Haloterrigena alkaliphila strain KZCA68 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.
Haloterrigena sp. nov., isolated from a saline lake in Tibet(Cui,H.-L.)
Submitted (27-SEP-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP084320.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 240.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/02/2023 00:44:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,203\nCDSs (total) :: 4,144\nGenes (coding) :: 4,068\nCDSs (with protein) :: 4,068\nGenes (RNA) :: 59\nrRNAs :: 3, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 76\nCDSs (without protein) :: 76\nPseudo Genes (ambiguous residues) :: 0 of 76\nPseudo Genes (frameshifted) :: 29 of 76\nPseudo Genes (incomplete) :: 50 of 76\nPseudo Genes (internal stop) :: 17 of 76\nPseudo Genes (multiple problems) :: 15 of 76\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Haloterrigena alkaliphila
COORDINATES: similar to AA sequence:RefSeq:WP_012945988.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008158979.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895548.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013880503.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261548.1
GO:0008483 - transaminase activity [Evidence IEA]
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012946009.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015300177.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142607.1
COORDINATES: similar to AA sequence:RefSeq:WP_017343376.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004267856.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006431313.1
COORDINATES: similar to AA sequence:RefSeq:WP_014051960.1
COORDINATES: similar to AA sequence:RefSeq:WP_008367665.1
GO:0004540 - RNA nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008848261.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091113.1
COORDINATES: similar to AA sequence:RefSeq:WP_005559009.1
GO:0004765 - shikimate kinase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006067339.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159046.1
COORDINATES: similar to AA sequence:RefSeq:WP_006663988.1
COORDINATES: similar to AA sequence:RefSeq:WP_008526532.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091118.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_006184310.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006091120.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008158994.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895525.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091105.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007140921.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007109271.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261557.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006068076.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006184486.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091095.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895512.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946022.1
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006184482.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946024.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880527.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109263.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453217.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_006184477.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650398.1
monovalent cation/H+ antiporter subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_012946030.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422992.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067402.1
(2Fe-2S) ferredoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006179561.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007140468.1
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012946036.1
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006222 - UMP biosynthetic process [Evidence IEA]
quinone-dependent dihydroorotate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012946037.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158764.1
GO:0004038 - allantoinase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006431464.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895494.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895493.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006179573.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946043.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179575.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109246.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895651.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895650.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261589.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091062.1
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0120225 - coenzyme A binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946050.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091060.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006091059.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895644.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946054.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946055.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067372.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863792.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946058.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091051.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895636.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946061.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946062.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946064.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179771.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431234.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091043.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179444.1
GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946069.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012946070.1
2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_008895623.1
COORDINATES: similar to AA sequence:RefSeq:WP_005577296.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: protein motif:HMM:NF024854.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006091037.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895618.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895616.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091009.1
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006649403.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946079.1
COORDINATES: similar to AA sequence:RefSeq:WP_008164826.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_006091001.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067229.1
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261527.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946084.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090983.1
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895607.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322412.1
peptidase M10A and M12B matrixin and adamalysin
COORDINATES: similar to AA sequence:RefSeq:WP_008895605.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946089.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895603.1
GO:0003825 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006090973.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006184412.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179638.1
COORDINATES: similar to AA sequence:RefSeq:WP_006109647.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090964.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090963.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946097.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895595.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261511.1
PGF-CTERM sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012946100.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650950.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013880481.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090953.1
protein sorting system archaetidylserine decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_007981487.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261502.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825217.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012946107.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946116.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090932.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261491.1
COORDINATES: protein motif:HMM:NF024927.2
COORDINATES: similar to AA sequence:RefSeq:WP_012943656.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005575596.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109225.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090911.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090907.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453299.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067264.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090900.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006431438.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261477.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895567.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895566.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863602.1
COORDINATES: similar to AA sequence:RefSeq:WP_009733223.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967559.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946131.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090889.1
COORDINATES: similar to AA sequence:RefSeq:WP_008425439.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261677.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261676.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214691.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863628.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_008425418.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007142911.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895555.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015322573.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109216.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158975.1