Legionella anisa isolate UMCG_3A plasmid p3A1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.
Detection of Legionella anisa in water from hospital dental unit and molecular characterization by whole-genome sequencing
Submitted (23-MAY-2018) Medical Microbiology, UMCG, Hanzeplein 1, Groningen 9713 GZ, Netherlands
REFSEQ INFORMATION: The reference sequence is identical to\nCP029564.1.\nBacteria and source DNA available from University Medical Center\nGroningen, Medical Microbiology Department, Molecular Unit Research\nLab, PI J.W.A. Rossen.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JAN-2018\nAssembly Method :: Hybrid assembly v. Unicycler v0.4.1\nAssembly Name :: UMCG_Lani3A\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 76.0x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 02:50:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,856\nCDSs (total) :: 3,800\nGenes (coding) :: 3,748\nCDSs (with protein) :: 3,748\nGenes (RNA) :: 56\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 52\nCDSs (without protein) :: 52\nPseudo Genes (ambiguous residues) :: 0 of 52\nPseudo Genes (frameshifted) :: 20 of 52\nPseudo Genes (incomplete) :: 27 of 52\nPseudo Genes (internal stop) :: 12 of 52\nPseudo Genes (multiple problems) :: 7 of 52\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013347313.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004450431.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347311.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347310.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_019235302.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347308.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_010655325.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_004450445.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347307.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212600.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235297.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450452.1
COORDINATES: similar to AA sequence:RefSeq:WP_014843129.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212465.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637164.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637165.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637166.1
GO:0015333 - peptide:proton symporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011212461.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212460.1
COORDINATES: similar to AA sequence:RefSeq:NP_819053.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006872170.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235285.1
COORDINATES: similar to AA sequence:RefSeq:WP_012466401.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655442.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235283.1
COORDINATES: protein motif:HMM:NF013828.2
COORDINATES: similar to AA sequence:RefSeq:WP_006869919.1
COORDINATES: similar to AA sequence:RefSeq:WP_011788482.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025124.2
COORDINATES: similar to AA sequence:RefSeq:WP_015445043.1
COORDINATES: similar to AA sequence:RefSeq:WP_015614296.1
COORDINATES: similar to AA sequence:RefSeq:WP_014549823.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015445056.1
COORDINATES: similar to AA sequence:RefSeq:WP_013101334.1
COORDINATES: similar to AA sequence:RefSeq:WP_013101333.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_002436621.1
COORDINATES: similar to AA sequence:RefSeq:WP_013101345.1
COORDINATES: similar to AA sequence:RefSeq:WP_006870953.1
COORDINATES: similar to AA sequence:RefSeq:WP_019350285.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012187544.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_019235262.1
COORDINATES: similar to AA sequence:RefSeq:WP_005670924.1
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF016154.2
COORDINATES: similar to AA sequence:RefSeq:WP_011946103.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003631825.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014843942.1
COORDINATES: similar to AA sequence:RefSeq:WP_019350407.1
COORDINATES: similar to AA sequence:RefSeq:WP_019350406.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015444311.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010655196.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006530404.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019235254.1
COORDINATES: similar to AA sequence:RefSeq:WP_006870341.1
COORDINATES: protein motif:HMM:TIGR03814.1
GO:0004359 - glutaminase activity [Evidence IEA]
GO:0006541 - glutamine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003635100.1
GO:0003824 - catalytic activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011212883.1
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_010948076.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013676.2
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611288.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000217401.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: protein motif:HMM:NF024628.2
COORDINATES: protein motif:HMM:NF022783.2
COORDINATES: similar to AA sequence:RefSeq:WP_019898538.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931323.1
COORDINATES: protein motif:HMM:NF012402.2
COORDINATES: protein motif:HMM:NF019268.2
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: protein motif:HMM:NF012722.2
COORDINATES: similar to AA sequence:RefSeq:WP_003234247.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013347338.1
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_013682673.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011074406.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018577622.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845121.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_005967364.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_047389784.1
COORDINATES: similar to AA sequence:RefSeq:WP_010653551.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978961.1
GO:0004417 - hydroxyethylthiazole kinase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019232820.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239965.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845032.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845031.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212584.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845029.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235358.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212587.1
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_019235354.1
COORDINATES: protein motif:HMM:NF016232.2
putative DNA binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006869904.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006869903.1
type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
COORDINATES: similar to AA sequence:RefSeq:WP_006249554.1
COORDINATES: similar to AA sequence:RefSeq:WP_003631594.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655392.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655391.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655390.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235344.1
COORDINATES: similar to AA sequence:RefSeq:WP_015444990.1
ArsI/CadI family heavy metal resistance metalloenzyme
COORDINATES: similar to AA sequence:RefSeq:WP_019234165.1
COORDINATES: similar to AA sequence:RefSeq:WP_015444988.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010947338.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
MerR family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010947780.1
COORDINATES: protein motif:HMM:NF018009.2
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016239111.1
COORDINATES: similar to AA sequence:RefSeq:WP_005780075.1
COORDINATES: protein motif:HMM:NF036995.2
COORDINATES: similar to AA sequence:RefSeq:WP_011939568.1
COORDINATES: similar to AA sequence:RefSeq:WP_020210956.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845073.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655374.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655373.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655372.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014845084.1
bifunctional GrpB family protein/GNAT family N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011212524.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845086.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655365.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655346.1
COORDINATES: similar to AA sequence:RefSeq:WP_010947783.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235319.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235318.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235317.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_004450411.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_019235315.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655339.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655338.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_004450417.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_010655336.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_011212488.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_004450424.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_019235308.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_019235307.1
type-F conjugative transfer system protein TrbI