Sporisorium graminicola strain CBS 10092 chromosome SGRAM, whole genome shotgun sequence.
type: Entry
definition: Sporisorium graminicola strain CBS 10092 chromosome SGRAM, whole genome shotgun sequence.
sequence version: NC_043718.1
sequence date: 2019-07-12
sequence: sequence
division: CON
label: NC_043718.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA554127
dblink: SAMN10959236
keyword: WGS
keyword: RefSeq
source: Sporisorium graminicola
organism: Sporisorium graminicola
taxonomy: Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Sporisorium.
reference: 1
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM016668.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 26-MAR-2015\nAssembly Method :: HGAP v. 3.0\nAssembly Name :: PGRAM_IIB_1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 185287
topology: linear
so has quality: SO_0000987
location: 1..185287
location: region:1-185287:1
RO_0002162: 280036

NC_043718
type: RefSeq
SIO_000068: refseq

PRJNA554127
type: BioProject
SIO_000068: bioproject

SAMN10959236
type: BioSample
SIO_000068: biosample

1
title: Sporisorium graminicola CBS 10092 draft sequencing and annotation
author: Solano-Gonzalez, S.
author: Caddick, M.X.
author: Darby, A.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (12-JUL-2019) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Solano-Gonzalez, S.
author: Caddick, M.X.
author: Darby, A.
journal: Submitted (14-MAY-2019) Functional and Comparative Genomics, University of Liverpool, Institute of Integrative Biology, Life Sciences Building, Crown Street, Liverpool, Merseyside L697ZB, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:185287:1
position: 185287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-185287:1:source
so part of: sequence
organism: Sporisorium graminicola
mol type: genomic DNA
strain: CBS 10092
isolation source: leaves of herbaceous plant
host: Phleum pratense
culture collection: CBS:10092
type material: type material of Sporisorium graminicola
chromosome: SGRAM
country: Russia:Moscow
lat lon: 55.45 N 37.37 E
collection date: Jun-2002

280036
type: Taxonomy
SIO_000068: taxonomy

EX895_000001
type: Gene
subclass of: SO_0000704
RO_0002162: 280036
locus tag: EX895_000001
so part of: sequence
location: <94289..>97297
location: region:94289-97297:1
so has part: feature:94289-97297:1:exon
subclass of: SO_0000010

40722896
type: Gene
SIO_000068: ncbigene

position:94289:1
position: 94289
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:97297:1
position: 97297
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94289-97297:1:exon

EX895_000001
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 280036
locus tag: EX895_000001
product: uncharacterized protein
transcript id: XM_029880603.1
SIO_010081: EX895_000001
subclass of: SO_0000673
so part of: EX895_000001
location: <94289..>97297
location: region:94289-97297:1
so has part: feature:94289-97297:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:94289-97297:1:exon

EX895_000001
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 280036
locus tag: EX895_000001
codon start: 1
product: hypothetical protein
translation: MDSSGRGAALRDLVDASNLLGHLDLVTSPPDPNLQPRQCLQLVLEHAFKKRGCQPAQSSSSPTSASFSDSLFQGPGLELLSLFLRTHKRVFTKKLSADDDADVDITAQSSAHAKVLPVIQSSGFGKSRLCVQLSTLYPGMLVCLRELGGDQASFPPQDSQAFEYFEQSRQLASRHTDFDKVDAQLHILSWLALYCDTMAHYLDMFKQASGCFDVQHGCPAAQHQACWSTVVFHLALAIHSSPSSRFVPESHFDNIDPASMCSRAKANLDPLVRSPPSHPMPASTPPVFRLADETNAAVDDVSRARQRAPPLSTFRFRTALLNHISRHAHDLYQVLQVTCGTATTSATMRIRAALGQYLSPAIRGLENLAPRLPTPSFAFIALDECGYFIDLLPIVRRLWFQARPAATWILLIDTNVDLAPPTSVDAFYKASRRLDIENMFQLCRPFLAMPTDVNLSKDDLTAILQLALPADGHNLSLRDLNLLLPKMGRPLWYDAIYQSEGVLRPHNIISKLVFPAGWQWPSSTPPAFSTGIDENALALASQRIRIELTANSGTKFVHTFLQRQISEHLRYVGLISTTSETIVTSNPSEPALCAAVAWFFRLPGPDLMCKWGLVVHALVNARAPLGMDVGAQGEQGVMLLCTMAADLAATAMYSAQLSVSEVVPASAEVMYEAVVAPTRLSDWLKTLIGERYVRVSWPPENNKGDKMADDDVDAANYEGAAQTPNQSAHGQSPADAEDTSLAEFDSWAQQAWINFKHVVVLDKLVDHEAIDPMLLPELWLRHAAAQGPSSQPGWDLLIPVYHCASSNKPPIGAERFDAQKMSYVAIQVKNWSSAVPVKIKNGPVGPKLMGLMQPTQCVELFLELGAPCHETGHEYSIRRFPPLAPPHQSPAAAAAAGRQTGRGKKRAPDVEPIEPDTPVLLRHHFYVRGSEATTFPLISQLRPDYQHFISLLLGRFETVSDFEFEKAKNQLVRGSSKQHQAAWQAEEHRRQGLLVRVGNLSN
SIO_010081: EX895_000001
subclass of: SO_0000673
so part of: EX895_000001
location: 94289..97297
location: region:94289-97297:1
so has part: feature:94289-97297:1:exon

XP_029743051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:94289-97297:1:exon

EX895_000002
type: Gene
subclass of: SO_0000704
RO_0002162: 280036
locus tag: EX895_000002
pseudo: true
so part of: sequence
location: complement(<103984..>104856)
location: region:103984-104856:-1
so has part: feature:103984-104856:-1:exon
subclass of: SO_0000010

40722897
type: Gene
SIO_000068: ncbigene

position:103984:-1
position: 103984
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:104856:-1
position: 104856
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103984-104856:-1:exon

EX895_000002
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 280036
locus tag: EX895_000002
product: uncharacterized protein
pseudo: true
SIO_010081: EX895_000002
subclass of: SO_0000673
so part of: EX895_000002
location: complement(join(<103984..104229,104293..104526,104629..>104856))
location: region:103984-104856:-1
so has part: feature:104629-104856:-1:exon
so has part: feature:104293-104526:-1:exon
so has part: feature:103984-104229:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:104629-104856:-1:exon

position:104629:-1
position: 104629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:104293-104526:-1:exon

position:104293:-1
position: 104293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:104526:-1
position: 104526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:103984-104229:-1:exon

position:104229:-1
position: 104229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

EX895_000002
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 280036
locus tag: EX895_000002
pseudo: true
codon start: 1
product: hypothetical protein
SIO_010081: EX895_000002
subclass of: SO_0000673
so part of: EX895_000002
location: complement(join(<103984..104229,104293..104526,104629..>104856))
location: region:103984-104856:-1
so has part: feature:104629-104856:-1:exon
so has part: feature:104293-104526:-1:exon
so has part: feature:103984-104229:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:104629-104856:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:104293-104526:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:103984-104229:-1:exon

EX895_000003
type: Gene
subclass of: SO_0000704
RO_0002162: 280036
locus tag: EX895_000003
so part of: sequence
location: complement(<105201..>108058)
location: region:105201-108058:-1
so has part: feature:105201-108058:-1:exon
subclass of: SO_0000010

40722898
type: Gene
SIO_000068: ncbigene

position:105201:-1
position: 105201
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:108058:-1
position: 108058
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:105201-108058:-1:exon

EX895_000003
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 280036
locus tag: EX895_000003
product: uncharacterized protein
transcript id: XM_029880604.1
SIO_010081: EX895_000003
subclass of: SO_0000673
so part of: EX895_000003
location: complement(join(<105201..106288,106393..>108058))
location: region:105201-108058:-1
so has part: feature:106393-108058:-1:exon
so has part: feature:105201-106288:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:106393-108058:-1:exon

position:106393:-1
position: 106393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:105201-106288:-1:exon

position:106288:-1
position: 106288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

EX895_000003
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 280036
locus tag: EX895_000003
codon start: 1
product: hypothetical protein
translation: MAASLHPFPSLPAQDGGTPSWQRQADPFQDTQQALTVPLADLCLRTFLARQIQHPPARPNTGMPEMLFDASQEPARQGSMQAALPAWDRMLASYPDQRVAQNLLGAIKHGILVGYSGPLQQCGRFESIKNLPMDQAGRQHVDAEIQLRVAEGRLQEVDAHQRQLVCSPIGTVPKPRSTKLRTIHHLSHPRRPLSGQLHSVNDGINPAFTRIKYASLLPLIEYIRDNVGCLLWKSDLVDAFRHIVVSNGDARLLGFKFNNRYFMETSLTFGGRSSPWLFNLFAEMVHWLVSTTTTHLVEHYLDDFFGAVPSDDNPGAPLHSLALACAALGLQPSPAKTFSGVTRLEVLEIELDTMQQTVGITAERKERILAAIDHLLSRRSATLLDWQRIAGLLQFVSQVIPHAKAYLRRLYDAVRRAHQHPQQRRRLSGPAVAELRWWRSTLSSWTGHTMLQPSPLVVKHIWTDASKRAYGGHLGTMNDPCSVYSKEVSRRHRAKDIRFLEALAVLDALRIFSQTWSGPCLVVLHVDNTNVEYGLRSGRSRDPLTQTLLRAVFELFPKSARLALPPPGRSVQHASPPPHFVTATGCSTAAAKLIWHGLAASTRSRGAESVNRYQTFVLRRFGPSCQAVPASGLLLVEWVADMASTRSYHSIKHELHALQSWHIDLGFDTGGFACGRLERAIRGVKRIFGLKPATAKLPITLPLLRAILQQLRSIHSLSAWNRQVVSAAFAVSFACFLRCGEVTWTSLDHSVTTIGAITWYEEYAILVLPASKTDPFRLGAPLVLPKVGGIECPYAALKSICPAQRPAAAPVFGINDGFQPLTRSFFLSILRLALDRLGLQPSHYAGHSFRRGAATWAASAGIDSSTIQLLGRWSSDCYRRYIDRSAVERRSMVASALFSVRDGPLVPASVSWRDPVL
SIO_010081: EX895_000003
subclass of: SO_0000673
so part of: EX895_000003
location: complement(join(105201..106288,106393..108058))
location: region:105201-108058:-1
so has part: feature:106393-108058:-1:exon
so has part: feature:105201-106288:-1:exon

XP_029743052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:106393-108058:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:105201-106288:-1:exon

EX895_000004
type: Gene
subclass of: SO_0000704
RO_0002162: 280036
locus tag: EX895_000004
so part of: sequence
location: complement(<108282..>109709)
location: region:108282-109709:-1
so has part: feature:108282-109709:-1:exon
subclass of: SO_0000010

40722899
type: Gene
SIO_000068: ncbigene

position:108282:-1
position: 108282
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:109709:-1
position: 109709
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108282-109709:-1:exon

EX895_000004
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 280036
locus tag: EX895_000004
product: uncharacterized protein
transcript id: XM_029880605.1
SIO_010081: EX895_000004
subclass of: SO_0000673
so part of: EX895_000004
location: complement(<108282..>109709)
location: region:108282-109709:-1
so has part: feature:108282-109709:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:108282-109709:-1:exon

EX895_000004
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 280036
locus tag: EX895_000004
codon start: 1
product: hypothetical protein
translation: MDLTAILAALSAVHSPAAPAQHTTTPAQPLIACRTCKLPQPASQFVHQRFPNKTVLNCFGCRSLITPNPTPVSRRQVARAAPRAAPVPTRLPTALQRLPVVAPAPPQQQRPPPVVPQPTPVATHHTAAEPLVAAPAATHPPAVQPFPAVQAQVQPTPAFGTVGALAPVVTHADLAELRQTLQDDLTDTLRDLLAAHFANAAAPAQPNVPAAHLAPASVPAAAPLPTPTFQPVVPAAPIPPGESLANLTGFPWVTPDLADKVYNDTLPAQELHRLANPAWLPADPEESTGFTVNGIVFGKPATSLSSSRQFAKALPNFASFWRVWIVYMQLRASASSDRGLGIALGTFLHHIYEVEQVFPWSRVVDYILTVCIKRFGRSSSADWLNTDSNAHFASFQGVQGRVAPSSSTPGSKRPAPKDDDPRRKQVCFSWNNGKCSGTEKRPCIRLHVCSKCNAPHQSKTCQSTADSGSGIKKQA
SIO_010081: EX895_000004
subclass of: SO_0000673
so part of: EX895_000004
location: complement(108282..109709)
location: region:108282-109709:-1
so has part: feature:108282-109709:-1:exon

XP_029743053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:108282-109709:-1:exon