Rhodococcus pseudokoreensis strain R79 plasmid unnamed5, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus.
Rhodococcus pseudokoreensis sp. nov. isolated from the rhizosphere of young M26 apple rootstocks
Complete Genome Sequences of Two Rhodococcus sp. Strains with Large and Linear Chromosomes, Isolated from Apple Rhizosphere
Microbiol Resour Announc 10 (24), e0015921 (2021)
Submitted (11-FEB-2021) Comparative Microbiome Analysis, Helmholtz Center Munich, Ingolstaedter Landstr. 1, Neuherberg 85764, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP070614.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAY-2020\nAssembly Method :: Microbial Assembly v. May-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 142x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 03:17:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 9,074\nCDSs (total) :: 9,009\nGenes (coding) :: 8,806\nCDSs (with protein) :: 8,806\nGenes (RNA) :: 65\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 203\nCDSs (without protein) :: 203\nPseudo Genes (ambiguous residues) :: 0 of 203\nPseudo Genes (frameshifted) :: 107 of 203\nPseudo Genes (incomplete) :: 147 of 203\nPseudo Genes (internal stop) :: 18 of 203\nPseudo Genes (multiple problems) :: 62 of 203\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
rhizosphere of apple plantlets grown in replant diseased soil
type strain of Rhodococcus pseudokoreensis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007733695.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019481135.1
COORDINATES: similar to AA sequence:RefSeq:WP_008720806.1
COORDINATES: similar to AA sequence:RefSeq:WP_003944225.1
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: similar to AA sequence:RefSeq:WP_005560293.1
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF012694.2
COORDINATES: protein motif:HMM:NF019428.2
COORDINATES: similar to AA sequence:RefSeq:WP_005560297.1
TadE/TadG family type IV pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_005560298.1
pilus assembly protein TadG-related protein
COORDINATES: protein motif:HMM:NF013630.2
COORDINATES: similar to AA sequence:RefSeq:WP_003944273.1
COORDINATES: similar to AA sequence:RefSeq:WP_003900311.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611236.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009472495.1
COORDINATES: similar to AA sequence:RefSeq:WP_015292050.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015288942.1
COORDINATES: similar to AA sequence:RefSeq:WP_005260833.1
COORDINATES: protein motif:HMM:NF025669.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016882008.1
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009474347.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF013265.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: similar to AA sequence:RefSeq:WP_011331711.1
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005560340.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261446.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003945525.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896166.1
COORDINATES: similar to AA sequence:RefSeq:WP_016880417.1
RAMP superfamily CRISPR-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_012686784.1
COORDINATES: similar to AA sequence:RefSeq:WP_012686791.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599951.1
COORDINATES: similar to AA sequence:RefSeq:WP_007299931.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599952.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599953.1
COORDINATES: similar to AA sequence:RefSeq:WP_007298578.1
helicase-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007295851.1
GO:0004540 - ribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006551856.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_005257955.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012686916.1
COORDINATES: protein motif:HMM:NF015422.2
helicase associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010595833.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022698.2
COORDINATES: similar to AA sequence:RefSeq:WP_014817147.1
COORDINATES: similar to AA sequence:RefSeq:WP_010592687.1
GO:0009325 - nitrate reductase complex [Evidence IEA]
GO:0008940 - nitrate reductase activity [Evidence IEA]
GO:0009061 - anaerobic respiration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007533324.1
COORDINATES: similar to AA sequence:RefSeq:WP_003911426.1
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]
nitrate reductase molybdenum cofactor assembly chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_010592684.1
GO:0019645 - anaerobic electron transport chain [Evidence IEA]
respiratory nitrate reductase subunit gamma
COORDINATES: protein motif:HMM:NF017873.2
GO:0071949 - FAD binding [Evidence IEA]; GO:0050151 - oleate hydratase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019525200.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254221.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881391.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172041.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005261752.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005516143.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016881394.1
COORDINATES: similar to AA sequence:RefSeq:WP_007297260.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007298789.1
COORDINATES: similar to AA sequence:RefSeq:WP_007298790.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261777.1
COORDINATES: similar to AA sequence:RefSeq:WP_010593535.1
GO:0004611 - phosphoenolpyruvate carboxykinase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
phosphoenolpyruvate carboxykinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009472551.1
GO:0005515 - protein binding [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011593381.1
COORDINATES: similar to AA sequence:RefSeq:WP_005574431.1
COORDINATES: similar to AA sequence:RefSeq:WP_007298864.1
COORDINATES: similar to AA sequence:RefSeq:WP_011726465.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0004611 - phosphoenolpyruvate carboxykinase activity [Evidence IEA]; GO:0017076 - purine nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005570915.1
COORDINATES: similar to AA sequence:RefSeq:WP_007298794.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012687353.1
COORDINATES: similar to AA sequence:RefSeq:WP_007300300.1
COORDINATES: similar to AA sequence:RefSeq:WP_007300301.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018814762.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010307527.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261802.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261803.1
COORDINATES: similar to AA sequence:RefSeq:WP_016880631.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687346.1
COORDINATES: similar to AA sequence:RefSeq:WP_007300307.1
COORDINATES: similar to AA sequence:RefSeq:WP_007300308.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687343.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687342.1
COORDINATES: similar to AA sequence:RefSeq:WP_005560880.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012687339.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599178.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005564241.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687336.1
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
GO:0042559 - pteridine-containing compound biosynthetic process [Evidence IEA]; GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005560888.1
COORDINATES: similar to AA sequence:RefSeq:WP_005564238.1
COORDINATES: similar to AA sequence:RefSeq:WP_016880642.1
COORDINATES: similar to AA sequence:RefSeq:WP_016880644.1
GO:0004801 - transaldolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005567577.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016883361.1
FMN-binding glutamate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005573997.1
COORDINATES: protein motif:HMM:NF038206.1
COORDINATES: protein motif:HMM:NF022684.2
COORDINATES: similar to AA sequence:RefSeq:WP_007300325.1
COORDINATES: similar to AA sequence:RefSeq:WP_005574002.1
COORDINATES: similar to AA sequence:RefSeq:WP_005574003.1
succinate dehydrogenase iron-sulfur subunit
COORDINATES: similar to AA sequence:RefSeq:WP_005261851.1
COORDINATES: similar to AA sequence:RefSeq:WP_007300330.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005261854.1
COORDINATES: similar to AA sequence:RefSeq:WP_015890422.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687317.1
COORDINATES: similar to AA sequence:RefSeq:WP_010593497.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611781.1
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_012686759.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012686760.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611786.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011689570.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007730187.1
COORDINATES: similar to AA sequence:RefSeq:WP_005563383.1
COORDINATES: similar to AA sequence:RefSeq:WP_005515051.1
COORDINATES: similar to AA sequence:RefSeq:WP_010525002.1
COORDINATES: similar to AA sequence:RefSeq:WP_015890380.1
COORDINATES: protein motif:HMM:NF015799.2
COORDINATES: similar to AA sequence:RefSeq:WP_014466936.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687327.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261859.1
COORDINATES: similar to AA sequence:RefSeq:WP_005565159.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261756.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261181.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261180.1
COORDINATES: similar to AA sequence:RefSeq:WP_007270349.1
COORDINATES: similar to AA sequence:RefSeq:WP_018383335.1
COORDINATES: similar to AA sequence:RefSeq:WP_007270347.1
COORDINATES: similar to AA sequence:RefSeq:WP_007270346.1
COORDINATES: similar to AA sequence:RefSeq:WP_019609479.1
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012424.2
COORDINATES: similar to AA sequence:RefSeq:WP_005569151.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_011719426.1
GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011719427.1
COORDINATES: similar to AA sequence:RefSeq:WP_005569145.1
COORDINATES: similar to AA sequence:RefSeq:WP_010541300.1
COORDINATES: similar to AA sequence:RefSeq:WP_006942377.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261865.1
COORDINATES: similar to AA sequence:RefSeq:WP_009476092.1
COORDINATES: similar to AA sequence:RefSeq:WP_005566928.1
COORDINATES: similar to AA sequence:RefSeq:WP_005249820.1
COORDINATES: similar to AA sequence:RefSeq:WP_020421446.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687319.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_005261196.1
COORDINATES: similar to AA sequence:RefSeq:WP_011595472.1
COORDINATES: similar to AA sequence:RefSeq:WP_013491709.1
COORDINATES: similar to AA sequence:RefSeq:WP_014351101.1
COORDINATES: similar to AA sequence:RefSeq:WP_014983072.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005245429.1
COORDINATES: similar to AA sequence:RefSeq:WP_016691221.1
COORDINATES: similar to AA sequence:RefSeq:WP_005245366.1
GO:0008964 - phosphoenolpyruvate carboxylase activity [Evidence IEA]
GO:0015977 - carbon fixation [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005562613.1
COORDINATES: similar to AA sequence:RefSeq:WP_005258056.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005258057.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005258058.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005258059.1
COORDINATES: similar to AA sequence:RefSeq:WP_005258060.1
COORDINATES: similar to AA sequence:RefSeq:WP_005258061.1
COORDINATES: similar to AA sequence:RefSeq:WP_005258062.1
COORDINATES: similar to AA sequence:RefSeq:WP_005245357.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005258066.1
COORDINATES: similar to AA sequence:RefSeq:WP_005258068.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005261379.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015888913.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261551.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005245344.1
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005261549.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005261548.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261547.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261533.1
COORDINATES: protein motif:HMM:NF013920.2
COORDINATES: similar to AA sequence:RefSeq:WP_005245322.1
COORDINATES: similar to AA sequence:RefSeq:WP_005264102.1
COORDINATES: similar to AA sequence:RefSeq:WP_016880252.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_012687262.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_005257951.1
COORDINATES: similar to AA sequence:RefSeq:WP_005257950.1
COORDINATES: similar to AA sequence:RefSeq:WP_011593624.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881092.1
GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]
GO:0006562 - proline catabolic process [Evidence IEA]
L-glutamate gamma-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006240534.1
COORDINATES: similar to AA sequence:RefSeq:WP_005265246.1
COORDINATES: similar to AA sequence:RefSeq:WP_015695583.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012687395.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687394.1
COORDINATES: protein motif:HMM:NF024736.2
COORDINATES: similar to AA sequence:RefSeq:WP_011740562.1
COORDINATES: similar to AA sequence:RefSeq:WP_007624764.1
GO:0047448 - 5-dehydro-4-deoxyglucarate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010156007.1
COORDINATES: similar to AA sequence:RefSeq:WP_020111919.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018491250.1
COORDINATES: similar to AA sequence:RefSeq:WP_018491251.1
COORDINATES: similar to AA sequence:RefSeq:WP_019663765.1
COORDINATES: similar to AA sequence:RefSeq:WP_005197493.1
acyl-CoA dehydrogenase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005569495.1
COORDINATES: protein motif:HMM:NF013722.2
COORDINATES: similar to AA sequence:RefSeq:WP_020495928.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020112947.1
COORDINATES: similar to AA sequence:RefSeq:WP_020495926.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010312671.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007533398.1
COORDINATES: similar to AA sequence:RefSeq:WP_005243630.1
GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IEA]
GO:0016054 - organic acid catabolic process [Evidence IEA]
hydroxymethylglutaryl-CoA reductase, degradative
COORDINATES: similar to AA sequence:RefSeq:WP_003941732.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612234.1
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_086558251.1
COORDINATES: similar to AA sequence:RefSeq:WP_005516791.1
COORDINATES: similar to AA sequence:RefSeq:WP_016884898.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011600276.1
COORDINATES: similar to AA sequence:RefSeq:WP_005463988.1
COORDINATES: similar to AA sequence:RefSeq:WP_020109886.1
COORDINATES: protein motif:HMM:NF014862.2
Clp protease N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018090580.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037982.1
COORDINATES: similar to AA sequence:RefSeq:WP_005474761.1
Lrp/AsnC family transcriptional regulator
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: similar to AA sequence:RefSeq:WP_010849337.1
COORDINATES: similar to AA sequence:RefSeq:WP_005264982.1
COORDINATES: similar to AA sequence:RefSeq:WP_011593803.1
COORDINATES: similar to AA sequence:RefSeq:WP_005264984.1
COORDINATES: similar to AA sequence:RefSeq:WP_005264985.1
COORDINATES: similar to AA sequence:RefSeq:WP_019665988.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016992 - lipoate synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0009107 - lipoate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003898118.1
GO:0008660 - 1-aminocyclopropane-1-carboxylate deaminase activity [Evidence IEA]
GO:0042217 - 1-aminocyclopropane-1-carboxylate catabolic process [Evidence IEA]
1-aminocyclopropane-1-carboxylate deaminase
COORDINATES: similar to AA sequence:RefSeq:WP_005263540.1
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
pyridoxal 5'-phosphate synthase lyase subunit PdxS
COORDINATES: similar to AA sequence:RefSeq:WP_011731501.1
COORDINATES: similar to AA sequence:RefSeq:WP_015888572.1
COORDINATES: similar to AA sequence:RefSeq:WP_005263543.1
COORDINATES: similar to AA sequence:RefSeq:WP_015938565.1
COORDINATES: similar to AA sequence:RefSeq:WP_020641409.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: protein motif:HMM:NF013224.2
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: similar to AA sequence:RefSeq:WP_019738588.1
COORDINATES: similar to AA sequence:RefSeq:WP_014988867.1
COORDINATES: similar to AA sequence:RefSeq:WP_013476018.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005242534.1
COORDINATES: similar to AA sequence:RefSeq:WP_011598768.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687281.1
COORDINATES: similar to AA sequence:RefSeq:WP_005568906.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296058.1
COORDINATES: similar to AA sequence:RefSeq:WP_005195350.1
COORDINATES: similar to AA sequence:RefSeq:WP_011595847.1
COORDINATES: similar to AA sequence:RefSeq:WP_009475977.1
COORDINATES: similar to AA sequence:RefSeq:WP_009760329.1
COORDINATES: similar to AA sequence:RefSeq:WP_009760330.1
COORDINATES: similar to AA sequence:RefSeq:WP_009760331.1
COORDINATES: similar to AA sequence:RefSeq:WP_009760332.1
COORDINATES: similar to AA sequence:RefSeq:WP_009760333.1
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254559.1
COORDINATES: similar to AA sequence:RefSeq:WP_009478649.1
COORDINATES: similar to AA sequence:RefSeq:WP_007299332.1
phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011593924.1
COORDINATES: similar to AA sequence:RefSeq:WP_005265299.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011598651.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599048.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254562.1
COORDINATES: similar to AA sequence:RefSeq:WP_005245238.1
COORDINATES: similar to AA sequence:RefSeq:WP_015303058.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005254556.1
COORDINATES: similar to AA sequence:RefSeq:WP_006788021.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254554.1
COORDINATES: protein motif:HMM:NF028228.2
COORDINATES: similar to AA sequence:RefSeq:WP_011599002.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599001.1
COORDINATES: similar to AA sequence:RefSeq:WP_050787550.1
biphenyl 2,3-dioxygenase ferredoxin component
COORDINATES: similar to AA sequence:RefSeq:WP_005254550.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254549.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254548.1
3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_005254547.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254546.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612358.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254542.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254541.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254539.1
COORDINATES: similar to AA sequence:RefSeq:WP_011895475.1
COORDINATES: similar to AA sequence:RefSeq:WP_011598988.1
COORDINATES: protein motif:HMM:NF013068.2
COORDINATES: similar to AA sequence:RefSeq:WP_011600006.1
COORDINATES: similar to AA sequence:RefSeq:WP_015797089.1
COORDINATES: similar to AA sequence:RefSeq:WP_003936267.1
COORDINATES: similar to AA sequence:RefSeq:WP_012377534.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254529.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612360.1
COORDINATES: similar to AA sequence:RefSeq:WP_006247209.1
COORDINATES: similar to AA sequence:RefSeq:WP_012228708.1
COORDINATES: similar to AA sequence:RefSeq:WP_006247207.1
COORDINATES: similar to AA sequence:RefSeq:WP_007191381.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254527.1
COORDINATES: similar to AA sequence:RefSeq:WP_012691317.1
COORDINATES: similar to AA sequence:RefSeq:WP_011598984.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751495.1
COORDINATES: similar to AA sequence:RefSeq:WP_011598982.1
COORDINATES: similar to AA sequence:RefSeq:WP_011598981.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254521.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254520.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254519.1
COORDINATES: similar to AA sequence:RefSeq:WP_011598979.1
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006373156.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005254516.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011724019.1
COORDINATES: similar to AA sequence:RefSeq:WP_007299963.1
ISAzo13-like element ISRop2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005142312.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012307.2
reverse transcriptase domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
group II intron maturase-specific domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011595195.1
COORDINATES: similar to AA sequence:RefSeq:WP_017602438.1
COORDINATES: protein motif:HMM:NF024954.2
COORDINATES: similar to AA sequence:RefSeq:WP_011598965.1
COORDINATES: similar to AA sequence:RefSeq:WP_011560572.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004575906.1
COORDINATES: protein motif:HMM:NF012402.2
2Fe-2S iron-sulfur cluster binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005253633.1
SCP2 sterol-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005241055.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687246.1
COORDINATES: similar to AA sequence:RefSeq:WP_007298122.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599970.1
COORDINATES: similar to AA sequence:RefSeq:WP_007298120.1
COORDINATES: similar to AA sequence:RefSeq:WP_007298119.1
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611928.1
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005261568.1
COORDINATES: protein motif:HMM:NF012870.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611325.1
COORDINATES: similar to AA sequence:RefSeq:WP_019874013.1
phenylacetate--CoA ligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019874014.1
COORDINATES: similar to AA sequence:RefSeq:WP_019874015.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024844.2
MaoC family dehydratase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007296052.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832824.1
COORDINATES: similar to AA sequence:RefSeq:WP_005141184.1
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: similar to AA sequence:RefSeq:WP_003890307.1
COORDINATES: similar to AA sequence:RefSeq:WP_017987157.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_010593408.1
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_013873400.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599025.1
catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019509761.1
COORDINATES: similar to AA sequence:RefSeq:WP_005199572.1
COORDINATES: similar to AA sequence:RefSeq:WP_006331311.1
COORDINATES: similar to AA sequence:RefSeq:WP_006553711.1
COORDINATES: similar to AA sequence:RefSeq:WP_005569951.1
COORDINATES: similar to AA sequence:RefSeq:WP_011596182.1
COORDINATES: similar to AA sequence:RefSeq:WP_007298672.1
COORDINATES: similar to AA sequence:RefSeq:WP_012691882.1
COORDINATES: protein motif:HMM:NF012451.2
COORDINATES: similar to AA sequence:RefSeq:WP_003936868.1
COORDINATES: protein motif:HMM:NF025720.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF024729.2
COORDINATES: similar to AA sequence:RefSeq:WP_016882160.1
COORDINATES: similar to AA sequence:RefSeq:WP_009884440.1
COORDINATES: similar to AA sequence:RefSeq:NP_215563.1
COORDINATES: similar to AA sequence:RefSeq:WP_009473492.1
COORDINATES: similar to AA sequence:RefSeq:WP_005264157.1
COORDINATES: similar to AA sequence:RefSeq:WP_005264158.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_005260578.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003960926.1
COORDINATES: similar to AA sequence:RefSeq:WP_005572278.1
COORDINATES: similar to AA sequence:RefSeq:WP_011597618.1
COORDINATES: protein motif:HMM:NF017539.2
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF024258.2