Mesorhizobium huakuii strain 583 plasmid p_1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Phyllobacteriaceae; Mesorhizobium.
Rhizobial Microsymbionts of Kamchatka Oxytropis Species Possess Genes of the Type III and VI Secretion Systems, Which Can Affect the Development of Symbiosis
Submitted (20-MAR-2020) Laboratory of Microbiological Monitoring and Bioremediation of Soils, ARRIAM, Podbelskogo sh., 3, St. Petersburg, Pushkin 196608, Russian Federation
REFSEQ INFORMATION: The reference sequence is identical to\nCP050299.1.\nBacteria and source DNA available from Russian Collection of\nAgricultural Microorganisms RCAM04790.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: NOV-2019\nAssembly Method :: Flye v. 2.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 44.0x\nSequencing Technology :: Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 05:12:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,326\nCDSs (total) :: 8,264\nGenes (coding) :: 7,502\nCDSs (with protein) :: 7,502\nGenes (RNA) :: 62\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 762\nCDSs (without protein) :: 762\nPseudo Genes (ambiguous residues) :: 0 of 762\nPseudo Genes (frameshifted) :: 553 of 762\nPseudo Genes (incomplete) :: 295 of 762\nPseudo Genes (internal stop) :: 31 of 762\nPseudo Genes (multiple problems) :: 109 of 762\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008878491.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017273361.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009827048.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011239024.1
COORDINATES: similar to AA sequence:RefSeq:WP_016557648.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007537785.1
COORDINATES: similar to AA sequence:RefSeq:WP_004115387.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013894187.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011084703.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010916038.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013533428.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019565819.1
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018927959.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012722.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_043766426.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126142.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838189.1
COORDINATES: similar to AA sequence:RefSeq:WP_004675975.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015932577.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856452.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004676279.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
peptidase domain-containing ABC transporter
COORDINATES: protein motif:HMM:NF013209.2
COORDINATES: similar to AA sequence:RefSeq:WP_008838202.1
GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0070905 - serine binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0019264 - glycine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012536187.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006206874.1
COORDINATES: protein motif:HMM:NF018568.2
COORDINATES: similar to AA sequence:RefSeq:WP_008838481.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_006328785.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533398.1
DPP IV N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024826.2
COORDINATES: similar to AA sequence:RefSeq:WP_013533332.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533494.1
COORDINATES: similar to AA sequence:RefSeq:WP_008878173.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006199570.1
GO:0030151 - molybdenum ion binding [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003532785.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013533497.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013533498.1
COORDINATES: similar to AA sequence:RefSeq:WP_006199573.1
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF024851.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010913582.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533351.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013533352.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533492.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008876362.1
ChuX/HutX family heme-like substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006331684.1
iron-sulfur cluster assembly accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_004126059.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018097510.1
GO:0004410 - homocitrate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013533506.1
nitrogenase stabilizing/protective protein NifW
COORDINATES: similar to AA sequence:RefSeq:WP_016558440.1
GO:0009055 - electron transfer activity [Evidence IEA]
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008536549.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008536548.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970923.1
COORDINATES: similar to AA sequence:RefSeq:WP_019863284.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
COORDINATES: similar to AA sequence:RefSeq:WP_011053432.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_010875166.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913565.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913564.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533515.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533516.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013533517.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533522.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533526.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533525.1
COORDINATES: similar to AA sequence:RefSeq:WP_015243257.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008837404.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0004175 - endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025051.2
COORDINATES: similar to AA sequence:RefSeq:WP_018648293.1
COORDINATES: similar to AA sequence:RefSeq:WP_015934039.1
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390456.1
fumarate reductase/succinate dehydrogenase flavoprotein subunit
COORDINATES: protein motif:HMM:NF024997.2
COORDINATES: protein motif:HMM:NF033587.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840710.1
GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
3'(2'),5'-bisphosphate nucleotidase CysQ
COORDINATES: similar to AA sequence:RefSeq:WP_015317910.1
COORDINATES: similar to AA sequence:RefSeq:WP_006329070.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488086.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654560.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205083.1
GO:0015293 - symporter activity [Evidence IEA]
GO:0006835 - dicarboxylic acid transport [Evidence IEA]
dicarboxylate/amino acid:cation symporter
COORDINATES: protein motif:HMM:NF015690.2
COORDINATES: similar to AA sequence:RefSeq:WP_014761245.1
COORDINATES: similar to AA sequence:RefSeq:WP_017266728.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975328.1
GO:0000150 - DNA strand exchange activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_028755357.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989244.1
COORDINATES: protein motif:HMM:NF012534.2
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008872025.1
COORDINATES: similar to AA sequence:RefSeq:WP_006199601.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611376.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015930069.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856508.1
COORDINATES: similar to AA sequence:RefSeq:WP_006328763.1
COORDINATES: protein motif:HMM:NF020132.2
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013533318.1
GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014130873.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012973088.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977037.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875306.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875305.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008838287.1
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: similar to AA sequence:RefSeq:WP_004678573.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020918.2
COORDINATES: similar to AA sequence:RefSeq:WP_011982903.1
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_009453051.1
COORDINATES: protein motif:HMM:NF021581.2
COORDINATES: similar to AA sequence:RefSeq:WP_012330183.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650495.1
COORDINATES: similar to AA sequence:RefSeq:WP_015914829.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330199.1
COORDINATES: protein motif:HMM:NF015342.2
COORDINATES: similar to AA sequence:RefSeq:WP_015241571.1
COORDINATES: similar to AA sequence:RefSeq:WP_006206521.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006203136.1
COORDINATES: similar to AA sequence:RefSeq:WP_006473258.1
COORDINATES: protein motif:HMM:TIGR01414.1
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875322.1
COORDINATES: similar to AA sequence:RefSeq:WP_015471577.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013828.2
COORDINATES: similar to AA sequence:RefSeq:WP_011493046.1
COORDINATES: similar to AA sequence:RefSeq:WP_011544395.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538470.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477253.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533396.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913511.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011581891.1
hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_014530111.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003574402.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018497206.1
GO:0051213 - dioxygenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
class III extradiol ring-cleavage dioxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_018241093.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018497208.1
COORDINATES: similar to AA sequence:RefSeq:WP_017160333.1
COORDINATES: similar to AA sequence:RefSeq:WP_006336444.1
COORDINATES: protein motif:HMM:NF014670.2
COORDINATES: similar to AA sequence:RefSeq:WP_011995907.1
COORDINATES: similar to AA sequence:RefSeq:WP_011995908.1
effector-associated domain EAD1-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011995909.1
COORDINATES: similar to AA sequence:RefSeq:WP_015241822.1
COORDINATES: protein motif:HMM:NF039772.1
GTPase-associated system all-helical protein GASH
COORDINATES: similar to AA sequence:RefSeq:WP_012881181.1
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_010368375.1
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
type III secretion system effector XopAA
COORDINATES: similar to AA sequence:RefSeq:WP_003491086.1
type III secretion system effector XopAI
COORDINATES: protein motif:HMM:NF018154.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023331.2
COORDINATES: protein motif:HMM:NF019069.2
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: protein motif:HMM:NF033527.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477317.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330245.1
COORDINATES: similar to AA sequence:RefSeq:WP_018428333.1
COORDINATES: similar to AA sequence:RefSeq:WP_011348484.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019856484.1
COORDINATES: similar to AA sequence:RefSeq:WP_008878430.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603269.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501082.1
COORDINATES: similar to AA sequence:RefSeq:WP_007689226.1
COORDINATES: protein motif:HMM:NF033564.0
COORDINATES: similar to AA sequence:RefSeq:WP_010123961.1
COORDINATES: protein motif:HMM:NF024605.2
COORDINATES: protein motif:HMM:NF016178.2
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: similar to AA sequence:RefSeq:WP_012047434.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010659343.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578838.1
COORDINATES: protein motif:HMM:NF023398.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF019376.2
COORDINATES: protein motif:HMM:NF036894.2
COORDINATES: similar to AA sequence:RefSeq:WP_010915941.1
COORDINATES: similar to AA sequence:RefSeq:WP_006204737.1
COORDINATES: similar to AA sequence:RefSeq:WP_007598511.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010916134.1
COORDINATES: similar to AA sequence:RefSeq:WP_018859808.1
COORDINATES: similar to AA sequence:RefSeq:WP_016920730.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526806.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450638.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578806.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013851101.1
COORDINATES: similar to AA sequence:RefSeq:WP_008878429.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915796.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578661.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989818.1
COORDINATES: similar to AA sequence:RefSeq:WP_008033233.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012114066.1
COORDINATES: similar to AA sequence:RefSeq:WP_013637090.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019998.2
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019173554.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_020070512.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020070511.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_020227747.1
TMAO reductase system periplasmic protein TorT
COORDINATES: similar to AA sequence:RefSeq:WP_003530887.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014989827.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013166376.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989829.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014989830.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019404591.1
COORDINATES: similar to AA sequence:RefSeq:WP_012757142.1
COORDINATES: protein motif:HMM:NF024606.2
TerB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_042650430.1
COORDINATES: similar to AA sequence:RefSeq:WP_007987560.1
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019565583.1
nucleotidyltransferase and HEPN domain-containing protein
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: similar to AA sequence:RefSeq:WP_011930918.1
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF025808.2
multiubiquitin domain-containing protein
COORDINATES: protein motif:HMM:NF013094.2
COORDINATES: protein motif:HMM:NF024904.2
COORDINATES: similar to AA sequence:RefSeq:WP_013961679.1
COORDINATES: similar to AA sequence:RefSeq:WP_013961680.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533319.1
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015317132.1
autotransporter assembly complex family protein
COORDINATES: protein motif:HMM:NF018970.2
YscO family type III secretion system apparatus protein
COORDINATES: similar to AA sequence:RefSeq:WP_008546282.1
COORDINATES: protein motif:HMM:NF014196.2
COORDINATES: protein motif:HMM:NF013664.2
COORDINATES: protein motif:HMM:NF028311.2
GO:0030257 - type III protein secretion system complex [Evidence IEA]
type III secretion system inner rod subunit SctI
COORDINATES: protein motif:HMM:TIGR02552.1
SycD/LcrH family type III secretion system chaperone
COORDINATES: protein motif:HMM:NF016759.2
type III secretion system translocon subunit SctE
COORDINATES: protein motif:HMM:NF012485.2
secretin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654624.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612018.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531097.1
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:TIGR02551.1
type III secretion system cytoplasmic ring protein SctQ
COORDINATES: similar to AA sequence:RefSeq:WP_009965799.1
type III secretion system export apparatus subunit SctR
COORDINATES: similar to AA sequence:RefSeq:WP_013949073.1
type III secretion system export apparatus subunit SctS
COORDINATES: protein motif:HMM:TIGR01401.1
type III secretion system export apparatus subunit SctT
COORDINATES: protein motif:HMM:NF013479.2
EscU/YscU/HrcU family type III secretion system export apparatus switch protein
COORDINATES: protein motif:HMM:TIGR02568.1
GO:0009986 - cell surface [Evidence IEA]
GO:0050709 - negative regulation of protein secretion [Evidence IEA]; GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
type III secretion system gatekeeper subunit SctW
COORDINATES: similar to AA sequence:RefSeq:WP_006392826.1
GO:0009306 - protein secretion [Evidence IEA]
type III secretion system export apparatus subunit SctV
COORDINATES: protein motif:HMM:TIGR02500.1
type III secretion system inner membrane ring subunit SctD
COORDINATES: protein motif:HMM:NF020557.2
EscE/YscE/SsaE family type III secretion system needle protein co-chaperone
COORDINATES: protein motif:HMM:NF020948.2
GO:0015031 - protein transport [Evidence IEA]
EscF/YscF/HrpA family type III secretion system needle major subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012335275.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918131.1
COORDINATES: similar to AA sequence:RefSeq:WP_019863445.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183759.1
COORDINATES: similar to AA sequence:RefSeq:WP_019863443.1
COORDINATES: protein motif:HMM:TIGR02292.1
COORDINATES: similar to AA sequence:RefSeq:WP_005407612.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976683.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612055.1
COORDINATES: similar to AA sequence:RefSeq:WP_011084489.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633401.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488805.1
COORDINATES: similar to AA sequence:RefSeq:WP_008874799.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875097.1
COORDINATES: similar to AA sequence:RefSeq:WP_008878168.1
COORDINATES: similar to AA sequence:RefSeq:WP_008872539.1
indolepyruvate ferredoxin oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008604015.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913977.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857566.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838443.1
EscS/YscS/HrcS family type III secretion system export apparatus protein
COORDINATES: similar to AA sequence:RefSeq:WP_006612532.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488825.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857562.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875105.1
GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016844754.1
type III secretion system stator protein SctL
COORDINATES: similar to AA sequence:RefSeq:WP_008838449.1
COORDINATES: similar to AA sequence:RefSeq:WP_018458371.1
type III secretion inner membrane ring lipoprotein SctJ
COORDINATES: protein motif:HMM:NF036329.2
COORDINATES: similar to AA sequence:RefSeq:WP_008874775.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913965.1
HrpF/NolX family T3SS translocon protein
COORDINATES: protein motif:HMM:TIGR02522.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838457.1
type II and III secretion system protein family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018319550.1
COORDINATES: similar to AA sequence:RefSeq:WP_008874751.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856540.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
oxygen-independent coproporphyrinogen III oxidase
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: similar to AA sequence:RefSeq:WP_006205531.1
COORDINATES: similar to AA sequence:RefSeq:WP_006339725.1
GO:0004015 - adenosylmethionine-8-amino-7-oxononanoate transaminase activity [Evidence IEA]
GO:0009102 - biotin biosynthetic process [Evidence IEA]
adenosylmethionine--8-amino-7-oxononanoate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_010913545.1
GO:0004141 - dethiobiotin synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006333932.1
GO:0008710 - 8-amino-7-oxononanoate synthase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018430770.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004076 - biotin synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013533323.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
carboxylating nicotinate-nucleotide diphosphorylase
COORDINATES: similar to AA sequence:RefSeq:WP_013533322.1
GO:0008734 - L-aspartate oxidase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019863266.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008987 - quinolinate synthetase A activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013533320.1
COORDINATES: protein motif:HMM:NF015437.2
autoinducer binding domain-containing protein
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008872138.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012881228.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913834.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551805.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533528.1
GO:0000036 - acyl carrier activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003592717.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
beta-ketoacyl-[acyl-carrier-protein] synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006216615.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]
3-oxoacyl-[acyl-carrier-protein] reductase
COORDINATES: similar to AA sequence:RefSeq:WP_006936016.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989982.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007636999.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008878232.1
nodulation factor ABC transporter ATP-binding protein NodI
COORDINATES: similar to AA sequence:RefSeq:WP_008878233.1
COORDINATES: similar to AA sequence:RefSeq:WP_015319224.1
GO:0050656 - 3'-phosphoadenosine 5'-phosphosulfate binding [Evidence IEA]; GO:0008146 - sulfotransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018643684.1
COORDINATES: similar to AA sequence:RefSeq:WP_010914955.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO:0019419 - sulfate reduction [Evidence IEA]
sulfate adenylyltransferase subunit CysD
COORDINATES: similar to AA sequence:RefSeq:WP_019857048.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
sulfate adenylyltransferase subunit CysN
COORDINATES: similar to AA sequence:RefSeq:WP_006204752.1
COORDINATES: protein motif:HMM:NF014505.2
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018898644.1
COORDINATES: similar to AA sequence:RefSeq:WP_018898645.1
COORDINATES: similar to AA sequence:RefSeq:WP_008837405.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611884.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF014038.2
COORDINATES: protein motif:HMM:NF017085.2
COORDINATES: similar to AA sequence:RefSeq:WP_015886710.1
COORDINATES: similar to AA sequence:RefSeq:WP_018688181.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF020374.2
DUF1796 family putative cysteine peptidase
COORDINATES: protein motif:HMM:NF023271.2
COORDINATES: similar to AA sequence:RefSeq:WP_010967462.1
Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
glutamine--fructose-6-phosphate aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015317176.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489968.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762360.1
COORDINATES: similar to AA sequence:RefSeq:WP_011090955.1
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004675840.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018247185.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_006331758.1
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_009762336.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_010913612.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_016558420.1
GO:0051540 - metal cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008878158.1
NifX-associated nitrogen fixation protein
COORDINATES: similar to AA sequence:RefSeq:WP_019863334.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913616.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017559.2
COORDINATES: similar to AA sequence:RefSeq:WP_032488953.1
COORDINATES: similar to AA sequence:RefSeq:WP_014529334.1
IS21-like element ISRm9 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_018459006.1
COORDINATES: protein motif:HMM:TIGR02935.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913626.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913627.1
COORDINATES: protein motif:HMM:NF022540.2
exopolysaccharide production repressor protein
COORDINATES: similar to AA sequence:RefSeq:WP_012275085.1
COORDINATES: similar to AA sequence:RefSeq:WP_011090936.1
COORDINATES: protein motif:HMM:NF014898.2
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_017270533.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612021.1
COORDINATES: similar to AA sequence:RefSeq:WP_020817899.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425104.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913647.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913648.1
COORDINATES: similar to AA sequence:RefSeq:WP_044551230.1
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018240950.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913752.1
COORDINATES: protein motif:HMM:TIGR01727.1
COORDINATES: similar to AA sequence:RefSeq:WP_006326811.1
COORDINATES: protein motif:HMM:TIGR00976.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010913867.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240406.1
GO:0015074 - DNA integration [Evidence IEA]
phage integrase N-terminal SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012553437.1
COORDINATES: similar to AA sequence:RefSeq:WP_018855502.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019197494.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533394.1
COORDINATES: similar to AA sequence:RefSeq:WP_006199617.1
COORDINATES: similar to AA sequence:RefSeq:WP_006199618.1
COORDINATES: similar to AA sequence:RefSeq:WP_016842018.1
COORDINATES: similar to AA sequence:RefSeq:WP_016842008.1
biotin carboxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006339568.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533377.1
COORDINATES: similar to AA sequence:RefSeq:WP_006199623.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205134.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572577.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517131.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098933.1
COORDINATES: similar to AA sequence:RefSeq:WP_006614184.1
nickel-dependent hydrogenase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018517047.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]
Ni/Fe-hydrogenase, b-type cytochrome subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004112860.1
HyaD/HybD family hydrogenase maturation endopeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_018856722.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517050.1
HypC/HybG/HupF family hydrogenase formation chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_018517051.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517052.1
hydrogenase expression/formation protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517053.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517054.1
[NiFe]-hydrogenase assembly chaperone HybE
COORDINATES: protein motif:HMM:NF012592.2
GO:0016151 - nickel cation binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018240265.1
GO:0008901 - ferredoxin hydrogenase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_004112846.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: similar to AA sequence:RefSeq:WP_018517059.1
GO:0003998 - acylphosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517060.1
COORDINATES: similar to AA sequence:RefSeq:WP_006329038.1
GO:0016530 - metallochaperone activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517062.1
hydrogenase expression/formation protein HypE
COORDINATES: similar to AA sequence:RefSeq:WP_011830392.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537795.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873464.1
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006335248.1
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006330287.1
COORDINATES: similar to AA sequence:RefSeq:WP_010971865.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013533308.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533307.1
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003528526.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533305.1
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013896863.1
COORDINATES: protein motif:HMM:NF024853.2
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003596964.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012654975.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472548.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501258.1
COORDINATES: similar to AA sequence:RefSeq:WP_006329232.1
COORDINATES: similar to AA sequence:RefSeq:WP_010914028.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008871934.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_003526714.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_008840719.1
cbb3-type cytochrome c oxidase subunit 3
COORDINATES: similar to AA sequence:RefSeq:WP_006329244.1
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_010914194.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cytochrome c oxidase accessory protein CcoG
COORDINATES: similar to AA sequence:RefSeq:WP_013897071.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840723.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006329249.1
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: protein motif:HMM:NF024770.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008837259.1
COORDINATES: similar to AA sequence:RefSeq:WP_006328875.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [Evidence IEA]
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
5-demethoxyubiquinol-8 5-hydroxylase UbiM
COORDINATES: similar to AA sequence:RefSeq:WP_008871945.1
COORDINATES: similar to AA sequence:RefSeq:WP_014530888.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006643166.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018427182.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838334.1
COORDINATES: similar to AA sequence:RefSeq:WP_028714619.1
COORDINATES: similar to AA sequence:RefSeq:WP_008872070.1
GO:0050188 - phosphoenolpyruvate mutase activity [Evidence IEA]
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006333830.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_010915882.1
phosphocholine cytidylyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017268675.1
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: protein motif:HMM:NF012382.2
PLP-dependent aminotransferase family protein
COORDINATES: protein motif:HMM:NF013382.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF015297.2
COORDINATES: similar to AA sequence:RefSeq:WP_017268684.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017270616.1
COORDINATES: similar to AA sequence:RefSeq:WP_008872089.1
COORDINATES: similar to AA sequence:RefSeq:WP_018325600.1
COORDINATES: similar to AA sequence:RefSeq:WP_018325599.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008872092.1
isocitrate lyase/phosphoenolpyruvate mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012564805.1
COORDINATES: similar to AA sequence:RefSeq:WP_011505106.1
COORDINATES: similar to AA sequence:RefSeq:WP_011505107.1
COORDINATES: similar to AA sequence:RefSeq:WP_019200159.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023709.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023710.1
COORDINATES: protein motif:HMM:NF012651.2
COORDINATES: similar to AA sequence:RefSeq:WP_011505112.1
COORDINATES: similar to AA sequence:RefSeq:WP_011505114.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012564815.1
COORDINATES: similar to AA sequence:RefSeq:WP_012564816.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012564817.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_011505118.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023719.1
COORDINATES: similar to AA sequence:RefSeq:WP_019200174.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012564823.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205828.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_006023724.1
COORDINATES: similar to AA sequence:RefSeq:WP_012564826.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012564827.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009018909.1
COORDINATES: similar to AA sequence:RefSeq:WP_003608948.1
COORDINATES: similar to AA sequence:RefSeq:YP_002518660.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006331211.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012564762.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006023639.1
COORDINATES: similar to AA sequence:RefSeq:WP_015822425.1
COORDINATES: similar to AA sequence:RefSeq:WP_019200224.1
COORDINATES: similar to AA sequence:RefSeq:WP_015822429.1
COORDINATES: similar to AA sequence:RefSeq:WP_013654347.1
COORDINATES: similar to AA sequence:RefSeq:WP_002653487.1
COORDINATES: similar to AA sequence:RefSeq:WP_006340008.1
COORDINATES: similar to AA sequence:RefSeq:WP_018855409.1
COORDINATES: similar to AA sequence:RefSeq:WP_003584777.1
COORDINATES: similar to AA sequence:RefSeq:WP_041684032.1
COORDINATES: similar to AA sequence:RefSeq:WP_006934493.1
COORDINATES: similar to AA sequence:RefSeq:WP_010892380.1
COORDINATES: similar to AA sequence:RefSeq:WP_010916164.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523830.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008876741.1
COORDINATES: similar to AA sequence:RefSeq:WP_008876742.1
COORDINATES: similar to AA sequence:RefSeq:WP_008121576.1
COORDINATES: similar to AA sequence:RefSeq:WP_012638900.1
COORDINATES: similar to AA sequence:RefSeq:WP_012356952.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840496.1
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018494937.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011505081.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013913793.1
COORDINATES: similar to AA sequence:RefSeq:WP_018273814.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654879.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012564797.1
COORDINATES: similar to AA sequence:RefSeq:WP_011993075.1
COORDINATES: similar to AA sequence:RefSeq:WP_011993074.1
DUF3991 and toprim domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015341926.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873495.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009492308.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612306.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533386.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010915878.1
COORDINATES: similar to AA sequence:RefSeq:WP_012778812.1
COORDINATES: similar to AA sequence:RefSeq:WP_008837406.1
COORDINATES: similar to AA sequence:RefSeq:WP_008837407.1
COORDINATES: similar to AA sequence:RefSeq:WP_018117072.1
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: similar to AA sequence:RefSeq:WP_004359146.1
COORDINATES: similar to AA sequence:RefSeq:WP_018312679.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420313.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612008.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838414.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532617.1
COORDINATES: protein motif:HMM:NF014950.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012318.2
GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018327668.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611808.1
COORDINATES: similar to AA sequence:RefSeq:WP_007605747.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611359.1
COORDINATES: similar to AA sequence:RefSeq:WP_018422275.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023612.1
COORDINATES: similar to AA sequence:RefSeq:WP_020204002.1
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_011117183.1