Legionella sainthelensi strain LA01-117 plasmid pLA01-117_113k, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.
Legionella sainthelensi LA01-117, whole genome sequence of a clinical isolate from New Zealand
Submitted (15-OCT-2018) Microbiology, Canterbury Health Laboratories, cnr Tuam St and Hagley Ave, Christchurch 8011, New Zealand
Submitted (16-DEC-2017) Microbiology, Canterbury Health Laboratories, cnr Tuam St and Hagley Ave, Christchurch 8011, New Zealand
REFSEQ INFORMATION: The reference sequence is identical to\nCP025493.2.\n\nOn Feb 9, 2019 this sequence version replaced NZ_CP025493.1.\nBacteria and source DNA available from Microbiology department,\nCanterbury Health Laboratories.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. v3.6.0; CANU v. v1.5;\n Nanopolish v. v0.5; Pilon v. v1.22;\n Unicycler v. 0.4.4\nAssembly Name :: LA01-117_contigs.fasta\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 20.0x\nSequencing Technology :: Illumina MiSeq; MinIon-Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 23:36:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,971\nCDSs (total) :: 3,907\nGenes (coding) :: 3,844\nCDSs (with protein) :: 3,844\nGenes (RNA) :: 64\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 4\nPseudo Genes (total) :: 63\nCDSs (without protein) :: 63\nPseudo Genes (ambiguous residues) :: 0 of 63\nPseudo Genes (frameshifted) :: 33 of 63\nPseudo Genes (incomplete) :: 43 of 63\nPseudo Genes (internal stop) :: 21 of 63\nPseudo Genes (multiple problems) :: 26 of 63\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF040041.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004450394.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_013347329.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347328.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655346.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235319.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235318.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235317.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_004450411.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_019235315.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655339.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655338.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_004450417.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_010655336.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_004450422.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_004450424.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_019235308.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_019235307.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_013347313.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450431.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347311.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347310.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_019235302.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347308.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_010655325.1
GO:0005576 - extracellular region [Evidence IEA]
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_004450445.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347307.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235298.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235297.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450452.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235295.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212465.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637164.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637165.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212594.1
GO:0015333 - peptide:proton symporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003637168.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637169.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003637170.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637171.1
COORDINATES: similar to AA sequence:RefSeq:WP_010946962.1
COORDINATES: similar to AA sequence:RefSeq:WP_013101292.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010946964.1
COORDINATES: similar to AA sequence:RefSeq:WP_010946300.1
involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012979179.1
COORDINATES: similar to AA sequence:RefSeq:WP_012979178.1
COORDINATES: protein motif:HMM:NF025393.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019350418.1
GAF domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF024547.2
COORDINATES: similar to AA sequence:RefSeq:WP_010653254.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010655032.1
COORDINATES: similar to AA sequence:RefSeq:WP_010653253.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025871.2
iron-containing redox enzyme family protein
COORDINATES: protein motif:HMM:NF039614.1
COORDINATES: similar to AA sequence:RefSeq:WP_018577743.1
COORDINATES: similar to AA sequence:RefSeq:WP_010653566.1
COORDINATES: similar to AA sequence:RefSeq:WP_010654973.1
COORDINATES: similar to AA sequence:RefSeq:WP_019234299.1
COORDINATES: similar to AA sequence:RefSeq:WP_010652943.1
COORDINATES: similar to AA sequence:RefSeq:WP_011288836.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010652946.1
COORDINATES: similar to AA sequence:RefSeq:WP_014809866.1
low affinity iron permease family protein
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF022629.2
COORDINATES: similar to AA sequence:RefSeq:WP_002649095.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010585494.1
COORDINATES: similar to AA sequence:RefSeq:WP_010653726.1
COORDINATES: protein motif:HMM:NF019148.2
WavE lipopolysaccharide synthesis family protein
COORDINATES: protein motif:HMM:NF012695.2
NTP transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009672212.1
COORDINATES: similar to AA sequence:RefSeq:WP_007509002.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012187538.1
COORDINATES: similar to AA sequence:RefSeq:WP_015961495.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187540.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845095.1
COORDINATES: similar to AA sequence:RefSeq:WP_019350394.1
COORDINATES: similar to AA sequence:RefSeq:WP_018578482.1
COORDINATES: protein motif:HMM:NF012601.2
GO:0008251 - tRNA-specific adenosine deaminase activity [Evidence IEA]
GO:0002100 - tRNA wobble adenosine to inosine editing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019234219.1
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: similar to AA sequence:RefSeq:WP_010653238.1
COORDINATES: similar to AA sequence:RefSeq:WP_003636668.1
COORDINATES: similar to AA sequence:RefSeq:WP_010653239.1
COORDINATES: protein motif:HMM:NF014794.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013188.2
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]