feature:31687-32082:1:exon

WP_213595977.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31687-32082:1:exon

KHQ09_RS00265
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00265
old locus tag: KHQ09_00265
so part of: sequence
location: 32079..32870
location: region:32079-32870:1
so has part: feature:32079-32870:1:exon
subclass of: SO_0000010

position:32079:1
position: 32079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32870:1
position: 32870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32079-32870:1:exon

KHQ09_RS00265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00265
old locus tag: KHQ09_00265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015437355.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 2 protein
translation: MSSRVLLFIPAYNCEKQIGRVLAQVEAEWCQSVVDQVIVVNNRSTDRTGEVVADHIRGRGDNYVQLLLNNDNYGLGGSHKVAIQYAIQEGYDWVVVLHGDDQGSVADFRSVLLQRDSLSEDAVLGSRFMSGSQTPGYSRFRIFGNHVFNLLYSLCVFRSIKDLGAGLNLYRVSSLKGKSFQNYPDNLTFNCVMVCAQAIDGDQLRFEPISWREDDQVSNVKMIRQSIQTLKIALSALFQRRNFLKRDHRNKTVNSYGWEVIDV
SIO_010081: KHQ09_RS00265
subclass of: SO_0000673
so part of: KHQ09_RS00265
location: 32079..32870
location: region:32079-32870:1
so has part: feature:32079-32870:1:exon

WP_213595979.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32079-32870:1:exon

KHQ09_RS00270
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00270
old locus tag: KHQ09_00270
so part of: sequence
location: 32863..33603
location: region:32863-33603:1
so has part: feature:32863-33603:1:exon
subclass of: SO_0000010

position:32863:1
position: 32863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33603:1
position: 33603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32863-33603:1:exon

KHQ09_RS00270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00270
old locus tag: KHQ09_00270
inference: COORDINATES: protein motif:HMM:NF024214.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NTP transferase domain-containing protein
translation: MSDPVTMIMPMAGRGSRFAAEGETLPKPLIELHEQPFFYWATRGIIDVLPEVQLIYVVLQEHVENFSIDKAVIERFPQAIIHIVPQLTSGALETAMLGLQNISKQSHIIINDCDHAFVYPQIKEACCALSNGTDGFLSHFHSTAPHFSYAQYDSAGWLLQTAEKKVISDSAIAGIYGFKNREVLETAAKIYQGDCPYPELFISGVYNTMVAMTKKVQGFDLSRHVAFGTPEEFRTAVGQLPELYGS
SIO_010081: KHQ09_RS00270
subclass of: SO_0000673
so part of: KHQ09_RS00270
location: 32863..33603
location: region:32863-33603:1
so has part: feature:32863-33603:1:exon

WP_213595981.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32863-33603:1:exon