Neotabrizicola shimadae strain N10 plasmid unnamed4, complete sequence.
type: Entry
definition: Neotabrizicola shimadae strain N10 plasmid unnamed4, complete sequence.
sequence version: NZ_CP069374.1
sequence date: 2022-09-07
sequence: sequence
division: CON
label: NZ_CP069374.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN17704904
keyword: RefSeq
source: Neotabrizicola shimadae
organism: Neotabrizicola shimadae
taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Neotabrizicola.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP069374.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 15-MAY-2020\nAssembly Method :: Unicycler v. 0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 325.0x\nSequencing Technology :: Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/07/2022 01:45:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,272\nCDSs (total) :: 4,215\nGenes (coding) :: 4,155\nCDSs (with protein) :: 4,155\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 9 of 60\nPseudo Genes (incomplete) :: 52 of 60\nPseudo Genes (internal stop) :: 6 of 60\nPseudo Genes (multiple problems) :: 7 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16643
topology: linear
so has quality: SO_0000987
location: 1..16643
location: region:1-16643:1
RO_0002162: 2807096

NZ_CP069374
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN17704904
type: BioSample
SIO_000068: biosample

1
title: Rhodobacter shimadae sp. nov., an aerobic anoxygenic phototrophic bacterium isolated from a hot spring
author: Muramatsu, S.
author: Haruta, S.
author: Hirose, S.
author: Hanada, S.
journal: Unpublished

2
title: Direct Submission
author: Muramatsu, S.
author: Haruta, S.
author: Hirose, S.
author: Hanada, S.
journal: Submitted (03-FEB-2021) Biological Sciences, Tokyo Metropolitan University, 1-1 Minami-osawa, Hachioji, Tokyo 192-0397, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16643:1
position: 16643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16643:1:source
so part of: sequence
organism: Neotabrizicola shimadae
mol type: genomic DNA
strain: N10
isolation source: biofilm, Nakabusa hotspring
type material: type strain of Neotabrizicola shimadae
plasmid: unnamed4
country: Japan: Nakabusa Hotspring Nagano
collection date: 2016-05-28

2807096
type: Taxonomy
SIO_000068: taxonomy

JO391_RS21300
type: Gene
subclass of: SO_0000704
RO_0002162: 2807096
locus tag: JO391_RS21300
old locus tag: JO391_21280
so part of: sequence
location: 1..3441
location: region:1-3441:1
so has part: feature:1-3441:1:exon
subclass of: SO_0000010

position:3441:1
position: 3441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-3441:1:exon

JO391_RS21300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2807096
locus tag: JO391_RS21300
old locus tag: JO391_21280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012177664.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MERQGLISRFFFRTADGDRQENASEASSPRGHDAWADNATRPVHALVKSVLQEPRCLIVTGYQDFLSSLTIVLDAVHGLAERPEGSIRIVFGSNTDARRQFGGGGRSVAQEARQYFLGARGLSVVDLADLRAVLAMDAIERGIIQFRAFDPALAEAKLGRRPPMLHAKLIVGEGSALSGSANFSVNGLRRNLEFMDDAHAWPEIAKARRAVAEQFWEMGRDWTETALEILRSLIRLVTPEEALARTVHEATSFTPWRVAGNTSAGRPPQPFQADLVYEAAGTVYEHGFAFVEAPTGAGKTDIGKHLATVLPVSHAQTVFSWGERADQQRLGSLALIPASVLKNWTTNAPANFKPIKHSHLSRQKKDEAAELDEINRAVRSSASMIVDESHRLSSRYLAPSARSLVFERSPAIWTACLSATLMGNQGLDGLLAFHEKRASIYVPPMITDQINQHMAKVRARGELVRRLDQVNRRIEAQGVQEDLFHSAETLREEVGAIERQLEADGLQISALQEGLADALAPYVVRRQRACIGESANRKSGAFVYPLTRSHREDTALTDQQRQIIARIKTLAECITTGITLVSADPQRAGQTEIKFHDKSRIHIRNFLALLRASIIFAREEWARERDSDADQRGRASIGENLRRAERQNMRRLAIPEGVLPEELSPEVDDSQTPICNRITRLLNHACLDSIDETRAEVMRDILRKHGHAIFLAERVGVLEVYARLLAGARGRGPEVFVVAPGAQIKPGKKMHHIRSGAEAQEYFGIDGKHVDTMKSRAMFLTFQMAEGINLQLAPALGIIGVTSDVKSLIQGLGRIDRIDSPNSRIHYHTFDLPGLVLSSDHKARARVASIALLSGVGADDLPSELVEFAAGDLTDLVLDQIKKPRTLRSGNYFDQIEGLRRAVPPEVFERVQSAKPRGLWGAELCLLESRQPVTILLLGGRTGSPQDPTVLPPRLLAVRDDGGRAEIIGDQTEAARLLSQAYAETRHLDRHDIRPEFAQVSATLDRLRGTLGQLTHWDIRPARTVSLLASLAGFLTGRPVTDGGQGQFGDLTLPALEKLAEAWAHELDVFWIEAKEAVSQRSASGGEIPDYLGIDAIYGAFCAQPDEVRVAVRVRMHDLIGACRALSEGEPLDILSRVAVIFEAQR
SIO_010081: JO391_RS21300
subclass of: SO_0000673
so part of: JO391_RS21300
location: 1..3441
location: region:1-3441:1
so has part: feature:1-3441:1:exon

WP_220664836.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-3441:1:exon

JO391_RS21305
type: Gene
subclass of: SO_0000704
RO_0002162: 2807096
locus tag: JO391_RS21305
old locus tag: JO391_21285
so part of: sequence
location: 3720..4745
location: region:3720-4745:1
so has part: feature:3720-4745:1:exon
subclass of: SO_0000010

position:3720:1
position: 3720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4745:1
position: 4745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3720-4745:1:exon

JO391_RS21305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2807096
locus tag: JO391_RS21305
old locus tag: JO391_21285
inference: COORDINATES: protein motif:HMM:NF024685.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SIR2 family protein
translation: MKLEDLAKQCQSCTQKHPVIVLGSGASIPHGIRGMGDLAVWLRDNVQAEDGPEIDAWTLVRTAMAAGDHLEAALENKTLPDSLVTKIVRSTWDFIAQDDYRLLKSAIKAETVFPLRSLFTGLFRSTNRNIHVVTTNYDRVAEYAADTGGYIHNTGFLPGYLRRTDGAENLIFKQGTNLARTVTVWKVHGSLDWFSDPHGGVMSLPMTSELPDGLVPLIVTPGVSKYQRTHDEPFRSAIQGADRVLSAASAFICIGYGFRDSHIHPKLVTRCRVHDAPILVAARTLTPEAKAFLKNNAGRHYLALENHNDGTMVYNRDNPDGVVVTGGKYWELSTMNDLIGF
SIO_010081: JO391_RS21305
subclass of: SO_0000673
so part of: JO391_RS21305
location: 3720..4745
location: region:3720-4745:1
so has part: feature:3720-4745:1:exon

WP_220664837.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3720-4745:1:exon

JO391_RS21310
type: Gene
subclass of: SO_0000704
RO_0002162: 2807096
locus tag: JO391_RS21310
old locus tag: JO391_21290
so part of: sequence
location: 4755..6497
location: region:4755-6497:1
so has part: feature:4755-6497:1:exon
subclass of: SO_0000010

position:4755:1
position: 4755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6497:1
position: 6497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4755-6497:1:exon

JO391_RS21310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2807096
locus tag: JO391_RS21310
old locus tag: JO391_21290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011112604.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MGILDFNDDESLGKIIAVDTATVTVRVDELERLKRIQVNRLTAIRSSKAGQHLIGIVSRITRKAGDETEIIGAEEDPEAVLPENNLVRLALIGTLVDKEGLKQNIFKRTLETVPEIDADCFSVEGQRLTDFMQVISQVSGDGPQLDLGRYALDEDARAFLNGNRLFQRHAIVVGSTGSGKSYTTARLLDQIAELPQANAILFDIHGEYQTLDSDEFRHLRIAGPGDIGQDRGLTDGVLHLPFWLLGYEALISLFVDRSDQNAPNQAMLMTRCITDAKRAMLDPEQHADIRANFTIDSPVPFNIDNVYEDLARLNQEMVQGARGEKQGPYFDKLSRLIARFEAKRNDRRLGFIFQPPDACMDMAWLSEITHLLIGGRGSQGDGKGGIKIINFSEVPSDILPLMVSLIARLIFAVSQWTPPKSRHPIALFCDEAHLYIPERAPSESADEISVGIFERIAKEGRKYGVGLVVISQRPAEVNRTVLSQCNNVIAMRLTNGDDQSVIRRLLPDSLGGFGDLLPVLDIGEALVVGDASLLPTRVIVSAPRFKPNSATVDFWDRWRDAEPVAGTGDAVLSWRRQSNQ
SIO_010081: JO391_RS21310
subclass of: SO_0000673
so part of: JO391_RS21310
location: 4755..6497
location: region:4755-6497:1
so has part: feature:4755-6497:1:exon

WP_220664838.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4755-6497:1:exon

JO391_RS21315
type: Gene
subclass of: SO_0000704
RO_0002162: 2807096
locus tag: JO391_RS21315
old locus tag: JO391_21295
so part of: sequence
location: 6702..7934
location: region:6702-7934:1
so has part: feature:6702-7934:1:exon
subclass of: SO_0000010

position:6702:1
position: 6702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7934:1
position: 7934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6702-7934:1:exon

JO391_RS21315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2807096
locus tag: JO391_RS21315
old locus tag: JO391_21295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004129287.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MAKLRDLEISDRQREDSVAILVGPNGSGKSTFLRALAESYRHENVIAVSNTPHDRFARMRGIRRISAGRPDHTPPNIVKRAVARSLDADDSSFHQISAIMDYCGYAPRFGFRIEKAKHFGSSFDDLQWKLDSTRSGATVEDVAWDGEPDYVEQLHRALAFLSRHDPREFVWIDATRSAFEFSLAREFVAVLRCEAILRRLKVIGLLEVMLQREDPRHTVIEMRLASSGQLALISSLLFLITEAGRGAIILVDEPENSLHPSWQREYVDKLMAAMAYRNATLIVATHAPLVVTGALSDAPNKVSVFRVRDGRPARLEIDASAAPNSIEEILWEAFGVVTPANHFVSEEIVRAISRFEKDETGKEEVLQLIGALEERSFDDQQHRFFEAVRKLVDKVERAKAGIDDGDDGFA
SIO_010081: JO391_RS21315
subclass of: SO_0000673
so part of: JO391_RS21315
location: 6702..7934
location: region:6702-7934:1
so has part: feature:6702-7934:1:exon

WP_220664839.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6702-7934:1:exon

JO391_RS21320
type: Gene
subclass of: SO_0000704
RO_0002162: 2807096
locus tag: JO391_RS21320
old locus tag: JO391_21300
so part of: sequence
location: 7906..8583
location: region:7906-8583:1
so has part: feature:7906-8583:1:exon
subclass of: SO_0000010

position:7906:1
position: 7906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8583:1
position: 8583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7906-8583:1:exon

JO391_RS21320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2807096
locus tag: JO391_RS21320
old locus tag: JO391_21300
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: HNH endonuclease
translation: MTTEMMALPDPYVPSLDTCVFTEDEKAAIAKAIATQKPWDWKPGGAEEANLVAAKVKIRDLHRARHGDRCCYCRFPLHGGGHFIVDPEHVLPKSLAAYRPLAYTVWNLGIACKRCNMQYKRAKIDFVVDAVSAAALQDSANYRLVHPNFDLYKEHISISIEMNDDVTLIKYTKQPGSEKGPYTYDYFNLKEREVGSFDAAQGLDVPDDLGKGAQEAQELARKFGQ
SIO_010081: JO391_RS21320
subclass of: SO_0000673
so part of: JO391_RS21320
location: 7906..8583
location: region:7906-8583:1
so has part: feature:7906-8583:1:exon

WP_220664840.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7906-8583:1:exon

JO391_RS21325
type: Gene
subclass of: SO_0000704
RO_0002162: 2807096
locus tag: JO391_RS21325
old locus tag: JO391_21305
so part of: sequence
location: 9280..10050
location: region:9280-10050:1
so has part: feature:9280-10050:1:exon
subclass of: SO_0000010

position:9280:1
position: 9280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10050:1
position: 10050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9280-10050:1:exon

JO391_RS21325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2807096
locus tag: JO391_RS21325
old locus tag: JO391_21305
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSDILPFCQVKLQYLLDLVLDQSLDDNAFRIAAYLALTHADHDTGECHPSFETIGTALGRHAKSVKRALNKPEMARHLTVVRGTNRGNASRYRPTEAALRRATQRRREGDKIVPLSRAKGGQSCPPEGTYLSGKGGQERPPNKEKELKPRTAAAAPDLPEKGQSGTATARSAPPSPLVFVPQGICFARDWNDRLAQEGLATLDRNLPLVVNGHHRGFWVPARSPAPRGSPEWRDQVRRLRCLAGKESGQMEQRHAG
SIO_010081: JO391_RS21325
subclass of: SO_0000673
so part of: JO391_RS21325
location: 9280..10050
location: region:9280-10050:1
so has part: feature:9280-10050:1:exon

WP_220664841.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9280-10050:1:exon

JO391_RS21330
type: Gene
subclass of: SO_0000704
RO_0002162: 2807096
locus tag: JO391_RS21330
old locus tag: JO391_21310
so part of: sequence
location: 10185..10502
location: region:10185-10502:1
so has part: feature:10185-10502:1:exon
subclass of: SO_0000010

position:10185:1
position: 10185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10502:1
position: 10502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10185-10502:1:exon

JO391_RS21330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2807096
locus tag: JO391_RS21330
old locus tag: JO391_21310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010138538.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobC family plasmid mobilization relaxosome protein
translation: MFRCTAAEKAELRQKAEAAGVPVATLLREALGRTDARRRKPAPRVDPALVLAVGRIGGNLNQIARWLNRAHAAGLTPTVDAVEVARRLLSVERQLAQILAQGREC
SIO_010081: JO391_RS21330
subclass of: SO_0000673
so part of: JO391_RS21330
location: 10185..10502
location: region:10185-10502:1
so has part: feature:10185-10502:1:exon

WP_259444948.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10185-10502:1:exon

JO391_RS21655
type: Gene
subclass of: SO_0000704
RO_0002162: 2807096
locus tag: JO391_RS21655
pseudo: true
so part of: sequence
location: 10781..>10969
location: region:10781-10969:1
so has part: feature:10781-10969:1:exon
subclass of: SO_0000010

position:10781:1
position: 10781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10969:1
position: 10969
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10781-10969:1:exon

JO391_RS21655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2807096
locus tag: JO391_RS21655
inference: COORDINATES: protein motif:HMM:NF015397.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
SIO_010081: JO391_RS21655
subclass of: SO_0000673
so part of: JO391_RS21655
location: 10781..>10969
location: region:10781-10969:1
so has part: feature:10781-10969:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10781-10969:1:exon

JO391_RS21660
type: Gene
subclass of: SO_0000704
RO_0002162: 2807096
locus tag: JO391_RS21660
so part of: sequence
location: 11247..11714
location: region:11247-11714:1
so has part: feature:11247-11714:1:exon
subclass of: SO_0000010

position:11247:1
position: 11247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11714:1
position: 11714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11247-11714:1:exon

JO391_RS21660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2807096
locus tag: JO391_RS21660
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTGRPTPRLSERLNADLEALRHENAALMASQLQSFRRDLTAIATHARDTIEADTRMFLHATSGTMQSFQHQITRWMTLAPVILLATATAAITALLVLSWFWSAMLSKSELTRLGLQRIDQGGTTYLLTDPARASIQTCAISDQRSVLCIQIKEK
SIO_010081: JO391_RS21660
subclass of: SO_0000673
so part of: JO391_RS21660
location: 11247..11714
location: region:11247-11714:1
so has part: feature:11247-11714:1:exon

WP_259444950.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11247-11714:1:exon

JO391_RS21665
type: Gene
subclass of: SO_0000704
RO_0002162: 2807096
locus tag: JO391_RS21665
so part of: sequence
location: 11715..12017
location: region:11715-12017:1
so has part: feature:11715-12017:1:exon
subclass of: SO_0000010

position:11715:1
position: 11715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12017:1
position: 12017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11715-12017:1:exon

JO391_RS21665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2807096
locus tag: JO391_RS21665
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQTPLTALERELLGYVERLATASETSAQALRALEARSTNRLGLRMDGLVDCVALLIQSQIESMTALRGLLSEAANYRAIDRQLSESLKQAKAAEERLKRR
SIO_010081: JO391_RS21665
subclass of: SO_0000673
so part of: JO391_RS21665
location: 11715..12017
location: region:11715-12017:1
so has part: feature:11715-12017:1:exon

WP_259444951.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11715-12017:1:exon

JO391_RS21340
type: Gene
subclass of: SO_0000704
RO_0002162: 2807096
locus tag: JO391_RS21340
old locus tag: JO391_21320
so part of: sequence
location: 12227..13426
location: region:12227-13426:1
so has part: feature:12227-13426:1:exon
subclass of: SO_0000010

position:12227:1
position: 12227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13426:1
position: 13426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12227-13426:1:exon

JO391_RS21340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2807096
locus tag: JO391_RS21340
old locus tag: JO391_21320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019296421.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fic family protein
translation: MSTDTLTDKGEAITIVEPLIPEEASRYRAPLNDLAVELASQSSGLRSSLPEGICAPLADLVRSMNCYYSNLIEGHNTHPIDIERALNKDFSADAEKRNLQLEAVAHIEVQRWIDTGGLTDHPLAPESLREIHRRFCQNLPQELLVVHRPDGTELPIVPGVFRTDFVQVGKHVAPSPGAVPRLLAHMRKMYGLQGRSGAIIATACAHHRLVWVHPFVDLNGRVSRMVAHAMLRESVGSEGLWSAARGLARRDAEYKQRLMAADEPRHGGADGRGNLSEQRLAEFASFFLEACIDQVRFMQTLMQPQRLRERIMAWCKAEMAKGTLSKGADIVMREALMSGELERGALPGLLGVSDRQARKVTAELLAVGALKSDTQRAPLRLSFPARLASDWMPGLFPER
SIO_010081: JO391_RS21340
subclass of: SO_0000673
so part of: JO391_RS21340
location: 12227..13426
location: region:12227-13426:1
so has part: feature:12227-13426:1:exon

WP_220664844.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12227-13426:1:exon

JO391_RS21345
type: Gene
subclass of: SO_0000704
RO_0002162: 2807096
locus tag: JO391_RS21345
old locus tag: JO391_21325
so part of: sequence
location: 13836..16577
location: region:13836-16577:1
so has part: feature:13836-16577:1:exon
subclass of: SO_0000010

position:13836:1
position: 13836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16577:1
position: 16577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13836-16577:1:exon

JO391_RS21345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2807096
locus tag: JO391_RS21345
old locus tag: JO391_21325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012177665.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3427 domain-containing protein
translation: MAMLADVGAALGRGTPGFVASSAHDHFHLREGSGSRLTTGGRDPLLPLLTERLDTAKSVDLAIAFAMDSGVALLEPWFREMLARGGRLRIVVGDYLETTDPTALARLLDLEGAELFVFETGGLSFHPKAWLFRAADARGAAIVGSSNLSQSALTEGVEWNLHSEDAADSVAAAFEDLVARPEVKPLTSAWIDAYANRRRARPMPEFTARVVAEEGPPPEPHSIQQEALEALTLSRSNGHRAGLVVLATGLGKTWLAAFDTIRAKAGRILFVAHRDEILTQAMAAFRKVRPEAKLGRYTGTEKEADAEILFASVQTLGRIGHLRQFDPDHFDYIVVDEFHHAAASTYQKLISHFTPRFLLGLTATPDRTDGADLLGLCGENLVYQCDLFRGIDAGHLSPFHYFGVPDDVDYAQIPWRSGQFDPTALDAALATEARALNALEQHRKRASGPAIGFCCSMRHADYMADYFRSAGLKAVAVHSGQSSAPRASSLAALGRGEIDILFAVDMFNEGVDVPEIGTVLMLRPTESAIIWLQQLGRGLRRVEGKVLQVIDYIGNHRSFLTKVATLLQAGAGDRSISTKLEALQAGEFQMPKGCEITYELQVVDILRTLLRPKEGTAELEAFYIDFRDRSGIRPTAVEVFRNGFDPRASGHGGWFDFVRDMGDAVPVRPFATHGRLLHEMERPRGLSRAALTGLRDIVAGRQPTEGAEDLAFNPHLAQNGAILRLTRPDASGELEPLARELIEWRLAETPLAREAAEGSATIVGKPQSLELWQRYYVPEIAEFFGEEYKQNLWRTGMKALPEKKIMILLANVSTQDLTYENAFLSPSRLNWFSQNQTRQNSKHGRVISGEEGHDVHLFVRRGNKVNGKVNPFIYCGQPKFVDWTGEKPIEVTWELPVPAPRALWAELGITEDD
SIO_010081: JO391_RS21345
subclass of: SO_0000673
so part of: JO391_RS21345
location: 13836..16577
location: region:13836-16577:1
so has part: feature:13836-16577:1:exon

WP_259444949.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13836-16577:1:exon