Cronobacter sakazakii strain CS-931 plasmid pCsaCS931a, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cronobacter.
Genomic characterization of two Cronobacter sakazakii strains isolated from feces
Submitted (17-MAR-2020) Evolutionary Genomics Program, Center for Genomic Sciences, National Autonomous University of Mexico (UNAM), Av. Universidad s/n Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
Submitted (22-FEB-2018) Evolutionary Genomics Program, Center for Genomic Sciences, National Autonomous University of Mexico (UNAM), Av. Universidad s/n Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
REFSEQ INFORMATION: The reference sequence is identical to\nCP027108.2.\nBacteria available from Submitting center.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Spades v. 3.11.0\nAssembly Name :: CS-931\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 651.04\nSequencing Technology :: PacBio RSII; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 02:48:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,225\nCDSs (total) :: 4,107\nGenes (coding) :: 4,051\nCDSs (with protein) :: 4,051\nGenes (RNA) :: 118\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 12\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 18 of 56\nPseudo Genes (incomplete) :: 35 of 56\nPseudo Genes (internal stop) :: 8 of 56\nPseudo Genes (multiple problems) :: 4 of 56\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:YP_005220858.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005220859.1
COORDINATES: protein motif:HMM:NF037096.2
COORDINATES: similar to AA sequence:RefSeq:YP_005220862.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002211779.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220879.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220880.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005220889.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220897.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:YP_005220898.1
COORDINATES: similar to AA sequence:RefSeq:WP_001291061.1
COORDINATES: similar to AA sequence:RefSeq:WP_004109890.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220903.1
COORDINATES: similar to AA sequence:RefSeq:WP_001711142.1
COORDINATES: similar to AA sequence:RefSeq:WP_016051708.1
COORDINATES: similar to AA sequence:RefSeq:WP_016051707.1
COORDINATES: similar to AA sequence:RefSeq:WP_016051706.1
COORDINATES: similar to AA sequence:RefSeq:WP_000594283.1
COORDINATES: similar to AA sequence:RefSeq:WP_006812532.1
COORDINATES: similar to AA sequence:RefSeq:WP_006812533.1
COORDINATES: similar to AA sequence:RefSeq:WP_016051696.1
COORDINATES: similar to AA sequence:RefSeq:WP_016529521.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598351.1
COORDINATES: similar to AA sequence:RefSeq:WP_006812544.1
COORDINATES: protein motif:HMM:NF016362.2
COORDINATES: similar to AA sequence:RefSeq:WP_000216690.1
COORDINATES: similar to AA sequence:RefSeq:WP_007901009.1
TerB family tellurite resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_000872126.1
COORDINATES: similar to AA sequence:RefSeq:WP_004109944.1
COORDINATES: similar to AA sequence:RefSeq:WP_006812546.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000262979.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220927.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015704849.1
COORDINATES: similar to AA sequence:RefSeq:WP_000099879.1
COORDINATES: protein motif:HMM:NF016435.2
COORDINATES: similar to AA sequence:RefSeq:WP_004109987.1
COORDINATES: protein motif:HMM:NF024911.2
COORDINATES: similar to AA sequence:RefSeq:YP_005220934.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005220933.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005220943.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014962289.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220808.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:YP_005220809.1
COORDINATES: similar to AA sequence:RefSeq:WP_001404454.1
COORDINATES: similar to AA sequence:RefSeq:WP_004110038.1
COORDINATES: similar to AA sequence:RefSeq:WP_001404456.1
COORDINATES: protein motif:HMM:NF012381.2
COORDINATES: similar to AA sequence:RefSeq:WP_002356281.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220827.1
COORDINATES: similar to AA sequence:RefSeq:WP_006812570.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001717306.1
COORDINATES: similar to AA sequence:RefSeq:WP_001717309.1
phosphate starvation-inducible protein PhoH
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:YP_005220854.1