Acinetobacter lwoffii strain H7 plasmid pH7-250, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
Identification and Characteristics of a Novel aminoglycoside nucleotidyltransferases, ANT (3')-IIx from Acinetobacter lwoffii
Submitted (30-MAR-2021) School of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Chashan University Town, Wenzhou 325000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP072550.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 2.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq; PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 07:22:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,361\nCDSs (total) :: 3,250\nGenes (coding) :: 3,169\nCDSs (with protein) :: 3,169\nGenes (RNA) :: 111\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 4\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 36 of 81\nPseudo Genes (incomplete) :: 49 of 81\nPseudo Genes (internal stop) :: 31 of 81\nPseudo Genes (multiple problems) :: 30 of 81\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
School of Laboratory Medicine and Life Sciences/Institute of Biomedical Informatics, Wenzhou Medical University, Chashan University Town, Wenzhou 325035, China
COORDINATES: similar to AA sequence:RefSeq:WP_005006263.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015060718.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006225.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005006224.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006221.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006219.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006214.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006211.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006210.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006208.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006206.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028471.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006204.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028476.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028478.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028487.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006163.1
COORDINATES: similar to AA sequence:RefSeq:WP_010591044.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006161.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028493.1
COORDINATES: similar to AA sequence:RefSeq:WP_004637225.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017402833.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006143.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006141.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028500.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005006134.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028504.1
COORDINATES: similar to AA sequence:RefSeq:WP_010591043.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006125.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006124.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028510.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028512.1
COORDINATES: similar to AA sequence:RefSeq:WP_010591041.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006110.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006108.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028515.1
COORDINATES: protein motif:HMM:NF020377.2
type I-E CRISPR-associated protein Cas6/Cse3/CasE
COORDINATES: similar to AA sequence:RefSeq:WP_005006100.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028518.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028520.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006087.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006085.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006083.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006080.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006077.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006076.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006075.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028529.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006071.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006069.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006063.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006061.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006057.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006055.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006052.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028536.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006049.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028541.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005006045.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006043.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006040.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006038.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028546.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006032.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611607.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000422636.1
aminoglycoside O-phosphotransferase APH(3')-VIa
COORDINATES: similar to AA sequence:RefSeq:WP_005028567.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006029.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006024.1
COORDINATES: similar to AA sequence:RefSeq:WP_013124600.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001381192.1
COORDINATES: similar to AA sequence:RefSeq:WP_004194535.1
COORDINATES: similar to AA sequence:RefSeq:WP_000259031.1
sulfonamide-resistant dihydropteroate synthase Sul1
COORDINATES: similar to AA sequence:RefSeq:WP_000679427.1
COORDINATES: similar to AA sequence:RefSeq:WP_010552641.1
COORDINATES: similar to AA sequence:RefSeq:WP_001176353.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_032491907.1
inhibitor-resistant extended-spectrum class A beta-lactamase PER-1
COORDINATES: similar to AA sequence:RefSeq:WP_000050481.1
IS91-like element ISCR1 family transposase
quaternary ammonium compound efflux SMR transporter QacE delta 1
COORDINATES: similar to AA sequence:RefSeq:WP_003159191.1
aminoglycoside N-acetyltransferase AAC(6')-Ib4
COORDINATES: similar to AA sequence:RefSeq:WP_000237816.1
NAD(+)--rifampin ADP-ribosyltransferase Arr-3
COORDINATES: similar to AA sequence:RefSeq:YP_005221021.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006022.1
COORDINATES: similar to AA sequence:RefSeq:WP_016655795.1
COORDINATES: similar to AA sequence:RefSeq:WP_005257553.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: protein motif:HMM:NF012372.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005262957.1
IS5-like element ISAba31 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005267485.1
trimethoprim-resistant dihydrofolate reductase DfrA41
COORDINATES: similar to AA sequence:RefSeq:WP_005261759.1
COORDINATES: similar to AA sequence:RefSeq:WP_005172781.1
COORDINATES: similar to AA sequence:RefSeq:YP_004997635.1
GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
peptide-methionine (S)-S-oxide reductase
COORDINATES: similar to AA sequence:RefSeq:WP_016141752.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006014.1
COORDINATES: similar to AA sequence:RefSeq:WP_032072965.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISAba14 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004946882.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_005009897.1
COORDINATES: similar to AA sequence:RefSeq:WP_004232337.1
COORDINATES: similar to AA sequence:RefSeq:WP_016655059.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005990.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005987.1
COORDINATES: similar to AA sequence:RefSeq:WP_000067575.1
COORDINATES: similar to AA sequence:RefSeq:WP_001180368.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005981.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005980.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005978.1
COORDINATES: similar to AA sequence:RefSeq:WP_000856068.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005975.1
COORDINATES: similar to AA sequence:RefSeq:WP_000891992.1
COORDINATES: similar to AA sequence:RefSeq:WP_000145713.1
COORDINATES: similar to AA sequence:RefSeq:WP_000633833.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005928.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005926.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005924.1
COORDINATES: similar to AA sequence:RefSeq:WP_001985060.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005919.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005918.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005916.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005914.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005912.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028617.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028620.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005904.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028625.1
DotH/IcmK family type IV secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_005005897.1
DotI/IcmL family type IV secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_005028629.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028631.1
Members of this family include DotD of type IVB secretion systems and TraH of plasmid conjugative plasmid systems, both lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005028633.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005028635.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028638.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005878.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005876.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_005028640.1
Type IV secretion system protein IcmP/DotM
COORDINATES: similar to AA sequence:RefSeq:WP_005005870.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005868.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028650.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028652.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028656.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028658.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005821.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005820.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005819.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005028665.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005815.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028668.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028669.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005810.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028671.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005808.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028673.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005806.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028675.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028677.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028679.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005799.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028684.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028686.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005795.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005792.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028693.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005788.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028696.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028698.1
strawberry notch C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005005782.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005780.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005779.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005776.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005773.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005771.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005767.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005764.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005760.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005759.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005757.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005756.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028393.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005005752.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005750.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005749.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005748.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005747.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005746.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005745.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005744.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005743.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005742.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005740.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005005738.1
COORDINATES: similar to AA sequence:RefSeq:WP_000742756.1
IS5-like element ISAba12 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005028412.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006366.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006362.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006360.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016656266.1
COORDINATES: similar to AA sequence:RefSeq:WP_006581699.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612089.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_000214125.1
chloramphenicol/florfenicol efflux MFS transporter FloR
COORDINATES: similar to AA sequence:RefSeq:WP_001253717.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001067784.1
COORDINATES: similar to AA sequence:RefSeq:WP_001986494.1
COORDINATES: similar to AA sequence:RefSeq:WP_014325835.1
Mph(E) family macrolide 2'-phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_000052512.1
ABC-F type ribosomal protection protein Msr(E)
COORDINATES: similar to AA sequence:RefSeq:WP_000369784.1
COORDINATES: similar to AA sequence:RefSeq:WP_000897307.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_076611903.1
COORDINATES: similar to AA sequence:RefSeq:WP_001180106.1
COORDINATES: similar to AA sequence:RefSeq:WP_000985610.1
putative addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:WP_000286964.1
COORDINATES: similar to AA sequence:RefSeq:WP_000172759.1
COORDINATES: similar to AA sequence:RefSeq:WP_006582675.1
COORDINATES: similar to AA sequence:RefSeq:WP_019383542.1
COORDINATES: similar to AA sequence:RefSeq:WP_004809025.1
COORDINATES: similar to AA sequence:RefSeq:WP_002011209.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF033517.1
IS66-like element ISAba16 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076611584.1
GO:0015074 - DNA integration [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005006271.1
COORDINATES: similar to AA sequence:RefSeq:WP_005028445.1
COORDINATES: similar to AA sequence:RefSeq:WP_005006266.1