Rhodococcus pseudokoreensis strain R79 plasmid unnamed2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus.
Rhodococcus pseudokoreensis sp. nov. isolated from the rhizosphere of young M26 apple rootstocks
Complete Genome Sequences of Two Rhodococcus sp. Strains with Large and Linear Chromosomes, Isolated from Apple Rhizosphere
Microbiol Resour Announc 10 (24), e0015921 (2021)
Submitted (11-FEB-2021) Comparative Microbiome Analysis, Helmholtz Center Munich, Ingolstaedter Landstr. 1, Neuherberg 85764, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP070617.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAY-2020\nAssembly Method :: Microbial Assembly v. May-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 142x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 03:17:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 9,074\nCDSs (total) :: 9,009\nGenes (coding) :: 8,806\nCDSs (with protein) :: 8,806\nGenes (RNA) :: 65\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 203\nCDSs (without protein) :: 203\nPseudo Genes (ambiguous residues) :: 0 of 203\nPseudo Genes (frameshifted) :: 107 of 203\nPseudo Genes (incomplete) :: 147 of 203\nPseudo Genes (internal stop) :: 18 of 203\nPseudo Genes (multiple problems) :: 62 of 203\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
rhizosphere of apple plantlets grown in replant diseased soil
type strain of Rhodococcus pseudokoreensis
COORDINATES: similar to AA sequence:RefSeq:WP_011855469.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005241514.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687463.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011595842.1
COORDINATES: similar to AA sequence:RefSeq:WP_012691871.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009472518.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005567559.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005249418.1
COORDINATES: similar to AA sequence:RefSeq:WP_005249419.1
COORDINATES: similar to AA sequence:RefSeq:WP_007299965.1
COORDINATES: similar to AA sequence:RefSeq:WP_005570048.1
COORDINATES: similar to AA sequence:RefSeq:WP_005573130.1
COORDINATES: similar to AA sequence:RefSeq:WP_005573129.1
COORDINATES: similar to AA sequence:RefSeq:WP_005253033.1
COORDINATES: similar to AA sequence:RefSeq:WP_016880211.1
COORDINATES: similar to AA sequence:RefSeq:WP_005053830.1
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: similar to AA sequence:RefSeq:WP_005265140.1
COORDINATES: similar to AA sequence:RefSeq:WP_008264012.1
COORDINATES: similar to AA sequence:RefSeq:WP_019928427.1
COORDINATES: similar to AA sequence:RefSeq:WP_005252987.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016884317.1
COORDINATES: similar to AA sequence:RefSeq:WP_008709950.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008709951.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011798677.1
COORDINATES: similar to AA sequence:RefSeq:WP_003939260.1
COORDINATES: similar to AA sequence:RefSeq:WP_006553211.1
COORDINATES: similar to AA sequence:RefSeq:WP_008709963.1
COORDINATES: similar to AA sequence:RefSeq:WP_014805431.1
COORDINATES: similar to AA sequence:RefSeq:WP_005249393.1
COORDINATES: similar to AA sequence:RefSeq:WP_011595773.1
COORDINATES: similar to AA sequence:RefSeq:WP_012686801.1
TnsA-like heteromeric transposase endonuclease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007300057.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_016885134.1
COORDINATES: similar to AA sequence:RefSeq:WP_007300059.1
COORDINATES: similar to AA sequence:RefSeq:WP_007300060.1
COORDINATES: similar to AA sequence:RefSeq:WP_007300061.1
COORDINATES: similar to AA sequence:RefSeq:WP_007300062.1
COORDINATES: similar to AA sequence:RefSeq:WP_005562157.1
COORDINATES: similar to AA sequence:RefSeq:WP_019932841.1
COORDINATES: similar to AA sequence:RefSeq:WP_018163393.1
COORDINATES: protein motif:HMM:NF012451.2
COORDINATES: protein motif:HMM:NF013212.2
GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007533759.1
COORDINATES: similar to AA sequence:RefSeq:WP_007533761.1
COORDINATES: similar to AA sequence:RefSeq:WP_019665157.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011595655.1
COORDINATES: protein motif:HMM:NF012422.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003941048.1
COORDINATES: similar to AA sequence:RefSeq:WP_005562273.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010596909.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687279.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687278.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296122.1
COORDINATES: similar to AA sequence:RefSeq:WP_012686833.1
GO:1903425 - fluoride transmembrane transporter activity [Evidence IEA]
GO:1903424 - fluoride transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007296124.1
COORDINATES: protein motif:HMM:NF014566.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family glutamic-type intramembrane protease
COORDINATES: similar to AA sequence:RefSeq:WP_003943371.1
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_011598322.1
COORDINATES: protein motif:HMM:NF024685.2
class I SAM-dependent DNA methyltransferase