Terrisporobacter hibernicus strain MCA3 plasmid unnamed, complete sequence.
type: Entry
definition: Terrisporobacter hibernicus strain MCA3 plasmid unnamed, complete sequence.
sequence version: NZ_CP081136.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP081136.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN17935209
keyword: RefSeq
source: Terrisporobacter hibernicus
organism: Terrisporobacter hibernicus
taxonomy: Bacteria; Bacillota; Clostridia; Eubacteriales; Peptostreptococcaceae; Terrisporobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP081136.1.\nBacteria and source DNA available from UCD Centre for Food Safety.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2021\nAssembly Method :: Trycycler v. v0.4.1\nAssembly Name :: T. hibernicus\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 17:46:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,037\nCDSs (total) :: 3,904\nGenes (coding) :: 3,876\nCDSs (with protein) :: 3,876\nGenes (RNA) :: 133\nrRNAs :: 12, 12, 12 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 12, 12 (5S, 16S, 23S)\ntRNAs :: 93\nncRNAs :: 4\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 9 of 28\nPseudo Genes (incomplete) :: 19 of 28\nPseudo Genes (internal stop) :: 6 of 28\nPseudo Genes (multiple problems) :: 6 of 28\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 21696
topology: circular
so has quality: SO_0000988
location: 1..21696
location: region:1-21696:1
RO_0002162: 2813371

NZ_CP081136
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN17935209
type: BioSample
SIO_000068: biosample

1
title: Terrisporobacter hibernicus sp. nov., isolated from bovine faeces in Northern Ireland
author: Mitchell, M.
author: Nguyen, S.V.
author: Connor, M.
author: Fairley, D.J.
author: Donoghue, O.
author: Marshall, H.
author: Koolman, L.
author: McMullan, G.
author: Schaffer, K.E.
author: McGrath, J.W.
author: Fanning, S.
journal: Int J Syst Evol Microbiol 73 (1) (2023)

2
title: Direct Submission
author: Mitchell, M.K.
author: Nguyen, S.V.
journal: Submitted (11-AUG-2021) Centre for Food Safety, University College Dublin, UCD Centre for Food Safety, College of Health and Agricultral Sciences, R1.25, Science Centre South, Dublin, Leinster D04 V1W8, Ireland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21696:1
position: 21696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21696:1:source
so part of: sequence
organism: Terrisporobacter hibernicus
mol type: genomic DNA
strain: MCA3
isolation source: feces
host: bovine
type material: type strain of Terrisporobacter hibernicus
plasmid: unnamed
country: United Kingdom: County Antrim
collection date: 2019-10-19

2813371
type: Taxonomy
SIO_000068: taxonomy

JW646_RS20010
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
gene: prdC
locus tag: JW646_RS20010
old locus tag: JW646_19990
so part of: sequence
location: complement(join(21124..21696,1..894))
location: region:1-21696:-1
so has part: feature:1-894:-1:exon
so has part: feature:21124-21696:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21696:-1
position: 21696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-894:-1:exon

position:894:-1
position: 894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:21124-21696:-1:exon

position:21124:-1
position: 21124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

JW646_RS20010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
gene: prdC
locus tag: JW646_RS20010
old locus tag: JW646_19990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018590498.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: proline reductase-associated electron transfer protein PrdC
translation: MGLQKILLRQHVGAPCEAVVKVGDKVKKGTLIAKPTGLGANIFSSVYGNISEITEDAIIIEKDEEQLEEFIKLEGDDKLQLIKDAGVVGMGGAGFPTAIKLGTKVKYILVNAAECEPLLHHNVDQMVDNTDMTVRGLKYVMEICQAEKGIFALKAKNQKAVDALVEGTKGDDSLDIHLLPDIYPMGEERAVVREVLGILLQPTDLPSVADAVVINVETLQRVAEAIELKKPCFSKNVTVVGKLKGGTEPHVFMDVPVGTSVKELIERAGGIDGEYGEVIMGGPFTGKACELEAPITKTTGGIIVTQPFEDLKGEKMGLLVCACGGNEERMQDLAKKMNAEVVCVQKCKQAADVKGNLKCENPGNCPGQALKVMNIKKAGAKHILIGNCTDCSNTVMGSAPKMNIEVHHQTDTVLKTVGKDVIRYMTASKTVPQLGEEVVEEVKTQSVEQPKAETVETVETNFASFTDEGGLVINLKEGKDIRVEFVID
SIO_010081: JW646_RS20010
subclass of: SO_0000673
so part of: JW646_RS20010
location: complement(join(21124..21696,1..894))
location: region:1-21696:-1
so has part: feature:1-894:-1:exon
so has part: feature:21124-21696:-1:exon

WP_228417415.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-894:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:21124-21696:-1:exon

JW646_RS20015
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
locus tag: JW646_RS20015
old locus tag: JW646_19995
so part of: sequence
location: complement(1072..1169)
location: region:1072-1169:-1
so has part: feature:1072-1169:-1:exon
subclass of: SO_0000663

position:1072:-1
position: 1072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1169:-1
position: 1169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1072-1169:-1:exon

JW646_RS20015
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2813371
locus tag: JW646_RS20015
old locus tag: JW646_19995
product: tRNA-Sec
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(1132..1134),aa:Sec,seq:tca)
SIO_010081: JW646_RS20015
subclass of: SO_0000673
so part of: JW646_RS20015
location: complement(1072..1169)
location: region:1072-1169:-1
so has part: feature:1072-1169:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1072-1169:-1:exon

JW646_RS20020
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
gene: prdD
locus tag: JW646_RS20020
old locus tag: JW646_20000
so part of: sequence
location: 1568..2332
location: region:1568-2332:1
so has part: feature:1568-2332:1:exon
subclass of: SO_0000010

position:1568:1
position: 1568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2332:1
position: 2332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1568-2332:1:exon

JW646_RS20020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
gene: prdD
locus tag: JW646_RS20020
old locus tag: JW646_20000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018590499.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: proline reductase cluster protein PrdD
translation: MSEEINLRRLVIKSYHINEVEFGEENNVFLDGKLIVCKDMLKDLIESEPLIKDINIQIIKPGEHDRFTNTMMDIIPISTKVLGKIGEGITHTLTGVYVMLTGVDVNGIQTAEFGSSEGNLKEQLFLNRPGTPGDNDYIISFDVTLDEGQGQVRPGPTAAHRACDKFCNEFRAKLKKLNGHKFTERHEFYDKVRPGKKKVVIIKQVAGQGAMYDTGLFSHEPSAMEGGRSIIDMGNVPMIVTPNEYRDGALRCMC
SIO_010081: JW646_RS20020
subclass of: SO_0000673
so part of: JW646_RS20020
location: 1568..2332
location: region:1568-2332:1
so has part: feature:1568-2332:1:exon

WP_228417416.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1568-2332:1:exon

JW646_RS20025
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
locus tag: JW646_RS20025
old locus tag: JW646_20005
so part of: sequence
location: 2345..2815
location: region:2345-2815:1
so has part: feature:2345-2815:1:exon
subclass of: SO_0000010

position:2345:1
position: 2345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2815:1
position: 2815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2345-2815:1:exon

JW646_RS20025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
locus tag: JW646_RS20025
old locus tag: JW646_20005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018590500.1
GO function: GO:0050485 - oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycine/sarcosine/betaine reductase component B subunit
translation: MGIGPSTKETTLHHFRDPLLDVVSNDEDIDLLGIIVVGTPQDNEDKNFVGTRAASWAEAMRADGAILSCDGWGNSHVDFANTVEQVATRGIPVVGLTFVGTVAQFVVVNEYMDTIVDMNKNPEGIESEIVGENEVTELEAKKALAFLKLKMRKYGK
SIO_010081: JW646_RS20025
subclass of: SO_0000673
so part of: JW646_RS20025
location: 2345..2815
location: region:2345-2815:1
so has part: feature:2345-2815:1:exon

WP_074920415.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2345-2815:1:exon

JW646_RS20030
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
locus tag: JW646_RS20030
old locus tag: JW646_20010
so part of: sequence
location: complement(3732..3968)
location: region:3732-3968:-1
so has part: feature:3732-3968:-1:exon
subclass of: SO_0000010

position:3732:-1
position: 3732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3968:-1
position: 3968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3732-3968:-1:exon

JW646_RS20030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
locus tag: JW646_RS20030
old locus tag: JW646_20010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018590501.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3343 domain-containing protein
translation: MREKQLRLIVTFNTTTGAMAMEKACKSENVPGRLIPVPRQISAGCGLSWLCNKEDKEKVESLINNNNLDFQNIHEIVM
SIO_010081: JW646_RS20030
subclass of: SO_0000673
so part of: JW646_RS20030
location: complement(3732..3968)
location: region:3732-3968:-1
so has part: feature:3732-3968:-1:exon

WP_074920414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3732-3968:-1:exon

JW646_RS20035
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
locus tag: JW646_RS20035
old locus tag: JW646_20015
so part of: sequence
location: complement(4010..5146)
location: region:4010-5146:-1
so has part: feature:4010-5146:-1:exon
subclass of: SO_0000010

position:4010:-1
position: 4010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5146:-1
position: 5146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4010-5146:-1:exon

JW646_RS20035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
locus tag: JW646_RS20035
old locus tag: JW646_20015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018590502.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminotransferase class V-fold PLP-dependent enzyme
translation: MIYLDNAATTMKKPQCVIDAVVNAMTHMGNAGRGANEASLDASRIIYDTREKISDLVNLKNPSRVAFTCNSTESLNTAIKGILTNKDHAITTSLEHNSVLRPLYELEEKGMELSVVQCDENGNINYDDFEKLIKENTKAIVCTHASNLVGNVLDVKKIGQIAKKHNLVFIVDASQSAGVFPIDMQDMNIDILCFTGHKGLLGPQGTGGLCVREGINVRPLKVGGSGVNTFSKTQPEAMPTILEAGTLNGHAIAGLNAALDYLKEEGIENIQKREEELMFRFYNGIKDIKDIKIYGNFENKRAAIVAFNIGDIDSAAFSDELSLYHDISTRPGAHCAPLMHKAMNTVEQGAVRFSFSHYNTEEEIDTAINAVKEIASSY
SIO_010081: JW646_RS20035
subclass of: SO_0000673
so part of: JW646_RS20035
location: complement(4010..5146)
location: region:4010-5146:-1
so has part: feature:4010-5146:-1:exon

WP_228417417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4010-5146:-1:exon

JW646_RS20040
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
locus tag: JW646_RS20040
old locus tag: JW646_20020
so part of: sequence
location: complement(5162..6055)
location: region:5162-6055:-1
so has part: feature:5162-6055:-1:exon
subclass of: SO_0000010

position:5162:-1
position: 5162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6055:-1
position: 6055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5162-6055:-1:exon

JW646_RS20040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
locus tag: JW646_RS20040
old locus tag: JW646_20020
inference: COORDINATES: protein motif:HMM:NF040786.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: selenium metabolism-associated LysR family transcriptional regulator
translation: MNLKQLESFTLIIESRSFSQAAKKLFLTQPTISSHISLLEKELNTQLLIRTTKDVHPTEDGKKLYVYAKQILNVQNTIFQEFNVKSEGSNLLTLGASTIPEQYILPEVLPKYIRKNKSELKILQGDSSEVINQIINKEVEVGLVGTEMENSSLIFEPFYKDKLVIITPVNDKYMKMKEEGFHVSDLLKEPIIMREEGSGTRKEIREFLKAHNFDINNLNVIATLNSIEAIKKSVQNNMGISIVSNLSLEDFATDNKVLVFEFEEMDMYRNLYIVRNKEMYMSKCALKFIKFIREFFN
SIO_010081: JW646_RS20040
subclass of: SO_0000673
so part of: JW646_RS20040
location: complement(5162..6055)
location: region:5162-6055:-1
so has part: feature:5162-6055:-1:exon

WP_187359334.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5162-6055:-1:exon

JW646_RS20045
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
gene: selB
locus tag: JW646_RS20045
old locus tag: JW646_20025
so part of: sequence
location: complement(6057..7964)
location: region:6057-7964:-1
so has part: feature:6057-7964:-1:exon
subclass of: SO_0000010

position:6057:-1
position: 6057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7964:-1
position: 7964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6057-7964:-1:exon

JW646_RS20045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
gene: selB
locus tag: JW646_RS20045
old locus tag: JW646_20025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005339037.1
GO function: GO:0003746 - translation elongation factor activity [Evidence IEA]
GO process: GO:0001514 - selenocysteine incorporation [Evidence IEA]; GO:0006414 - translational elongation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: selenocysteine-specific translation elongation factor
translation: MKNIIIGTAGHIDHGKTALIRALTGKETDRWEEEKRRGITIDLGFTNFDLPSGDRAGIIDVPGHEKFVNNMLAGVIGMDLVMLVVAADEGMMPQTREHVDIMSQLGVEKSIVVLNKCDLVDDEWKELVKEEIKEELIGSVFENANMIEVSSVTGEGIDNLIQEIVHMTKDEVTEKDINTIPRLPIDRSFSISGFGTIVTGTLISGSIKKDDELEIYPTGQKAKIRSIQVHGKDVKECFAGQRSAINISNLKKDEIKRGYVLAPPNSMEDTMMLDVKLNVLNSSERILSNRCRLHLFTGTSEVLCRAVLLDVQEAAPGDSCYAQLRLEEKIAVRRGDKFIVRFYSPLETVGGGVILDANPTKKTPFNNAQLEEIKRKEEGSHSDIVELLVKKHPEMITIKEIGKLTGLSIEEVNECIDELKEENLVLTYEMKKDIYVYHSSEEMRLKRETMEFVKSFHNENPYKFGVGKSLLKTKLYSKIKQNVFDQIIYKFILENEIKKYKEYLSLNNFEINKDKTFQNVEKILVNTYKKAEFDFVRLNEINFNTDESIVRDVLNILIDEEKIVKINEEMFTLKSLMDKAEIIVREKLEQDNLITISQLRDALNTSRKSAKPMLEYFDNMKITRKNGSESERVAY
SIO_010081: JW646_RS20045
subclass of: SO_0000673
so part of: JW646_RS20045
location: complement(6057..7964)
location: region:6057-7964:-1
so has part: feature:6057-7964:-1:exon

WP_228417418.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6057-7964:-1:exon

JW646_RS20050
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
gene: selA
locus tag: JW646_RS20050
old locus tag: JW646_20030
so part of: sequence
location: complement(8117..9514)
location: region:8117-9514:-1
so has part: feature:8117-9514:-1:exon
subclass of: SO_0000010

position:8117:-1
position: 8117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9514:-1
position: 9514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8117-9514:-1:exon

JW646_RS20050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
gene: selA
locus tag: JW646_RS20050
old locus tag: JW646_20030
EC number: 2.9.1.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018590487.1
GO function: GO:0004125 - L-seryl-tRNASec selenium transferase activity [Evidence IEA]
GO process: GO:0016260 - selenocysteine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: L-seryl-tRNA(Sec) selenium transferase
translation: MNKNMLFRNIPKVDVLLEKTEIINLIEKYHRDVVVDAIREEIDKLRNFIKENDDMSLIEEKINCLVENIALNVKKVYSYNLRKVINGTGTILHTNLGRAIISKKHADYLSEVVTSYSNLEYNLEEGKRGERYSHFEKLICKITGAECAMAVNNNAAAVMLVLSSMAENKEVVVSRGELVEVGGKFRIPDVMKTSKAELVEIGTTNKTHLEDYEDAITENTGAFLKVHTSNFKILGFTESVSIDELCKLGKEKDIPVIEDIGSGVLVDLSKYGLEYEPTVQDSIKAGVDIVSFSGDKLLGGPQAGIIVGKKKYIDKMKKNPLTRAFRIDKFTATILEMIFHEYLNEEEAIKNIPALSLITKDIKEIEENANKLYRKLNDIKDVAHVEIKDTLSQIGGGSLPAERIKSKCVTIIPKNISTASLEEKLRFGENPVVGRISEDKLILDMRTVLEDDIEILSQKIIDVLK
SIO_010081: JW646_RS20050
subclass of: SO_0000673
so part of: JW646_RS20050
location: complement(8117..9514)
location: region:8117-9514:-1
so has part: feature:8117-9514:-1:exon

WP_148558570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8117-9514:-1:exon

JW646_RS20055
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
gene: selD
locus tag: JW646_RS20055
old locus tag: JW646_20035
so part of: sequence
location: complement(9580..10629)
location: region:9580-10629:-1
so has part: feature:9580-10629:-1:exon
subclass of: SO_0000010

position:9580:-1
position: 9580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10629:-1
position: 10629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9580-10629:-1:exon

JW646_RS20055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
gene: selD
locus tag: JW646_RS20055
old locus tag: JW646_20035
EC number: 2.7.9.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012159590.1
GO function: GO:0004756 - selenide, water dikinase activity [Evidence IEA]
GO process: GO:0001887 - selenium compound metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl except: (pos:complement(10582..10584),aa:Sec)
transl table: 11
product: selenide, water dikinase SelD
translation: MTEDIKLTHMTKTAGUAAKIGPGTLAQVLGNLPKFHDENLLVGVETSDDAAIYKVSDDLALIQTLDFFTPIVDDPYLFGQIAAANSLSDVYAMGGEPKTALNIVGFPNCLDPKILGRILEGGASKVMESGAILAGGHSIQDDEPKYGLSVTGFVNPQKIFKNYGSKPGDVIILTKQIGSGLINTAIKAEMAEQSQIDEVVTVMTSLNKKAKEVIENYNISACTDITGFGLAGHAMEMASSSKVTFEIDVQKVPYIDGAIEFAKMGLVPAGTYNNKDYISNDVNSENIEECFIDVLYDPQTSGGLLITLPESEVENIMKDFEDKNMDTKIAIIGKVIEKQEKSINLVKNI
SIO_010081: JW646_RS20055
subclass of: SO_0000673
so part of: JW646_RS20055
location: complement(9580..10629)
location: region:9580-10629:-1
so has part: feature:9580-10629:-1:exon

WP_083399466.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9580-10629:-1:exon

JW646_RS20060
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
locus tag: JW646_RS20060
old locus tag: JW646_20040
so part of: sequence
location: 11951..12757
location: region:11951-12757:1
so has part: feature:11951-12757:1:exon
subclass of: SO_0000010

position:11951:1
position: 11951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12757:1
position: 12757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11951-12757:1:exon

JW646_RS20060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
locus tag: JW646_RS20060
old locus tag: JW646_20040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018590489.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKIVSFFNVKGGVGKTTLTILSAIALSKEGSRVLIIDADTQANLTQFLYKVSHSDKTMFDGLADNLSAEELIIKSPCEKYKNIDIIPSDLSLSVLSEYLTTKTNREKSVWRWFKSNVNALSHYDYIFVDLSPSYDLIARNFMLCSDSIITPIAYQDIASIRGCELFYLKYNQDLADMEMENMAKRAVVINSYTSRKLSTGDIFLEKLNEFEHIKKDLINAKISDTTVIKNAILSKLDIDDYCRKIKKSHKVREEFKEVINELKERDVL
SIO_010081: JW646_RS20060
subclass of: SO_0000673
so part of: JW646_RS20060
location: 11951..12757
location: region:11951-12757:1
so has part: feature:11951-12757:1:exon

WP_074920426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11951-12757:1:exon

JW646_RS20065
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
locus tag: JW646_RS20065
old locus tag: JW646_20045
so part of: sequence
location: 12757..13161
location: region:12757-13161:1
so has part: feature:12757-13161:1:exon
subclass of: SO_0000010

position:13161:1
position: 13161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12757-13161:1:exon

JW646_RS20065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
locus tag: JW646_RS20065
old locus tag: JW646_20045
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGLDKFLKDDKKEELVLTKKDYKSKVNNIVKNTFEKDDLNLLQIEKEVTTNKKVPMSVYFEKEDLDLLKAIAFEKNTTVNKVLMSIIKEPLKTTKVNLPHDFNINEKAKEYEVNSKKRKVEKKVETRGRKKKIK
SIO_010081: JW646_RS20065
subclass of: SO_0000673
so part of: JW646_RS20065
location: 12757..13161
location: region:12757-13161:1
so has part: feature:12757-13161:1:exon

WP_074920425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12757-13161:1:exon

JW646_RS20070
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
locus tag: JW646_RS20070
old locus tag: JW646_20050
so part of: sequence
location: complement(13290..13868)
location: region:13290-13868:-1
so has part: feature:13290-13868:-1:exon
subclass of: SO_0000010

position:13290:-1
position: 13290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13868:-1
position: 13868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13290-13868:-1:exon

JW646_RS20070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
locus tag: JW646_RS20070
old locus tag: JW646_20050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018590491.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIYGYCRVSSRSQLDNNSLELQEREITQRYEGAVIYKEQISGIKSHRPVFNEIIGKLKKGDTLVTTRLDRLCRSTKEGLEVIKNLQEKEINIHILNMGLIENSPMGDLIITCILAFSQFERSMIVERTSAGKELAKINDDYREGRPKKFTKKQISHALKLLEKHSYKEVGLMTGISKSTLIRAKRQCASVEK
SIO_010081: JW646_RS20070
subclass of: SO_0000673
so part of: JW646_RS20070
location: complement(13290..13868)
location: region:13290-13868:-1
so has part: feature:13290-13868:-1:exon

WP_228417411.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13290-13868:-1:exon

JW646_RS20075
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
locus tag: JW646_RS20075
old locus tag: JW646_20055
so part of: sequence
location: complement(14072..14272)
location: region:14072-14272:-1
so has part: feature:14072-14272:-1:exon
subclass of: SO_0000010

position:14072:-1
position: 14072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14272:-1
position: 14272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14072-14272:-1:exon

JW646_RS20075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
locus tag: JW646_RS20075
old locus tag: JW646_20055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003230776.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cold-shock protein
translation: MNNGIVKWFNNEKGFGFISVEGGEDVFVHFSAIQTDGFKSLEEGQRVNFNIVKGARGPQAENVTVL
SIO_010081: JW646_RS20075
subclass of: SO_0000673
so part of: JW646_RS20075
location: complement(14072..14272)
location: region:14072-14272:-1
so has part: feature:14072-14272:-1:exon

WP_074920423.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14072-14272:-1:exon

JW646_RS20080
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
locus tag: JW646_RS20080
old locus tag: JW646_20060
so part of: sequence
location: complement(14498..14773)
location: region:14498-14773:-1
so has part: feature:14498-14773:-1:exon
subclass of: SO_0000010

position:14498:-1
position: 14498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14773:-1
position: 14773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14498-14773:-1:exon

JW646_RS20080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
locus tag: JW646_RS20080
old locus tag: JW646_20060
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKCIISFKELYGKELEKYEVEGKHSGDVLQVMENKLCSEIAPYNTYSLKNCKNIDKKASKKTLHFKDNEGNTLSYVMEILDAQYLRKNIQI
SIO_010081: JW646_RS20080
subclass of: SO_0000673
so part of: JW646_RS20080
location: complement(14498..14773)
location: region:14498-14773:-1
so has part: feature:14498-14773:-1:exon

WP_228417412.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14498-14773:-1:exon

JW646_RS20085
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
locus tag: JW646_RS20085
old locus tag: JW646_20065
so part of: sequence
location: complement(14919..17717)
location: region:14919-17717:-1
so has part: feature:14919-17717:-1:exon
subclass of: SO_0000010

position:14919:-1
position: 14919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17717:-1
position: 17717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14919-17717:-1:exon

JW646_RS20085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
locus tag: JW646_RS20085
old locus tag: JW646_20065
inference: COORDINATES: protein motif:HMM:NF013930.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CHC2 zinc finger domain-containing protein
translation: MQYTNTVQQIPQKMQSNAQLGGGLNGKKDAFKDAVDEIRSLNCLISIMQNYNINFKKDNSGYYTNCVFHNDKTPSLRLSDKGNRAIYHCFGCGEQGDIINFICKMENVDNITALRKAYDILGRDLKYNTISDNKVENFKNFIKTNHSTIIRNKETYNLEDIYIYFDEDKKPLYCKIKYKNLLGKKHFITKSLIEMDIGYKYGDHKGFDQCKKVLYNLVEIKKAISKDDWIFFVEGEKDVETLRKINFTATTIYTKKWQNFYDEDLKNAKVIFIGDSGRSGQEFKNFIIEKLKKCCKGLKIIDLPGIEKIGDGKNKDVTDWLESGKTSKELLQIVKKSLNILDKNTLQQDEDGIYKIENEEVKESRRYITNFQIIDVTLYRNEDNNNKIIKLNLKSNHRQSIIEADAASCFSDVKIFRRYLGIDYIFYGEIQDLTKLHQWIINYFIKEDVSIFTKTGIRKINDEYVLVTNKGILKANGDFDATRKAINTIHNIDFANLDILNKYEAEVLSKHLFNFNSKENIYNTLGLGAANMLNTFARDSFMDNLPILQNLGESKSGKSKVLKILMLLFNDTNVGMSLSVSTDFELLKSFDETYLPVFLDDVNISKVSYCKLNFLSNHIRAITQGYENTKVTENLDLQKFAYNASLIISGDEEIQETAVKSRSNIVWYATSDFTRESKESVEFLCNSEEGQKLLRRFSKSLYLRVLNYYINGAFDNEYLVTRFKYDFDERLSLNNSREINTATYTMMGLELIYNTFESLGVEMNKIINLVEASDIIINNLKFNVLEENQNRFKSGYEKILEDINNLIYIPDRKVRLEENVHYKILSNNIHIAFDFKTIYDKLNNYYKQYKNEDEKLLNYNTFIKMISRSAYIADRDPKEHYKAVKIKVLVEDKNGFLDYITKNKMMFILKINEVKKLEMDNIFPIDYNENES
SIO_010081: JW646_RS20085
subclass of: SO_0000673
so part of: JW646_RS20085
location: complement(14919..17717)
location: region:14919-17717:-1
so has part: feature:14919-17717:-1:exon

WP_228417413.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14919-17717:-1:exon

JW646_RS20090
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
gene: prdB
locus tag: JW646_RS20090
old locus tag: JW646_20070
so part of: sequence
location: complement(18003..18728)
location: region:18003-18728:-1
so has part: feature:18003-18728:-1:exon
subclass of: SO_0000010

position:18003:-1
position: 18003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18728:-1
position: 18728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18003-18728:-1:exon

JW646_RS20090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
gene: prdB
locus tag: JW646_RS20090
old locus tag: JW646_20070
EC number: 1.21.4.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012157915.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl except: (pos:complement(18276..18278),aa:Sec)
transl table: 11
product: D-proline reductase (dithiol) protein PrdB
translation: MSLTVVKGMQSEIFVPITPPSVWAPVTKPLKEMKIALATAAGVHHKDDKRFNLAGDFSFREVRDNMLSKDLMVSHGGYDNGDVNKDINCMFPIDRLHELAAEGFIGGVAPVHIGFMGGGGNQQKFKEETGPEIARILKEEGVDGVLLTAGUGTCHRSAVLVQRAIEEAGIPTVIIAALPPVVRQTGTPRAVAPLVPMGANAGEPNNREMQYNIVKDTLVQLHEIQTPGKIVSLPYEYVAKV
SIO_010081: JW646_RS20090
subclass of: SO_0000673
so part of: JW646_RS20090
location: complement(18003..18728)
location: region:18003-18728:-1
so has part: feature:18003-18728:-1:exon

WP_083399465.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18003-18728:-1:exon

JW646_RS20095
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
locus tag: JW646_RS20095
old locus tag: JW646_20075
so part of: sequence
location: complement(18837..19115)
location: region:18837-19115:-1
so has part: feature:18837-19115:-1:exon
subclass of: SO_0000010

position:18837:-1
position: 18837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19115:-1
position: 19115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18837-19115:-1:exon

JW646_RS20095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
locus tag: JW646_RS20095
old locus tag: JW646_20075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018590496.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CBO2463/CBO2479 domain-containing protein
translation: MNNDKLKYGDKILYMEGVIVEIHDGCVAVDLKGRLGYLKVPMRMLISDYEIKIGQEVGFNMSFVEQLGDEVNEKYISNLMTRNKKIDEMSNK
SIO_010081: JW646_RS20095
subclass of: SO_0000673
so part of: JW646_RS20095
location: complement(18837..19115)
location: region:18837-19115:-1
so has part: feature:18837-19115:-1:exon

WP_228417414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18837-19115:-1:exon

JW646_RS20100
type: Gene
subclass of: SO_0000704
RO_0002162: 2813371
gene: prdA
locus tag: JW646_RS20100
old locus tag: JW646_20080
so part of: sequence
location: complement(19132..20970)
location: region:19132-20970:-1
so has part: feature:19132-20970:-1:exon
subclass of: SO_0000010

position:19132:-1
position: 19132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20970:-1
position: 20970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19132-20970:-1:exon

JW646_RS20100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2813371
gene: prdA
locus tag: JW646_RS20100
old locus tag: JW646_20080
EC number: 1.21.4.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004607309.1
GO function: GO:0050002 - D-proline reductase (dithiol) activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: D-proline reductase (dithiol) proprotein PrdA
translation: MSITAETAKQHANDPAVLCCRAEEGLVIGPANLEDPAIFDELVDSGLLKLDGCLTIGQILGAKLTKTCDSLTPITADVIDAIVETKEEETVVEEVKEEVKPAPVATQVQGGRLKIHIGEGKDINIEIPVGGFASQGGAQVVPVGENASVASAAKEVEKEAKVVRSLTRNHYKITEVKRGPETKIEGTVLYIREGIEEEAVASQKLVNSLKIDIITPDRYNTYSETIMDVQPIATKDGEDELGLGTTRVVDGVVMMVTGTDANGVQIGEFGSSEGILEENIMWGRPGCPEKGEIFIKTEVIIKEGTNMERPGPLAAHSATDFITQEIREALKKLDDELIVDSETFEQVRRPGKKKVVIVKEIMGQGAMHDNLILPMEPVGILGAKPNVDLGNVPVMVSPLEVLDGCIHALTCIGPASKEMSRHYWREPLVLEALHDEEVDLCGVIFVGSPQINSEKFYVSRRVGMMAEALDVDGAFVTTEGFGNNHIDFASHIEQIGMRGIPVVGMSFCAVQGALVVGNKYMTNMVDNNKSEAGIENEVLGCNTLCHEDAIRALSALKTEMGGETIAKPEKKWNPNVKDTNIELISNVTGKPVALVENETSLPMSDKRKAKYS
SIO_010081: JW646_RS20100
subclass of: SO_0000673
so part of: JW646_RS20100
location: complement(19132..20970)
location: region:19132-20970:-1
so has part: feature:19132-20970:-1:exon

WP_206925898.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19132-20970:-1:exon