Alteromonas macleodii strain Te101 plasmid pTE101a, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas/Salinimonas group; Alteromonas.
Benefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise
Submitted (12-DEC-2016) Faculty of Biology, University of Freiburg, Schaenzlestr. 1, Freiburg 79104, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP018322.1.\nBacteria and source DNA available from Prof. Wolfgang R. Hess.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 12-AUG-2016\nAssembly Method :: HGAP v. 2\nAssembly Name :: Alteromonas TE101 genome v1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 93.28x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/29/2022 04:45:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,224\nCDSs (total) :: 4,131\nGenes (coding) :: 4,113\nCDSs (with protein) :: 4,113\nGenes (RNA) :: 93\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 73\nncRNAs :: 4\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 7 of 18\nPseudo Genes (incomplete) :: 9 of 18\nPseudo Genes (internal stop) :: 7 of 18\nPseudo Genes (multiple problems) :: 4 of 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013540.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015068770.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068521.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068522.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015068523.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015068526.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068527.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068528.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068529.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068530.1
COORDINATES: similar to AA sequence:RefSeq:WP_002960490.1
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015068536.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068538.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018984045.1
COORDINATES: similar to AA sequence:RefSeq:WP_018984044.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068541.1
COORDINATES: protein motif:HMM:TIGR03737.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068543.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068544.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068545.1
COORDINATES: similar to AA sequence:RefSeq:WP_018984040.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068548.1
Ref family recombination enhancement nuclease
phosphoadenosine phosphosulfate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_015068551.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068553.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068554.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068556.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068557.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068739.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068559.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068560.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068561.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068562.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068567.1
COORDINATES: similar to AA sequence:RefSeq:WP_008302177.1
COORDINATES: similar to AA sequence:RefSeq:WP_013755110.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068576.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068577.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068740.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068583.1
COORDINATES: similar to AA sequence:RefSeq:WP_018984014.1
Members of this family include DotD of type IVB secretion systems and TraH of plasmid conjugative plasmid systems, both lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF028242.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018984012.1
COORDINATES: similar to AA sequence:RefSeq:WP_018984011.1
COORDINATES: similar to AA sequence:RefSeq:WP_018984009.1
COORDINATES: protein motif:HMM:TIGR04346.1
COORDINATES: similar to AA sequence:RefSeq:WP_018984007.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068596.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068597.1
COORDINATES: similar to AA sequence:RefSeq:WP_018984001.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015068603.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068605.1
COORDINATES: protein motif:HMM:NF022835.2
DotI/IcmL family type IV secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_018983991.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068612.1
DotH/IcmK family type IV secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_015068613.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068615.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068616.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068617.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068618.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068619.1
GO:0006274 - DNA replication termination [Evidence IEA]
DNA replication terminus site-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015068620.1
COORDINATES: similar to AA sequence:RefSeq:WP_017092094.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068621.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068622.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068623.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF036894.2
COORDINATES: similar to AA sequence:RefSeq:WP_013141646.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012281029.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF016993.2
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018736676.1
COORDINATES: protein motif:HMM:NF013722.2
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015068646.1
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015068638.1
COORDINATES: similar to AA sequence:RefSeq:WP_000198594.1
GO:0009009 - site-specific recombinase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0009294 - DNA-mediated transformation [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017446455.1
COORDINATES: similar to AA sequence:RefSeq:WP_011636340.1
COORDINATES: similar to AA sequence:RefSeq:WP_015066148.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611674.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_006084680.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015068661.1
COORDINATES: similar to AA sequence:RefSeq:WP_006991878.1
COORDINATES: protein motif:HMM:NF017691.2
excalibur calcium-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024836.2
COORDINATES: similar to AA sequence:RefSeq:WP_003202098.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008306713.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008306712.1
PQQ-dependent dehydrogenase, methanol/ethanol family
COORDINATES: protein motif:HMM:NF012575.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015131.2
COORDINATES: similar to AA sequence:RefSeq:WP_012071379.1
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:NF033573.1
COORDINATES: similar to AA sequence:RefSeq:WP_005393745.1
COORDINATES: similar to AA sequence:RefSeq:WP_004271608.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068752.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS1595-like element ISAma5 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008284282.1
COORDINATES: similar to AA sequence:RefSeq:WP_008301694.1
COORDINATES: similar to AA sequence:RefSeq:WP_008301692.1
COORDINATES: similar to AA sequence:RefSeq:WP_008301691.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011711645.1
COORDINATES: similar to AA sequence:RefSeq:WP_008301687.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007642843.1
COORDINATES: similar to AA sequence:RefSeq:WP_013755197.1
GO:0045340 - mercury ion binding [Evidence IEA]
mercury resistance system periplasmic binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:WP_008301683.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007986575.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011711679.1
COORDINATES: similar to AA sequence:RefSeq:WP_011711649.1
COORDINATES: similar to AA sequence:RefSeq:WP_007645345.1
COORDINATES: similar to AA sequence:RefSeq:WP_011415082.1
COORDINATES: similar to AA sequence:RefSeq:WP_011786631.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011786632.1
COORDINATES: similar to AA sequence:RefSeq:WP_004146522.1
COORDINATES: similar to AA sequence:RefSeq:WP_012519714.1
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_017789119.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068715.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068716.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068717.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068719.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068720.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068721.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068722.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068724.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068725.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068728.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068729.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068730.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068731.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068732.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068733.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068734.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068735.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068736.1
COORDINATES: protein motif:HMM:NF016281.2
COORDINATES: similar to AA sequence:RefSeq:WP_015068744.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_015068747.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068748.1
COORDINATES: similar to AA sequence:RefSeq:WP_018984085.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068753.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068754.1
COORDINATES: similar to AA sequence:RefSeq:WP_018984080.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068757.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068759.1
COORDINATES: similar to AA sequence:RefSeq:WP_018984076.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068764.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992394.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068766.1
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013235.2