Acinetobacter lwoffii strain H7 plasmid pH7-68, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
Identification and Characteristics of a Novel aminoglycoside nucleotidyltransferases, ANT (3')-IIx from Acinetobacter lwoffii
Submitted (30-MAR-2021) School of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Chashan University Town, Wenzhou 325000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP072552.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 2.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq; PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 07:22:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,361\nCDSs (total) :: 3,250\nGenes (coding) :: 3,169\nCDSs (with protein) :: 3,169\nGenes (RNA) :: 111\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 4\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 36 of 81\nPseudo Genes (incomplete) :: 49 of 81\nPseudo Genes (internal stop) :: 31 of 81\nPseudo Genes (multiple problems) :: 30 of 81\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
School of Laboratory Medicine and Life Sciences/Institute of Biomedical Informatics, Wenzhou Medical University, Chashan University Town, Wenzhou 325035, China
COORDINATES: similar to AA sequence:RefSeq:WP_016658832.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014206479.1
COORDINATES: similar to AA sequence:RefSeq:WP_004807289.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_004995064.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001140617.1
COORDINATES: similar to AA sequence:RefSeq:WP_005194067.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_000610966.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004970510.1
COORDINATES: similar to AA sequence:RefSeq:WP_000246756.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_076611903.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668309.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668310.1
COORDINATES: similar to AA sequence:RefSeq:WP_005253611.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_001067784.1
IS6-like element IS1006 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004897244.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004733183.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_004781064.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_005180694.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004677225.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005180699.1
COORDINATES: similar to AA sequence:RefSeq:WP_004281856.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]
Cd(II)/Pb(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004992254.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004281857.1
COORDINATES: similar to AA sequence:RefSeq:WP_017385096.1
COORDINATES: similar to AA sequence:RefSeq:WP_005237477.1
ArsO family NAD(P)H-dependent flavin-containing monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_004644739.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004651694.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009511638.1
COORDINATES: similar to AA sequence:RefSeq:WP_000373080.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_004644743.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004282172.1
COORDINATES: similar to AA sequence:RefSeq:WP_004281236.1
thiol:disulfide interchange protein DsbA/DsbL
COORDINATES: similar to AA sequence:RefSeq:WP_015586042.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004733233.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004733231.1
COORDINATES: similar to AA sequence:RefSeq:WP_005062701.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004281876.1
COORDINATES: similar to AA sequence:RefSeq:WP_005180709.1
COORDINATES: similar to AA sequence:RefSeq:WP_004695740.1
COORDINATES: similar to AA sequence:RefSeq:WP_004663997.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017395658.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004668316.1
COORDINATES: similar to AA sequence:RefSeq:WP_005401401.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005329301.1
heavy metal response regulator transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_005021637.1
COORDINATES: similar to AA sequence:RefSeq:WP_005404763.1
COORDINATES: similar to AA sequence:RefSeq:WP_004695749.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000771473.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_042893601.1
IS6-like element IS1008 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005401805.1
COORDINATES: similar to AA sequence:RefSeq:WP_010116199.1
organic hydroperoxide resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_017386770.1
COORDINATES: similar to AA sequence:RefSeq:WP_004781077.1
COORDINATES: protein motif:HMM:NF023433.2
type I restriction endonuclease subunit R
COORDINATES: similar to AA sequence:RefSeq:WP_004676219.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004871221.1
COORDINATES: similar to AA sequence:RefSeq:WP_004871226.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004898139.1
COORDINATES: similar to AA sequence:RefSeq:WP_004778793.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611584.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004676025.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004676024.1
COORDINATES: similar to AA sequence:RefSeq:WP_004676020.1
COORDINATES: similar to AA sequence:RefSeq:WP_008306070.1
COORDINATES: similar to AA sequence:RefSeq:WP_000992281.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_076612084.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_004639219.1
COORDINATES: similar to AA sequence:RefSeq:WP_008306065.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000897307.1
COORDINATES: similar to AA sequence:RefSeq:WP_000369784.1