Pseudochrobactrum algeriensis isolate C130915_07 plasmid pPB07_4, complete sequence.
type: Entry
definition: Pseudochrobactrum algeriensis isolate C130915_07 plasmid pPB07_4, complete sequence.
sequence version: NZ_CP075358.1
sequence date: 2023-03-20
sequence: sequence
division: CON
label: NZ_CP075358.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN19040384
keyword: RefSeq
source: Pseudochrobactrum algeriensis
organism: Pseudochrobactrum algeriensis
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Pseudochrobactrum.
reference: 1
references: 35133261
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP075358.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2018\nAssembly Method :: SMRT Analysis v. 2.3.0\nAssembly Name :: C130915_07_PacBio\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:03:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,688\nCDSs (total) :: 3,609\nGenes (coding) :: 3,554\nCDSs (with protein) :: 3,554\nGenes (RNA) :: 79\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 4\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 19 of 55\nPseudo Genes (incomplete) :: 40 of 55\nPseudo Genes (internal stop) :: 8 of 55\nPseudo Genes (multiple problems) :: 10 of 55\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 21683
topology: circular
so has quality: SO_0000988
location: 1..21683
location: region:1-21683:1
RO_0002162: 2834768

NZ_CP075358
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN19040384
type: BioSample
SIO_000068: biosample

1
title: Pseudochrobactrum algeriensis sp. nov., isolated from lymph nodes of Algerian cattle
author: Loperena-Barber, M.
author: Khames, M.
author: Leclercq, S.O.
author: Zygmunt, M.S.
author: Babot, E.D.
author: Zuniga-Ripa, A.
author: Gutierrez, A.
author: Oumouna, M.
author: Moriyon, I.
author: Cloeckaert, A.
author: Conde-Alvarez, R.
journal: Int J Syst Evol Microbiol 72 (2) (2022)
pubmed: 35133261

35133261
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Loperena-Barber, M.
author: Khames, M.
author: Leclercq, S.O.
author: Zygmunt, M.S.
author: Babot, E.D.
author: Zuniga-Ripa, A.
author: Gutierrez, A.
author: Oumouna, M.
author: Moriyon, I.
author: Cloeckaert, A.
author: Conde-Alvarez, R.
journal: Submitted (17-MAY-2021) Unite Infectiologie et Sante Publique, UMR 1282, INRAE - Institut national de recherche pour l'agriculture, l'alimentation et l'environnement, Site de Tours-Nouzilly, Bat. 213, Nouzilly 37380, France

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21683:1
position: 21683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21683:1:source
so part of: sequence
organism: Pseudochrobactrum algeriensis
mol type: genomic DNA
isolate: C130915_07
isolation source: lymph nodes
host: Bos taurus
type material: type strain of Pseudochrobactrum algeriensis
plasmid: pPB07_4
country: Algeria: Medea
collection date: 2015

2834768
type: Taxonomy
SIO_000068: taxonomy

KHQ09_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00005
old locus tag: KHQ09_00005
so part of: sequence
location: 1..1464
location: region:1-1464:1
so has part: feature:1-1464:1:exon
subclass of: SO_0000010

position:1464:1
position: 1464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1464:1:exon

KHQ09_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00005
old locus tag: KHQ09_00005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020811857.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD-dependent succinate-semialdehyde dehydrogenase
translation: MPPLSLRDQSLLRTDCWLFGGWKAAADGERFSVTNPADGSTIAHVPLLKAPEIEQAIEDAEKAQRAWACLPARVRAGKLRRWFDLLTSNADDLAMILTAEQGKPLTEARNEILYAASFVEWFAEEAKRIYGETIPAPESSQRITVLRQPIGVCAAITPWNFPAAMITRKVAPALAAGSAMIVRPADLTPLTALALAVLAERAEIPRGVLQIVTGDAIGIGAVLTGSDKVRKLSFTGSTEVGRLLMAQCAPTIKKLSLELGGNAPFIVFDDADLDAAVSGAIASKYRNAGQTCVCTNRFLVQRSVVENFSSKLAEQVAHLKVGPGTDASVTIGPLIDERAVAKIEAHITDAVSKGAQVVVGGTRHELGGTYFCPTVITDATSQMRLAREETFGPIAPIFVFDTEDEAIAMANDTEFGLAAYFYTRAHARTVRVAERLDYGMVGHNTGRISNEVAPFGGVKQSGIGREGSRHGIEEYLELKYVCSDVGV
SIO_010081: KHQ09_RS00005
subclass of: SO_0000673
so part of: KHQ09_RS00005
location: 1..1464
location: region:1-1464:1
so has part: feature:1-1464:1:exon

WP_213596008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1464:1:exon

KHQ09_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00010
old locus tag: KHQ09_00010
so part of: sequence
location: complement(1473..2225)
location: region:1473-2225:-1
so has part: feature:1473-2225:-1:exon
subclass of: SO_0000010

position:1473:-1
position: 1473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2225:-1
position: 2225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1473-2225:-1:exon

KHQ09_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00010
old locus tag: KHQ09_00010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010661802.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6118 family protein
translation: MTELDDDREEFSRQVSADEAGDPAAAFDALRQTVEGLAGDLTREMTTIRKGVEAAFEEFDRQGPVQDYKPELAQLVQQLAHVGERLQDVEQSPILKNGPQHYAAALERSGESLVRTAAQQFENESRDFQRVARDLAGHVAGARQRHVQNRFLWIVGAAGVLAGIILTLFLPALLPFSADSHIASLVMGFDRVSAGYAMIGAVDPLEVEKMKWGGRFYNASGREISACLETAKQTGKDQKCTITVPAPLPR
SIO_010081: KHQ09_RS00010
subclass of: SO_0000673
so part of: KHQ09_RS00010
location: complement(1473..2225)
location: region:1473-2225:-1
so has part: feature:1473-2225:-1:exon

WP_213596006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1473-2225:-1:exon

KHQ09_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
gene: traA
locus tag: KHQ09_RS00015
old locus tag: KHQ09_00015
so part of: sequence
location: complement(2237..6040)
location: region:2237-6040:-1
so has part: feature:2237-6040:-1:exon
subclass of: SO_0000010

position:2237:-1
position: 2237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6040:-1
position: 6040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2237-6040:-1:exon

KHQ09_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
gene: traA
locus tag: KHQ09_RS00015
old locus tag: KHQ09_00015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010399291.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Ti-type conjugative transfer relaxase TraA
translation: MAIYHLSMKPVSRAKGRSAVASMAYRAGEKLTNERDGITHDYTTKQGVEHAEIVLPEGVNADWARDRSDLWNVAEFAEKRKDARVAREFEVALPHELSAEQRLEAAREMAQELADRYGAAVDFAIHAPHEASDVRNHHAHILMTTRQVTENGLGDKTYLERENKWLLAHDLPTTDMQLRDLRQRWEGIANERLARAGLDIRIDHRSHMERGLEIEPTEHMGVHATQMDRRGLDVSRARLDEDAARRNAELIREKPEQVLSIITGEKSVFDRLDVARALHRYINDDPQEFRNAFATVMASPALVELQPERADPATGESMSDLGLARYSTREMVKFESGMVASAERMHQARNHGVDRRHVDRAIERQDAAIQRSAGDTSARLSDEQWAAIGHITGPERIAAVVGFAGAGKSTMLAAAREAWEAEGYTVHGAALSGKAAEGLEESSGIQSRTLASYEYGWQADRNQLGRGDVFVIDEAGMIGSRQLSRFVSEAEARGAKIVLVGDHEQLQAIGAGAPFRAIAEQIGHAELSEIRRQRVDWQREASVAFATHRTAEGLAAYREHGDIRFSQSGEDARGEIVRDYLADRDQRPDGTRVAMAHRRADVRAINEGIRSELQERGELARVREADDSLAPGDVASQVDHEQEGPGRALTFQTNDGKRDFATGDRIVFLENNRDLGVKNGMLATVDHVEPGRPGAGPMIIATLDGPKGAEGRSVSVPMGDYQAIDHGYATTIHKNQGATVDRSFVLASGTMDRHLTYVAMTRHRDGAQLYAAHDEFSDRNAGRLVEHGTAPYEHQQGNSQSYFVTLQNDKGQKHTVWGVDLERAVKESGAEVGDKIGLEHHGSEPVRLPDGQMAERNSWKVRDAGELAYSQLENRLSRSGVKETTLDYARDFAERRGVAERMGVSSEIEIPHEREHEKLSLAERGVPASLGIEGGGDEGRDQARAATSTDRLHSPVEKNKGEDLRADSHTDLAVTRDHGERFVNEHDQQKVNQQQRRNPFEGLKLGRGAAIERPQQDRTAEKGPQIEQKAERQRRGMFDGLKLNARPATPQGQAERPEREESLRPAPTQDRLAERARRQSPLEVVVDRYARAYQSADQHLREGLPVLDMQQQELRAAGQQLDQVQPGMKDLMHSTLQNDPETARAMTELSGRERVAQVIGGMKRENAALQDPNVRAERFVERWQDLKAQRQQLRGWQHDEARGKIESQMNGLTKSLERDPQADSILRNRRQELGIGEHLRKGQSIAHELQEEMTRGQRLSRGIGMER
SIO_010081: KHQ09_RS00015
subclass of: SO_0000673
so part of: KHQ09_RS00015
location: complement(2237..6040)
location: region:2237-6040:-1
so has part: feature:2237-6040:-1:exon

WP_213596004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2237-6040:-1:exon

KHQ09_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00020
old locus tag: KHQ09_00020
so part of: sequence
location: 6311..6616
location: region:6311-6616:1
so has part: feature:6311-6616:1:exon
subclass of: SO_0000010

position:6311:1
position: 6311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6616:1
position: 6616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6311-6616:1:exon

KHQ09_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00020
old locus tag: KHQ09_00020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012881263.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mobilization protein
translation: MARKTIEQRLAQLDAQRATLKARLGKQERANDTRRKVLLGALVLHRLENGRDEEFSRRLSEWLKRELPGFLTRNGDKELFADLLGATATGETQGSTGEAGS
SIO_010081: KHQ09_RS00020
subclass of: SO_0000673
so part of: KHQ09_RS00020
location: 6311..6616
location: region:6311-6616:1
so has part: feature:6311-6616:1:exon

WP_213596001.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6311-6616:1:exon

KHQ09_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00025
old locus tag: KHQ09_00025
so part of: sequence
location: 6613..8289
location: region:6613-8289:1
so has part: feature:6613-8289:1:exon
subclass of: SO_0000010

position:6613:1
position: 6613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8289:1
position: 8289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6613-8289:1:exon

KHQ09_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00025
old locus tag: KHQ09_00025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014341994.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MMQAKLAWAAFKNMLRAAVRDPLWGIVALIGLPFRIWQTLLKVLFILIVVLYAVGFGGRFFLEQQGFGPGSIPFIALDLITLLVLAALTFRFITNPLIIHFGDMDGETHGSARFATKKEVAPLTRTDTGLLIGRDGLSKKLLRYDGPAHLLTMAPTRTGKGVGTIIPNLLTADRSVICIDPKGENARIAGRARQQFGPVHILDPFGVTGQPSAAFNPLDQLDPAGLDVAEDASTLADALVFDEPGMAGEAHWNEEAKALIAGMILHIATVEPRDRRTLATLRENLTLAPEIFSALLKEMQRSTAAAGLVARAANRHLGKSDREAAGVLSAAQRHTHFLDSPRMTAVLSRSDFRFADLKRRNATVFLVLPPDRLSTYSRWLRLLVSQSLTDMARTTSTPAVPLATPVLYLLDEFAALGHLAPVERAMGLMAGYGVQLWPILQDVHQLRATYGQRAGTFLSNAGVLQVFGVNDHDSARLVSDLLGQETVVFQTMSRALDAEKSGISYGEQHTARPLLTPDEVRNLPQNLELLFLAGQRPIIAGKLAYYADTEFRGLFDQA
SIO_010081: KHQ09_RS00025
subclass of: SO_0000673
so part of: KHQ09_RS00025
location: 6613..8289
location: region:6613-8289:1
so has part: feature:6613-8289:1:exon

WP_213595992.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6613-8289:1:exon

KHQ09_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00030
old locus tag: KHQ09_00030
so part of: sequence
location: 8301..8690
location: region:8301-8690:1
so has part: feature:8301-8690:1:exon
subclass of: SO_0000010

position:8301:1
position: 8301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8690:1
position: 8690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8301-8690:1:exon

KHQ09_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00030
old locus tag: KHQ09_00030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019200203.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDSDAPEWPDPADKAHAVEQAKRLRNHVNEGGLRFEAYLPPSLALWLLDLIEQGKFLDPSEAVFVILGEHKELAPHADLRRELLKRSIQAAADDSRPGILGDEMKARLREKFKNPLPEPARWENRSRR
SIO_010081: KHQ09_RS00030
subclass of: SO_0000673
so part of: KHQ09_RS00030
location: 8301..8690
location: region:8301-8690:1
so has part: feature:8301-8690:1:exon

WP_213595991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8301-8690:1:exon

KHQ09_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00035
old locus tag: KHQ09_00035
so part of: sequence
location: complement(8814..9032)
location: region:8814-9032:-1
so has part: feature:8814-9032:-1:exon
subclass of: SO_0000010

position:8814:-1
position: 8814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9032:-1
position: 9032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8814-9032:-1:exon

KHQ09_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00035
old locus tag: KHQ09_00035
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAERAETLEKKPSRHFRDFAEMASAQRRLGIMDEASYEKSQRSEAQARGGAIMLACKRVGNPPPAAPTALDN
SIO_010081: KHQ09_RS00035
subclass of: SO_0000673
so part of: KHQ09_RS00035
location: complement(8814..9032)
location: region:8814-9032:-1
so has part: feature:8814-9032:-1:exon

WP_213595989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8814-9032:-1:exon

KHQ09_RS00040
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00040
old locus tag: KHQ09_00040
so part of: sequence
location: complement(9032..9367)
location: region:9032-9367:-1
so has part: feature:9032-9367:-1:exon
subclass of: SO_0000010

position:9367:-1
position: 9367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9032-9367:-1:exon

KHQ09_RS00040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00040
old locus tag: KHQ09_00040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018310970.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MRTRIVNGVEVTTSSGNVFADLGLPDAEKLKMKSGLMIEITKAVRRLDLTQEEAGRRMGLPQPKVSALLRGDFTNLSERKLMECLNRLGYDIEITVKPAADAVGHMTLAVA
SIO_010081: KHQ09_RS00040
subclass of: SO_0000673
so part of: KHQ09_RS00040
location: complement(9032..9367)
location: region:9032-9367:-1
so has part: feature:9032-9367:-1:exon

WP_080921082.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9032-9367:-1:exon

KHQ09_RS00045
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00045
old locus tag: KHQ09_00045
so part of: sequence
location: complement(9348..9725)
location: region:9348-9725:-1
so has part: feature:9348-9725:-1:exon
subclass of: SO_0000010

position:9348:-1
position: 9348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9725:-1
position: 9725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9348-9725:-1:exon

KHQ09_RS00045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00045
old locus tag: KHQ09_00045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010100228.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MNDDERPLEWIGSSYKDLMQLPADVRKFFGFALSFAQQGEQHAAAKVLKGFGGAGVLELVENDAGGTYRAVYTVKFEEAVFVLHCFQKKSKSGIATPKADMDVIRARLKVAEIVAKEMRHENPHR
SIO_010081: KHQ09_RS00045
subclass of: SO_0000673
so part of: KHQ09_RS00045
location: complement(9348..9725)
location: region:9348-9725:-1
so has part: feature:9348-9725:-1:exon

WP_213595987.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9348-9725:-1:exon

KHQ09_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00050
old locus tag: KHQ09_00050
so part of: sequence
location: complement(9813..10133)
location: region:9813-10133:-1
so has part: feature:9813-10133:-1:exon
subclass of: SO_0000010

position:9813:-1
position: 9813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10133:-1
position: 10133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9813-10133:-1:exon

KHQ09_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00050
old locus tag: KHQ09_00050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010661809.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome partitioning protein ParB
translation: MSRKPSLLATAIKTAEQPASAPEAPPEPQRSAPSSQPAGSYVAPSRANKLGRTHFLPPAYWETLDEISFRSRDEKGKRIPKERLVGEALNLLFAKYNYPVVREGDE
SIO_010081: KHQ09_RS00050
subclass of: SO_0000673
so part of: KHQ09_RS00050
location: complement(9813..10133)
location: region:9813-10133:-1
so has part: feature:9813-10133:-1:exon

WP_213596018.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9813-10133:-1:exon

KHQ09_RS00055
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00055
old locus tag: KHQ09_00055
so part of: sequence
location: complement(10130..10789)
location: region:10130-10789:-1
so has part: feature:10130-10789:-1:exon
subclass of: SO_0000010

position:10130:-1
position: 10130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10789:-1
position: 10789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10130-10789:-1:exon

KHQ09_RS00055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00055
old locus tag: KHQ09_00055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010661810.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MITVAFCTQKGGTGKTTIATALAVAAHLAGKKSALLDLDPQTNAVNWFDRRKDDGPDVASIQPGAIRRSLDAYRGLGMDWVFIDTPGKMDSASTEAAKHADIVLVPSQAQIFSIETLEPLKRLLDIAGSPPTFVVLNLVHPNAGGRAVDDAAAIAASFNVKVAPIHVSRLKTYEDAPALGQTPQELEPNGRAAQEVAGLFTFLSEQASMITGNHERMKS
SIO_010081: KHQ09_RS00055
subclass of: SO_0000673
so part of: KHQ09_RS00055
location: complement(10130..10789)
location: region:10130-10789:-1
so has part: feature:10130-10789:-1:exon

WP_080921084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10130-10789:-1:exon

KHQ09_RS00060
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00060
old locus tag: KHQ09_00060
so part of: sequence
location: complement(10868..11521)
location: region:10868-11521:-1
so has part: feature:10868-11521:-1:exon
subclass of: SO_0000010

position:10868:-1
position: 10868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11521:-1
position: 11521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10868-11521:-1:exon

KHQ09_RS00060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00060
old locus tag: KHQ09_00060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010661811.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SprT-like domain-containing protein
translation: MSPANPTAKTYAALNQAVDFFNDRLFGGELPACLVTLQRKNKAYGYFAGGRFGSKDGAEITDEIALNPSHFKSRTDEQSLSTLAHEMAHLWQHHFGKPSRAGYHNKEWAAKMHEIGLHPSDTGQPGGKETGQSCSHYIVEGGRYARVFAELAALPDFTALYVELWDDADARKTRKAKSASKTRYTCPSCELNAWAKPGVRLMCGECSEPMAAAEEAE
SIO_010081: KHQ09_RS00060
subclass of: SO_0000673
so part of: KHQ09_RS00060
location: complement(10868..11521)
location: region:10868-11521:-1
so has part: feature:10868-11521:-1:exon

WP_213596016.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10868-11521:-1:exon

KHQ09_RS00065
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00065
old locus tag: KHQ09_00065
pseudo: true
so part of: sequence
location: complement(11764..12722)
location: region:11764-12722:-1
so has part: feature:11764-12722:-1:exon
subclass of: SO_0000010

position:11764:-1
position: 11764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12722:-1
position: 12722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11764-12722:-1:exon

KHQ09_RS00065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00065
old locus tag: KHQ09_00065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020817827.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
SIO_010081: KHQ09_RS00065
subclass of: SO_0000673
so part of: KHQ09_RS00065
location: complement(11764..12722)
location: region:11764-12722:-1
so has part: feature:11764-12722:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11764-12722:-1:exon

KHQ09_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00070
old locus tag: KHQ09_00070
so part of: sequence
location: complement(12916..13125)
location: region:12916-13125:-1
so has part: feature:12916-13125:-1:exon
subclass of: SO_0000010

position:12916:-1
position: 12916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13125:-1
position: 13125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12916-13125:-1:exon

KHQ09_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00070
old locus tag: KHQ09_00070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017502925.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MSRTAIPVKEKVAAHRERLKAAGRIYVNTDLPADLVARLDQIKEAKGVSSRAPIIEEALRFYIENAPRT
SIO_010081: KHQ09_RS00070
subclass of: SO_0000673
so part of: KHQ09_RS00070
location: complement(12916..13125)
location: region:12916-13125:-1
so has part: feature:12916-13125:-1:exon

WP_025031070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12916-13125:-1:exon

KHQ09_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00075
old locus tag: KHQ09_00075
so part of: sequence
location: complement(13215..16217)
location: region:13215-16217:-1
so has part: feature:13215-16217:-1:exon
subclass of: SO_0000010

position:13215:-1
position: 13215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16217:-1
position: 16217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13215-16217:-1:exon

KHQ09_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00075
old locus tag: KHQ09_00075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010399252.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MPVSFLTEDQVRRYGRFADEPTSDQLVRYFYLDDADRAFVAEHRGDRNRLGVAVQLGSVRLLGVFLEDLATAPASAVGYAAEQLGLNDPGAIFAYANDRARWRHIPRIRARYGYRSVTDPGVSFRLSRFLYALCWTGTDRPSALFDRAVSFLLANKVLLPGLSVLERTVSRVRARANARLFRRLVDKVTPEQRERLDALVVVPEGVRQSPLDRLRDGPYIQSGPEISRALARLDEIRVITEGLPEIDRLPPGRINALARFASAAKAQAVARLPDDRRTATLLAFIRTLEASASDDVIDLFDVVTTTIFSNAQAASREARLRSLRDLDAAALKLRDAAAVLFDEATPDAEVRAVIFETVGRDLLKTAYDRVGALAEPPDDVYFAELRKHRGQFRFAPALLRGLDLDAAPAGRSLLDAVEHVRALQDGVKRSGPAPAAFAPKEWIGQLKAADGKIDLFGYRLCVLDQLRRTIRRRDVFASRSLRYADPRKGLLSGAAWEAARPAVCRTVGVSASADEELTRLSTRLDLAYRETADRAPANPALSFETTAGGVDLSVAQLDKIEEPPSLVALRTEIETRLPHVDLPELILEIQARTGFAEHFTHASEGGSRAEDIATSVSAVLLAEACNTGFEPLVRRDSPALRRSRLSWVKQNFLRAETLTAANAALVAAQNAVPLARSWGGGEVASADGLRFVVPVRTIHSGPNPHYFGHERGVTWYNLASDQYTGLNAITIPGTLRDSLYLLALVLEQETELSPTEIMTDTAGYTDTIFGIFHLLGYQFSPRIADIGGSRFWRVDRKADYGLLDGLAANRINVRLIADHWDDLLRLAGSLKLGVVRAAGLTRTLQTNDRPMKLARALQELGRLIKTLYLLRFIDDESYRRRILIQLNRGENRHRLARVIFHGKRGELRQRYRDGQEDQLGSLGLVVNVVVLWNTIYMDAALNQLRAEGYEVKSEDVAHLSPLSFGHINMLGRYAFTLPEIIARGELRPLRDPRTAGIDDL
SIO_010081: KHQ09_RS00075
subclass of: SO_0000673
so part of: KHQ09_RS00075
location: complement(13215..16217)
location: region:13215-16217:-1
so has part: feature:13215-16217:-1:exon

WP_109614749.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13215-16217:-1:exon

KHQ09_RS00080
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00080
old locus tag: KHQ09_00080
so part of: sequence
location: complement(16226..16834)
location: region:16226-16834:-1
so has part: feature:16226-16834:-1:exon
subclass of: SO_0000010

position:16226:-1
position: 16226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16834:-1
position: 16834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16226-16834:-1:exon

KHQ09_RS00080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00080
old locus tag: KHQ09_00080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010399250.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLIGYMRVSTAEQSLDLQRDALEKAGCRKIYEDVCSGRATERPGLAQALDTAREGDTLVIWKLDRIGRSLPHVVGLVGELQKQGIGLKVLTGDVDTTTATGRLVFGIFATLAEFERDLIHERTMAGLAAARARGRAGGRPRMMTRPKLKTAMAMMADRENSARDVATQLGVSLSTLYAYVDSKGQPRPRAADLLKKRSVAAK
SIO_010081: KHQ09_RS00080
subclass of: SO_0000673
so part of: KHQ09_RS00080
location: complement(16226..16834)
location: region:16226-16834:-1
so has part: feature:16226-16834:-1:exon

WP_056103234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16226-16834:-1:exon

KHQ09_RS00085
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00085
old locus tag: KHQ09_00085
so part of: sequence
location: 16985..17377
location: region:16985-17377:1
so has part: feature:16985-17377:1:exon
subclass of: SO_0000010

position:16985:1
position: 16985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17377:1
position: 17377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16985-17377:1:exon

KHQ09_RS00085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00085
old locus tag: KHQ09_00085
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPDTDHRPNVPDLPPEDKMGFAVPKTPAHSLMLLNRYMRTDMLQHIHVRLHKMRDENEPGSPLHHMAKSLEQVIGTWDGINLVECFTRNHLHIDPDYEFRPEQDYLHDIRLMKHHLKCHRSTIKELDRWR
SIO_010081: KHQ09_RS00085
subclass of: SO_0000673
so part of: KHQ09_RS00085
location: 16985..17377
location: region:16985-17377:1
so has part: feature:16985-17377:1:exon

WP_109614750.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16985-17377:1:exon

KHQ09_RS00090
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00090
old locus tag: KHQ09_00090
so part of: sequence
location: complement(17602..18201)
location: region:17602-18201:-1
so has part: feature:17602-18201:-1:exon
subclass of: SO_0000010

position:17602:-1
position: 17602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18201:-1
position: 18201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17602-18201:-1:exon

KHQ09_RS00090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00090
old locus tag: KHQ09_00090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010399276.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTDRPASDAGRVFIGYARVSTRGQDLGQQRAALGAAGCVRIFEEKASGTKRDRPELARMLDHLRAGDVVTITRLDRLARSTGDLLAIAERIKEAGAGLRSLAEPWADTTTPAGRMVLTVFAGIADFERSLIVERTSAGRIAAKARGVRFGPSPALSAEQIAHARQLIHEDKKPVAEIARLFGVHRATLYRALDGAASES
SIO_010081: KHQ09_RS00090
subclass of: SO_0000673
so part of: KHQ09_RS00090
location: complement(17602..18201)
location: region:17602-18201:-1
so has part: feature:17602-18201:-1:exon

WP_080921075.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17602-18201:-1:exon

KHQ09_RS00095
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00095
old locus tag: KHQ09_00095
so part of: sequence
location: complement(18327..19235)
location: region:18327-19235:-1
so has part: feature:18327-19235:-1:exon
subclass of: SO_0000010

position:18327:-1
position: 18327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19235:-1
position: 19235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18327-19235:-1:exon

KHQ09_RS00095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00095
old locus tag: KHQ09_00095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014216582.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha/beta hydrolase
translation: MASKESAVLGEMYKTWVATMAERPDMTMEETRRMFEHWGDVTAEPGDVDYIEVVANGVPCLWAKPKDGNESRALLCAHGGGYLVGSRYSHRKMFAHIAKAVGCPALIVDYRRSPEHLHPIPVNDCTDAYEWLLKQGIKPEHIAFTGDSAGGALAITTVLCARDRGLPLPVASMPISPWTDMEITGSTVTTNEAKDHFVKRAVIEHMSAGFLGEGGNRKDPLATPLYADLSSLPPFYVQVGGDETLLDDSRRFVEKVRQAGGEVKFDIYPEMQHVFHFLAGTAPEADKAIADQAAWVKPKLGL
SIO_010081: KHQ09_RS00095
subclass of: SO_0000673
so part of: KHQ09_RS00095
location: complement(18327..19235)
location: region:18327-19235:-1
so has part: feature:18327-19235:-1:exon

WP_213596014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18327-19235:-1:exon

KHQ09_RS00100
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00100
old locus tag: KHQ09_00100
so part of: sequence
location: complement(19318..20673)
location: region:19318-20673:-1
so has part: feature:19318-20673:-1:exon
subclass of: SO_0000010

position:19318:-1
position: 19318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20673:-1
position: 20673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19318-20673:-1:exon

KHQ09_RS00100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00100
old locus tag: KHQ09_00100
EC number: 1.-.-.-
inference: COORDINATES: protein motif:HMM:NF012656.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acyl-CoA dehydrogenase family protein
translation: MDILERMHNPGADGRGGYKLLEPRQKYNLAFCSEEEIGIAEHFREFVNTELMPYRHDIEGGWHRDGKLAKETIHRLYAKLVDFGVTKAILPVKYGGPGFSPVVRQMINEELSRADIGLATKVGKLHWAISVMVAAGRDDLLEEFAPKIAGEEAWTACFAITEPAGGANVEDPALAYKTLNTVAREDGDHYVIKGHKLWPGPSGPAENFQSEHLKGHLGYWVVAVTDPAGGEENAGIFYVPADASGLEFSQPYEKMGFCYAEANTDIWFNDVRIPKRYRIDTEPGQGSKLIKGYVIGLGRLAGAARLTGLSEAVLETCMDWTQNRIIAGKPMRERSLFAATLAEMWRSIEVSRQYYLSITAQVTRPEMYGSPWEAQMKAKFSAARSLAGDTAMMVTNRAMQLMGSAGYAYESHIEKYMRDYKIVQMWLGGAERDRMDMAQGLFGPFKWAGDN
SIO_010081: KHQ09_RS00100
subclass of: SO_0000673
so part of: KHQ09_RS00100
location: complement(19318..20673)
location: region:19318-20673:-1
so has part: feature:19318-20673:-1:exon

WP_213596012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19318-20673:-1:exon

KHQ09_RS00105
type: Gene
subclass of: SO_0000704
RO_0002162: 2834768
locus tag: KHQ09_RS00105
old locus tag: KHQ09_00105
so part of: sequence
location: complement(20740..21519)
location: region:20740-21519:-1
so has part: feature:20740-21519:-1:exon
subclass of: SO_0000010

position:20740:-1
position: 20740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21519:-1
position: 21519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20740-21519:-1:exon

KHQ09_RS00105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2834768
locus tag: KHQ09_RS00105
old locus tag: KHQ09_00105
inference: COORDINATES: protein motif:HMM:NF013757.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IclR family transcriptional regulator
translation: MLIEVQEKKLVPALERGSRLLDFVANAAERPTLTDIARELDLPKSSAHGLCNTLTALGLLRRNSDQTFQIGPHVMRWANSFTRETNVVKEFAEIWDRESFLPGATVTLSVMEAGEVVYVAARNSGAIAGFNFRIGMRLPAPFTATGKCFLSFFSEAEIHALFRDGLPSPMTSRSVQDLPSLFSQLQRVRVQGFSIDNQEVADGMICVGAPILNANDHPIASIAVSLLSDALTTEQLNDVAASVREVACLMSRRMGAAKY
SIO_010081: KHQ09_RS00105
subclass of: SO_0000673
so part of: KHQ09_RS00105
location: complement(20740..21519)
location: region:20740-21519:-1
so has part: feature:20740-21519:-1:exon

WP_272491704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20740-21519:-1:exon