Nitrogeniibacter aestuarii strain H1-1-2A plasmid unnamed, complete sequence.
Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Zoogloeaceae; Nitrogeniibacter.
Description of Nitrogenibacter aestuarii sp. nov, a novel nitrogen-fixing bacterium affiliated to the Zoogloeaceae, isolated from a Spartina alterniflora sediment and a foam plastic in mangrove
Submitted (01-MAR-2021) College of Marine and Food Sciences, Quanzhou Normal University, Donghai Road 398, Quanzhou, Fujian Province 361000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP071322.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2020\nAssembly Method :: HGAP v. 4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100X\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 09:18:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,441\nCDSs (total) :: 4,374\nGenes (coding) :: 4,348\nCDSs (with protein) :: 4,348\nGenes (RNA) :: 67\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 4\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 5 of 26\nPseudo Genes (incomplete) :: 20 of 26\nPseudo Genes (internal stop) :: 5 of 26\nPseudo Genes (multiple problems) :: 4 of 26\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Nitrogeniibacter aestuarii
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF021637.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF006039.0
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020474.2
TIGR03761 family integrating conjugative element protein
COORDINATES: protein motif:HMM:NF022645.2
STY4526/YPO1902 family pathogenicity island replication protein
COORDINATES: protein motif:HMM:TIGR03764.1
COORDINATES: similar to AA sequence:RefSeq:WP_011795771.1
COORDINATES: protein motif:HMM:NF019153.2
COORDINATES: protein motif:HMM:TIGR03748.1
COORDINATES: similar to AA sequence:RefSeq:WP_011236068.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: protein motif:HMM:TIGR03747.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
TIGR03747 family integrating conjugative element membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_008296035.1
RAQPRD family integrative conjugative element protein
COORDINATES: protein motif:HMM:TIGR03750.1
TIGR03750 family conjugal transfer protein
COORDINATES: protein motif:HMM:TIGR03746.1
GO:0005575 - cellular_component [Evidence IEA]
TIGR03746 family integrating conjugative element protein
COORDINATES: protein motif:HMM:TIGR03749.1
TIGR03749 family integrating conjugative element protein
COORDINATES: protein motif:HMM:TIGR03752.1
TIGR03752 family integrating conjugative element protein
COORDINATES: protein motif:HMM:TIGR03751.1
TIGR03751 family conjugal transfer lipoprotein
COORDINATES: similar to AA sequence:RefSeq:WP_019042345.1
COORDINATES: protein motif:HMM:TIGR03755.1
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024498.2
COORDINATES: protein motif:HMM:NF019152.2
TIGR03757 family integrating conjugative element protein
COORDINATES: protein motif:HMM:TIGR03756.1
TIGR03756 family integrating conjugative element protein
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015435034.1
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: protein motif:HMM:NF024278.2
COORDINATES: similar to AA sequence:RefSeq:WP_011512180.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020653525.1
COORDINATES: similar to AA sequence:RefSeq:WP_018079442.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00608.1
COORDINATES: similar to AA sequence:RefSeq:WP_006216179.1
COORDINATES: similar to AA sequence:RefSeq:WP_000958195.1
COORDINATES: similar to AA sequence:RefSeq:WP_015002801.1
COORDINATES: protein motif:HMM:NF023108.2
COORDINATES: protein motif:HMM:NF023523.2
COORDINATES: similar to AA sequence:RefSeq:WP_009242144.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein