Legionella anisa isolate UMCG_3A plasmid p3A2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.
Detection of Legionella anisa in water from hospital dental unit and molecular characterization by whole-genome sequencing
Submitted (23-MAY-2018) Medical Microbiology, UMCG, Hanzeplein 1, Groningen 9713 GZ, Netherlands
REFSEQ INFORMATION: The reference sequence is identical to\nCP029565.1.\nBacteria and source DNA available from University Medical Center\nGroningen, Medical Microbiology Department, Molecular Unit Research\nLab, PI J.W.A. Rossen.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JAN-2018\nAssembly Method :: Hybrid assembly v. Unicycler v0.4.1\nAssembly Name :: UMCG_Lani3A\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 76.0x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 02:50:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,856\nCDSs (total) :: 3,800\nGenes (coding) :: 3,748\nCDSs (with protein) :: 3,748\nGenes (RNA) :: 56\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 52\nCDSs (without protein) :: 52\nPseudo Genes (ambiguous residues) :: 0 of 52\nPseudo Genes (frameshifted) :: 20 of 52\nPseudo Genes (incomplete) :: 27 of 52\nPseudo Genes (internal stop) :: 12 of 52\nPseudo Genes (multiple problems) :: 7 of 52\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024880.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014631.2
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: similar to AA sequence:RefSeq:WP_019350373.1
COORDINATES: similar to AA sequence:RefSeq:WP_019350374.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212604.1
COORDINATES: similar to AA sequence:RefSeq:WP_019233016.1
COORDINATES: similar to AA sequence:RefSeq:WP_019233015.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_019233014.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_011212608.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_011212609.1
COORDINATES: similar to AA sequence:RefSeq:WP_010654219.1
COORDINATES: similar to AA sequence:RefSeq:WP_010654218.1
COORDINATES: similar to AA sequence:RefSeq:WP_019350381.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_011212612.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_011212613.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_019350384.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_011212615.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_011212616.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_011212617.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_019233002.1
COORDINATES: similar to AA sequence:RefSeq:WP_019350389.1
conjugal transfer mating-pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_019350390.1
COORDINATES: similar to AA sequence:RefSeq:WP_019350438.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_004948411.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
type II toxin-antitoxin system HigB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019350392.1
COORDINATES: protein motif:HMM:TIGR02768.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_012187532.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655087.1
COORDINATES: similar to AA sequence:RefSeq:WP_006869499.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006869498.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006870345.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212624.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019232989.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006871708.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003635393.1
COORDINATES: protein motif:HMM:NF013117.2
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF020037.2
COORDINATES: protein motif:HMM:TIGR00254.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_010654262.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014845111.1
COORDINATES: similar to AA sequence:RefSeq:WP_010653248.1
COORDINATES: similar to AA sequence:RefSeq:WP_019233278.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014845113.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655385.1
GO:0018454 - acetoacetyl-CoA reductase activity [Evidence IEA]
GO:0042619 - poly-hydroxybutyrate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003637171.1