Leptospira weilii strain CUDO6 plasmid pDO6, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Leptospirales; Leptospiraceae; Leptospira.
Submitted (04-JUN-2019) Veterinary Microbiology, Chulalongkorn University, Henri-Dunant, Bangkok 10330, Thailand
REFSEQ INFORMATION: The reference sequence is identical to\nCP040842.1.\nBacteria and source DNA available from Nuvee Prapasarakul.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 23-APR-2019\nAssembly Method :: Canu v. 1.7; Unicycler v. 0.4.4\nAssembly Name :: DO6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30.0x\nSequencing Technology :: Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 01:28:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,975\nCDSs (total) :: 3,931\nGenes (coding) :: 3,738\nCDSs (with protein) :: 3,738\nGenes (RNA) :: 44\nrRNAs :: 1, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 2, 2 (5S, 16S, 23S)\ntRNAs :: 37\nncRNAs :: 2\nPseudo Genes (total) :: 193\nCDSs (without protein) :: 193\nPseudo Genes (ambiguous residues) :: 0 of 193\nPseudo Genes (frameshifted) :: 136 of 193\nPseudo Genes (incomplete) :: 118 of 193\nPseudo Genes (internal stop) :: 36 of 193\nPseudo Genes (multiple problems) :: 81 of 193\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002764797.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004500364.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_004500363.1
COORDINATES: protein motif:HMM:NF033580.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004465950.1
COORDINATES: similar to AA sequence:RefSeq:WP_002121507.1
SpvB/TcaC N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002121505.1
COORDINATES: similar to AA sequence:RefSeq:WP_004497733.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004500361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004471666.1
COORDINATES: similar to AA sequence:RefSeq:WP_002105534.1
COORDINATES: similar to AA sequence:RefSeq:WP_004466835.1
COORDINATES: similar to AA sequence:RefSeq:WP_004499440.1
DUF1016 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004445266.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004468744.1
COORDINATES: similar to AA sequence:RefSeq:WP_017808349.1
COORDINATES: similar to AA sequence:RefSeq:WP_004499441.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016757608.1
histidine kinase N-terminal 7TM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004768189.1
COORDINATES: similar to AA sequence:RefSeq:WP_002187159.1
COORDINATES: similar to AA sequence:RefSeq:WP_016759771.1
COORDINATES: similar to AA sequence:RefSeq:WP_004497894.1
COORDINATES: similar to AA sequence:RefSeq:WP_004497902.1
COORDINATES: similar to AA sequence:RefSeq:WP_004499339.1
polymorphic toxin-type HINT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004497508.1
COORDINATES: similar to AA sequence:RefSeq:WP_016761555.1
COORDINATES: similar to AA sequence:RefSeq:WP_002105555.1
COORDINATES: similar to AA sequence:RefSeq:WP_004497722.1
COORDINATES: similar to AA sequence:RefSeq:WP_004499340.1
LA_2444/LA_4059 family outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_016758958.1
COORDINATES: similar to AA sequence:RefSeq:WP_004497730.1
COORDINATES: similar to AA sequence:RefSeq:WP_002101782.1
COORDINATES: similar to AA sequence:RefSeq:WP_001089277.1
COORDINATES: similar to AA sequence:RefSeq:WP_004497719.1
COORDINATES: protein motif:HMM:TIGR01784.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004497746.1
COORDINATES: similar to AA sequence:RefSeq:WP_002975840.1
COORDINATES: similar to AA sequence:RefSeq:WP_004763269.1
COORDINATES: protein motif:HMM:NF024975.2
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016758347.1
COORDINATES: similar to AA sequence:RefSeq:WP_002107424.1
COORDINATES: similar to AA sequence:RefSeq:WP_015683059.1
COORDINATES: similar to AA sequence:RefSeq:WP_017860897.1
COORDINATES: similar to AA sequence:RefSeq:WP_016753941.1
COORDINATES: similar to AA sequence:RefSeq:WP_004501641.1
type I restriction enzyme HsdR N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004499720.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611655.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004475672.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004500217.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196288.1
type II toxin-antitoxin system HigB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004497509.1
COORDINATES: similar to AA sequence:RefSeq:WP_010577051.1
COORDINATES: similar to AA sequence:RefSeq:WP_000443825.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004497507.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611486.1
COORDINATES: similar to AA sequence:RefSeq:WP_017863803.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000639168.1
COORDINATES: similar to AA sequence:RefSeq:WP_004499329.1
COORDINATES: similar to AA sequence:RefSeq:WP_010576337.1
COORDINATES: similar to AA sequence:RefSeq:WP_001181765.1
COORDINATES: similar to AA sequence:RefSeq:WP_004496206.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010577030.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_000370531.1
COORDINATES: similar to AA sequence:RefSeq:WP_002749284.1
COORDINATES: protein motif:HMM:NF037830.2
COORDINATES: similar to AA sequence:RefSeq:WP_010514840.1
COORDINATES: similar to AA sequence:RefSeq:WP_004494992.1
COORDINATES: similar to AA sequence:RefSeq:WP_000196757.1
COORDINATES: similar to AA sequence:RefSeq:WP_002063579.1
COORDINATES: similar to AA sequence:RefSeq:WP_014801227.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_077143899.1
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004497754.1
COORDINATES: similar to AA sequence:RefSeq:WP_004507699.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004500375.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_004500367.1
COORDINATES: similar to AA sequence:RefSeq:WP_017851486.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_076611748.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016754378.1
COORDINATES: similar to AA sequence:RefSeq:WP_002746319.1
COORDINATES: similar to AA sequence:RefSeq:WP_004497897.1
COORDINATES: similar to AA sequence:RefSeq:WP_004500350.1