Niveibacterium microcysteis strain HC41 plasmid unnamed.
type: Entry
definition: Niveibacterium microcysteis strain HC41 plasmid unnamed.
sequence version: NZ_CP071061.1
sequence date: 2023-05-06
sequence: sequence
division: CON
label: NZ_CP071061.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11158593
keyword: RefSeq
source: Niveibacterium microcysteis
organism: Niveibacterium microcysteis
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Niveibacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP071061.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 163.42x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 05:06:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,416\nCDSs (total) :: 4,341\nGenes (coding) :: 4,313\nCDSs (with protein) :: 4,313\nGenes (RNA) :: 75\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 3\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 14 of 28\nPseudo Genes (incomplete) :: 15 of 28\nPseudo Genes (internal stop) :: 1 of 28\nPseudo Genes (multiple problems) :: 2 of 28\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 28397
topology: linear
so has quality: SO_0000987
location: 1..28397
location: region:1-28397:1
RO_0002162: 2811415

NZ_CP071061
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11158593
type: BioSample
SIO_000068: biosample

1
title: Niveibacterium changnyeongensis HC41
author: Kang, M.
journal: Unpublished

2
title: Direct Submission
author: Kang, M.
journal: Submitted (23-FEB-2021) Laboratory of Molecular Environmental Microbiology, Korea University, Anam-Ro 145, Seongbuk-Gu, Seoul 02841, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28397:1
position: 28397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-28397:1:source
so part of: sequence
organism: Niveibacterium microcysteis
mol type: genomic DNA
strain: HC41
isolation source: Cyanobacterial bloom
type material: type strain of Niveibacterium microcysteis
plasmid: unnamed
country: South Korea: Hapcheon Changnyeong barrage
lat lon: 35.59 N 128.35 E
collection date: 2018-07-30

2811415
type: Taxonomy
SIO_000068: taxonomy

JY500_RS21930
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: tssG
locus tag: JY500_RS21930
old locus tag: JY500_21930
so part of: sequence
location: complement(<1..1002)
location: region:1-1002:-1
so has part: feature:1-1002:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:1002:-1
position: 1002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1002:-1:exon

JY500_RS21930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: tssG
locus tag: JY500_RS21930
old locus tag: JY500_21930
inference: COORDINATES: protein motif:HMM:NF018675.2
GO process: GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type VI secretion system baseplate subunit TssG
translation: MTWCSCEASVLKCSRAVVCGPAAHRVLPGCPLAARHLRRRNERAHEALGEHVRFGNSLALSFPASEIEQLEIESRAEDGSPQRVKLTPAFLGFTGNQGVLPQHYTERLLDREVLHRDRAARAFLDIFANRSAVQFFGAWEKYRPHFQFEAEGRSRYLPTVLSFAGFGATALRERLDDGSDASLHDETLAYYAGILRTAPRSVSAIAAVLAEYFDAPIKLVPFVGQWFRLPDESLAQLGMANATLGVDAVCGARIYQRDSRIRIEVGPLARSAFLSFMPGGSAARALDRLLGIALGPTIEVELRVLLDRREVQPLKGWPRRWRAPRLGQLACERA
SIO_010081: JY500_RS21930
subclass of: SO_0000673
so part of: JY500_RS21930
location: complement(<1..1002)
location: region:1-1002:-1
so has part: feature:1-1002:-1:exon

WP_206256572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1002:-1:exon

JY500_RS21935
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: tssF
locus tag: JY500_RS21935
old locus tag: JY500_21935
pseudo: true
so part of: sequence
location: complement(983..2822)
location: region:983-2822:-1
so has part: feature:983-2822:-1:exon
subclass of: SO_0000010

position:983:-1
position: 983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2822:-1
position: 2822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:983-2822:-1:exon

JY500_RS21935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: tssF
locus tag: JY500_RS21935
old locus tag: JY500_21935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014631296.1
GO function: GO:0003674 - molecular_function [Evidence IEA]
GO process: GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type VI secretion system baseplate subunit TssF
SIO_010081: JY500_RS21935
subclass of: SO_0000673
so part of: JY500_RS21935
location: complement(983..2822)
location: region:983-2822:-1
so has part: feature:983-2822:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:983-2822:-1:exon

JY500_RS21940
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: tssE
locus tag: JY500_RS21940
old locus tag: JY500_21940
so part of: sequence
location: complement(2819..3313)
location: region:2819-3313:-1
so has part: feature:2819-3313:-1:exon
subclass of: SO_0000010

position:2819:-1
position: 2819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3313:-1
position: 3313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2819-3313:-1:exon

JY500_RS21940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: tssE
locus tag: JY500_RS21940
old locus tag: JY500_21940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008449052.1
GO function: GO:0003674 - molecular_function [Evidence IEA]
GO process: GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type VI secretion system baseplate subunit TssE
translation: MKGFSPTLFERLFDDAPHRGDDPAPLRRWSIEELKDSVARDLESLLNSRCGLREALLESYPEAARSLASFGMMDFVGLSLANPADRARICATLERTILQHEPRLKRVHVALRGDERSVGRLNFAIQAVLYVPPTAEPVGFDAVLQPCTQQYSVASSRRALQAVA
SIO_010081: JY500_RS21940
subclass of: SO_0000673
so part of: JY500_RS21940
location: complement(2819..3313)
location: region:2819-3313:-1
so has part: feature:2819-3313:-1:exon

WP_206255180.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2819-3313:-1:exon

JY500_RS21945
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
locus tag: JY500_RS21945
old locus tag: JY500_21945
so part of: sequence
location: complement(3377..3880)
location: region:3377-3880:-1
so has part: feature:3377-3880:-1:exon
subclass of: SO_0000010

position:3377:-1
position: 3377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3880:-1
position: 3880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3377-3880:-1:exon

JY500_RS21945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
locus tag: JY500_RS21945
old locus tag: JY500_21945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011004043.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type VI secretion system tube protein Hcp
translation: MKDIYVQFKGKYDIKGESRDAEHKEWIEVSSWSHLIRQPRSATASTAGGHTAERCEHGEMIFVKDLDLTSPRIWEGCSAGHTFDEVTIDFMRADGDKRVKYLEIKLKHVLLASVTPSVAGEGIPTETFTLKYAAVQWTYTAQDIAGGVKGNKVAKWSLAKNNSTYEI
SIO_010081: JY500_RS21945
subclass of: SO_0000673
so part of: JY500_RS21945
location: complement(3377..3880)
location: region:3377-3880:-1
so has part: feature:3377-3880:-1:exon

WP_172203495.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3377-3880:-1:exon

JY500_RS22245
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: tssC
locus tag: JY500_RS22245
so part of: sequence
location: complement(3913..4473)
location: region:3913-4473:-1
so has part: feature:3913-4473:-1:exon
subclass of: SO_0000010

position:3913:-1
position: 3913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4473:-1
position: 4473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3913-4473:-1:exon

JY500_RS22245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: tssC
locus tag: JY500_RS22245
inference: COORDINATES: protein motif:HMM:TIGR03355.1
GO component: GO:0033104 - type VI protein secretion system complex [Evidence IEA]
GO function: GO:0003674 - molecular_function [Evidence IEA]
GO process: GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type VI secretion system contractile sheath large subunit
translation: MEDLPTHTFKTDEGEVALKCPTEVAITDRREKELSDLGFIPLVHCKGTDYAAFFGAQSVQKAKKYNTDAANANAVLSAQLQYIFAVCRISHYLKAMMRDKIGSFASAGNVETYLNGWVSQYVLLDDGASQEAKAEFPLREASVQVSEVPGKPGVYRAVAFLRPHFQLDELTVSLRLVAELPQSSGA
SIO_010081: JY500_RS22245
subclass of: SO_0000673
so part of: JY500_RS22245
location: complement(3913..4473)
location: region:3913-4473:-1
so has part: feature:3913-4473:-1:exon

WP_246479929.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3913-4473:-1:exon

JY500_RS22250
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: tssC
locus tag: JY500_RS22250
so part of: sequence
location: complement(4419..5330)
location: region:4419-5330:-1
so has part: feature:4419-5330:-1:exon
subclass of: SO_0000010

position:4419:-1
position: 4419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5330:-1
position: 5330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4419-5330:-1:exon

JY500_RS22250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: tssC
locus tag: JY500_RS22250
inference: COORDINATES: protein motif:HMM:TIGR03355.1
GO component: GO:0033104 - type VI protein secretion system complex [Evidence IEA]
GO function: GO:0003674 - molecular_function [Evidence IEA]
GO process: GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type VI secretion system contractile sheath large subunit
translation: MVSESRVARSPVEHSRARDLISELVQQVMSGTVVVSENLAATLDARIAELDAMLSDQLSAVMHAPEFQKLESSWRGLEYLCKQSATGQMLKIKVSTSRSASSSRTFAVRSNLTRARCSRRSTKKSLAPSGGAPFGTLLGDFDITRQPEDMYFIEQMSHVAAAAHAPFISAASPELFGLEGFTDLGKPRDLSKVFDTVEYAKWKSFRESEDARYVGLTLPHFLGRLPYNPKDGTTVEGFNFVEDVDGTDHSKYLWVNAAYAFTSRITDAFDKYGWCAAIRGSKAVAWWKICLPTPSRRTRVKSR
SIO_010081: JY500_RS22250
subclass of: SO_0000673
so part of: JY500_RS22250
location: complement(4419..5330)
location: region:4419-5330:-1
so has part: feature:4419-5330:-1:exon

WP_246479934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4419-5330:-1:exon

JY500_RS21955
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: tssB
locus tag: JY500_RS21955
old locus tag: JY500_21955
pseudo: true
so part of: sequence
location: complement(5399..5904)
location: region:5399-5904:-1
so has part: feature:5399-5904:-1:exon
subclass of: SO_0000010

position:5399:-1
position: 5399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5904:-1
position: 5904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5399-5904:-1:exon

JY500_RS21955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: tssB
locus tag: JY500_RS21955
old locus tag: JY500_21955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006384072.1
GO function: GO:0003674 - molecular_function [Evidence IEA]
GO process: GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type VI secretion system contractile sheath small subunit
SIO_010081: JY500_RS21955
subclass of: SO_0000673
so part of: JY500_RS21955
location: complement(5399..5904)
location: region:5399-5904:-1
so has part: feature:5399-5904:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5399-5904:-1:exon

JY500_RS22255
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
locus tag: JY500_RS22255
so part of: sequence
location: 6365..6532
location: region:6365-6532:1
so has part: feature:6365-6532:1:exon
subclass of: SO_0000010

position:6365:1
position: 6365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6532:1
position: 6532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6365-6532:1:exon

JY500_RS22255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
locus tag: JY500_RS22255
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQLGHAHPRRRIGGIGLGGAFEHRLRLLDIPRRHQFIDALLDCRDILELVQLGEL
SIO_010081: JY500_RS22255
subclass of: SO_0000673
so part of: JY500_RS22255
location: 6365..6532
location: region:6365-6532:1
so has part: feature:6365-6532:1:exon

WP_246479931.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6365-6532:1:exon

JY500_RS21965
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: tssJ
locus tag: JY500_RS21965
old locus tag: JY500_21965
pseudo: true
so part of: sequence
location: <7010..7435
location: region:7010-7435:1
so has part: feature:7010-7435:1:exon
subclass of: SO_0000010

position:7010:1
position: 7010
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:7435:1
position: 7435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7010-7435:1:exon

JY500_RS21965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: tssJ
locus tag: JY500_RS21965
old locus tag: JY500_21965
inference: COORDINATES: protein motif:HMM:TIGR03352.1
GO function: GO:0003674 - molecular_function [Evidence IEA]
GO process: GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type VI secretion system lipoprotein TssJ
SIO_010081: JY500_RS21965
subclass of: SO_0000673
so part of: JY500_RS21965
location: <7010..7435
location: region:7010-7435:1
so has part: feature:7010-7435:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7010-7435:1:exon

JY500_RS21970
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: tssK
locus tag: JY500_RS21970
old locus tag: JY500_21970
pseudo: true
so part of: sequence
location: 7455..8773
location: region:7455-8773:1
so has part: feature:7455-8773:1:exon
subclass of: SO_0000010

position:7455:1
position: 7455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8773:1
position: 8773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7455-8773:1:exon

JY500_RS21970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: tssK
locus tag: JY500_RS21970
old locus tag: JY500_21970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006395409.1
GO function: GO:0003674 - molecular_function [Evidence IEA]
GO process: GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type VI secretion system baseplate subunit TssK
SIO_010081: JY500_RS21970
subclass of: SO_0000673
so part of: JY500_RS21970
location: 7455..8773
location: region:7455-8773:1
so has part: feature:7455-8773:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7455-8773:1:exon

JY500_RS21975
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: icmH
locus tag: JY500_RS21975
old locus tag: JY500_21975
pseudo: true
so part of: sequence
location: 8718..9549
location: region:8718-9549:1
so has part: feature:8718-9549:1:exon
subclass of: SO_0000010

position:8718:1
position: 8718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9549:1
position: 9549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8718-9549:1:exon

JY500_RS21975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: icmH
locus tag: JY500_RS21975
old locus tag: JY500_21975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019559313.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type IVB secretion system protein IcmH/DotU
SIO_010081: JY500_RS21975
subclass of: SO_0000673
so part of: JY500_RS21975
location: 8718..9549
location: region:8718-9549:1
so has part: feature:8718-9549:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8718-9549:1:exon

JY500_RS21980
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: rrf
locus tag: JY500_RS21980
old locus tag: JY500_21980
so part of: sequence
location: complement(9887..9999)
location: region:9887-9999:-1
so has part: feature:9887-9999:-1:exon
subclass of: SO_0000573

position:9887:-1
position: 9887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9999:-1
position: 9999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9887-9999:-1:exon

JY500_RS21980
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 2811415
gene: rrf
locus tag: JY500_RS21980
old locus tag: JY500_21980
product: 5S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00001
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: JY500_RS21980
subclass of: SO_0000673
so part of: JY500_RS21980
location: complement(9887..9999)
location: region:9887-9999:-1
so has part: feature:9887-9999:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9887-9999:-1:exon

JY500_RS21985
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
locus tag: JY500_RS21985
old locus tag: JY500_21985
so part of: sequence
location: complement(10077..12946)
location: region:10077-12946:-1
so has part: feature:10077-12946:-1:exon
subclass of: SO_0000573

position:10077:-1
position: 10077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12946:-1
position: 12946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10077-12946:-1:exon

JY500_RS21985
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 2811415
locus tag: JY500_RS21985
old locus tag: JY500_21985
product: 23S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF02541
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: JY500_RS21985
subclass of: SO_0000673
so part of: JY500_RS21985
location: complement(10077..12946)
location: region:10077-12946:-1
so has part: feature:10077-12946:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10077-12946:-1:exon

JY500_RS21990
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
locus tag: JY500_RS21990
old locus tag: JY500_21990
so part of: sequence
location: complement(13200..13275)
location: region:13200-13275:-1
so has part: feature:13200-13275:-1:exon
subclass of: SO_0000663

position:13200:-1
position: 13200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13275:-1
position: 13275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13200-13275:-1:exon

JY500_RS21990
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2811415
locus tag: JY500_RS21990
old locus tag: JY500_21990
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(13240..13242),aa:Ala,seq:tgc)
SIO_010081: JY500_RS21990
subclass of: SO_0000673
so part of: JY500_RS21990
location: complement(13200..13275)
location: region:13200-13275:-1
so has part: feature:13200-13275:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13200-13275:-1:exon

JY500_RS21995
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
locus tag: JY500_RS21995
old locus tag: JY500_21995
so part of: sequence
location: complement(13313..13389)
location: region:13313-13389:-1
so has part: feature:13313-13389:-1:exon
subclass of: SO_0000663

position:13313:-1
position: 13313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13389:-1
position: 13389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13313-13389:-1:exon

JY500_RS21995
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2811415
locus tag: JY500_RS21995
old locus tag: JY500_21995
product: tRNA-Ile
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(13353..13355),aa:Ile,seq:gat)
SIO_010081: JY500_RS21995
subclass of: SO_0000673
so part of: JY500_RS21995
location: complement(13313..13389)
location: region:13313-13389:-1
so has part: feature:13313-13389:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13313-13389:-1:exon

JY500_RS22000
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
locus tag: JY500_RS22000
old locus tag: JY500_22000
so part of: sequence
location: complement(13455..14980)
location: region:13455-14980:-1
so has part: feature:13455-14980:-1:exon
subclass of: SO_0000573

position:13455:-1
position: 13455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14980:-1
position: 14980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13455-14980:-1:exon

JY500_RS22000
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 2811415
locus tag: JY500_RS22000
old locus tag: JY500_22000
product: 16S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00177
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: JY500_RS22000
subclass of: SO_0000673
so part of: JY500_RS22000
location: complement(13455..14980)
location: region:13455-14980:-1
so has part: feature:13455-14980:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13455-14980:-1:exon

JY500_RS22005
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: dnaB
locus tag: JY500_RS22005
old locus tag: JY500_22005
pseudo: true
so part of: sequence
location: complement(15402..16792)
location: region:15402-16792:-1
so has part: feature:15402-16792:-1:exon
subclass of: SO_0000010

position:15402:-1
position: 15402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16792:-1
position: 16792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15402-16792:-1:exon

JY500_RS22005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: dnaB
locus tag: JY500_RS22005
old locus tag: JY500_22005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004379779.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replicative DNA helicase
SIO_010081: JY500_RS22005
subclass of: SO_0000673
so part of: JY500_RS22005
location: complement(15402..16792)
location: region:15402-16792:-1
so has part: feature:15402-16792:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15402-16792:-1:exon

JY500_RS22010
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: pnp
locus tag: JY500_RS22010
old locus tag: JY500_22010
pseudo: true
so part of: sequence
location: complement(16901..18948)
location: region:16901-18948:-1
so has part: feature:16901-18948:-1:exon
subclass of: SO_0000010

position:16901:-1
position: 16901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18948:-1
position: 18948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16901-18948:-1:exon

JY500_RS22010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: pnp
locus tag: JY500_RS22010
old locus tag: JY500_22010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019560378.1
GO function: GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]
GO process: GO:0006402 - mRNA catabolic process [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: polyribonucleotide nucleotidyltransferase
SIO_010081: JY500_RS22010
subclass of: SO_0000673
so part of: JY500_RS22010
location: complement(16901..18948)
location: region:16901-18948:-1
so has part: feature:16901-18948:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16901-18948:-1:exon

JY500_RS22015
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: rpsO
locus tag: JY500_RS22015
old locus tag: JY500_22015
so part of: sequence
location: complement(19174..19443)
location: region:19174-19443:-1
so has part: feature:19174-19443:-1:exon
subclass of: SO_0000010

position:19174:-1
position: 19174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19443:-1
position: 19443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19174-19443:-1:exon

JY500_RS22015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: rpsO
locus tag: JY500_RS22015
old locus tag: JY500_22015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011478438.1
GO component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 30S ribosomal protein S15
translation: MAIATEQKAQIVADFQRAKGDTGSPEVQIALLTARINDLTGHFKEHTKDHHSRRGLLALVSQRRKLLDYLKRKEVDRYRSVIERLGLRK
SIO_010081: JY500_RS22015
subclass of: SO_0000673
so part of: JY500_RS22015
location: complement(19174..19443)
location: region:19174-19443:-1
so has part: feature:19174-19443:-1:exon

WP_172204726.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19174-19443:-1:exon

JY500_RS22020
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: truB
locus tag: JY500_RS22020
old locus tag: JY500_22020
pseudo: true
so part of: sequence
location: complement(19511..20434)
location: region:19511-20434:-1
so has part: feature:19511-20434:-1:exon
subclass of: SO_0000010

position:19511:-1
position: 19511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20434:-1
position: 20434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19511-20434:-1:exon

JY500_RS22020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: truB
locus tag: JY500_RS22020
old locus tag: JY500_22020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005668562.1
GO function: GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: tRNA pseudouridine(55) synthase TruB
SIO_010081: JY500_RS22020
subclass of: SO_0000673
so part of: JY500_RS22020
location: complement(19511..20434)
location: region:19511-20434:-1
so has part: feature:19511-20434:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19511-20434:-1:exon

JY500_RS22025
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: rbfA
locus tag: JY500_RS22025
old locus tag: JY500_22025
pseudo: true
so part of: sequence
location: complement(20435..20853)
location: region:20435-20853:-1
so has part: feature:20435-20853:-1:exon
subclass of: SO_0000010

position:20435:-1
position: 20435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20853:-1
position: 20853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20435-20853:-1:exon

JY500_RS22025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: rbfA
locus tag: JY500_RS22025
old locus tag: JY500_22025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014237749.1
GO function: GO:0019843 - rRNA binding [Evidence IEA]
GO process: GO:0006396 - RNA processing [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: 30S ribosome-binding factor RbfA
SIO_010081: JY500_RS22025
subclass of: SO_0000673
so part of: JY500_RS22025
location: complement(20435..20853)
location: region:20435-20853:-1
so has part: feature:20435-20853:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20435-20853:-1:exon

JY500_RS22260
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: infB
locus tag: JY500_RS22260
pseudo: true
so part of: sequence
location: complement(20936..23750)
location: region:20936-23750:-1
so has part: feature:20936-23750:-1:exon
subclass of: SO_0000010

position:20936:-1
position: 20936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23750:-1
position: 23750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20936-23750:-1:exon

JY500_RS22260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: infB
locus tag: JY500_RS22260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006402062.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0003743 - translation initiation factor activity [Evidence IEA]
GO process: GO:0006413 - translational initiation [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: translation initiation factor IF-2
SIO_010081: JY500_RS22260
subclass of: SO_0000673
so part of: JY500_RS22260
location: complement(20936..23750)
location: region:20936-23750:-1
so has part: feature:20936-23750:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20936-23750:-1:exon

JY500_RS22040
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: nusA
locus tag: JY500_RS22040
old locus tag: JY500_22040
pseudo: true
so part of: sequence
location: complement(23770..25241)
location: region:23770-25241:-1
so has part: feature:23770-25241:-1:exon
subclass of: SO_0000010

position:23770:-1
position: 23770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25241:-1
position: 25241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23770-25241:-1:exon

JY500_RS22040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: nusA
locus tag: JY500_RS22040
old locus tag: JY500_22040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012432652.1
GO process: GO:0006353 - DNA-templated transcription termination [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transcription termination factor NusA
SIO_010081: JY500_RS22040
subclass of: SO_0000673
so part of: JY500_RS22040
location: complement(23770..25241)
location: region:23770-25241:-1
so has part: feature:23770-25241:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23770-25241:-1:exon

JY500_RS22045
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: rimP
locus tag: JY500_RS22045
old locus tag: JY500_22045
so part of: sequence
location: complement(25263..25691)
location: region:25263-25691:-1
so has part: feature:25263-25691:-1:exon
subclass of: SO_0000010

position:25263:-1
position: 25263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25691:-1
position: 25691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25263-25691:-1:exon

JY500_RS22045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: rimP
locus tag: JY500_RS22045
old locus tag: JY500_22045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011239104.1
GO process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribosome maturation factor RimP
translation: MDLKLLIEKTAEGLGFEVIDIESSPRGRLLRVFIDKPEGITVEDCATVSNQLTRLFEVENIDYDRLEVSSPGLDRPLTKLAHFERFAGEEVQLRVRIPVANQRNFSGTLRGVDGETVILETATGEQRFAFDDVERARIVPKF
SIO_010081: JY500_RS22045
subclass of: SO_0000673
so part of: JY500_RS22045
location: complement(25263..25691)
location: region:25263-25691:-1
so has part: feature:25263-25691:-1:exon

WP_206255170.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25263-25691:-1:exon

JY500_RS22265
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
locus tag: JY500_RS22265
pseudo: true
so part of: sequence
location: complement(<26421..27218)
location: region:26421-27218:-1
so has part: feature:26421-27218:-1:exon
subclass of: SO_0000010

position:26421:-1
position: 26421
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:27218:-1
position: 27218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26421-27218:-1:exon

JY500_RS22265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
locus tag: JY500_RS22265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018989824.1
GO function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]
GO process: GO:0001522 - pseudouridine synthesis [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: pseudouridine synthase
SIO_010081: JY500_RS22265
subclass of: SO_0000673
so part of: JY500_RS22265
location: complement(<26421..27218)
location: region:26421-27218:-1
so has part: feature:26421-27218:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26421-27218:-1:exon

JY500_RS22055
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
gene: scpB
locus tag: JY500_RS22055
old locus tag: JY500_22055
pseudo: true
so part of: sequence
location: complement(27178..27683)
location: region:27178-27683:-1
so has part: feature:27178-27683:-1:exon
subclass of: SO_0000010

position:27178:-1
position: 27178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27683:-1
position: 27683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27178-27683:-1:exon

JY500_RS22055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
gene: scpB
locus tag: JY500_RS22055
old locus tag: JY500_22055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015435862.1
GO function: GO:0005515 - protein binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: SMC-Scp complex subunit ScpB
SIO_010081: JY500_RS22055
subclass of: SO_0000673
so part of: JY500_RS22055
location: complement(27178..27683)
location: region:27178-27683:-1
so has part: feature:27178-27683:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:27178-27683:-1:exon

JY500_RS22060
type: Gene
subclass of: SO_0000704
RO_0002162: 2811415
locus tag: JY500_RS22060
old locus tag: JY500_22060
so part of: sequence
location: complement(27781..>28397)
location: region:27781-28397:-1
so has part: feature:27781-28397:-1:exon
subclass of: SO_0000010

position:27781:-1
position: 27781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28397:-1
position: 28397
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27781-28397:-1:exon

JY500_RS22060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2811415
locus tag: JY500_RS22060
old locus tag: JY500_22060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018605820.1
GO process: GO:0051301 - cell division [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 3
transl table: 11
product: ScpA family protein
translation: MAPLTAQYLKYVEAMRRSNLELAAEYLLIAAMLLEIKSRMLLPRPAQAEAEEADPRAELVRRLLEYEQMKIAGARLDALPRVERDYEWVTVWVAEKVAERLPEVSLHDLQVAWLGLVRKAKLTRHHTIQREELSVRERMTAILRQLGGGQFQPFVELFDLTAGVPMLVVSFLAVLELVKERLVVVSQVAPLEPIYVRLNTSDAD
SIO_010081: JY500_RS22060
subclass of: SO_0000673
so part of: JY500_RS22060
location: complement(27781..>28397)
location: region:27781-28397:-1
so has part: feature:27781-28397:-1:exon

WP_206256575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27781-28397:-1:exon