Nocardiopsis changdeensis strain Mg02 plasmid unnamed3, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.
Submitted (04-MAY-2021) School of Life Science, Hunan University of Science and Technology, Keda Road, Xiangtan, Hunan 411201, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP074135.1.\nBacteria and source DNA available from Gao Jian.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. v. 3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 120.0x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/02/2023 14:56:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,671\nCDSs (total) :: 6,588\nGenes (coding) :: 6,534\nCDSs (with protein) :: 6,534\nGenes (RNA) :: 83\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 65\nncRNAs :: 3\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 54\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 18 of 55\nPseudo Genes (incomplete) :: 36 of 55\nPseudo Genes (internal stop) :: 2 of 55\nPseudo Genes (multiple problems) :: 2 of 55\nCRISPR Arrays :: 15\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Nocardiopsis changdeensis
COORDINATES: similar to AA sequence:RefSeq:WP_014137945.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013133774.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017606823.1
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: similar to AA sequence:RefSeq:WP_017541970.1
COORDINATES: similar to AA sequence:RefSeq:WP_013153091.1
COORDINATES: similar to AA sequence:RefSeq:WP_017584301.1
COORDINATES: protein motif:HMM:NF024991.2