Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cronobacter.
Genomic characterization of Mexican Cronobacter sakazakii strains
Submitted (20-FEB-2020) Evolutionary Genomics Program, Center for Genomic Sciences, National Autonomous University of Mexico (UNAM), Av. Universidad s/n Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
REFSEQ INFORMATION: The reference sequence is identical to\nCP049260.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: unicycler v. 3.11.0\nAssembly Name :: CS-931\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 687x\nSequencing Technology :: PacBio Sequel, Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 02:48:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,225\nCDSs (total) :: 4,107\nGenes (coding) :: 4,051\nCDSs (with protein) :: 4,051\nGenes (RNA) :: 118\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 12\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 18 of 56\nPseudo Genes (incomplete) :: 35 of 56\nPseudo Genes (internal stop) :: 8 of 56\nPseudo Genes (multiple problems) :: 4 of 56\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007706040.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_007706046.1
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_015690583.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007854376.1
omptin family outer membrane protease Cpa
COORDINATES: similar to AA sequence:RefSeq:WP_007705721.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007727715.1
COORDINATES: similar to AA sequence:RefSeq:WP_007854381.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998932.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998933.1
COORDINATES: similar to AA sequence:RefSeq:WP_013096847.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011998934.1
COORDINATES: similar to AA sequence:RefSeq:WP_007780760.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007798731.1
COORDINATES: similar to AA sequence:RefSeq:WP_012815775.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011998937.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004189638.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998940.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
ABC transporter six-transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007854412.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011998941.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998942.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014332944.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998944.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387233.1
COORDINATES: similar to AA sequence:RefSeq:YP_005226372.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387234.1
COORDINATES: similar to AA sequence:RefSeq:WP_007854451.1
GO:0071468 - cellular response to acidic pH [Evidence IEA]
biofilm development regulator YmgB/AriR family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007780726.1
COORDINATES: similar to AA sequence:RefSeq:WP_007854457.1
COORDINATES: similar to AA sequence:RefSeq:WP_012815787.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873161.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015387237.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007854473.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873167.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998954.1
COORDINATES: similar to AA sequence:RefSeq:WP_007705788.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798782.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007854483.1
COORDINATES: similar to AA sequence:RefSeq:WP_007854484.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015387240.1
COORDINATES: similar to AA sequence:RefSeq:WP_007727571.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798797.1
COORDINATES: similar to AA sequence:RefSeq:WP_007854495.1
COORDINATES: similar to AA sequence:RefSeq:WP_007780683.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_007798802.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387242.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_011998966.1
COORDINATES: similar to AA sequence:RefSeq:WP_007854507.1
GO:0015379 - potassium:chloride symporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007873203.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007873204.1
COORDINATES: similar to AA sequence:RefSeq:WP_007780670.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_015387245.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007873206.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873218.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015741066.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006178108.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:YP_005227577.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:YP_005227549.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_000553779.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_007873258.1
type VI secretion system lipoprotein TssJ
COORDINATES: similar to AA sequence:RefSeq:WP_011998990.1
thiol:disulfide interchange protein DsbG
COORDINATES: similar to AA sequence:RefSeq:WP_015387252.1
protein-disulfide reductase DsbD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007705868.1
COORDINATES: similar to AA sequence:RefSeq:WP_007780653.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873263.1
COORDINATES: similar to AA sequence:RefSeq:NP_309899.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767577.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873266.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007873268.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011999001.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387259.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007854575.1
COORDINATES: similar to AA sequence:RefSeq:WP_011999004.1
COORDINATES: similar to AA sequence:RefSeq:WP_011999005.1
COORDINATES: similar to AA sequence:RefSeq:WP_012815829.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007854589.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873284.1
COORDINATES: similar to AA sequence:RefSeq:WP_012815836.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387265.1
COORDINATES: similar to AA sequence:RefSeq:WP_007854603.1
GO:0008892 - guanine deaminase activity [Evidence IEA]
GO:0006147 - guanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007896783.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007780998.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873298.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873301.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012815845.1
COORDINATES: similar to AA sequence:RefSeq:WP_011999014.1
GO:0015444 - P-type magnesium transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005224890.1
COORDINATES: similar to AA sequence:RefSeq:WP_007854613.1
COORDINATES: similar to AA sequence:RefSeq:WP_007887724.1
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017802039.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015387273.1
GO:0047470 - (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011999019.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
malto-oligosyltrehalose trehalohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_007873333.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015740474.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015387276.1
COORDINATES: similar to AA sequence:RefSeq:WP_007706017.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873344.1
GO:0019290 - siderophore biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007887706.1
COORDINATES: similar to AA sequence:RefSeq:WP_011999026.1
IucA/IucC family siderophore biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_007669613.1
COORDINATES: similar to AA sequence:RefSeq:WP_003859533.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007887696.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387283.1
COORDINATES: similar to AA sequence:RefSeq:WP_003855844.1