Pseudochrobactrum algeriensis isolate C130915_07 plasmid pPB07_4, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Pseudochrobactrum.
Pseudochrobactrum algeriensis sp. nov., isolated from lymph nodes of Algerian cattle
Submitted (17-MAY-2021) Unite Infectiologie et Sante Publique, UMR 1282, INRAE - Institut national de recherche pour l'agriculture, l'alimentation et l'environnement, Site de Tours-Nouzilly, Bat. 213, Nouzilly 37380, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP075358.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2018\nAssembly Method :: SMRT Analysis v. 2.3.0\nAssembly Name :: C130915_07_PacBio\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:03:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,688\nCDSs (total) :: 3,609\nGenes (coding) :: 3,554\nCDSs (with protein) :: 3,554\nGenes (RNA) :: 79\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 4\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 19 of 55\nPseudo Genes (incomplete) :: 40 of 55\nPseudo Genes (internal stop) :: 8 of 55\nPseudo Genes (multiple problems) :: 10 of 55\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudochrobactrum algeriensis
COORDINATES: similar to AA sequence:RefSeq:WP_020811857.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_010661802.1
COORDINATES: similar to AA sequence:RefSeq:WP_010399291.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_012881263.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341994.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019200203.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018310970.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010100228.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010661809.1
COORDINATES: similar to AA sequence:RefSeq:WP_010661810.1
COORDINATES: similar to AA sequence:RefSeq:WP_010661811.1
COORDINATES: similar to AA sequence:RefSeq:WP_020817827.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017502925.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010399252.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010399250.1
COORDINATES: similar to AA sequence:RefSeq:WP_010399276.1
COORDINATES: similar to AA sequence:RefSeq:WP_014216582.1
COORDINATES: protein motif:HMM:NF012656.2
COORDINATES: protein motif:HMM:NF013757.2