Burkholderia gladioli strain BBB-01 plasmid p3, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.
Fungicidal activity of volatile organic compounds emitted by Burkholderia gladioli strain BBB-01
Submitted (12-JAN-2021) Graduate Institute of Biotechnology, National Chung Hsing University, 145 Xingda Rd. South Dist., Taichung City 402, Taiwan
REFSEQ INFORMATION: The reference sequence is identical to\nCP068051.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. OCT-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 112.0x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 03:24:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,084\nCDSs (total) :: 6,999\nGenes (coding) :: 6,935\nCDSs (with protein) :: 6,935\nGenes (RNA) :: 85\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 4\nPseudo Genes (total) :: 64\nCDSs (without protein) :: 64\nPseudo Genes (ambiguous residues) :: 0 of 64\nPseudo Genes (frameshifted) :: 19 of 64\nPseudo Genes (incomplete) :: 54 of 64\nPseudo Genes (internal stop) :: 3 of 64\nPseudo Genes (multiple problems) :: 12 of 64\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010098911.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010098913.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_017333791.1
COORDINATES: protein motif:HMM:NF018714.2
COORDINATES: similar to AA sequence:RefSeq:WP_013691737.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013699801.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699802.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691740.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691741.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691742.1
protein-disulfide reductase DsbD N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013691743.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695089.1
GO:0019867 - outer membrane [Evidence IEA]
outer membrane protein assembly factor BamE
COORDINATES: similar to AA sequence:RefSeq:WP_013691745.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691746.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691747.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691748.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691749.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695083.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732819.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691752.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691753.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732821.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691755.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735283.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691757.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_013691758.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_013691759.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_013691760.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691761.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691762.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691763.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_013691764.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695064.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013691765.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732834.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691767.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_013691768.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_013691769.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_013691770.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691772.1
lytic transglycosylase domain-containing protein
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012732842.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732843.1
COORDINATES: similar to AA sequence:RefSeq:WP_018150450.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959097.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732846.1
COORDINATES: similar to AA sequence:RefSeq:WP_011655812.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006757130.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691783.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013699818.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013691786.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691787.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691788.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699822.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691790.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699825.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_013699826.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691795.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481587.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699828.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691799.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699830.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699831.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691802.1
COORDINATES: similar to AA sequence:RefSeq:WP_011831680.1
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013700150.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699876.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666701.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691816.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013691817.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691818.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: similar to AA sequence:RefSeq:WP_012211068.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735330.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699947.1
COORDINATES: similar to AA sequence:RefSeq:WP_017425282.1
COORDINATES: similar to AA sequence:RefSeq:WP_012338377.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011881946.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]