Paracoccus methylovorus strain H4-D09 plasmid p3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
Paracoccus methylovroum sp.nov., a new methanol and methylamine utilizing methylotrophic denitrifer
Submitted (16-FEB-2021) Research Area Landscape Functioning, WG Microbial Biogeochemistry, Leibniz Centre for Agricultural Landscape Research (ZALF), Eberswalder Str. 84, Muencheberg D-15374, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP070370.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 369.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/21/2022 10:33:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,346\nCDSs (total) :: 4,282\nGenes (coding) :: 4,169\nCDSs (with protein) :: 4,169\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 113\nCDSs (without protein) :: 113\nPseudo Genes (ambiguous residues) :: 0 of 113\nPseudo Genes (frameshifted) :: 40 of 113\nPseudo Genes (incomplete) :: 93 of 113\nPseudo Genes (internal stop) :: 10 of 113\nPseudo Genes (multiple problems) :: 26 of 113\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009824546.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014129874.1
putative addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:WP_002813764.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004213409.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015932721.1