Legionella sainthelensi strain LA01-117 plasmid pLA01-117_150k, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.
Legionella sainthelensi LA01-117, whole genome sequence of a clinical isolate from New Zealand
Submitted (15-OCT-2018) Microbiology, Canterbury Health Laboratories, cnr Tuam St and Hagley Ave, Christchurch 8011, New Zealand
Submitted (16-DEC-2017) Microbiology, Canterbury Health Laboratories, cnr Tuam St and Hagley Ave, Christchurch 8011, New Zealand
REFSEQ INFORMATION: The reference sequence is identical to\nCP025492.2.\n\nOn Feb 9, 2019 this sequence version replaced NZ_CP025492.1.\nBacteria and source DNA available from Microbiology department,\nCanterbury Health Laboratories.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. v3.6.0; CANU v. v1.5;\n Nanopolish v. v0.5; Pilon v. v1.22;\n Unicycler v. 0.4.4\nAssembly Name :: LA01-117_contigs.fasta\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 20.0x\nSequencing Technology :: Illumina MiSeq; MinIon-Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 23:36:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,971\nCDSs (total) :: 3,907\nGenes (coding) :: 3,844\nCDSs (with protein) :: 3,844\nGenes (RNA) :: 64\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 4\nPseudo Genes (total) :: 63\nCDSs (without protein) :: 63\nPseudo Genes (ambiguous residues) :: 0 of 63\nPseudo Genes (frameshifted) :: 33 of 63\nPseudo Genes (incomplete) :: 43 of 63\nPseudo Genes (internal stop) :: 21 of 63\nPseudo Genes (multiple problems) :: 26 of 63\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF012791.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014845097.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845098.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845099.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845100.1
FIST N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845101.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014845102.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845103.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014845104.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019350449.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845106.1
COORDINATES: similar to AA sequence:RefSeq:WP_012565544.1
HlyD family efflux transporter periplasmic adaptor subunit
10.2 : Ribosomal proteins: synthesis and modification
COORDINATES: similar to AA sequence:RefSeq:WP_014845108.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
ribosome-associated ATPase/putative transporter RbbA
COORDINATES: similar to AA sequence:RefSeq:WP_011419049.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845110.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845111.1
COORDINATES: protein motif:HMM:NF033516.0
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014845113.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845114.1
COORDINATES: protein motif:HMM:NF025677.2
COORDINATES: protein motif:HMM:NF016847.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025217.2
COORDINATES: similar to AA sequence:RefSeq:WP_014845117.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014845118.1
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_014845120.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845121.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014845122.1
type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
COORDINATES: similar to AA sequence:RefSeq:WP_014845123.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845124.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014845125.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014845126.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845127.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845128.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845129.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845131.1
COORDINATES: protein motif:HMM:NF022091.2
COORDINATES: similar to AA sequence:RefSeq:WP_014845133.1
COORDINATES: similar to AA sequence:RefSeq:WP_003636896.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845134.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_019350438.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_014845136.1
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011212492.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655338.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_004450417.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: protein motif:HMM:TIGR02750.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: protein motif:HMM:TIGR02742.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_004450424.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_019235308.1
type-F conjugative transfer system protein TraW
COORDINATES: protein motif:HMM:NF021213.2
COORDINATES: similar to AA sequence:RefSeq:WP_019235306.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450431.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347311.1
COORDINATES: protein motif:HMM:TIGR02756.1
type-F conjugative transfer system secretin TraK
COORDINATES: protein motif:HMM:NF017152.2
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: protein motif:HMM:TIGR02762.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_014845152.1
GO:0005576 - extracellular region [Evidence IEA]
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_014845153.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845154.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845155.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845156.1
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006109 - regulation of carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010655322.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845158.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845159.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845160.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845161.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655317.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655316.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_019350432.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845164.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010655313.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845018.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655311.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845020.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845021.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845022.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655442.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235283.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235354.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845026.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845027.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235358.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845029.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212584.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845031.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845032.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845033.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845034.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655429.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024917.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003632074.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845037.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845038.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845039.1
COORDINATES: similar to AA sequence:RefSeq:WP_017442831.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655423.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845042.1
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845043.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845044.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655419.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: protein motif:HMM:NF024803.2
MerR family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:TIGR03138.1
GO:0043867 - 7-cyano-7-deazaguanine tRNA-ribosyltransferase activity [Evidence IEA]; GO:0033739 - preQ1 synthase activity [Evidence IEA]
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
NADPH-dependent 7-cyano-7-deazaguanine reductase QueF
COORDINATES: similar to AA sequence:RefSeq:WP_014845048.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655416.1
bifunctional GNAT family N-acetyltransferase/aminoglycoside 3'-phosphotransferase/choline kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845050.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845051.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845052.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845053.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845054.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845055.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845056.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655405.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014845058.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845059.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845060.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655400.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845062.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845063.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655397.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019350461.1
COORDINATES: protein motif:HMM:NF024819.2
COORDINATES: similar to AA sequence:RefSeq:WP_016356976.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845069.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655392.1
structural toxin protein (hemagglutinin/hemolysin) RtxA
COORDINATES: similar to AA sequence:RefSeq:WP_010655391.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655390.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845073.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845074.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845075.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845076.1
oxacillin-hydrolyzing class D beta-lactamase OXA-29
COORDINATES: similar to AA sequence:RefSeq:WP_011212531.1
GO:0008658 - penicillin binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014845078.1
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014845079.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845080.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845081.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845082.1
COORDINATES: similar to AA sequence:RefSeq:WP_010073265.1
COORDINATES: protein motif:HMM:NF024898.2
COORDINATES: similar to AA sequence:RefSeq:WP_014845084.1
bifunctional GrpB family protein/GNAT family N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011212524.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845086.1
COORDINATES: similar to AA sequence:RefSeq:WP_014844020.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:TIGR00254.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_014845089.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845091.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845092.1
7.4 : Cations and iron carrying compounds
15.10 : Adaptations to atypical conditions
COORDINATES: similar to AA sequence:RefSeq:WP_011216270.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010655385.1
GO:0018454 - acetoacetyl-CoA reductase activity [Evidence IEA]
GO:0042619 - poly-hydroxybutyrate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012187540.1
COORDINATES: similar to AA sequence:RefSeq:WP_015961495.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187538.1
COORDINATES: similar to AA sequence:RefSeq:WP_007509002.1
GO:0004803 - transposase activity [Evidence IEA]