Bifidobacterium pseudocatenulatum strain YIT11953 plasmid unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
Xylan utilisation by Bifidobacterium pseudocatenulatum
Submitted (09-JUL-2021) Basic Research Department, Yakult Central Institute, 5-11, Kunitachi-shi, Tokyo 1868650, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nCP079234.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 196.8223093598884x\nSequencing Technology :: Illumina MiSeq + PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/29/2022 05:28:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,864\nCDSs (total) :: 1,789\nGenes (coding) :: 1,762\nCDSs (with protein) :: 1,762\nGenes (RNA) :: 75\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 3\nPseudo Genes (total) :: 27\nCDSs (without protein) :: 27\nPseudo Genes (ambiguous residues) :: 0 of 27\nPseudo Genes (frameshifted) :: 10 of 27\nPseudo Genes (incomplete) :: 21 of 27\nPseudo Genes (internal stop) :: 2 of 27\nPseudo Genes (multiple problems) :: 5 of 27\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013235.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007056229.1
COORDINATES: similar to AA sequence:RefSeq:WP_007056227.1