Acinetobacter lwoffii strain H7 plasmid pH7-48, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
Identification and Characteristics of a Novel aminoglycoside nucleotidyltransferases, ANT (3')-IIx from Acinetobacter lwoffii
Submitted (30-MAR-2021) School of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Chashan University Town, Wenzhou 325000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP072553.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 2.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq; PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 07:22:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,361\nCDSs (total) :: 3,250\nGenes (coding) :: 3,169\nCDSs (with protein) :: 3,169\nGenes (RNA) :: 111\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 4\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 36 of 81\nPseudo Genes (incomplete) :: 49 of 81\nPseudo Genes (internal stop) :: 31 of 81\nPseudo Genes (multiple problems) :: 30 of 81\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
School of Laboratory Medicine and Life Sciences/Institute of Biomedical Informatics, Wenzhou Medical University, Chashan University Town, Wenzhou 325035, China
COORDINATES: similar to AA sequence:RefSeq:WP_005399986.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005262957.1
GO:0004803 - transposase activity [Evidence IEA]
IS5-like element ISAba31 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005108933.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108932.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108931.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108930.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108929.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_005108928.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108927.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005108926.1
COORDINATES: similar to AA sequence:RefSeq:WP_005404871.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108924.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005108923.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005108922.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108921.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108920.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108919.1
COORDINATES: similar to AA sequence:RefSeq:WP_004999358.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060707.1
COORDINATES: similar to AA sequence:RefSeq:WP_001146947.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_001039635.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Dam family site-specific DNA-(adenine-N6)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_000029655.1
AlwI family type II restriction endonuclease
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_005108951.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254881.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108949.1
COORDINATES: similar to AA sequence:RefSeq:WP_001057867.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611607.1
COORDINATES: similar to AA sequence:RefSeq:WP_004724726.1
GO:0046983 - protein dimerization activity [Evidence IEA]
alkyl sulfatase dimerization domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_032072965.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005108946.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108945.1
COORDINATES: similar to AA sequence:RefSeq:WP_005404865.1
COORDINATES: similar to AA sequence:RefSeq:WP_024160909.1
CmlA/FloR family chloramphenicol efflux MFS transporter
COORDINATES: similar to AA sequence:RefSeq:WP_076611394.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108943.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108942.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005000189.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108939.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005108938.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108936.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108935.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108934.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005937.1
COORDINATES: similar to AA sequence:RefSeq:WP_005399985.1