Nocardiopsis changdeensis strain Mg02 plasmid unnamed4, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.
Submitted (04-MAY-2021) School of Life Science, Hunan University of Science and Technology, Keda Road, Xiangtan, Hunan 411201, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP074136.1.\nBacteria and source DNA available from Gao Jian.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. v. 3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 120.0x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/02/2023 14:56:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,671\nCDSs (total) :: 6,588\nGenes (coding) :: 6,534\nCDSs (with protein) :: 6,534\nGenes (RNA) :: 83\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 65\nncRNAs :: 3\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 54\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 18 of 55\nPseudo Genes (incomplete) :: 36 of 55\nPseudo Genes (internal stop) :: 2 of 55\nPseudo Genes (multiple problems) :: 2 of 55\nCRISPR Arrays :: 15\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Nocardiopsis changdeensis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015513.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025200.2
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: protein motif:HMM:NF024062.2
COORDINATES: similar to AA sequence:RefSeq:WP_017545822.1
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_017619863.1
COORDINATES: protein motif:HMM:NF013122.2
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: similar to AA sequence:RefSeq:WP_017602310.1
COORDINATES: protein motif:HMM:NF019976.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
nuclease-related domain-containing protein
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014909854.1
COORDINATES: protein motif:HMM:NF040183.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024970.2
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF024952.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012901.2
Scr1 family TA system antitoxin-like transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017610989.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017563370.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017563371.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017563372.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074370.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022432.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01552.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: protein motif:HMM:TIGR02547.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-E CRISPR-associated protein Cse1/CasA
type I-E CRISPR-associated protein Cse2/CasB
COORDINATES: similar to AA sequence:RefSeq:WP_017588914.1
GO:0003676 - nucleic acid binding [Evidence IEA]
OB-fold nucleic acid binding domain-containing protein
COORDINATES: protein motif:HMM:NF013855.2
COORDINATES: protein motif:HMM:NF015620.2
COORDINATES: similar to AA sequence:RefSeq:WP_019608959.1