Lysobacter arenosi strain R7 chromosome, complete genome.
type: Entry
definition: Lysobacter arenosi strain R7 chromosome, complete genome.
sequence version: NZ_CP071517.1
sequence date: 2023-04-29
sequence: sequence
division: CON
label: NZ_CP071517.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14683410
keyword: RefSeq
source: Lysobacter arenosi
organism: Lysobacter arenosi
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP071517.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 10-FEB-2021\nAssembly Method :: Unicycler v. Aug-2018\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 863x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/29/2023 03:06:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,604\nCDSs (total) :: 3,544\nGenes (coding) :: 3,433\nCDSs (with protein) :: 3,433\nGenes (RNA) :: 60\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 111\nCDSs (without protein) :: 111\nPseudo Genes (ambiguous residues) :: 0 of 111\nPseudo Genes (frameshifted) :: 65 of 111\nPseudo Genes (incomplete) :: 46 of 111\nPseudo Genes (internal stop) :: 7 of 111\nPseudo Genes (multiple problems) :: 7 of 111\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 3947892
topology: circular
so has quality: SO_0000988
location: 1..3947892
location: region:1-3947892:1
RO_0002162: 2795387

NZ_CP071517
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14683410
type: BioSample
SIO_000068: biosample

1
title: Lysobacter arenosi sp. nov., isolated from soil of gangwondo yeongwol, south Korea
author: Kim, K.R.
author: Kim, K.H.
author: Jeon, C.O.
journal: Unpublished

2
title: Direct Submission
author: Kim, K.R.
author: Kim, K.H.
author: Jeon, C.O.
journal: Submitted (16-FEB-2021) Department of Life Science, Chung-Ang University, 84,HeukSeok-Dongjak-Gu, Seoul 156-756, South Korea

3
title: Direct Submission
author: Kim, K.R.
author: Kim, K.H.
author: Jeon, C.O.
journal: Submitted (14-DEC-2020) Department of Life Science, Chung-Ang University, 84, HeukSeok-Dongjak-Gu, Seoul 156-756, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3947892:1
position: 3947892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3947892:1:source
so part of: sequence
organism: Lysobacter arenosi
mol type: genomic DNA
strain: R7
isolation source: soil
type material: type strain of Lysobacter arenosi
country: South Korea: Yeongwol-gun, Gangwon-do
collection date: 2019-05-16

2795387
type: Taxonomy
SIO_000068: taxonomy

HIV01_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00005
old locus tag: HIV01_000005
so part of: sequence
location: complement(152..1552)
location: region:152-1552:-1
so has part: feature:152-1552:-1:exon
subclass of: SO_0000010

position:152:-1
position: 152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1552:-1
position: 1552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:152-1552:-1:exon

HIV01_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00005
old locus tag: HIV01_000005
EC number: 4.3.1.17
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014161485.1
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]
GO process: GO:0009063 - amino acid catabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: L-serine ammonia-lyase
translation: MAVSSFDLFKIGIGPSSSHTVGPMRAAARFVQRWLVEGGNGEAGNDLQRTARIRAEVFGSLALTGRGHGTDKAVLMGLEGHLPNQIDPDIIAPALERIRANKRINLHGQHEIGFDEKHDLIMNKRQKLPFHTNGMRFTAFDADGNVIATRDYYSVGGGFVVNQDEAAEDRIVADETEQPYPFRSGDELLARSRESGLSIAQMMYANEKVWRTPEEIDAGLDEIWEAMQACVGRGIRAHGTLPGGLHVSRRAPTLHAELTSRPEAAMRDPLTTLDWVNLYALAVNEENAAGGRVVTAPTNGAAGIIPSVLHYYDRFCPGANIQGVRTFLLTAAAVGILYKENASISGAEVGCQGEVGVACSMAAAGLTAAIGGSSSQIENAAEIGMEHNLGLTCDPIGGLVQIPCIERNAMGAVKAINASRMAMRGDGKHKVSLDKVIKTMRDTGRDMQDKYKETSRGGLAVNVIEC
SIO_010081: HIV01_RS00005
subclass of: SO_0000673
so part of: HIV01_RS00005
location: complement(152..1552)
location: region:152-1552:-1
so has part: feature:152-1552:-1:exon

WP_200604255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:152-1552:-1:exon

HIV01_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00010
old locus tag: HIV01_000010
so part of: sequence
location: 1668..1946
location: region:1668-1946:1
so has part: feature:1668-1946:1:exon
subclass of: SO_0000010

position:1668:1
position: 1668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1946:1
position: 1946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1668-1946:1:exon

HIV01_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00010
old locus tag: HIV01_000010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005410674.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glutaredoxin family protein
translation: MPHSQHDSIPAAAPALTLFQRDDCHLCDLALEVLAMARVPEFETVFIDDDDGLEQRYGVRVPVLRDEGRGIELDWPFDLERLQAFLAVETPA
SIO_010081: HIV01_RS00010
subclass of: SO_0000673
so part of: HIV01_RS00010
location: 1668..1946
location: region:1668-1946:1
so has part: feature:1668-1946:1:exon

WP_200604256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1668-1946:1:exon

HIV01_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00015
old locus tag: HIV01_000015
so part of: sequence
location: complement(1975..2547)
location: region:1975-2547:-1
so has part: feature:1975-2547:-1:exon
subclass of: SO_0000010

position:1975:-1
position: 1975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2547:-1
position: 2547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1975-2547:-1:exon

HIV01_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00015
old locus tag: HIV01_000015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019660060.1
GO component: GO:0042597 - periplasmic space [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YceI family protein
translation: MSILAIRRFTLATATAAALLVAAPSFAANYQQAAGSSLTFASKYEGEVFTGRFPGFVTTFSFDPAQLATAKLDVSIPLASATTANTDRDDALKGSDFFASGKFPQARYTATKFRSLGGNQYAADGALSLRGVSKPVTLTFTWTPGAQPVLNGKATVKRLDFGVGTGDWADTALIPNEVAISTKVVFAPAK
SIO_010081: HIV01_RS00015
subclass of: SO_0000673
so part of: HIV01_RS00015
location: complement(1975..2547)
location: region:1975-2547:-1
so has part: feature:1975-2547:-1:exon

WP_200604257.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1975-2547:-1:exon

HIV01_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00020
old locus tag: HIV01_000020
so part of: sequence
location: complement(2547..3128)
location: region:2547-3128:-1
so has part: feature:2547-3128:-1:exon
subclass of: SO_0000010

position:3128:-1
position: 3128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2547-3128:-1:exon

HIV01_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00020
old locus tag: HIV01_000020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005410672.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO process: GO:0022904 - respiratory electron transport chain [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome b
translation: MTLKNTADRWGSVSQLLHWLIVLLILGLGVIGLVMVELPKSPRYFWVYDLHKSFGITVLALMVLRLVWRLFAGAPKAVSGTPHWQHRIATVTHGLLYALTFAVPLSGWLYDSVSGLRPMRWFGLFKMPKIASPSQELQPLVRDWHEWLFWILIALVAVHAAAALYHHLFQRDDTLSRMLPGRRRASSPVPEIR
SIO_010081: HIV01_RS00020
subclass of: SO_0000673
so part of: HIV01_RS00020
location: complement(2547..3128)
location: region:2547-3128:-1
so has part: feature:2547-3128:-1:exon

WP_200604258.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2547-3128:-1:exon

HIV01_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00025
old locus tag: HIV01_000025
so part of: sequence
location: complement(3125..3877)
location: region:3125-3877:-1
so has part: feature:3125-3877:-1:exon
subclass of: SO_0000010

position:3125:-1
position: 3125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3877:-1
position: 3877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3125-3877:-1:exon

HIV01_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00025
old locus tag: HIV01_000025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009600131.1
GO component: GO:0042597 - periplasmic space [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YceI family protein
translation: MPRICPLSLASVLVVLSAAPVLAMAAPPQTWSLDPVHTRVMFAVEHAGFSHALGTISGSTGTLVFDRDDWKSARLDVQVPLQRLDLGDAKWNKAVLATNLIDAEHHPQAHFVSSSVEPVDADHAKVCGELTLRGVTRPLCMDVTLNAVKRHPLPPFHRTAGFSATATLSRAEFGITAWKNVIGDRVDLRIEAEALRDRGAGEPAEAAAPAEDAAPSAEPTSTEPGSQEPASQEPASQEPATQEPPPETNP
SIO_010081: HIV01_RS00025
subclass of: SO_0000673
so part of: HIV01_RS00025
location: complement(3125..3877)
location: region:3125-3877:-1
so has part: feature:3125-3877:-1:exon

WP_200604259.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3125-3877:-1:exon

HIV01_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00030
old locus tag: HIV01_000030
so part of: sequence
location: 4067..7603
location: region:4067-7603:1
so has part: feature:4067-7603:1:exon
subclass of: SO_0000010

position:4067:1
position: 4067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7603:1
position: 7603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4067-7603:1:exon

HIV01_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00030
old locus tag: HIV01_000030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010344162.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MRTPAIPTVMLALLLACTALVPAKAAIPETPRPRQITVADGLPSNRINGITEDHNGYLWIATSDGLARYDGIGFRIWRAEHGLRDNFVWAVHVDARNRVWIGTSQAGLAMLDADRKQFRYFNRSNTPQMGSDTVWAVTSTPDGAIWFGTSFGGLHRLDADGKVTRFMPRPGDPRSLPDAEVGQLVVAPDGSLWAGTKGGVARWTGRDFERLPPNALSSPLVNGITAESDGTLWFATPRGVGVRHVDGSVSATPWADVGMKDSILHVLLRDRSGMYWFDVPQGLGRDEHGKLSVVPLYSGTAQGLVRPGWVGAYQDREGGLWFASSSNGLWYLAANWRQFAVMSRRIDDATSLANAHVRGIAPSADGAMWLVGSGGVLDRLDPDSGTVTHVVRDVGDGYILSHVLEDRSGTVWVSYVGGIARIEAGTHRLRRWSADDENDPAPAGESKLVETGDGLIWLITEDGVMQVRSPDGRIRESLVPGAAIGLDSDVFIEQAGLGPDGALWLAGSNGMSRWNSGKHRFEPIPGAGRDRVHGFAADARGQVWLARLGELESYRWAGGTLQRQWRMGTDDGLPLVAAGGLSVDAAGMVWMSSVRGLTRVDPERRAVRVYGVRDGLPSQEFDIAPVTSPRDGKILVGSPEGLVLFDPATVRPNTQAPHLVIESIDARRNDRRISYFPARPFEIRHDDRDLRIVARLLSFNDARNHAYRFRLAGYDSNWVDVGAVGERVFSQLKPGQYELQVAARTADNVWSRAQTIAFTVAAPWWQTWAAIAGFVGLAALLGWWAADAYRRRLKRRHDWQLAQQERELAKQASLAKTQFLATLGHEVRTPMTGVLGMSELLLDTPLDGRQRGYVDSIRRAGRHLLRLVNDALDLARIESGRLELADAPFALHGVVDEAASLMAPLAQQRGLAFNTDLGADAPAGLRGDANRVCQILLNLLGNAIKFTEKGSVSLRVSALSPHGVRFEVADTGPGISEEQLARLFRRFEQAEGMRTAARYGGSGLGLAICQELAEAMGGGIRVESTPGEGARFIVDLPLVEAPAPAAHDGGDALLASRGGPLTLLLVEDDPTVAEVITGLLRAQGHRVTHAAHGLSALTEAATASFDAALLDLDLPGMDGLALAEHLRAQGFSRPLLAITARADADAEPQATAAGFHGFLRKPVTGAMLAGLLEGVPRR
SIO_010081: HIV01_RS00030
subclass of: SO_0000673
so part of: HIV01_RS00030
location: 4067..7603
location: region:4067-7603:1
so has part: feature:4067-7603:1:exon

WP_245156869.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4067-7603:1:exon

HIV01_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00035
old locus tag: HIV01_000035
so part of: sequence
location: 7671..7964
location: region:7671-7964:1
so has part: feature:7671-7964:1:exon
subclass of: SO_0000010

position:7671:1
position: 7671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7964:1
position: 7964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7671-7964:1:exon

HIV01_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00035
old locus tag: HIV01_000035
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRVLIVIGACVALLHSLPVRADCTLAFAPPEIRQAASEHYYRSFKRDATPPGRLPSAERHDEVRNPETGNTRSDNVRNLGAPPSTDRLQPSPTASGE
SIO_010081: HIV01_RS00035
subclass of: SO_0000673
so part of: HIV01_RS00035
location: 7671..7964
location: region:7671-7964:1
so has part: feature:7671-7964:1:exon

WP_200604260.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7671-7964:1:exon

HIV01_RS00040
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00040
old locus tag: HIV01_000040
so part of: sequence
location: 8060..8842
location: region:8060-8842:1
so has part: feature:8060-8842:1:exon
subclass of: SO_0000010

position:8060:1
position: 8060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8842:1
position: 8842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8060-8842:1:exon

HIV01_RS00040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00040
old locus tag: HIV01_000040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005915451.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SPFH domain-containing protein
translation: MLAALLGITVHTVGCTVAQPDPGDVAVYQDRPYVFGHEGIRPEVLTEGRDVTWLSTNVIYVTTAPQTLHVPFQDLSSMDNILLDFDTSVQLRVIDAADTLKRFGPQWWANNVLSPYNSIVRRAVKSEKMAQMMSDPVAAEKVDQEVTDQLRALVKASGIRVEVMAVNLGKAKPNDNVLAQMNNTAAEQQRNLTLVAATIAEQQRKLEQEAKADADNAYRNKMGLSPELYLARQLAEIQAEACKAATACYLVPQGTNVVAK
SIO_010081: HIV01_RS00040
subclass of: SO_0000673
so part of: HIV01_RS00040
location: 8060..8842
location: region:8060-8842:1
so has part: feature:8060-8842:1:exon

WP_200606242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8060-8842:1:exon

HIV01_RS00045
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00045
old locus tag: HIV01_000045
so part of: sequence
location: complement(8901..9605)
location: region:8901-9605:-1
so has part: feature:8901-9605:-1:exon
subclass of: SO_0000010

position:8901:-1
position: 8901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9605:-1
position: 9605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8901-9605:-1:exon

HIV01_RS00045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00045
old locus tag: HIV01_000045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019185363.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LytTR family DNA-binding domain-containing protein
translation: MRILIVEDELLVRQRLLRLCTELAGTRARFDAVADLDSAGDRLQRSVYDGLLLDLNLAGEDGFDLLRSAVAGRYHCVVVSAHRERALQAFEHGVLDFVPKPFTRERLGLALDRLLDVGRYRSGGARYLGIWHAQGTALVELAEVLWIRADGDYSQLRMRNGRSELHDKSLASLTAVLPPDFVRCHRSYLVNLRHVRTLHAGSGSRYWLVLNDGAELPVGRAHVQALRGELALGA
SIO_010081: HIV01_RS00045
subclass of: SO_0000673
so part of: HIV01_RS00045
location: complement(8901..9605)
location: region:8901-9605:-1
so has part: feature:8901-9605:-1:exon

WP_200604261.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8901-9605:-1:exon

HIV01_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00050
old locus tag: HIV01_000050
so part of: sequence
location: complement(9593..11302)
location: region:9593-11302:-1
so has part: feature:9593-11302:-1:exon
subclass of: SO_0000010

position:9593:-1
position: 9593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11302:-1
position: 11302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9593-11302:-1:exon

HIV01_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00050
old locus tag: HIV01_000050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012509686.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sensor histidine kinase
translation: MQISRSLTALAVLLGAVSVWLVLASPPPGTSYAQALEMAPASMAVDGTLPGRPPDGLDWRPLDQRELAGWRDPYWLRWRLPAPVAHDAADRAMRLSLRAASQLFWNGQPLPGNGQVGRTADEEQPGRIDIVRVLPPSSPTGTDELVVLASSHHQWFRPRSADAFIAVGPVESIYGHGLGAWLIAALATGALGAACLYFLAVRRGRPRVPGARLLLGLGVIGLALPAVEAWRPLLGYTYPWHGPRLLALQLLHLAAAVLLPAYIARRFCVAVSTAARVAFLAALVAVLAFLPGFDNRGAALLLLSLLASAWLLLRARDEQEERWPILTLVLAGALALPIAGGAFLDGPYFLFLAVLMGFLLLRHAAQLRALDRHNALLREERARLSLQLLQRGIQPHWLMNTLTCLQELIEQAPMRASRLVESLAEQFEHLRESSTRQSVPLEDELALCRNHLDIVGLALDRNIGFEIDADHTGLCLPPGVLHAKVENALTHAGAVACAEQPFHLRVRREDDRWILDLRAARGCAPHRGQGTGTRYIEASLAAAYPRGWRFVQGADGAGWCSRMELTCAS
SIO_010081: HIV01_RS00050
subclass of: SO_0000673
so part of: HIV01_RS00050
location: complement(9593..11302)
location: region:9593-11302:-1
so has part: feature:9593-11302:-1:exon

WP_207527034.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9593-11302:-1:exon

HIV01_RS00055
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00055
old locus tag: HIV01_000055
so part of: sequence
location: 11301..12956
location: region:11301-12956:1
so has part: feature:11301-12956:1:exon
subclass of: SO_0000010

position:11301:1
position: 11301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12956:1
position: 12956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11301-12956:1:exon

HIV01_RS00055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00055
old locus tag: HIV01_000055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004134498.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha/beta fold hydrolase
translation: MRHRIGYAETLGPRVEMFGGRARLDHYAGAEAGGVLQTPFRLRRSVRSSFHPESAMSRVSMLLSCLRRPHVAALCLALSCATPALAEQAPLVFSPYAFETRGHGTIAAEAAFLDVPRRHAEPDGKRMRLRVVRLPATGGDGRTAPVIYLAGGPGGSGIGTARGPRWPVFDRVRREADVLLLDQRGAGLSEPPPPCPHEQHFDDAQPMQRDAALAALRATVAQCVAYWREAGIDLGAYTTVESAGDIEDLRRALGVPKVSLWGMSYGTHLALASMRLHGAGLDRVVLMGTEGPDDTLKLPLAADALLADLSVIAAGAGFEDLTGSAKRVLETLRQQPRQGRSVMHGGKLVTIGEFDAQLVMTASLGRRTTQQWLPAVLREAERGDYDPLADLVLLVRSEFAGFGAMPLAMDVASGQSPQRRALVEAQARKSLFGDALNFPFPQIADGLGLVDLGEAFRGPLRSDVPVLFISGTLDGRTPPANAEAIKPGITNSTSLLVRGASHDNEMWLGNAVIAGNIADFLAGRDVHDAVLELPPPEFAKSKADLPVALPR
SIO_010081: HIV01_RS00055
subclass of: SO_0000673
so part of: HIV01_RS00055
location: 11301..12956
location: region:11301-12956:1
so has part: feature:11301-12956:1:exon

WP_245156870.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11301-12956:1:exon

HIV01_RS00060
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00060
old locus tag: HIV01_000060
so part of: sequence
location: 12982..13293
location: region:12982-13293:1
so has part: feature:12982-13293:1:exon
subclass of: SO_0000010

position:12982:1
position: 12982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13293:1
position: 13293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12982-13293:1:exon

HIV01_RS00060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00060
old locus tag: HIV01_000060
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDYQLVIKFWRRSLEDETFLETIESELKQALGDTVVLDGYDVSKNEINLFMVTADPKQSFRRARDVLERMGLVKGVSSAYRLVGGARFTSVWPLRSTRKFTLP
SIO_010081: HIV01_RS00060
subclass of: SO_0000673
so part of: HIV01_RS00060
location: 12982..13293
location: region:12982-13293:1
so has part: feature:12982-13293:1:exon

WP_200604263.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12982-13293:1:exon

HIV01_RS00065
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: hemE
locus tag: HIV01_RS00065
old locus tag: HIV01_000065
so part of: sequence
location: complement(13358..14434)
location: region:13358-14434:-1
so has part: feature:13358-14434:-1:exon
subclass of: SO_0000010

position:13358:-1
position: 13358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14434:-1
position: 14434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13358-14434:-1:exon

HIV01_RS00065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: hemE
locus tag: HIV01_RS00065
old locus tag: HIV01_000065
EC number: 4.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014038142.1
GO function: GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]
GO process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: uroporphyrinogen decarboxylase
translation: MTAAPTPPKNDRFLRALRREPVDATPVWLMRQAGRYLPEYRATRAAAGSFLAMAKNPELACEVTLQPLRRFPLDAAILFSDILTVPDAMGLGLYFVEGEGPKFERPIRSHDDIARLAVPDMDRELRYVTDAVRTIRRELDNSVPLIGFSGSPWTLACYMVEGGGSDNYSKVKSLALNDPAAMHKLLDVVTDSVIAYLDAQRQAGAQALQVFDTWGGVLSPSMYREFSLRYLKRIAQELPRGDEKTPLILFGKGNGAYLEELAASGTEAVGVDWTVELGDAARRTGGKVALQGNLDPVTLYAQPDAIRREVGRALDDYAAGNGGSREGHVFNLGHGMSPDMSPDHVAALVAAVHELSAR
SIO_010081: HIV01_RS00065
subclass of: SO_0000673
so part of: HIV01_RS00065
location: complement(13358..14434)
location: region:13358-14434:-1
so has part: feature:13358-14434:-1:exon

WP_200604264.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13358-14434:-1:exon

HIV01_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00070
old locus tag: HIV01_000070
so part of: sequence
location: complement(14610..14864)
location: region:14610-14864:-1
so has part: feature:14610-14864:-1:exon
subclass of: SO_0000010

position:14610:-1
position: 14610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14864:-1
position: 14864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14610-14864:-1:exon

HIV01_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00070
old locus tag: HIV01_000070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011037968.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: WGR domain-containing protein
translation: MRLLLQQRPDGREAPRFVQLMLQPDLLGGWTLVRETGQIGGRSTLRREQFLDQASALEALEQARDQQLKRGFQLMFVQGADAPK
SIO_010081: HIV01_RS00070
subclass of: SO_0000673
so part of: HIV01_RS00070
location: complement(14610..14864)
location: region:14610-14864:-1
so has part: feature:14610-14864:-1:exon

WP_200604265.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14610-14864:-1:exon

HIV01_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: aroB
locus tag: HIV01_RS00075
old locus tag: HIV01_000075
so part of: sequence
location: complement(14916..16022)
location: region:14916-16022:-1
so has part: feature:14916-16022:-1:exon
subclass of: SO_0000010

position:14916:-1
position: 14916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16022:-1
position: 16022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14916-16022:-1:exon

HIV01_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: aroB
locus tag: HIV01_RS00075
old locus tag: HIV01_000075
EC number: 4.2.3.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013534453.1
GO function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA]
GO process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-dehydroquinate synthase
translation: MSTMRTVRVEGERLYDISIGPGLLADPVRISHVLRGRHALIVSDSNVAPLYADRVEQTLHAARAGMQVARFVMPAGEQEKTLSRFCQCLDALATLGATRDATVIALGGGVIGDLAGFAAACWMRGIDVIQMPTTLLAMVDSSVGGKTGVDLAAGKNLVGAFHAPRAVIADTTVLRTLPPRELCAGLAEVVKYGAVFGADFLGWLESHASALAAGDDFALTEAIARSCLYKAEVVSRDPYEHGERALLNFGHTFGHAIEAEQGYAGAGSQALNHGEAVAVGMVLAARLSSALGRASAADAQRLQVLLQRLGLPTALPAGLDPQALLARMRLDKKAEAGGLRFILWDHAGLASVVRGVPDELVLDVLRAA
SIO_010081: HIV01_RS00075
subclass of: SO_0000673
so part of: HIV01_RS00075
location: complement(14916..16022)
location: region:14916-16022:-1
so has part: feature:14916-16022:-1:exon

WP_200604266.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14916-16022:-1:exon

HIV01_RS00080
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00080
old locus tag: HIV01_000080
so part of: sequence
location: complement(16019..16603)
location: region:16019-16603:-1
so has part: feature:16019-16603:-1:exon
subclass of: SO_0000010

position:16019:-1
position: 16019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16603:-1
position: 16603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16019-16603:-1:exon

HIV01_RS00080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00080
old locus tag: HIV01_000080
EC number: 2.7.1.71
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003471681.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004765 - shikimate kinase activity [Evidence IEA]
GO process: GO:0008652 - amino acid biosynthetic process [Evidence IEA]; GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: shikimate kinase
translation: MNPASNLVLVGPMGAGKSCIGRILADRFGLRLVDVDREIEQRAGASINTIFECEGEVGFRARERSVLAELLADDGLVLSTGGGAVLDPDNRRLLRERGFVVHLHVSVECQIERLARDRSRPLLARGDREQVLHALAAEREPLYAQVADLRLDTNHHNATEVASRLAQELQSQWQRDVPAPVDSGLQRAHSKEPS
SIO_010081: HIV01_RS00080
subclass of: SO_0000673
so part of: HIV01_RS00080
location: complement(16019..16603)
location: region:16019-16603:-1
so has part: feature:16019-16603:-1:exon

WP_200604267.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16019-16603:-1:exon

HIV01_RS00085
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00085
old locus tag: HIV01_000085
so part of: sequence
location: 16709..16912
location: region:16709-16912:1
so has part: feature:16709-16912:1:exon
subclass of: SO_0000010

position:16709:1
position: 16709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16912:1
position: 16912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16709-16912:1:exon

HIV01_RS00085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00085
old locus tag: HIV01_000085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005410663.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dodecin family protein
translation: MSVVKVIELNAASKTSMEDAVKVGLKKCAESVKNIKGAWVNEIKVVTDDGGNVTEWRVNLRVSFVVQ
SIO_010081: HIV01_RS00085
subclass of: SO_0000673
so part of: HIV01_RS00085
location: 16709..16912
location: region:16709-16912:1
so has part: feature:16709-16912:1:exon

WP_200604268.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16709-16912:1:exon

HIV01_RS00090
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00090
old locus tag: HIV01_000090
so part of: sequence
location: complement(16927..17778)
location: region:16927-17778:-1
so has part: feature:16927-17778:-1:exon
subclass of: SO_0000010

position:16927:-1
position: 16927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17778:-1
position: 17778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16927-17778:-1:exon

HIV01_RS00090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00090
old locus tag: HIV01_000090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014161472.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: kinase
translation: MSPRLHPSDNVPAKTSPGFDTDLVEKVLHDALAHGSRIHAITGLQGSGKSTLAAQVATLARARGLRVAVLSIDDFYLGRRERQRLGRQVHPLLATRGPPGTHDLDLACATLDALRDGRRVQLPRFDKLADTRLPPSRWPSAHAADLTLFEGWFLKTPAQAAEELREPINAVERDEDPDGSWRRYCNEALARDYPRLWSRLDRLLFLQPPGFETVPQWRWQQEQSLQARTKAPAARSMSAADVQRFVQLFERVSRQALLRLPGIAEWTLPLDAQRRPVIGRGPA
SIO_010081: HIV01_RS00090
subclass of: SO_0000673
so part of: HIV01_RS00090
location: complement(16927..17778)
location: region:16927-17778:-1
so has part: feature:16927-17778:-1:exon

WP_200604269.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16927-17778:-1:exon

HIV01_RS00095
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: pdxH
locus tag: HIV01_RS00095
old locus tag: HIV01_000095
so part of: sequence
location: 17796..18398
location: region:17796-18398:1
so has part: feature:17796-18398:1:exon
subclass of: SO_0000010

position:17796:1
position: 17796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18398:1
position: 18398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17796-18398:1:exon

HIV01_RS00095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: pdxH
locus tag: HIV01_RS00095
old locus tag: HIV01_000095
EC number: 1.4.3.5
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020851786.1
GO function: GO:0010181 - FMN binding [Evidence IEA]; GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]
GO process: GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pyridoxamine 5'-phosphate oxidase
translation: MDTPALLNDALATFSQLFAEAGQAGEPDPTAMYLATAGLDARPSVRTVLLKAHDARGFVFYTHLDGRKGRELQANPHAALLFHWPRVREGVQVRIEGPVEIVNDDEADSYFALRPRGSQLGAWASKQSETLDSRETFEARLAEAEKRFDGRDVPRPPRWTGLRVRPSLIEFWYGANFRLHERQSYELDRAGEWHQRMLYP
SIO_010081: HIV01_RS00095
subclass of: SO_0000673
so part of: HIV01_RS00095
location: 17796..18398
location: region:17796-18398:1
so has part: feature:17796-18398:1:exon

WP_200604270.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17796-18398:1:exon

HIV01_RS00100
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00100
old locus tag: HIV01_000100
so part of: sequence
location: 18395..19213
location: region:18395-19213:1
so has part: feature:18395-19213:1:exon
subclass of: SO_0000010

position:18395:1
position: 18395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19213:1
position: 19213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18395-19213:1:exon

HIV01_RS00100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00100
old locus tag: HIV01_000100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017464044.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cobalamin-binding protein
translation: MRSGSVRAAGPQRIVCLTEEPTEILYALGEQDRIVGISGFTVRPSIARKEKPKVSAFTSAKIGEILKLEPDFVIGFSDIQAEIAGELIRRGVEVWISNHRSVEGIVDYVRRLGALVGVADRANAYADELQRGLDAIAAEAAKLPRRPKVYFEEWDEPPITGIRWVAELVRIAGGDDIFPERAAESLAKQRILEDAGEVVRRAPDIILGSWCGKKFRPEKVASRPGWDAIPAVRDGELHEIKSPIILQPGPAALTDGVREIAAIIKAWSLRAA
SIO_010081: HIV01_RS00100
subclass of: SO_0000673
so part of: HIV01_RS00100
location: 18395..19213
location: region:18395-19213:1
so has part: feature:18395-19213:1:exon

WP_200604271.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18395-19213:1:exon

HIV01_RS00105
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00105
old locus tag: HIV01_000105
so part of: sequence
location: complement(19283..19756)
location: region:19283-19756:-1
so has part: feature:19283-19756:-1:exon
subclass of: SO_0000010

position:19283:-1
position: 19283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19756:-1
position: 19756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19283-19756:-1:exon

HIV01_RS00105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00105
old locus tag: HIV01_000105
inference: COORDINATES: protein motif:HMM:NF025822.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4426 domain-containing protein
translation: MRIAPLTVLLAIGLTACSGGTPPAAAPAAPASQGEAVSRVGDVSVRANAMQTSALSPTVASQYGISRADNTVMLLVAVRQGPEAQEVALPARITATATDLRGRRQTIEMRELRSGDLLDYIGTAEATPPDTLRFDVTVVRENGATSTMQFTRDFYPR
SIO_010081: HIV01_RS00105
subclass of: SO_0000673
so part of: HIV01_RS00105
location: complement(19283..19756)
location: region:19283-19756:-1
so has part: feature:19283-19756:-1:exon

WP_200604272.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19283-19756:-1:exon

HIV01_RS00110
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: proC
locus tag: HIV01_RS00110
old locus tag: HIV01_000110
so part of: sequence
location: complement(19803..20648)
location: region:19803-20648:-1
so has part: feature:19803-20648:-1:exon
subclass of: SO_0000010

position:19803:-1
position: 19803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20648:-1
position: 20648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19803-20648:-1:exon

HIV01_RS00110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: proC
locus tag: HIV01_RS00110
old locus tag: HIV01_000110
EC number: 1.5.1.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014508437.1
GO function: GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO process: GO:0006561 - proline biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pyrroline-5-carboxylate reductase
translation: MSQTPSPSSPTGAIAFIGGGNMARSLIGGLISRGQSADGVHVAEPAQALRDALERDFHVRGFDNATAAATGADVWVLAVKPQVMASVCAELAGIAQAQRPLVISIAAGITADQLDGWLGGGLAVVRAMPNTPALLGVGITGLFANDSTDGHQRDHAAGLLDAVGPTVWIDDESRMDAVTAVSGSGPAYVFLLAEAMQAAGVAQGLAPEAARALVQQTLLGAATMLTRLDEPADVLRARVTSPGGTTQAAIETFEAGGFRELVARAIAAATERGRQLSAANH
SIO_010081: HIV01_RS00110
subclass of: SO_0000673
so part of: HIV01_RS00110
location: complement(19803..20648)
location: region:19803-20648:-1
so has part: feature:19803-20648:-1:exon

WP_200604273.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19803-20648:-1:exon

HIV01_RS00115
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00115
old locus tag: HIV01_000115
so part of: sequence
location: complement(20704..21360)
location: region:20704-21360:-1
so has part: feature:20704-21360:-1:exon
subclass of: SO_0000010

position:20704:-1
position: 20704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21360:-1
position: 21360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20704-21360:-1:exon

HIV01_RS00115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00115
old locus tag: HIV01_000115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009599962.1
GO function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YggS family pyridoxal phosphate-dependent enzyme
translation: MQLKLENAAAAAGRPVPRLLAVSKTQDATAVAELAAAGQRAFGENYVQETAAKQPALAGLGLEWHLIGHLQSNKAREAATLFDWVQTVDRIKLVTALAQHRAADRPPLNVLIQVNIDDEASKHGCEPGDVPALADAIAAQPRLRLRGLMVIPTPHPDPEQRRGAFRRTRELFDALRATHPQVDTLSMGMSDDHAIAIAEGATMVRIGTALFGARPRPA
SIO_010081: HIV01_RS00115
subclass of: SO_0000673
so part of: HIV01_RS00115
location: complement(20704..21360)
location: region:20704-21360:-1
so has part: feature:20704-21360:-1:exon

WP_200606245.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20704-21360:-1:exon

HIV01_RS00120
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00120
old locus tag: HIV01_000120
so part of: sequence
location: 21544..22581
location: region:21544-22581:1
so has part: feature:21544-22581:1:exon
subclass of: SO_0000010

position:21544:1
position: 21544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22581:1
position: 22581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21544-22581:1:exon

HIV01_RS00120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00120
old locus tag: HIV01_000120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019185385.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
GO process: GO:0043107 - type IV pilus-dependent motility [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV pilus twitching motility protein PilT
translation: MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDFEEFLEVDFSFEIPGLARFRVNAFNQNRGAGAVFRTIPSEVLSLDDLGCPPIFRELIDQPQGLILVTGPTGSGKSTTLAAMIDHINKNEYGHILSVEDPIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTVDRIIDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGIPAIRNLIREDKVAQMYSSIQTGQQYGMMTLDQHLQDLVKRGLILRPQAREYAKDKRLFE
SIO_010081: HIV01_RS00120
subclass of: SO_0000673
so part of: HIV01_RS00120
location: 21544..22581
location: region:21544-22581:1
so has part: feature:21544-22581:1:exon

WP_200604274.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21544-22581:1:exon

HIV01_RS00125
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00125
old locus tag: HIV01_000125
so part of: sequence
location: 22682..23827
location: region:22682-23827:1
so has part: feature:22682-23827:1:exon
subclass of: SO_0000010

position:22682:1
position: 22682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23827:1
position: 23827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22682-23827:1:exon

HIV01_RS00125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00125
old locus tag: HIV01_000125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017354960.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PilT/PilU family type 4a pilus ATPase
translation: MSSTTGGSIDFTSFLKLMAHQKASDLFITAGMPPSMKVHGKISPITQNPLTPQQSRDLVLNVMTPQQREEFEKTHECNFAIGVAGVGRFRVSCFYQRNQVGMVLRRIETKIPTVEELNLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNLNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWDAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAMDRIINFFPEDRRQQLLMDLSLNLKGVVAQQLIPTPDGKGRRVAMEILLGTPLVQDYIRDGEIHKIKEVMKESVQLGMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLRIKLAQGGDAKTLAAGMDGIEVAEIR
SIO_010081: HIV01_RS00125
subclass of: SO_0000673
so part of: HIV01_RS00125
location: 22682..23827
location: region:22682-23827:1
so has part: feature:22682-23827:1:exon

WP_158734026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22682-23827:1:exon

HIV01_RS00130
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00130
old locus tag: HIV01_000130
so part of: sequence
location: complement(24392..24958)
location: region:24392-24958:-1
so has part: feature:24392-24958:-1:exon
subclass of: SO_0000010

position:24392:-1
position: 24392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24958:-1
position: 24958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24392-24958:-1:exon

HIV01_RS00130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00130
old locus tag: HIV01_000130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010344128.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-3-methyladenine glycosylase I
translation: MSGYCDYAPGHPLHGPYHDREYGFPQRDDAVLYERLVLEINQAGLSWETMLRKREGFHSAYDGFDIDKVAAYGEADRARLLEDAGIIRNRLKVDAAIHNAQVIHGLRASHGSFAQWLDANMLVDGKRRDKADWVKLFKKTFRFTGGEITGEFLMSLGYLPGAHRDSCPVQARILKLKPPLDPPWRRKL
SIO_010081: HIV01_RS00130
subclass of: SO_0000673
so part of: HIV01_RS00130
location: complement(24392..24958)
location: region:24392-24958:-1
so has part: feature:24392-24958:-1:exon

WP_200604275.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24392-24958:-1:exon

HIV01_RS00135
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00135
old locus tag: HIV01_000135
so part of: sequence
location: complement(24962..26689)
location: region:24962-26689:-1
so has part: feature:24962-26689:-1:exon
subclass of: SO_0000010

position:24962:-1
position: 24962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26689:-1
position: 26689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24962-26689:-1:exon

HIV01_RS00135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00135
old locus tag: HIV01_000135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019464344.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Zn-dependent hydrolase
translation: MTAPIPAASLLHSRRFRALTVACLAALALSACKPQTPQEPAKPAAQATTAAASYATAHAGDYAVVPLKADLSGFDDAGKRMIAKLVQASEVMNDIYWKQSWDGERAALLARAPDAATRELVEVNFGPWDRLNEDTPIIDGVGARPPGGPFYPADMSKAEFEAAALPDKTSNYTLLRRDGGKLVTVPYHEAYKPDLERAAALLREAAALSADKSFANYLTMRAKALLDDDFRRSDMAWMDMKTNPVDIVIGPIETYEDQLFGYKAAYEGLVLVKDVEWSKKLARFASFLPALQKGLPVDDKYKAEVPGSAADLNAYQVVYYGGNANVGAKTIAINLPNDEEVQLAKGTRRLQLENVMKAKFDAILTPIAKELIAPDQLKHITFDAFFEDVMFHEVAHGLGIKKTLDGKGTVDEALKEYSSSFEEGKADILGLYMIDALSRKGELEESKLMDGYVTFLAGILRSVRFGASDAHGKANMVRFNFFAEQGAFSRDPDGRYRVDFEKMRAAMNALSAKLLKVQGDGDYAEAKRMTETLGMIKPELAADLGRLKDAKIPVDIRFEQGLGVLGLEQYAAGKP
SIO_010081: HIV01_RS00135
subclass of: SO_0000673
so part of: HIV01_RS00135
location: complement(24962..26689)
location: region:24962-26689:-1
so has part: feature:24962-26689:-1:exon

WP_200604276.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24962-26689:-1:exon

HIV01_RS00140
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00140
old locus tag: HIV01_000140
so part of: sequence
location: 26780..27346
location: region:26780-27346:1
so has part: feature:26780-27346:1:exon
subclass of: SO_0000010

position:26780:1
position: 26780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27346:1
position: 27346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26780-27346:1:exon

HIV01_RS00140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00140
old locus tag: HIV01_000140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002802054.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YqgE/AlgH family protein
translation: MSVTPTPLANQLLIALPALADSNFARSVALICQHDADGAMGLVVNRPSEYTLGEVFGQMGLEGGDPSLRSQIVLAGGPVHPERGFVLHDGGSQWDSTLAITERLFLTTSRDILEAMARGDGPDNAIVALGCAGWGSGQLEQELTENDWLTAPADAELLFELPLDARWQAAAGRIGVDFAYLADYSGHA
SIO_010081: HIV01_RS00140
subclass of: SO_0000673
so part of: HIV01_RS00140
location: 26780..27346
location: region:26780-27346:1
so has part: feature:26780-27346:1:exon

WP_200604277.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26780-27346:1:exon

HIV01_RS00145
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: ruvX
locus tag: HIV01_RS00145
old locus tag: HIV01_000145
so part of: sequence
location: 27346..27843
location: region:27346-27843:1
so has part: feature:27346-27843:1:exon
subclass of: SO_0000010

position:27843:1
position: 27843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27346-27843:1:exon

HIV01_RS00145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: ruvX
locus tag: HIV01_RS00145
old locus tag: HIV01_000145
EC number: 3.1.21.10
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011258226.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0003674 - molecular_function [Evidence IEA]
GO process: GO:0008150 - biological_process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Holliday junction resolvase RuvX
translation: MAGTADKASSIRRDGTVLGFDVGARRIGVAVASAFGHGARALAVIDVHGHGPDWAAIDRLRSEWRPDGLIVGDPMSLDGGDQPIRVRAHAFARELHTRYGLPVVLVDERMSSIEAAQRFASDRAEGRKRRRDAEALDAVAAAVIIERWLAAPDDALDLSELPHPT
SIO_010081: HIV01_RS00145
subclass of: SO_0000673
so part of: HIV01_RS00145
location: 27346..27843
location: region:27346-27843:1
so has part: feature:27346-27843:1:exon

WP_200604278.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27346-27843:1:exon

HIV01_RS00150
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00150
old locus tag: HIV01_000150
pseudo: true
so part of: sequence
location: 27887..28815
location: region:27887-28815:1
so has part: feature:27887-28815:1:exon
subclass of: SO_0000010

position:27887:1
position: 27887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28815:1
position: 28815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27887-28815:1:exon

HIV01_RS00150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00150
old locus tag: HIV01_000150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013535720.1
GO function: GO:0016597 - amino acid binding [Evidence IEA]; GO:0004070 - aspartate carbamoyltransferase activity [Evidence IEA]
GO process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO:0006520 - amino acid metabolic process [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: aspartate carbamoyltransferase catalytic subunit
SIO_010081: HIV01_RS00150
subclass of: SO_0000673
so part of: HIV01_RS00150
location: 27887..28815
location: region:27887-28815:1
so has part: feature:27887-28815:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:27887-28815:1:exon

HIV01_RS00155
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00155
old locus tag: HIV01_000155
so part of: sequence
location: complement(28846..29637)
location: region:28846-29637:-1
so has part: feature:28846-29637:-1:exon
subclass of: SO_0000010

position:28846:-1
position: 28846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29637:-1
position: 29637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28846-29637:-1:exon

HIV01_RS00155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00155
old locus tag: HIV01_000155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009591656.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phospholipase
translation: MSNVSRLLVLLLVALTTACVHRPAREASGRFVERELQVEGTTYRYQVFVPSAQAGGRHPPVILFLHGSGERGSDNRKQTEVGLGPHLRQHLADFPAIVVMPQSPEGRSWDGAIARMALAALDASVREFDGDKHRIVLTGLSRGGYGAYELALMEPLRFAALVPVCGGITQPPGVPERLQVEGVAQAPDPFAAAAQRLQHIPMWLFHGAKDEAVTPDQSRHMDEALRRVGADVRYSELPGVGHDVWDPAYAMPELWEWVWAQRR
SIO_010081: HIV01_RS00155
subclass of: SO_0000673
so part of: HIV01_RS00155
location: complement(28846..29637)
location: region:28846-29637:-1
so has part: feature:28846-29637:-1:exon

WP_200604280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28846-29637:-1:exon

HIV01_RS00160
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: mgtE
locus tag: HIV01_RS00160
old locus tag: HIV01_000160
so part of: sequence
location: complement(29691..31052)
location: region:29691-31052:-1
so has part: feature:29691-31052:-1:exon
subclass of: SO_0000010

position:29691:-1
position: 29691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31052:-1
position: 31052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29691-31052:-1:exon

HIV01_RS00160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: mgtE
locus tag: HIV01_RS00160
old locus tag: HIV01_000160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011037936.1
GO function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO process: GO:0015693 - magnesium ion transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: magnesium transporter
translation: MAEAVRHDKTARQLRLLSDALDSGRLGPVRRLVNTLSPAEIGNLLESLPPAKRTIVWGLVDAEDDGEVLVHVGDEVRESLLAEMDPDEIIAAASELEIDDLADLVEDLPDTVIDEVLKSMDRENRERLEQVLSYPEDTAGRLMNPDVVTVRTDTTVDVVLRYLRLRGELPEHTDHLYVVSRRHQYLGRLALAALLTHDPGTPINKLIDDEQAAIDVEESANEVARKFSDHDWLSAPVVDENNILLGRITIDDVVDIIRNQAEHQALSAAGLDEDEDLFSPVWRAMRRRLIWLSINLGTAFLAASVVGEFADTIDKLVALAVLMPIVAGMGGNAGTQVLALMVRGLALGQVGAANVRTLLWKEARVALLNGLVLGTLLALIVLLWFHSVGLSIVIGIALTLNLLFAAVAGVLVPVTLRRAGFDPALASGIFLTTVTDVMGFFTFLGLATLILLR
SIO_010081: HIV01_RS00160
subclass of: SO_0000673
so part of: HIV01_RS00160
location: complement(29691..31052)
location: region:29691-31052:-1
so has part: feature:29691-31052:-1:exon

WP_200604281.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29691-31052:-1:exon

HIV01_RS00165
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: ptsP
locus tag: HIV01_RS00165
old locus tag: HIV01_000165
so part of: sequence
location: complement(31182..32912)
location: region:31182-32912:-1
so has part: feature:31182-32912:-1:exon
subclass of: SO_0000010

position:31182:-1
position: 31182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32912:-1
position: 32912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31182-32912:-1:exon

HIV01_RS00165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: ptsP
locus tag: HIV01_RS00165
old locus tag: HIV01_000165
EC number: 2.7.3.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014159947.1
GO function: GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO process: GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphoenolpyruvate--protein phosphotransferase
translation: MRQEFNGHGASRGSALGRARVRLPHVLEVLEEHIPAKAVEAEVARLHAAIATVRNEMFALRERLHGALVHEVGEFLDLHSLLLDDPELLSGLDELIRTGRYSADYALRLQRDRIASVFQAMDDAYFRSRVDDIDQVIGRVHAALHRHDNGISGVAGEILVTDNVAPAELVQLQAQGVMAIVTTSGSILSHSAILARSLHLPYVVGAAQAMQKINDGDVLAVDGATGRVVLEPDANDLRGHRGRVRELARERKQLHRLRREPTRTIDGVDVKLFANAESRDDVAEAHALGAAGVGLYRTEFLFLQRNELPDEDEQFRVYRDVVLGMTGRTVTIRTLDLGADKADRTGLALRDEPNPALGLRGVRLSLARSGLLESQLRALVRASGYGPLRILLPMISSREEVRAVRSMLKRVTVQLREEGHEVAEQVPLGAMIEVPAAAIALPTFIGSVDFLSIGTNDLVQYLLAADRNNEALTNLYTPLHPAVIRLVRDVIRLGEKRGKPVAVCGEMAGDPHFAPMLLALGLTEFSLHPATLLELRRTIRHCNLAQLKASAPALLRARDRMAIEEWIHGNAPAHRS
SIO_010081: HIV01_RS00165
subclass of: SO_0000673
so part of: HIV01_RS00165
location: complement(31182..32912)
location: region:31182-32912:-1
so has part: feature:31182-32912:-1:exon

WP_200604282.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31182-32912:-1:exon

HIV01_RS00170
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00170
old locus tag: HIV01_000170
so part of: sequence
location: complement(32940..33209)
location: region:32940-33209:-1
so has part: feature:32940-33209:-1:exon
subclass of: SO_0000010

position:32940:-1
position: 32940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33209:-1
position: 33209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32940-33209:-1:exon

HIV01_RS00170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00170
old locus tag: HIV01_000170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019237443.1
GO process: GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HPr family phosphocarrier protein
translation: MIEHELTVTNRLGLHARATAKLVQALSGFRSSATLTAKGREVNAKSIMGVMLLAAGQGTQVKLRVEGEDEANAAQAVISLFERRFDEDS
SIO_010081: HIV01_RS00170
subclass of: SO_0000673
so part of: HIV01_RS00170
location: complement(32940..33209)
location: region:32940-33209:-1
so has part: feature:32940-33209:-1:exon

WP_200604283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32940-33209:-1:exon

HIV01_RS00175
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00175
old locus tag: HIV01_000175
so part of: sequence
location: complement(33325..33717)
location: region:33325-33717:-1
so has part: feature:33325-33717:-1:exon
subclass of: SO_0000010

position:33325:-1
position: 33325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33717:-1
position: 33717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33325-33717:-1:exon

HIV01_RS00175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00175
old locus tag: HIV01_000175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017154797.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PTS fructose IIA subunit family protein
translation: MAVGILLITHEGIGNALIAVAGRLMRPLPLRTEALEVPFDGDPDALLPLASAALRRVDGGEGVLVLTDLYGATPSNLAAKVARLGTPVRRVSALSLPMLLRVMNYADLTLDELPAVAAAGARNGVIVDEA
SIO_010081: HIV01_RS00175
subclass of: SO_0000673
so part of: HIV01_RS00175
location: complement(33325..33717)
location: region:33325-33717:-1
so has part: feature:33325-33717:-1:exon

WP_200604284.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33325-33717:-1:exon

HIV01_RS00180
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00180
old locus tag: HIV01_000180
so part of: sequence
location: complement(33928..34206)
location: region:33928-34206:-1
so has part: feature:33928-34206:-1:exon
subclass of: SO_0000010

position:33928:-1
position: 33928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34206:-1
position: 34206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33928-34206:-1:exon

HIV01_RS00180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00180
old locus tag: HIV01_000180
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRATQSHPILGALVLVLTSAALALGGCQKTETTTPVPVETPPPVEAPPPDTTTPPADTTTPPATTPESGAPTPPPVEGDQTPPKDDTTPPSK
SIO_010081: HIV01_RS00180
subclass of: SO_0000673
so part of: HIV01_RS00180
location: complement(33928..34206)
location: region:33928-34206:-1
so has part: feature:33928-34206:-1:exon

WP_200604285.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33928-34206:-1:exon

HIV01_RS00185
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00185
old locus tag: HIV01_000185
so part of: sequence
location: complement(34221..34505)
location: region:34221-34505:-1
so has part: feature:34221-34505:-1:exon
subclass of: SO_0000010

position:34221:-1
position: 34221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34505:-1
position: 34505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34221-34505:-1:exon

HIV01_RS00185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00185
old locus tag: HIV01_000185
inference: COORDINATES: protein motif:HMM:NF024600.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTSLVLFAALAAPPALAQRTEPPTTPPPPDKTMDSTPKMMSFRDMDVNADGKVSKDEAAVDARLTSQFAKADRDGDGQLSETEYAASQGGASQY
SIO_010081: HIV01_RS00185
subclass of: SO_0000673
so part of: HIV01_RS00185
location: complement(34221..34505)
location: region:34221-34505:-1
so has part: feature:34221-34505:-1:exon

WP_200604286.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34221-34505:-1:exon

HIV01_RS00190
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rapZ
locus tag: HIV01_RS00190
old locus tag: HIV01_000190
so part of: sequence
location: complement(34735..35616)
location: region:34735-35616:-1
so has part: feature:34735-35616:-1:exon
subclass of: SO_0000010

position:34735:-1
position: 34735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35616:-1
position: 35616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34735-35616:-1:exon

HIV01_RS00190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rapZ
locus tag: HIV01_RS00190
old locus tag: HIV01_000190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017915555.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNase adapter RapZ
translation: MSETPTSSLVIVSGMSGSGKSVALKTFEDLGYFCVDNLPADLLPQFVASVQRADDGAPAKLAVSIDVRNRHSDLSNIPDWLSAVGALGLDPKLVFFDASDATVLKRYADTRRRHPLSHLGLSLADAISLERQVLKPLRTIADAVVDTSDLNVHQLRRQVITEFGIGGDTGMSLLFESFAYRRGVPADADFVFDARALPNPHWDPVLRPLSGRDAAIRQYLEAQPDVNLFADQISQFLDTWLPRLHVDSTRSYATIAFGCTGGRHRSVYLAERLAAHAREKGWEEVAVHHRELD
SIO_010081: HIV01_RS00190
subclass of: SO_0000673
so part of: HIV01_RS00190
location: complement(34735..35616)
location: region:34735-35616:-1
so has part: feature:34735-35616:-1:exon

WP_200604287.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34735-35616:-1:exon

HIV01_RS00195
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: hprK
locus tag: HIV01_RS00195
old locus tag: HIV01_000195
so part of: sequence
location: complement(35649..36599)
location: region:35649-36599:-1
so has part: feature:35649-36599:-1:exon
subclass of: SO_0000010

position:35649:-1
position: 35649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36599:-1
position: 36599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35649-36599:-1:exon

HIV01_RS00195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: hprK
locus tag: HIV01_RS00195
old locus tag: HIV01_000195
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004425835.1
GO function: GO:0016791 - phosphatase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
GO process: GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HPr(Ser) kinase/phosphatase
translation: MSTSISAGELFEQQRDRLSLRWLAGEQGGRRVLEAVNTVARRPSLAGYLNAIYPNKVQILGTEELAWLDALDSRLRWETIEKIIQFRPLALVISKDQPCPEDLRIAAQESQTPLWISPRRGHELLNHLQYHLARTLAPRVTLHGVFMEIYSIGVLITGESGSGKSELALELVTRGHRLVADDAPEFTQIAPDVLDGTCPEMLQDLLEVRGLGVLNIRQMFGDTAVKNNKYLRLIVHLAKPMTEPKPMGMERLTGDSGVRRVLDLDVPMITLPVMPGRNLAVLTEAATRLHSLRMKGLDPAAAFIARHSNFLERGDS
SIO_010081: HIV01_RS00195
subclass of: SO_0000673
so part of: HIV01_RS00195
location: complement(35649..36599)
location: region:35649-36599:-1
so has part: feature:35649-36599:-1:exon

WP_200604288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35649-36599:-1:exon

HIV01_RS00200
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: raiA
locus tag: HIV01_RS00200
old locus tag: HIV01_000200
so part of: sequence
location: complement(36722..37048)
location: region:36722-37048:-1
so has part: feature:36722-37048:-1:exon
subclass of: SO_0000010

position:36722:-1
position: 36722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37048:-1
position: 37048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36722-37048:-1:exon

HIV01_RS00200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: raiA
locus tag: HIV01_RS00200
old locus tag: HIV01_000200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014159952.1
GO component: GO:0022626 - cytosolic ribosome [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA]
GO function: GO:0045182 - translation regulator activity [Evidence IEA]
GO process: GO:0009386 - translational attenuation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribosome-associated translation inhibitor RaiA
translation: MRIETYGQQIEVTPALRDYVESKLARLERHCEQAFDVRTQLSLDKPNHRAKATVNIAGRTLHADAAAIDMYAAIDLLSDKLDRLLKEHRSKVVDHHRGESAARSDSFG
SIO_010081: HIV01_RS00200
subclass of: SO_0000673
so part of: HIV01_RS00200
location: complement(36722..37048)
location: region:36722-37048:-1
so has part: feature:36722-37048:-1:exon

WP_158734200.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36722-37048:-1:exon

HIV01_RS00205
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00205
old locus tag: HIV01_000205
so part of: sequence
location: complement(37209..38627)
location: region:37209-38627:-1
so has part: feature:37209-38627:-1:exon
subclass of: SO_0000010

position:37209:-1
position: 37209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38627:-1
position: 38627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37209-38627:-1:exon

HIV01_RS00205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00205
old locus tag: HIV01_000205
EC number: 2.7.7.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010376907.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO process: GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA polymerase factor sigma-54
translation: MKPRLQAALGQQLVMTPQLRQAIRLLQLSAVELEAELAAAVESNPLLDWTEVAISVTNGNGASDSSSHEDTSEHLPPEAEWGSNDGEPWYERIGPADNDDDSPVAEQVAESDTLHDHLLWQLHLSPLSPRDRLIGVALIEAIDDDGYLREPLESIAASLAPAVEAGEEEITTVLHQVQQFDPVGVGARNLGECLRLQLAQFANETPGKALAHQLANGPLERLPKIGVAGLASEMRLDLGEVETAVHLLRSLDPRPGAQIGAIASDTYIAPDLVIWRQHGLWRVALADGMRPRIAIHRGYESMVRHASGTDASYLRGHLQEARWLLKSLEARGETLIKVARCLLKQQAAFLEFGDSALRPLTLREVAAEVGLHESTVSRAIARKYARTPRGTIPLRAFFASGIDTGAGGEASSTAIQSMIRRLIEAENPRKPLSDARLAETLKATGVPVARRTVAKYREAMSIPSSQDRVRIS
SIO_010081: HIV01_RS00205
subclass of: SO_0000673
so part of: HIV01_RS00205
location: complement(37209..38627)
location: region:37209-38627:-1
so has part: feature:37209-38627:-1:exon

WP_200604289.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37209-38627:-1:exon

HIV01_RS00210
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: lptB
locus tag: HIV01_RS00210
old locus tag: HIV01_000210
so part of: sequence
location: complement(38721..39440)
location: region:38721-39440:-1
so has part: feature:38721-39440:-1:exon
subclass of: SO_0000010

position:38721:-1
position: 38721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39440:-1
position: 39440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38721-39440:-1:exon

HIV01_RS00210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: lptB
locus tag: HIV01_RS00210
old locus tag: HIV01_000210
EC number: 7.5.2.5
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005913374.1
GO component: GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO function: GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
GO process: GO:0015920 - lipopolysaccharide transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LPS export ABC transporter ATP-binding protein
translation: MLVAQGLRKAYRSREVVKDFALTLDAGEVVGLLGPNGAGKTTCFYMIVGLVPADAGQIVLDGKDITSEPMYARAKYGVGYLPQEPSVFRKLSVADNIRLVLELREDLDKAGRERELGSLMDELQVTHVSDQIGASLSGGERRRVEIARALAAKPRLMLLDEPFAGVDPISVGEIQRIVRHLKNRGIGVLITDHNVRETLGICDRAYILNEGGVLAQGAPDALLANPDVRRVYLGETFRL
SIO_010081: HIV01_RS00210
subclass of: SO_0000673
so part of: HIV01_RS00210
location: complement(38721..39440)
location: region:38721-39440:-1
so has part: feature:38721-39440:-1:exon

WP_200604290.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38721-39440:-1:exon

HIV01_RS00215
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: lptA
locus tag: HIV01_RS00215
old locus tag: HIV01_000215
so part of: sequence
location: complement(39440..39955)
location: region:39440-39955:-1
so has part: feature:39440-39955:-1:exon
subclass of: SO_0000010

position:39955:-1
position: 39955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39440-39955:-1:exon

HIV01_RS00215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: lptA
locus tag: HIV01_RS00215
old locus tag: HIV01_000215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017356224.1
GO component: GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO function: GO:0001530 - lipopolysaccharide binding [Evidence IEA]
GO process: GO:0015920 - lipopolysaccharide transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lipopolysaccharide transport periplasmic protein LptA
translation: MTDLFASLSTLCLATVMALAPAAALARTSDRSKPMDIDAGSSDYSMDDSRPTTLSGGVIITQGTLDIRSNQAVIHSSGGDPVRAVLTGSPVKLKQELDDGKAMDAVASKVDYDLKSEIVVFTGGVNIRQPSGSIAGERVIYNMKTGQVQGGGEDAGRVKIRILPKNSQGGG
SIO_010081: HIV01_RS00215
subclass of: SO_0000673
so part of: HIV01_RS00215
location: complement(39440..39955)
location: region:39440-39955:-1
so has part: feature:39440-39955:-1:exon

WP_245156871.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39440-39955:-1:exon

HIV01_RS00220
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: lptC
locus tag: HIV01_RS00220
old locus tag: HIV01_000220
so part of: sequence
location: complement(39936..40508)
location: region:39936-40508:-1
so has part: feature:39936-40508:-1:exon
subclass of: SO_0000010

position:39936:-1
position: 39936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40508:-1
position: 40508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39936-40508:-1:exon

HIV01_RS00220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: lptC
locus tag: HIV01_RS00220
old locus tag: HIV01_000220
inference: COORDINATES: protein motif:HMM:TIGR04409.1
GO component: GO:0005886 - plasma membrane [Evidence IEA]
GO function: GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
GO process: GO:0015920 - lipopolysaccharide transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LPS export ABC transporter periplasmic protein LptC
translation: MTRRGVVIFLLLLVGAVLSTWALWSQRDRDSLAGGDANRPDYTLHDFELTVLDEQGAEAFTLIAPKMERDPKVKTLDIATPLFVIPPKAGSKATPWEVRSKTGWVSEKGEEVRLRGGVDAHSTNADGKPVKITTDHLNVFPDDKRATSTAKVTVTQPGFILNGQGLEADLDAKRIILNSDVKARYDRSVR
SIO_010081: HIV01_RS00220
subclass of: SO_0000673
so part of: HIV01_RS00220
location: complement(39936..40508)
location: region:39936-40508:-1
so has part: feature:39936-40508:-1:exon

WP_200604291.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39936-40508:-1:exon

HIV01_RS00225
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00225
old locus tag: HIV01_000225
so part of: sequence
location: complement(40505..41086)
location: region:40505-41086:-1
so has part: feature:40505-41086:-1:exon
subclass of: SO_0000010

position:40505:-1
position: 40505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41086:-1
position: 41086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40505-41086:-1:exon

HIV01_RS00225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00225
old locus tag: HIV01_000225
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014508473.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAD hydrolase family protein
translation: MTYSHLNDYPADIRERAARIRLACFDVDGTLTDGRLFFDSEGRELKAFHVHDGQGLVLLRKSGITVAFVTARASEVALRRAADLGITEAHTAVADKLACVRDIASRLGIAMDQVSFMGDDLPDLRVMLQTGLAVAPANAHPWVAGRVHWRTSLRAGHGAARELCDLLLAAQGHAETLLAQVSQVEGTRIEGNA
SIO_010081: HIV01_RS00225
subclass of: SO_0000673
so part of: HIV01_RS00225
location: complement(40505..41086)
location: region:40505-41086:-1
so has part: feature:40505-41086:-1:exon

WP_200604292.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40505-41086:-1:exon

HIV01_RS00230
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00230
old locus tag: HIV01_000230
so part of: sequence
location: complement(41123..42145)
location: region:41123-42145:-1
so has part: feature:41123-42145:-1:exon
subclass of: SO_0000010

position:41123:-1
position: 41123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42145:-1
position: 42145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41123-42145:-1:exon

HIV01_RS00230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00230
old locus tag: HIV01_000230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005408395.1
GO function: GO:0016853 - isomerase activity [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: KpsF/GutQ family sugar-phosphate isomerase
translation: MASVPTAQSHPVQPYADDPAQLAASGRRVFEIEAQALAAVAERIDGDFSAACKLILASSGRVVCTGMGKSGHIARKIAATLASTGTPAFYVHPGEAGHGDLGMITDVDVVLALSYSGESDEVLMLLPVLKRQGNKLISMTGRPNSSLAREADVHLDVSVPAEACPLALAPTSSTTASLALGDALAVALLDARGFTADDFARSHPAGALGRRLLLHISDIMHAGDDVPRISADASISEALIEMSRKRLGMTAVVDDDGRLLGLYTDGDLRRTLDDAGVDLRHTRIAEVMTRSPKTIGSDSLAVEAAQLMEAHKISGLLVVDEGRRVVGALNIHDLLRARVV
SIO_010081: HIV01_RS00230
subclass of: SO_0000673
so part of: HIV01_RS00230
location: complement(41123..42145)
location: region:41123-42145:-1
so has part: feature:41123-42145:-1:exon

WP_200604293.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41123-42145:-1:exon

HIV01_RS00235
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00235
old locus tag: HIV01_000235
so part of: sequence
location: 42292..42522
location: region:42292-42522:1
so has part: feature:42292-42522:1:exon
subclass of: SO_0000010

position:42292:1
position: 42292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42522:1
position: 42522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42292-42522:1:exon

HIV01_RS00235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00235
old locus tag: HIV01_000235
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012510288.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BolA/IbaG family iron-sulfur metabolism protein
translation: MNPETIRQLIEQGLPGSRADVRGDDGVHFEATVVAEAFRGKLPLARHRLVYATLGERMGGEIHALALKTITPEEAG
SIO_010081: HIV01_RS00235
subclass of: SO_0000673
so part of: HIV01_RS00235
location: 42292..42522
location: region:42292-42522:1
so has part: feature:42292-42522:1:exon

WP_158734206.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42292-42522:1:exon

HIV01_RS00240
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: murA
locus tag: HIV01_RS00240
old locus tag: HIV01_000240
so part of: sequence
location: 42596..43891
location: region:42596-43891:1
so has part: feature:42596-43891:1:exon
subclass of: SO_0000010

position:42596:1
position: 42596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43891:1
position: 43891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42596-43891:1:exon

HIV01_RS00240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: murA
locus tag: HIV01_RS00240
old locus tag: HIV01_000240
EC number: 2.5.1.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012437778.1
GO function: GO:0008760 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity [Evidence IEA]
GO process: GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
translation: MQKIVVEGGAALNGEVQISGAKNAVLPILCATLLADGPVSISNVPHLHDVVTTAKLLAELGAGITVDEGTISVNGKPGRGRGIVVDPTTVHSHVAPYELVKTMRASVLVLGPLLAKFGAAEVSLPGGCAIGSRPVDQHIKGLQALGAEITVENGYIKAHRNGRLKGARFVFDVVTVTGTENVLMAAVLAEGTSVLENAAMEPEIVDLADCLNALGANIEHAGSGRIVVHGVERLHGGSHDVLPDRIETGTFLVAAAMTGGRVTVRRARPDTLDAVIDKLKQAGAKIEIDGDRITLDMQGKRPRAVDLTTAPHPAFPTDMQAQFMAMNCIADGVGVINETIFENRFMHVSELQRLGADIRVEGHTAIIRGVERLTAAPVMATDLRASASLVLAGLVAEGATTIDRIYHLDRGYENLEEKFSGLGASVRRIAG
SIO_010081: HIV01_RS00240
subclass of: SO_0000673
so part of: HIV01_RS00240
location: 42596..43891
location: region:42596-43891:1
so has part: feature:42596-43891:1:exon

WP_200604294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42596-43891:1:exon

HIV01_RS00245
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00245
old locus tag: HIV01_000245
so part of: sequence
location: 43899..44213
location: region:43899-44213:1
so has part: feature:43899-44213:1:exon
subclass of: SO_0000010

position:43899:1
position: 43899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44213:1
position: 44213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43899-44213:1:exon

HIV01_RS00245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00245
old locus tag: HIV01_000245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014090693.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EF-hand domain-containing protein
translation: MILARGKFTTRRKALLGLVLVLLAVVAWLHFTGAAATRGLERKQMDWDNNGQVTMSEMLQSLYAVKVEITHEGARECRAYSWRGSTETLRVDCRTTMQPAAPKP
SIO_010081: HIV01_RS00245
subclass of: SO_0000673
so part of: HIV01_RS00245
location: 43899..44213
location: region:43899-44213:1
so has part: feature:43899-44213:1:exon

WP_245156872.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43899-44213:1:exon

HIV01_RS00250
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: ppk2
locus tag: HIV01_RS00250
old locus tag: HIV01_000250
so part of: sequence
location: complement(44251..45111)
location: region:44251-45111:-1
so has part: feature:44251-45111:-1:exon
subclass of: SO_0000010

position:44251:-1
position: 44251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45111:-1
position: 45111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44251-45111:-1:exon

HIV01_RS00250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: ppk2
locus tag: HIV01_RS00250
old locus tag: HIV01_000250
EC number: 2.7.4.1
inference: COORDINATES: protein motif:HMM:TIGR03707.1
GO component: GO:0005575 - cellular_component [Evidence IEA]
GO function: GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO process: GO:0006793 - phosphorus metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polyphosphate kinase 2
translation: MPDHRLPAEPGEDLPYPAAVTEQAPAVANIAELIGQAPSSRMSRRRYEREKRQLQIELLKLQAWVQETGQRVVILFEGRDAAGKGGAIKRFMEHLNPRGARVVALTKPSEAERTQWYFQRYVEHLPASGEIVLFDRSWYNRAGVERVMGFCNTNEYLEFMHQCPGFERMLVRSGIRLFKFWFSVGRAEQHRRFARRRKDPLKQWKLSPVDLASLDKWAEYTRAKEDMFATTDTAEAPWTVIRSDDKKRARLNAMRVVLSAFNYDLKDRVVVREPDPVIVGPASRAG
SIO_010081: HIV01_RS00250
subclass of: SO_0000673
so part of: HIV01_RS00250
location: complement(44251..45111)
location: region:44251-45111:-1
so has part: feature:44251-45111:-1:exon

WP_200604295.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44251-45111:-1:exon

HIV01_RS00255
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00255
old locus tag: HIV01_000255
so part of: sequence
location: 45296..46435
location: region:45296-46435:1
so has part: feature:45296-46435:1:exon
subclass of: SO_0000010

position:45296:1
position: 45296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46435:1
position: 46435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45296-46435:1:exon

HIV01_RS00255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00255
old locus tag: HIV01_000255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013535104.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SDR family oxidoreductase
translation: MTTTRRDLLKFGALAAASAALPQWAWAKQSKPVERAAKPLNILILGGTGFTGPFQVNYALARGHKVTLFNRGKRPSPEWPGEVEQLFGDRNTGDLKSLQGRKWDVCIDNPTSLPFWVRDAGNVLKGNVGHYLFISTISVYADGSKPGITEDAPLAVYEGKDAMAETQESLRADIEHLYGPLKALSEAEAHKQFGERVTIVRPGYIVGPRDETDRFTYWPHRVAQGGEMLVPGDGSDPVQIIDGRDLGEWMIRLAEAGTLGTFNAVGPAKPLSTTAMLKGCERVTGKKPTYTHVSPEFLEEQKVELPIWVPSKSGPYAGYGAVSNARAIGAGLTYRPFDTTVTDLLAWFRSQPAERQATLRAGITREQEATLLKAWRAKA
SIO_010081: HIV01_RS00255
subclass of: SO_0000673
so part of: HIV01_RS00255
location: 45296..46435
location: region:45296-46435:1
so has part: feature:45296-46435:1:exon

WP_200604296.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45296-46435:1:exon

HIV01_RS00260
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00260
old locus tag: HIV01_000260
so part of: sequence
location: complement(46527..47183)
location: region:46527-47183:-1
so has part: feature:46527-47183:-1:exon
subclass of: SO_0000010

position:46527:-1
position: 46527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47183:-1
position: 47183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46527-47183:-1:exon

HIV01_RS00260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00260
old locus tag: HIV01_000260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012437779.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3108 domain-containing protein
translation: MFAAALLMVASAPALAIKPFTADYQASYMGVVGTGRMTLAADGANRWKYSLAVTAPLADVRQTTVFEENGGQWRPLSGTDSTKVLGKGKTKNATYDWGRGVASWTGDVKPERAGPIKLQSGDLDALLINLAVVRDLAAGKPMSYRMVEDGRVKQLNYTVAGKEQITVDGKPVQATKVMASHGKKQTIAWIVDSMPVPARILQRDKGQDAIDLRVQSVR
SIO_010081: HIV01_RS00260
subclass of: SO_0000673
so part of: HIV01_RS00260
location: complement(46527..47183)
location: region:46527-47183:-1
so has part: feature:46527-47183:-1:exon

WP_200606251.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46527-47183:-1:exon

HIV01_RS00265
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00265
old locus tag: HIV01_000265
so part of: sequence
location: complement(47246..47953)
location: region:47246-47953:-1
so has part: feature:47246-47953:-1:exon
subclass of: SO_0000010

position:47246:-1
position: 47246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47953:-1
position: 47953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47246-47953:-1:exon

HIV01_RS00265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00265
old locus tag: HIV01_000265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017162572.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3108 domain-containing protein
translation: MPPAFAHLRCCCALAASAPALALESFVADYQVFNAGKALGEATMQVVPDAGRWRIDLNMRGTRGLMGLAGVNAQQSTVFDTVGDAYRPLSQSTVRKALFVGKQITGSYDWGNHSARWTGDVKKNRQAPVPLRDGDMSGLLINLAIIRDAQPGRTLDYRFVDNGRARDHRYAVANDLESVSVDGMSFNAMRVARVQGNEETVVWVVDGVPTPVRILQRENGEDTFDLRLVDYRGAQ
SIO_010081: HIV01_RS00265
subclass of: SO_0000673
so part of: HIV01_RS00265
location: complement(47246..47953)
location: region:47246-47953:-1
so has part: feature:47246-47953:-1:exon

WP_245156873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47246-47953:-1:exon

HIV01_RS00270
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: purN
locus tag: HIV01_RS00270
old locus tag: HIV01_000270
so part of: sequence
location: complement(48001..48681)
location: region:48001-48681:-1
so has part: feature:48001-48681:-1:exon
subclass of: SO_0000010

position:48001:-1
position: 48001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48681:-1
position: 48681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48001-48681:-1:exon

HIV01_RS00270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: purN
locus tag: HIV01_RS00270
old locus tag: HIV01_000270
EC number: 2.1.2.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008264548.1
GO function: GO:0004644 - phosphoribosylglycinamide formyltransferase activity [Evidence IEA]
GO process: GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphoribosylglycinamide formyltransferase
translation: MSARIAVLASGRGSNLQAILDAISVGELPAEIVGVFSDKPAAAVLQRVAPALRWSADARTFPSREAFDAALADAVAACRPDWVVCAGYMRILGDGFVSRFRGRLLNIHPSLLPRYPGLRTHARALADGQREHGASVHFVIPELDAGAVIAQAVVPVRADDDAEALATRVLAVEHPLLVAVLRLAAAGRLAEHGTTITLDGHALFTALRLDSAGVLHVSDDPASVAV
SIO_010081: HIV01_RS00270
subclass of: SO_0000673
so part of: HIV01_RS00270
location: complement(48001..48681)
location: region:48001-48681:-1
so has part: feature:48001-48681:-1:exon

WP_200604298.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48001-48681:-1:exon

HIV01_RS00275
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00275
old locus tag: HIV01_000275
so part of: sequence
location: complement(48681..49310)
location: region:48681-49310:-1
so has part: feature:48681-49310:-1:exon
subclass of: SO_0000010

position:49310:-1
position: 49310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48681-49310:-1:exon

HIV01_RS00275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00275
old locus tag: HIV01_000275
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003478165.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2238 domain-containing protein
translation: MQRDKQFALGLTLAVFLATWIAPHWPVEQALHSSLTVVGLFWLWRHDRRWPMRTFDFALVCAFIAVHCVAARWLYSNLPYDEWMRALTGWSPQQAFGWQRNHADRLIHLLFGVCLAPALREHVQQRWPRLSPRQAFAFALMLIMCASLVYEWLEWGIALTMSPEAAEAYNGQQGDLWDAHADMLLATLGALVAWPRRAETAYAASAEVA
SIO_010081: HIV01_RS00275
subclass of: SO_0000673
so part of: HIV01_RS00275
location: complement(48681..49310)
location: region:48681-49310:-1
so has part: feature:48681-49310:-1:exon

WP_200604299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48681-49310:-1:exon

HIV01_RS00280
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: purM
locus tag: HIV01_RS00280
old locus tag: HIV01_000280
so part of: sequence
location: complement(49350..50396)
location: region:49350-50396:-1
so has part: feature:49350-50396:-1:exon
subclass of: SO_0000010

position:49350:-1
position: 49350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50396:-1
position: 50396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49350-50396:-1:exon

HIV01_RS00280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: purM
locus tag: HIV01_RS00280
old locus tag: HIV01_000280
EC number: 6.3.3.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011098163.1
GO function: GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity [Evidence IEA]
GO process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphoribosylformylglycinamidine cyclo-ligase
translation: MSSTPPSPTTITYRDAGVDIDAGNEVVERIKPLVKRSFRPEVMGGLGGFGALFDLSGKYKEPVLVSGTDGVGTKLKLAQQLNRHDTIGIDLVGMCVNDVLVQGAEPLFFLDYFATGKLDVDTTVAVVGGIAKGCEMSGCALIGGETAEMPDMYPPGEYDLAGFCVAAVEKSKLLDGAKVRQGDVLLGIASSGPHSNGYSLVRRIYDRAGRPADLDLGGVKLIDALMAPTALYVKPILELLGKHDLHAMAHITGGGLTENIIRVIPDGLGLQIEASSIVLPPVFDWLQREGAVPNDDMWRTFNCGVGFVLVVAPGDVAAVSADLDRLGLSHRQIGEVVKAGDGERVHIG
SIO_010081: HIV01_RS00280
subclass of: SO_0000673
so part of: HIV01_RS00280
location: complement(49350..50396)
location: region:49350-50396:-1
so has part: feature:49350-50396:-1:exon

WP_245156874.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49350-50396:-1:exon

HIV01_RS00285
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00285
old locus tag: HIV01_000285
pseudo: true
so part of: sequence
location: 50581..>51609
location: region:50581-51609:1
so has part: feature:50581-51609:1:exon
subclass of: SO_0000010

position:50581:1
position: 50581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51609:1
position: 51609
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50581-51609:1:exon

HIV01_RS00285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00285
old locus tag: HIV01_000285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003471916.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF2066 domain-containing protein
SIO_010081: HIV01_RS00285
subclass of: SO_0000673
so part of: HIV01_RS00285
location: 50581..>51609
location: region:50581-51609:1
so has part: feature:50581-51609:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:50581-51609:1:exon

HIV01_RS00290
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00290
old locus tag: HIV01_000290
so part of: sequence
location: 51697..52842
location: region:51697-52842:1
so has part: feature:51697-52842:1:exon
subclass of: SO_0000010

position:51697:1
position: 51697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52842:1
position: 52842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51697-52842:1:exon

HIV01_RS00290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00290
old locus tag: HIV01_000290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017356238.1
GO function: GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO process: GO:1905887 - autoinducer AI-2 transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AI-2E family transporter
translation: MQTQSLDEIALFLRRLQWTALGLGACWLVWLLAPILSPFAFALILAWLGDPLVDRIERSGRSRNTAVALVFTMMALLVLAGLLILVPLLERQITTLVASLPKYRDWLMVTALPWVERRTGFEITDSLDFTHFAQLVRENWDQAGGVATTMLGYLSRSGSAVLAMVANIALLPVIAFFFLRDWDLLVDRVASLVPRNHLPTVARLARESSDVLGAFLRGQFLVMLVLGVMYGLGLWAVGLDLGILIGLIAGLLTFVPYLGPASGIILGVIAALVQYGDWQHVAGVLAVFGVGQVIESYVLTPKLVGDRIGLHPVAVIFAVLAGGQLFGFLGMLLALPVAAVVNVLLRYAQERYRHSKLYVGESAPDPLADPHLAPTLDDRQE
SIO_010081: HIV01_RS00290
subclass of: SO_0000673
so part of: HIV01_RS00290
location: 51697..52842
location: region:51697-52842:1
so has part: feature:51697-52842:1:exon

WP_200604302.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51697-52842:1:exon

HIV01_RS00295
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: hda
locus tag: HIV01_RS00295
old locus tag: HIV01_000295
so part of: sequence
location: 52902..53603
location: region:52902-53603:1
so has part: feature:52902-53603:1:exon
subclass of: SO_0000010

position:52902:1
position: 52902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53603:1
position: 53603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52902-53603:1:exon

HIV01_RS00295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: hda
locus tag: HIV01_RS00295
old locus tag: HIV01_000295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007970599.1
GO function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
GO process: GO:0032297 - negative regulation of DNA-templated DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DnaA regulatory inactivator Hda
translation: MSVPQLPLTLRYPPDQRLDTFVHAPAGTVEQLHALATGAAAVRTDNVYLAGPSGVGKTHLLLATCAATEAAGRRAAYLPLLAAAGRLRDALEALEGNDLIAIDGLEVIAGNRDDEVALFDAHNRARAAGVALVYAARDIPDAIGLGLPDLRSRLGQCTRITLAPLDDEGRREVLRQRAQRRGLVLEEAALDWLLKRVGRDLGGLTALLDRLDRASLAAQRRITVPFLRQTLGS
SIO_010081: HIV01_RS00295
subclass of: SO_0000673
so part of: HIV01_RS00295
location: 52902..53603
location: region:52902-53603:1
so has part: feature:52902-53603:1:exon

WP_200604303.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52902-53603:1:exon

HIV01_RS00300
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00300
old locus tag: HIV01_000300
so part of: sequence
location: complement(53608..54309)
location: region:53608-54309:-1
so has part: feature:53608-54309:-1:exon
subclass of: SO_0000010

position:53608:-1
position: 53608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54309:-1
position: 54309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53608-54309:-1:exon

HIV01_RS00300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00300
old locus tag: HIV01_000300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011348135.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nucleotidyltransferase family protein
translation: MKALIFAAGLGERMRPLTNHTPKPLLVAGGKPLIVWHLEKLAAMGVRDVVINTSWLADQFPQALGDGSRWGLRLHYSYEGTTPLETGGGMLHALPLLGDEPFLLVNGDIWTDYDFARLPREPAGLAHLVMVDRPGHATNGDFALDDSGHVRADGSNLLTYAGLGIYRPALLANWREAVAAEPGIAEEPPRFRLAPILKRAMPDGLISGEHHRDRWTDVGTPERLATLDAQLGG
SIO_010081: HIV01_RS00300
subclass of: SO_0000673
so part of: HIV01_RS00300
location: complement(53608..54309)
location: region:53608-54309:-1
so has part: feature:53608-54309:-1:exon

WP_200604304.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53608-54309:-1:exon

HIV01_RS00305
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00305
old locus tag: HIV01_000305
so part of: sequence
location: complement(54306..55328)
location: region:54306-55328:-1
so has part: feature:54306-55328:-1:exon
subclass of: SO_0000010

position:54306:-1
position: 54306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55328:-1
position: 55328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54306-55328:-1:exon

HIV01_RS00305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00305
old locus tag: HIV01_000305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009591863.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphotransferase
translation: MPVVPDSPNGAAPDRESERLAWARAASGDPDLVLQRASVDAGFRSYWRASTAAGTRIVMDSPPDLEDVRPWLRMRTLLEGGGVRVPKVLVEDVEAGFLLMEDLGGPTLAKVIDDDSADAHFAAAISQLLKLQAIAPPSGMGEFGEALLQRDAGLFEEWFLRRHLGIELDCGDAERLQLVQRQLMDNALSQARVLTHRDYMPRNLMPVPDGPAVLDFQDCVSGPVAYDAISLFKDAFLSWPLARVDEWLAQYHARALAAGVPVPPLAQFRRDADWLGIQRHLKILGIFARLHHRDGKSHYIDDAPRFIAYLDEVLPRYPELSPLRDLLDSRIRPAMAGVRA
SIO_010081: HIV01_RS00305
subclass of: SO_0000673
so part of: HIV01_RS00305
location: complement(54306..55328)
location: region:54306-55328:-1
so has part: feature:54306-55328:-1:exon

WP_200604305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54306-55328:-1:exon

HIV01_RS00310
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: cysK
locus tag: HIV01_RS00310
old locus tag: HIV01_000310
so part of: sequence
location: complement(55415..56395)
location: region:55415-56395:-1
so has part: feature:55415-56395:-1:exon
subclass of: SO_0000010

position:55415:-1
position: 55415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56395:-1
position: 56395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55415-56395:-1:exon

HIV01_RS00310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: cysK
locus tag: HIV01_RS00310
old locus tag: HIV01_000310
EC number: 2.5.1.47
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019397955.1
GO function: GO:0004124 - cysteine synthase activity [Evidence IEA]
GO process: GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cysteine synthase A
translation: MALYDSILDTIGSTPIVRLHRIAPAHVTLYAKVESFNPGGSVKDRLALAIVLDAERKGLLKPGQTIVEATSGNTGIALALVAAARGYPFVAVMTETFSVERRKLMRAYGAKVILTPAAERGSGMVRRAAELAQKHGWFLARQFENEANPAYHRSTTGPEILRDFAGKRLDYFVSGWGTGGTITGAGEVLKLARPDLKIIASEPAGAALLSGDTWQPHKIQGWTPDFLPQVLSRTIADEVLPVDDVLARDTARRLAAEEGVFVGISAGATVAAALKVAERAPEGSVLLAVLPDTGERYLSTFLFEGVAEGSDDEWLDELEGKEAVAA
SIO_010081: HIV01_RS00310
subclass of: SO_0000673
so part of: HIV01_RS00310
location: complement(55415..56395)
location: region:55415-56395:-1
so has part: feature:55415-56395:-1:exon

WP_200604306.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55415-56395:-1:exon

HIV01_RS00315
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: cysG
locus tag: HIV01_RS00315
old locus tag: HIV01_000315
so part of: sequence
location: complement(56440..57864)
location: region:56440-57864:-1
so has part: feature:56440-57864:-1:exon
subclass of: SO_0000010

position:56440:-1
position: 56440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57864:-1
position: 57864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56440-57864:-1:exon

HIV01_RS00315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: cysG
locus tag: HIV01_RS00315
old locus tag: HIV01_000315
EC number: 1.3.1.76
EC number: 2.1.1.107
EC number: 4.99.1.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014159539.1
GO function: GO:0051287 - NAD binding [Evidence IEA]; GO:0043115 - precorrin-2 dehydrogenase activity [Evidence IEA]; GO:0051266 - sirohydrochlorin ferrochelatase activity [Evidence IEA]; GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO process: GO:0019354 - siroheme biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: siroheme synthase CysG
translation: MASPLFPVFADLRGRDVLVVGGGTVAQRKAEALLEAGGRVRLGAPTLNDALARHVAEGRIEHLAGPFQAYWLDGAWLAIAATDDDAVNRAVAEAGNARRIWVNVVDDADASSVQIPARIERGPLQVAISSGGGAPMLARHLREKLESELDESVGELAELLGRERSRIRARFPQLGQRRRFFERLLAGPLPGLLRQRRKLAAEREFSAALSESNEPGSRGSVALVGAGPGDPGLLTLRALRVLNEADVILHDRLVSKEVLQLVRRDAQRIEVGKQAGNHHTTQQQIHALMLEHARAGKRVVRLKGGDPFVFGRGGEELEVLQADGIDFEVVPGITAALACAAYAGVPLTHREHAQSVRLVTAHCKESLDTLDWQSLALERQTLAVYMGVAGLDGLRDRLIAHGRASSTPFALVENGSRPEQRVVTGTLADLAERARHYEVQSPALLIIGEVAALAGKLHWFGQAPLGDTALALAA
SIO_010081: HIV01_RS00315
subclass of: SO_0000673
so part of: HIV01_RS00315
location: complement(56440..57864)
location: region:56440-57864:-1
so has part: feature:56440-57864:-1:exon

WP_200604307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56440-57864:-1:exon

HIV01_RS00320
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00320
old locus tag: HIV01_000320
so part of: sequence
location: 58053..59036
location: region:58053-59036:1
so has part: feature:58053-59036:1:exon
subclass of: SO_0000010

position:58053:1
position: 58053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59036:1
position: 59036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58053-59036:1:exon

HIV01_RS00320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00320
old locus tag: HIV01_000320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003477207.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysR family transcriptional regulator
translation: MTLTQLRYLVAIADSGLNITLAAERVHATQPGLSKQLKQLEDELGFQLFTRKGRSLEAIAPAGERVLMHARRILEEASNIRAYAANERGQHSGRLVLATTHTQARFVLPEVIASVKREFPQVSVHLQAAADGEVLEQLARGEADLAVISTAGSEPEGGVAVPLFRWRRVVLVPLTHPLAKLDRAPTLAELAAHPLISYESSTKPESSLHRTFAAAGLEPQLAMTARDADLIKTYVRAGLGVGVLAEMAVGVRDTDLKALPAPDALPECITWAVIPRARVLREYALALMHGIAPQLDRRDLRRVLEGNLEPSWPQAPAWRELSQPITT
SIO_010081: HIV01_RS00320
subclass of: SO_0000673
so part of: HIV01_RS00320
location: 58053..59036
location: region:58053-59036:1
so has part: feature:58053-59036:1:exon

WP_200604308.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58053-59036:1:exon

HIV01_RS00325
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00325
old locus tag: HIV01_000325
so part of: sequence
location: complement(59089..59829)
location: region:59089-59829:-1
so has part: feature:59089-59829:-1:exon
subclass of: SO_0000010

position:59089:-1
position: 59089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59829:-1
position: 59829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59089-59829:-1:exon

HIV01_RS00325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00325
old locus tag: HIV01_000325
EC number: 1.8.4.8
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018972881.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]; GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IEA]
GO process: GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphoadenylyl-sulfate reductase
translation: MSTPPDPITAAESPQALAELNHWLGQLSAPDRVAWALENTAGTHALSSSFGAQAAVSLHLATQQQPDMPVILIDTGYLFPETYRFVDQLSERLGLNLKVYRPQIGIAWMEARLGKLWEGGLDGIERYNRMRKVEPMQRALNELGVRTWIAGLRRSQARTRANIDFLELRDGRWKLHPIADWGDREVWQYLQQHDLPYHPLWHQGYVSIGDIHTTRPLEAGMNEEDTRFFGLKRECGLHFDSESNAA
SIO_010081: HIV01_RS00325
subclass of: SO_0000673
so part of: HIV01_RS00325
location: complement(59089..59829)
location: region:59089-59829:-1
so has part: feature:59089-59829:-1:exon

WP_200604309.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59089-59829:-1:exon

HIV01_RS00330
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: cysI
locus tag: HIV01_RS00330
old locus tag: HIV01_000330
so part of: sequence
location: complement(59826..61544)
location: region:59826-61544:-1
so has part: feature:59826-61544:-1:exon
subclass of: SO_0000010

position:59826:-1
position: 59826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:61544:-1
position: 61544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59826-61544:-1:exon

HIV01_RS00330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: cysI
locus tag: HIV01_RS00330
old locus tag: HIV01_000330
EC number: 1.8.1.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004089014.1
GO function: GO:0004783 - sulfite reductase (NADPH) activity [Evidence IEA]
GO process: GO:0000103 - sulfate assimilation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: assimilatory sulfite reductase (NADPH) hemoprotein subunit
translation: MSNHSVEDIKHESARLRGTLLASLANPVTGALADDDQTLIKYHGSYQQDDRDIREERRVAKLEPAYSFMIRTRTPGGVVTPAQWLKLDTVATRFAERGLRITTRQAFQFHGVIKTELKPTMQAISAALIDTLAACGDVNRNVAVAANPLLSQAHAAVHAQAAALSEHLLPNTRAYYEIWLDEERVAGSGSEDEPVYGPTYLPRKFKIGFAIPPYNDVDVFAQDLGFIAILDDDGALAGYNVSVGGGMGATHGDPETYPRLGDVIGFVSPDQVIAVGEAVVTAQRDFGNRNVRKRARLKYTIDDHGLDWFKAEVERRAGFSLLPARAFSFVHNGDRFGWIEGDEGLAHLTLRTVAGRIWDHEGILHLSGLREIARVLDEAANAAEFRLTPNQNLVIAGVPADLRTRIDALATQYGLDGYRTASPLQRNALACVALPTCGLAMAEAERYLPELTGKVQALLDGHGLHDAPIHLRISGCPNGCSRPYLGEIALVGKAPGRYNLMLGADHRGQRLNTLYRENIAEAQILAELDPLFARYAGERLTDEGFGDFLVRTAVIAPPRPPISLHLRSENAA
SIO_010081: HIV01_RS00330
subclass of: SO_0000673
so part of: HIV01_RS00330
location: complement(59826..61544)
location: region:59826-61544:-1
so has part: feature:59826-61544:-1:exon

WP_200604310.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59826-61544:-1:exon

HIV01_RS00335
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00335
old locus tag: HIV01_000335
so part of: sequence
location: complement(61557..63401)
location: region:61557-63401:-1
so has part: feature:61557-63401:-1:exon
subclass of: SO_0000010

position:61557:-1
position: 61557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:63401:-1
position: 63401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61557-63401:-1:exon

HIV01_RS00335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00335
old locus tag: HIV01_000335
EC number: 1.8.1.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018972883.1
GO component: GO:0009337 - sulfite reductase complex (NADPH) [Evidence IEA]
GO function: GO:0004783 - sulfite reductase (NADPH) activity [Evidence IEA]
GO process: GO:0006790 - sulfur compound metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: assimilatory sulfite reductase (NADPH) flavoprotein subunit
translation: MSASPSSPLASSSLGSPLPEDRLAALARVTDGLDASGLWWLSGYAAGLASRSAGTAAATAHPVAEAQAAGRLTIVYGSQTGNAKRLAEQLARQSEAAGLAVRLLRADAYPTRELKDERNLYLVISTQGDGDPPDDARALVEFIAGKRAPQLKQLRYAVLALGDSSYPQFCAIGQKLDERLAELGATRLLPRGDADLDIETIATPWLAQALAKAKEALKPTAPLATVTPLRPLPATPAHGRDAPFAAELLLNQRLVTRASSVGRPGPDKDVRHIELSLEGSGLHYEPGDAVGLWPSNPPALVDAVLATLQLDGNDQVSAGGQQLPLRTWLTDKRELTQLARPFVATLAAQARNDELNGLLAPGQQVQLSRLLAEQQVIDLLTQYRADWTGEELVAALRPLTPRLYSIASSQKQVGDEVHLTVAHVEYDNGHGTRWGAASHQLAASAEGARLPVFIEHNERFRLPADASRDVIMIGPGTGVAPFRGFLQERAAIDAPGRNWLLFGNPHFRTDFLYQVEWQQALKDGRLHRLDLAFSRDQERKVYVQHRLREHGRELFAWLEAGAHVYVCGDATRMARDVHAALLEAIAEHGGKSADDANDYLNDLQQQGRYARDVY
SIO_010081: HIV01_RS00335
subclass of: SO_0000673
so part of: HIV01_RS00335
location: complement(61557..63401)
location: region:61557-63401:-1
so has part: feature:61557-63401:-1:exon

WP_200604311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:61557-63401:-1:exon

HIV01_RS00340
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: cysD
locus tag: HIV01_RS00340
old locus tag: HIV01_000340
so part of: sequence
location: 63600..64514
location: region:63600-64514:1
so has part: feature:63600-64514:1:exon
subclass of: SO_0000010

position:63600:1
position: 63600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64514:1
position: 64514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63600-64514:1:exon

HIV01_RS00340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: cysD
locus tag: HIV01_RS00340
old locus tag: HIV01_000340
EC number: 2.7.7.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010370926.1
GO function: GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO process: GO:0019419 - sulfate reduction [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfate adenylyltransferase subunit CysD
translation: MTLPVDLSHLDRLEAESIHILREVAAEFRNPVLLYSIGKDSSVLLHLLLKAFAPARKPPIPLLHVDTGWKFREMIAFRDRRAGETGVELRVHTNPEGVAQGIGPISHGATVHTDVMKTQALKQALDLHGFDAAIGGARRDEEKSRAKERIFSFRNDQHRWDPKSQRPELWSLYNTRIHKGESVRVFPLSNWTELDIWLYIYRERIPVPSLYFAAQRPVVERDGAWILVDDERLPLREGESAQLRQVRFRTLGCYPLTGAIESQADTLEKIIAEMLVATTSERQGRVIDHDPTASMEKKKQEGYF
SIO_010081: HIV01_RS00340
subclass of: SO_0000673
so part of: HIV01_RS00340
location: 63600..64514
location: region:63600-64514:1
so has part: feature:63600-64514:1:exon

WP_200604312.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:63600-64514:1:exon

HIV01_RS00345
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: cysN
locus tag: HIV01_RS00345
old locus tag: HIV01_000345
so part of: sequence
location: 64514..66409
location: region:64514-66409:1
so has part: feature:64514-66409:1:exon
subclass of: SO_0000010

position:66409:1
position: 66409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64514-66409:1:exon

HIV01_RS00345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: cysN
locus tag: HIV01_RS00345
old locus tag: HIV01_000345
EC number: 2.7.7.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003477182.1
GO function: GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
GO process: GO:0006790 - sulfur compound metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfate adenylyltransferase subunit CysN
translation: MGAPTTTSETAASEVAAYLQRHETKGLLRFITCGSVDDGKSTLIGRLLFESRALFDDQLSALESDSRRHGTRNGEIDYALLLDGLSAEREQGITIDVAYRFFSTDKRKFIVADCPGHEQYTRNMATGASTADVAVVLVDARKGLLAQTRRHSYIASLLGIRHVLLAVNKMDLVGFDFAVFDEIVAGYRELAAQLGIAHVQAVPLSALQGDNLMQRSANTPWYDGPSVLEYLENVDATRGASGIGFRLPVQWVNRPDQDFRGFAGTVAAGSVKPGDDIVVLPSGRRSKVARIVTAGGDLDLAGEGQAVTLTLQDELDISRGDVIADAHKPPQVSDQFAAHMLWMGDQALLPGRPYWLKIGTRTVSASVTEIKHKIDVNTQEPLAAKHLELNEVGYCNLYLDQPVPFEAYADSRTLGGFILIDRQSNATVAAGTLEFALRRAGNIHWQHLDVDKTARARIKGQKPRVLWFTGLSGSGKSTIANLVDKRLHGLGYHTFILDGDNVRHGLNKDLGFTDEDRVENIRRVAEVAKLMADAGLIVLVSFISPFRAERRMARELFAPGEFVEVFIDTPLAVAEERDVKGLYAKARAGQLRNFTGIDSPYEIPEAAELQLDTVSDPAEHLAQRVIDFLLD
SIO_010081: HIV01_RS00345
subclass of: SO_0000673
so part of: HIV01_RS00345
location: 64514..66409
location: region:64514-66409:1
so has part: feature:64514-66409:1:exon

WP_200604313.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:64514-66409:1:exon

HIV01_RS00350
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00350
old locus tag: HIV01_000350
so part of: sequence
location: complement(66473..66721)
location: region:66473-66721:-1
so has part: feature:66473-66721:-1:exon
subclass of: SO_0000010

position:66473:-1
position: 66473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66721:-1
position: 66721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66473-66721:-1:exon

HIV01_RS00350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00350
old locus tag: HIV01_000350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018973988.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GlsB/YeaQ/YmgE family stress response membrane protein
translation: MGSIVYTIIIGAVIGILARFFKPGADPMGWILTILLGIAGAYIGSLLYAGGGFIGFLISIICAVVLLFVYEFIRSKTAKPTA
SIO_010081: HIV01_RS00350
subclass of: SO_0000673
so part of: HIV01_RS00350
location: complement(66473..66721)
location: region:66473-66721:-1
so has part: feature:66473-66721:-1:exon

WP_200604314.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:66473-66721:-1:exon

HIV01_RS00355
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00355
old locus tag: HIV01_000355
so part of: sequence
location: complement(66853..68343)
location: region:66853-68343:-1
so has part: feature:66853-68343:-1:exon
subclass of: SO_0000010

position:66853:-1
position: 66853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68343:-1
position: 68343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66853-68343:-1:exon

HIV01_RS00355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00355
old locus tag: HIV01_000355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003478178.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M20 family metallopeptidase
translation: MDTSKVDRFVADKWDDEIVPQLVEYIRIPNKSPMFDADWVKHGYMEDAVTLMERWAKAQPIPGMKVEVVRLEGRTPLIFIEVPASNGGSNDDCVLLYGHLDKQPEMTGWDPEFGPWSPVIKGDRLYGRGGADDGYAIFGSLTAVLALQEQQLPHSRCVILIEACEESGSYDLPAYVDHLAGRIGKPSLVVCLDSGCGNYDQLWCTTSLRGLAGGNFTVKVLSEGVHSGDASGIVPSSFRLLRQLLSRLEDENTGKIRIEDLFVEVPAERMAQAREAAKVLDTAIFDKFPLLPGMKPMADDLTELVLNRTWRPALSVTGVDGMPPLASAGNVLRPHTSVKLSLRLPPTLDGKRAGELLKEVLLSNPPNGAQVTLDLEKSSSGWNAPAQSPWLTKAIDASSRDFFGQPAMYMGEGGSIPFMGMLGEKFPGAQFMITGVLGPHSNAHGPNEFLHIPMGKRVTACVSRVIAEHHLASQRGETTGVAAVAGGQERGDHGCC
SIO_010081: HIV01_RS00355
subclass of: SO_0000673
so part of: HIV01_RS00355
location: complement(66853..68343)
location: region:66853-68343:-1
so has part: feature:66853-68343:-1:exon

WP_200604315.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:66853-68343:-1:exon

HIV01_RS00360
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00360
old locus tag: HIV01_000360
so part of: sequence
location: 68652..69029
location: region:68652-69029:1
so has part: feature:68652-69029:1:exon
subclass of: SO_0000010

position:68652:1
position: 68652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69029:1
position: 69029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68652-69029:1:exon

HIV01_RS00360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00360
old locus tag: HIV01_000360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005919170.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-hairpin-helix domain-containing protein
translation: MKSTGWRGVPLLLTLLLAAAVNAAEKVNINTADAATIDRVMVNIGPGKAEAIVAYRKANGPFRSAEQLALVKGVGLKTVEKNLDRIVFTGGAAPAKVAATKPAATGKPATRPVAKPAAPARAASR
SIO_010081: HIV01_RS00360
subclass of: SO_0000673
so part of: HIV01_RS00360
location: 68652..69029
location: region:68652-69029:1
so has part: feature:68652-69029:1:exon

WP_200604316.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:68652-69029:1:exon

HIV01_RS00365
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00365
old locus tag: HIV01_000365
so part of: sequence
location: 69226..69831
location: region:69226-69831:1
so has part: feature:69226-69831:1:exon
subclass of: SO_0000010

position:69226:1
position: 69226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69831:1
position: 69831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69226-69831:1:exon

HIV01_RS00365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00365
old locus tag: HIV01_000365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010344080.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HutD family protein
translation: MAPERSSRSWVIPANEYRRERWRNQMGWTREILAHVPVAGAPWDWRLSIAEIESDAPFSAFPGIDRELVLLAGNGLRLRFDDGEVKELLPPHDRMRFAGERGVTGELVDGLTHDFNLMWRRDRVRANLWHRPLVGPMVLFADPESTWIVHLIAGQARFADDSGLPPLAAQDTAIIAAGSQRVRHVLDGGGEVLLIRIEPLP
SIO_010081: HIV01_RS00365
subclass of: SO_0000673
so part of: HIV01_RS00365
location: 69226..69831
location: region:69226-69831:1
so has part: feature:69226-69831:1:exon

WP_200604317.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:69226-69831:1:exon

HIV01_RS00370
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00370
old locus tag: HIV01_000370
so part of: sequence
location: complement(69842..71479)
location: region:69842-71479:-1
so has part: feature:69842-71479:-1:exon
subclass of: SO_0000010

position:69842:-1
position: 69842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:71479:-1
position: 71479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69842-71479:-1:exon

HIV01_RS00370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00370
old locus tag: HIV01_000370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019398135.1
GO function: GO:0010181 - FMN binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: flavodoxin domain-containing protein
translation: MSAVVSNRRAWLGNALVLAGLLVLALAFGRWQTDAWWLASPRLGSWLLAALVVLAYLGLCAAIVSSARTQARSASTGDGDSGADAVLLAWASQTGFAQQLAEHTVEALRAAGMAVRALPLHRVDADVLRSHRRALFIASTTGEGDPPDHVLGFTRHVLDQSITLEGLEYAVLALGDRAYDQFCGFGRRLDQWLHHHGAKPLFDRIDVDAGDAGALRHWQHRLGQLSGRADFADWSAPAYQSWRLAERRWLNEGSVGGPAYHVALVPQDAAHLDWTAGDIAEIGPRHPDDAVADWLANCRLDGNVAVKSGDSVEPLSTVLARSRLPSPHDVLGQGAQTVADSLQPLPHREYSIASLPGDGSLQLLVRQMRHPDGRLGSGSGWLTAHAEPGARIDVRIRRNTSFHPPADDRPVVLIGNGTGLAGLRALLKSRIAAGHHRNWLLFGERQAGHDFHYRDEIEGWLLEGRLQELDLAFSRDDPSRRTYVQHLLRERIEELRTWIAQGASVYVCGSLEGMAPDVDAVLREAVGLDVLETMAASGRYCRDVY
SIO_010081: HIV01_RS00370
subclass of: SO_0000673
so part of: HIV01_RS00370
location: complement(69842..71479)
location: region:69842-71479:-1
so has part: feature:69842-71479:-1:exon

WP_200604318.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:69842-71479:-1:exon

HIV01_RS00375
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00375
old locus tag: HIV01_000375
so part of: sequence
location: complement(71476..72444)
location: region:71476-72444:-1
so has part: feature:71476-72444:-1:exon
subclass of: SO_0000010

position:71476:-1
position: 71476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:72444:-1
position: 72444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71476-72444:-1:exon

HIV01_RS00375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00375
old locus tag: HIV01_000375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005993274.1
GO component: GO:0005886 - plasma membrane [Evidence IEA]
GO function: GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO process: GO:0017013 - protein flavinylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD:protein FMN transferase
translation: MQAAGNDRGAVDILGGATMGTTWSVKLVARPHTDLHALHSRIQARLDDVIAQMSNWTAHSDLSRFNAAAAGSWHPLRDDFWTVLTCALDIARASDGAYDPTVGAIADAWGFGPSGRRDMPQDVPADVLDSVGWQRLVVDAQTRRVLQPGGTQLDLCAIAKGFAVDAVAAQLQSDGIDSALVEVGGELYGRGRKPDGTPWRVIVEACSGDEDDDNQARVIDLDGLAVATSGDRWHRVERDGQRYSHTIDPRSGRPALGAPAAVTVAAASAMLADGWATALTVMGAEDGHAFACRHDLAARFVVSASGGQDERMTPAFAELLQA
SIO_010081: HIV01_RS00375
subclass of: SO_0000673
so part of: HIV01_RS00375
location: complement(71476..72444)
location: region:71476-72444:-1
so has part: feature:71476-72444:-1:exon

WP_200604319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:71476-72444:-1:exon

HIV01_RS00380
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00380
old locus tag: HIV01_000380
so part of: sequence
location: complement(72476..73285)
location: region:72476-73285:-1
so has part: feature:72476-73285:-1:exon
subclass of: SO_0000010

position:72476:-1
position: 72476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73285:-1
position: 73285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72476-73285:-1:exon

HIV01_RS00380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00380
old locus tag: HIV01_000380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019237449.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4198 domain-containing protein
translation: MKQTLKFAALALALSLPLAAQAHKAWLQPSQTVLAGNNPWVTVDAAVSNDLFYFNHVPLKTDNLAITAPDGSQVAAQNSATGKYRTVFDVELKQTGTYKIGVLNDYVVGQWDEDGKPKRWRGTAAAFATEVPKGAKNLQVSQSISRVETFVTNGSPNDTALKPSGKGLELVPVTHPNDLFAGDEAKFRMQVDGKPAAGIDVEIVRGNTRYRNAQDEIKVKTDAKGEFTVTWPEAGMYWLEATSEDKKTTVPQAKQRRIGYVATLEVLPQ
SIO_010081: HIV01_RS00380
subclass of: SO_0000673
so part of: HIV01_RS00380
location: complement(72476..73285)
location: region:72476-73285:-1
so has part: feature:72476-73285:-1:exon

WP_200604320.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:72476-73285:-1:exon

HIV01_RS00385
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00385
old locus tag: HIV01_000385
so part of: sequence
location: complement(73343..73852)
location: region:73343-73852:-1
so has part: feature:73343-73852:-1:exon
subclass of: SO_0000010

position:73343:-1
position: 73343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73852:-1
position: 73852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73343-73852:-1:exon

HIV01_RS00385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00385
old locus tag: HIV01_000385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017163219.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2271 domain-containing protein
translation: MRVQLTIALSGLLALPAYSAEINLNLQIPQLNVAEYHRPYVAIWVEGPDQKAAANLAVWYQQKATNEGAGTKWLPDLRQWWRRSGRTLKVPVDGVTGPTRPVGKHALQFTDRHPELASLPAGDYTLVVEAAREVGGRELLKIPFKWRGASDGSAQGSSELGLVTLASKP
SIO_010081: HIV01_RS00385
subclass of: SO_0000673
so part of: HIV01_RS00385
location: complement(73343..73852)
location: region:73343-73852:-1
so has part: feature:73343-73852:-1:exon

WP_200604321.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73343-73852:-1:exon

HIV01_RS00390
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00390
old locus tag: HIV01_000390
so part of: sequence
location: complement(73886..74530)
location: region:73886-74530:-1
so has part: feature:73886-74530:-1:exon
subclass of: SO_0000010

position:73886:-1
position: 73886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:74530:-1
position: 74530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73886-74530:-1:exon

HIV01_RS00390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00390
old locus tag: HIV01_000390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012437791.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PepSY-associated TM helix domain-containing protein
translation: MSASSAAPDIAARQQRRGFWLRTLHQWHWISSAVCLVAMLLFSVTGITLNHSSVIEAKPQTLNRTVDMPASMLKALGKREEGSAPLPGSVSDWLNDVLPVAIGEQPAEWSEQEVYLSLPRPGGDAWLSIDRATGAVEYERTSRGWIAYLNDLHKGRNAGAAWRWFIDIFAIACLVFCITGLFLLQMHARQRPSTWPYVVLGLVVPLLLALLFIH
SIO_010081: HIV01_RS00390
subclass of: SO_0000673
so part of: HIV01_RS00390
location: complement(73886..74530)
location: region:73886-74530:-1
so has part: feature:73886-74530:-1:exon

WP_200604322.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73886-74530:-1:exon

HIV01_RS00395
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00395
old locus tag: HIV01_000395
so part of: sequence
location: complement(74535..75221)
location: region:74535-75221:-1
so has part: feature:74535-75221:-1:exon
subclass of: SO_0000010

position:74535:-1
position: 74535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:75221:-1
position: 75221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74535-75221:-1:exon

HIV01_RS00395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00395
old locus tag: HIV01_000395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010344076.1
GO function: GO:0016706 - 2-oxoglutarate-dependent dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0031418 - L-ascorbic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fe2+-dependent dioxygenase
translation: MLLQVPQVLTADQVAHCRARLAQAGWADGRITAGYQSAQAKDNTQLPENDPVARELGALVLEALARNSTFFSAALPQRIYPPLFNRYSGGQSFGFHVDNAVRYDRSSGGAEPVRTDLSATLFLSAPEDYDGGELIIEDTYGVQQVKLRAGDMVLYPGTSLHRVTPVTRGERIASFFWIQSLLREDAQRRLMFDLDVSIRRLTQDVPDHPALVQLTGVYHNLLRRWAET
SIO_010081: HIV01_RS00395
subclass of: SO_0000673
so part of: HIV01_RS00395
location: complement(74535..75221)
location: region:74535-75221:-1
so has part: feature:74535-75221:-1:exon

WP_200604323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:74535-75221:-1:exon

HIV01_RS00400
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00400
old locus tag: HIV01_000400
so part of: sequence
location: complement(75317..77671)
location: region:75317-77671:-1
so has part: feature:75317-77671:-1:exon
subclass of: SO_0000010

position:75317:-1
position: 75317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77671:-1
position: 77671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75317-77671:-1:exon

HIV01_RS00400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00400
old locus tag: HIV01_000400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011051935.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TonB-dependent receptor
translation: MYNRKFAVSPLAGAVAMAITALVVSSPVLADPAGEPQAKDLDKIEVHGQYVDKPSSVKYTEPLLDTPQTITVVTKDVMDQQNLIGLRDVLSTLPGITFGAGEGGGGYGDSIILRGFNANSDITTDNVRDSAQYTRTDSFNLDAIELINGSNSVYSGAGSVGGNINLVSKAARAGDFTVLQAGAGTDSYGRVTLDSNTDFDNGTAFRVNAMVHQNDAPGRDVETFERWGIAPSLAFGLGSDTRFTVSYFHQSDDNVPQYGVPYFSAFGGPLPGVDPSNYYGYRNIDKQEIDVDMLTGVFEHDFSDRMTLRSLARFQQVDQLSVVDAPQGTWCLEGGINAATGLACPRPLTPNTYQPSGPRGHSRDTRNGIAISQTDLTSRFATGSVQHSLVAGISFSHESFDLDTVNLLRTPDGTPVTPPIMSLTNPDSLWTGPINPFLVGRTEGTQDNQAIYVFDTLEFNEQWMLNLGARYEHNEGDSAIWNIKTYTAPTAANPRPDNTNIGAVLGRAPVAANEDDLFSYRAGLVYKPRENGTIYVSYSNSKTPSKASVNGSCTLTSTTGTANCNVDPETAVNYEIGTKWDIGSRLALTASVFRNDREEFKVADPGNPLNPSGEQQLDGEARVDGVTLGVAGQITHDWSIFANVTWLDSEVLQGVSDNCIANPSTACGNTAANPDPLEGRPISGTPERSGSLWTTYDLSQWTFGYGITYQSGYEYYTGVGANAGDIKGYTTHRAMVGYDINERLSLQLNANNLFDKEYYTRVRNNGWSTPGDTRSVVLSAAYRF
SIO_010081: HIV01_RS00400
subclass of: SO_0000673
so part of: HIV01_RS00400
location: complement(75317..77671)
location: region:75317-77671:-1
so has part: feature:75317-77671:-1:exon

WP_200604324.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:75317-77671:-1:exon

HIV01_RS00405
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00405
old locus tag: HIV01_000405
so part of: sequence
location: complement(77896..78219)
location: region:77896-78219:-1
so has part: feature:77896-78219:-1:exon
subclass of: SO_0000010

position:77896:-1
position: 77896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78219:-1
position: 78219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77896-78219:-1:exon

HIV01_RS00405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00405
old locus tag: HIV01_000405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017909656.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: non-heme iron oxygenase ferredoxin subunit
translation: MSDWVFVCATSQLLPGESTVAWDGDTPILVLNYDGDYYALEDKCSHEDFELSAGTFDGEEATIECVLHGAKFDVRDGRPLCAPAYEPVLKFPVKVEDGGIWTRDDRG
SIO_010081: HIV01_RS00405
subclass of: SO_0000673
so part of: HIV01_RS00405
location: complement(77896..78219)
location: region:77896-78219:-1
so has part: feature:77896-78219:-1:exon

WP_200604325.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:77896-78219:-1:exon

HIV01_RS00410
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00410
old locus tag: HIV01_000410
so part of: sequence
location: complement(78223..78792)
location: region:78223-78792:-1
so has part: feature:78223-78792:-1:exon
subclass of: SO_0000010

position:78223:-1
position: 78223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78792:-1
position: 78792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78223-78792:-1:exon

HIV01_RS00410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00410
old locus tag: HIV01_000410
EC number: 2.3.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013534775.1
GO function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MTALQASAAAAPAIVFRHATHADIDALVALVESAYRGDASKQGWTTEADLLGGRRTGADDIQACIDRPRSVILIAERDAADGRRELLACAHVAVEHGAGYFGMFSVNPTLQGGGIGKVVINEAERLVREDWGMAAMRMTVIDVREELIAFYERRGYHRTGIKKPFPYGDARFGEPKRDDLRFEILEKAL
SIO_010081: HIV01_RS00410
subclass of: SO_0000673
so part of: HIV01_RS00410
location: complement(78223..78792)
location: region:78223-78792:-1
so has part: feature:78223-78792:-1:exon

WP_200604326.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:78223-78792:-1:exon

HIV01_RS00415
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00415
old locus tag: HIV01_000415
so part of: sequence
location: complement(78789..80024)
location: region:78789-80024:-1
so has part: feature:78789-80024:-1:exon
subclass of: SO_0000010

position:78789:-1
position: 78789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80024:-1
position: 80024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78789-80024:-1:exon

HIV01_RS00415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00415
old locus tag: HIV01_000415
EC number: 2.8.1.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011037897.1
GO function: GO:0031071 - cysteine desulfurase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO process: GO:0006534 - cysteine metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cysteine desulfurase
translation: MNASLDSTIDWARVRADFPLLTRQVHGKPLIYFDSANTGQKPETVIAAVDDFYRHHNANVSRAVHALGTEATDAYEGARNKLAKFFNVRGDELVLCSGTTFALNLVAYSWALPRLQPGDAIVLTRMEHHANIVPWQLVAQRTGATIKVAELNERGELDLERLYALLTPEVKLLSLAHVSNVLGTVNPVREICREARKRGIVTVVDGSQAAPHRVLDIAAVGCDFYAITGHKMSGPTGTGALWARREHLAAMPPFIGGGEMIKEVRFEGTVFNDPPHKFEAGTPNIAGFIGLGAAVDYLSSLGMHNVEAREQALLAHATEELSKVEGLRIFGEAKEKAAVISFLVEGAHAHDLATLLDLEGVAIRSGHHCAHPLMHHFGVAATCRASLAFYNTHDEVEAFVAALRKVRKLLA
SIO_010081: HIV01_RS00415
subclass of: SO_0000673
so part of: HIV01_RS00415
location: complement(78789..80024)
location: region:78789-80024:-1
so has part: feature:78789-80024:-1:exon

WP_200604327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:78789-80024:-1:exon

HIV01_RS00420
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: sufD
locus tag: HIV01_RS00420
old locus tag: HIV01_000420
so part of: sequence
location: complement(80021..81316)
location: region:80021-81316:-1
so has part: feature:80021-81316:-1:exon
subclass of: SO_0000010

position:80021:-1
position: 80021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81316:-1
position: 81316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80021-81316:-1:exon

HIV01_RS00420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: sufD
locus tag: HIV01_RS00420
old locus tag: HIV01_000420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019397567.1
GO function: GO:0005198 - structural molecule activity [Evidence IEA]
GO process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fe-S cluster assembly protein SufD
translation: MSALLDSFATAFDSLAARDAAGLGESRKAALDAAMRDGIPHARVEAWKYTPLRSLERRSFVASDTTVAAYDVALLDGIPAPRIVFVNGRLDTAHSDIAGLGAGITLQPLSQVLREGEPRDANFLARRFDRADEIFARLNSALADDGIVLRAEAGAHAAVPLHLVFIGAASNGDRAWHLRSLIELREGATLTVVEHQLGAGAHSHLANAVTHVHLGPNATLNHARVQDEGATATLISRTDAVMAKSAEYRRLDLELGAGLSRHELNVALHGDGAKLHANGVLLATGKRHLDTRLGIDHVGRDSSCDLTWRGLGAGRAKAAFHGGILIREGADGTAANLSNKNLLLSEGAEIDTQPVLEIHADEVQAAHGATVGQLDATALFYMRSRGVPAEQARALLTAAFCRETLAVFEDRVLRETLTARLDAALATLETA
SIO_010081: HIV01_RS00420
subclass of: SO_0000673
so part of: HIV01_RS00420
location: complement(80021..81316)
location: region:80021-81316:-1
so has part: feature:80021-81316:-1:exon

WP_200604328.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:80021-81316:-1:exon

HIV01_RS00425
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: sufC
locus tag: HIV01_RS00425
old locus tag: HIV01_000425
so part of: sequence
location: complement(81318..82082)
location: region:81318-82082:-1
so has part: feature:81318-82082:-1:exon
subclass of: SO_0000010

position:81318:-1
position: 81318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82082:-1
position: 82082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81318-82082:-1:exon

HIV01_RS00425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: sufC
locus tag: HIV01_RS00425
old locus tag: HIV01_000425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010483553.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
GO process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fe-S cluster assembly ATPase SufC
translation: MLKIENLHVSVAGKEILKGLSLDVQAGQVHAIMGPNGAGKSTLGNILAGREGYEVTAGTVSFDGRDLLELEPEERAAAGVFLAFQYPVEIPGVNNTYFLRTALNAQRKARGEAELDSMQFLKLVRQKLAVLHLKDELLHRGVNEGFSGGEKKRNEIFQLALLEPRLAILDETDSGLDIDALKAVADGVNALRDAGRAFLVITHYQRLLDYIKPDVVHVLADGRVVETGGPELALQLEEHGYAWVKDRIAPQAAV
SIO_010081: HIV01_RS00425
subclass of: SO_0000673
so part of: HIV01_RS00425
location: complement(81318..82082)
location: region:81318-82082:-1
so has part: feature:81318-82082:-1:exon

WP_200604329.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81318-82082:-1:exon

HIV01_RS00430
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: sufB
locus tag: HIV01_RS00430
old locus tag: HIV01_000430
so part of: sequence
location: complement(82139..83602)
location: region:82139-83602:-1
so has part: feature:82139-83602:-1:exon
subclass of: SO_0000010

position:82139:-1
position: 82139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83602:-1
position: 83602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82139-83602:-1:exon

HIV01_RS00430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: sufB
locus tag: HIV01_RS00430
old locus tag: HIV01_000430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019397565.1
GO process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fe-S cluster assembly protein SufB
translation: MATEVIDTTSSQNREIHEQLGRKYEAGFVTDIESDSLPPGLNEDIIRALSAKKDEPEWMTEWRLAAYRHFLTMPMPHWAKLNIAPIDLQALSYYSAPKAKYASLDEVPQELLDTYEKLGVPLHERAKLAGVAVDAVFDSVSVGTTFRKELAEKGVIFCSLSEAIHDHPELVKQYLGSVVPTGDNYFAALNSAVFSDGSFVFIPKGVRCPMELSTYFRINAMNTGQFERTLIIAEEGSYVSYLEGCTAPMRDENQLHAAVVELVALDDAEIKYSTVQNWYPGDENGVGGIYNFVTKRGECRGARSKISWTQVETGSAITWKYPSCVLLGDDSTGEFYSVALTHHRQQADTGTKMIHVGKRTKSKIISKGISAGRGQNTYRGLVKVLGGAEGARNHTQCDSLLIGKKCGAHTFPYIEVRHPTATVEHEATTSKISDDQLFYCRSRGIGAEDAVSMIVDGFCKSVFRELPMEFAVEAKKLLEVSLEGSVG
SIO_010081: HIV01_RS00430
subclass of: SO_0000673
so part of: HIV01_RS00430
location: complement(82139..83602)
location: region:82139-83602:-1
so has part: feature:82139-83602:-1:exon

WP_200604330.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:82139-83602:-1:exon

HIV01_RS00435
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00435
old locus tag: HIV01_000435
so part of: sequence
location: complement(83647..84102)
location: region:83647-84102:-1
so has part: feature:83647-84102:-1:exon
subclass of: SO_0000010

position:83647:-1
position: 83647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84102:-1
position: 84102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83647-84102:-1:exon

HIV01_RS00435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00435
old locus tag: HIV01_000435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013534780.1
GO process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SUF system Fe-S cluster assembly regulator
translation: MLRVTKLTDYATVVMTVLAHRSDAVLSASELAERAGLEATTVSKVLKPLAQAGLVEGFRGANGGYRLARRAEDIGLLEIVIAMEGPLGMTECSVHAGNCGIEQSCGVRANWRRINDVVIDALRGVTLAQMLAPPPPPESTAKRIDLRLANA
SIO_010081: HIV01_RS00435
subclass of: SO_0000673
so part of: HIV01_RS00435
location: complement(83647..84102)
location: region:83647-84102:-1
so has part: feature:83647-84102:-1:exon

WP_200604331.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:83647-84102:-1:exon

HIV01_RS00440
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00440
old locus tag: HIV01_000440
so part of: sequence
location: complement(84235..84777)
location: region:84235-84777:-1
so has part: feature:84235-84777:-1:exon
subclass of: SO_0000010

position:84235:-1
position: 84235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84777:-1
position: 84777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84235-84777:-1:exon

HIV01_RS00440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00440
old locus tag: HIV01_000440
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: cytochrome C
translation: MIRSALAVTALLSLAACQQGEHARHASTDHKAPAQKDLLARGEYLARTAGCNDCHTPGYAESQGAVDKAQWLVGSPVGFRGPWGTTYPTNLRLKLSTMTETQWLDYSAKLRTRPLMPDFALRDMTLEDRRAIYQFVRSLGPAGQPAPAFIPPGQNPQPPYFDLVLPAAPPVAASATASGS
SIO_010081: HIV01_RS00440
subclass of: SO_0000673
so part of: HIV01_RS00440
location: complement(84235..84777)
location: region:84235-84777:-1
so has part: feature:84235-84777:-1:exon

WP_200604332.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84235-84777:-1:exon

HIV01_RS00445
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00445
old locus tag: HIV01_000445
pseudo: true
so part of: sequence
location: 84911..>85372
location: region:84911-85372:1
so has part: feature:84911-85372:1:exon
subclass of: SO_0000010

position:84911:1
position: 84911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85372:1
position: 85372
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84911-85372:1:exon

HIV01_RS00445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00445
old locus tag: HIV01_000445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019237451.1
GO function: GO:0005515 - protein binding [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: SET domain-containing protein-lysine N-methyltransferase
SIO_010081: HIV01_RS00445
subclass of: SO_0000673
so part of: HIV01_RS00445
location: 84911..>85372
location: region:84911-85372:1
so has part: feature:84911-85372:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:84911-85372:1:exon

HIV01_RS00450
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00450
old locus tag: HIV01_000450
so part of: sequence
location: 85551..86348
location: region:85551-86348:1
so has part: feature:85551-86348:1:exon
subclass of: SO_0000010

position:85551:1
position: 85551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86348:1
position: 86348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85551-86348:1:exon

HIV01_RS00450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00450
old locus tag: HIV01_000450
EC number: 1.1.1.30
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018972226.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-hydroxybutyrate dehydrogenase
translation: MSLEGKVAIVTGAASGIGKEIAFELARAGAAIAIADLNADGAQAVAAEIAGKGGRALGLAMDVTDEAAVNAGVARVVAELGGVDILVSNAGIQIVNPIEQFAYADWKKMLAIHLDGAFLTTKAVLPHMYGAGADGKSRGGTVIYMGSVHSHLASPLKSAYVTAKHGLLGLSRTLAKEGAKHSVRSHVVCPGFVRTPLVDKQIPEQAKELGISEAEVVSRVMLGNTVDGIFTTVEDVAQTVRFLAEFPSAALTGQSFVVSHGWHMQ
SIO_010081: HIV01_RS00450
subclass of: SO_0000673
so part of: HIV01_RS00450
location: 85551..86348
location: region:85551-86348:1
so has part: feature:85551-86348:1:exon

WP_200604333.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:85551-86348:1:exon

HIV01_RS00455
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00455
old locus tag: HIV01_000455
so part of: sequence
location: 86620..88845
location: region:86620-88845:1
so has part: feature:86620-88845:1:exon
subclass of: SO_0000010

position:86620:1
position: 86620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88845:1
position: 88845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86620-88845:1:exon

HIV01_RS00455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00455
old locus tag: HIV01_000455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015446748.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5916 domain-containing protein
translation: MTLAILAALAFPVMSTPAMGVEIDGRIDPAEWQGAREITDFRKVQPLSREPATLQTKVWVMATPEGLAVAFRNNQPVETRTRQKVQRDFEAQVDRVNLMIDYDGDGRTGYNFTVSSTDGIADAVISNETQFNDDWDGNWQHAVSEDDTGWNVEMLIPWYIAPMRNGSDGMRTVKVYFDRVIGSTGERSAWPAASFERPRFLSDFEPMQMAQYSQSLLAVTPYASGLYDNVGGDSDFDGGADIFWKPNGQFQLSATINPDFGQVESDDLVVNFSATETFISDKRPFFTENQGIFEFTTPSDFSQLLYTRRVGGPADDGNGAGDITAAVKLNGSVGATKYGVFAADEADEVGRTFGALRVVRDFASQNLGVMLTQVDRPFLDREASVMGVDHNWRPNQHVSVETRVIGSQIDQDGRTSDDTGATMWVNYEMEDGWRQQWLAMHFGEELQINDFGYLSRANLNYLNWQVMRRFTDQPAESRYASKDWRGRISGTDNDHGQRLQRQLRISRQGNLRNGSFEYAQININSAFVDDLLTRGNGNVNLPPNFNAYLEYERPRKGNWSWELEADAFSGGLAGNDRIGFDIRLQPTYFFNDAFSVYLGAYYEQIPSWLVWQNDNLIGEFDEKMMQISAGMDWNIGSKQELRVKLQALGLDAPLRQAYRVDGGGNSIASADAVDDFNVQNLGFQIRYRYELAPLSYLYVVYGRGGYQQEPFSEDTGELVRDSLELRDDEQLLVKLSYRFEI
SIO_010081: HIV01_RS00455
subclass of: SO_0000673
so part of: HIV01_RS00455
location: 86620..88845
location: region:86620-88845:1
so has part: feature:86620-88845:1:exon

WP_245156875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:86620-88845:1:exon

HIV01_RS00460
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00460
old locus tag: HIV01_000460
so part of: sequence
location: complement(88887..89318)
location: region:88887-89318:-1
so has part: feature:88887-89318:-1:exon
subclass of: SO_0000010

position:88887:-1
position: 88887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:89318:-1
position: 89318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:88887-89318:-1:exon

HIV01_RS00460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00460
old locus tag: HIV01_000460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017460510.1
GO function: GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative toxin-antitoxin system toxin component, PIN family
translation: MDSVRPRVVLDTNVCLDLFVFGDPRVATLRAALQSGDVVAVTDMGCREEWLRVLEYPQLRLDQAARVAAIAAFDAQVQLLPTAAVPEGVLPRCADPDDQKFLHLAHACGARWLLSRDDALLVLARRTRRDGLFEILLPDAWTL
SIO_010081: HIV01_RS00460
subclass of: SO_0000673
so part of: HIV01_RS00460
location: complement(88887..89318)
location: region:88887-89318:-1
so has part: feature:88887-89318:-1:exon

WP_200604334.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:88887-89318:-1:exon

HIV01_RS00465
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00465
old locus tag: HIV01_000465
so part of: sequence
location: complement(89339..90022)
location: region:89339-90022:-1
so has part: feature:89339-90022:-1:exon
subclass of: SO_0000010

position:89339:-1
position: 89339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:90022:-1
position: 90022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:89339-90022:-1:exon

HIV01_RS00465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00465
old locus tag: HIV01_000465
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTFRNLIACLAVVASLAACSDDKPQGQRGGDSAEALPAPSGKAAGSVTGMPDQPGPGQIGPPPQAIEEVVLDDQGNPIVPTDETGQPIPGTDVAPDGAATSEPTAQDAMAVVRDYYAAINGRDFDRAYALWSDSGRASGQTSQQFADGFKDTSGVSVEILAPGAVDAAAGSRFIEVPVAMTATAADGSQRKFVGAYTLRRAVVDGATAEQRAWRIGSADIREVTTP
SIO_010081: HIV01_RS00465
subclass of: SO_0000673
so part of: HIV01_RS00465
location: complement(89339..90022)
location: region:89339-90022:-1
so has part: feature:89339-90022:-1:exon

WP_200604335.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:89339-90022:-1:exon

HIV01_RS00470
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00470
old locus tag: HIV01_000470
so part of: sequence
location: complement(90024..90614)
location: region:90024-90614:-1
so has part: feature:90024-90614:-1:exon
subclass of: SO_0000010

position:90024:-1
position: 90024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:90614:-1
position: 90614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90024-90614:-1:exon

HIV01_RS00470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00470
old locus tag: HIV01_000470
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: DUF1439 domain-containing protein
translation: MSSRSSLNDSRNVWRGLAVAALALVLAACSTLNGLGALLGNEVRFTPMQLQASLDRNFPKHYDKLGGLVSLTLLNPRLTIPQGSNRLRVDFDLGLGALGSDSSRPAGHFALTSALRYDPGTRGLHLQDPRIEQVDVPTLGGAMTGSSRALLNSWLGEYSREEPIYRFDNSLLDKLGSRRIGTTAIESGTVVVHLDQ
SIO_010081: HIV01_RS00470
subclass of: SO_0000673
so part of: HIV01_RS00470
location: complement(90024..90614)
location: region:90024-90614:-1
so has part: feature:90024-90614:-1:exon

WP_200604336.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:90024-90614:-1:exon

HIV01_RS00475
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00475
old locus tag: HIV01_000475
so part of: sequence
location: complement(90690..91979)
location: region:90690-91979:-1
so has part: feature:90690-91979:-1:exon
subclass of: SO_0000010

position:90690:-1
position: 90690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:91979:-1
position: 91979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90690-91979:-1:exon

HIV01_RS00475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00475
old locus tag: HIV01_000475
inference: COORDINATES: protein motif:HMM:NF021541.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2272 domain-containing protein
translation: MRHGPGVVLHAVLVILMLAPAAPAWAQAGNSRSIPNFARPPGFPDPAFRVEYARGSDAPPMMVRTGPNSFEPLYRRDGNGYTPARAAGYHIAMSSCPSIPDRGGSATTRMIDLATAEWAYFGLPVLDMAVEPQAIVPRMPQAAGVVDIIAPGRNASIGNRVLRQAPRLGLMEDDSPVQGTIAGYWAATGNEEALRVQSIVNYGWHEAGWAMPWSAAFISWLACEAGLSTEQFRRSGAHYEYVRAAVRARDGEDPSHIYVAYDLTEAVPAAGDLLCTSRGNATFTSIADVRRGISDSLSLHCDLVVKTDLERRRLFAIGGNVNHAVTLSVIAIDGKGQPLTDRDIIGAHRWFAVLKPRQGSAPKHDLDGTPTVQQLYRDYARYSSSTRAPPPLPLVARGKPASSTTPPAVTPPPKAPSKPPPVKEPPKTP
SIO_010081: HIV01_RS00475
subclass of: SO_0000673
so part of: HIV01_RS00475
location: complement(90690..91979)
location: region:90690-91979:-1
so has part: feature:90690-91979:-1:exon

WP_200604337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:90690-91979:-1:exon

HIV01_RS00480
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: fusA
locus tag: HIV01_RS00480
old locus tag: HIV01_000480
so part of: sequence
location: complement(92079..94136)
location: region:92079-94136:-1
so has part: feature:92079-94136:-1:exon
subclass of: SO_0000010

position:92079:-1
position: 92079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:94136:-1
position: 94136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92079-94136:-1:exon

HIV01_RS00480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: fusA
locus tag: HIV01_RS00480
old locus tag: HIV01_000480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007513789.1
GO function: GO:0003746 - translation elongation factor activity [Evidence IEA]
GO process: GO:0006414 - translational elongation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: elongation factor G
translation: MSYSTQSIRNVALAGHPGAGKTTLFEALLQAGGAIQTAGSIERGSTVSDFDAIEKQRGHSIDSAIASIDHAAANGQIIHLNLIDTPGYPDFRGPALSAFGAVETVVIVVDADSGVEYGTRRMMEYAKGRNLCRALVINKIDHEAASVERVLADLRDTFGPECLPLNLPADGGKKVIDCLGNTTGDSDLGPVADWHQKIIDQIVEINESVMEHYLDVGEGGLSGDELHDAFEQCMREGHLVPVLFCSARNNVGVRKLLDIAEQWFPNPAEANPPPFERGADRQRFQAVPDQKAHVVADVFKIINDPFVGKLGIFRVYQGLVKKDTQLFIDDGKKPFKVGHLFKLKGKDHVEIDQALPGDIAAVAKVDELHFDAVLHDSHDEDQIRLAPLDFPKPMFGLAVDAASKGQEQKLATALHKLAEEDPCFVVEHEAETNETVIRGLSDLHLRINLERLKDRYGVEVKSRPPRIAYRETVSGKAEGHHRHKKQTGGAGQFGEVFLRIEPLPRGGGFEFVDEVKGGTIPGQFMPAVEKGVRQVLGSGAVAGYPIQDVRVIVYDGKHHPVDSKEVAFVAAGKKAFLDAIGKARPQVLEPIVELEVNAPEQHMGDVSGGLASKRARISGTDSVRGNEIVVKAQVPLSELEGYAAELKSVTAGRGRYSLDFSHYEPVPANVQQKLVEAYKPRQDED
SIO_010081: HIV01_RS00480
subclass of: SO_0000673
so part of: HIV01_RS00480
location: complement(92079..94136)
location: region:92079-94136:-1
so has part: feature:92079-94136:-1:exon

WP_200604338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:92079-94136:-1:exon

HIV01_RS00485
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00485
old locus tag: HIV01_000485
so part of: sequence
location: 94390..94824
location: region:94390-94824:1
so has part: feature:94390-94824:1:exon
subclass of: SO_0000010

position:94390:1
position: 94390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94824:1
position: 94824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94390-94824:1:exon

HIV01_RS00485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00485
old locus tag: HIV01_000485
EC number: 1.11.1.15
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004147570.1
GO component: GO:0005829 - cytosol [Evidence IEA]
GO function: GO:0004601 - peroxidase activity [Evidence IEA]; GO:0051920 - peroxiredoxin activity [Evidence IEA]
GO process: GO:0006972 - hyperosmotic response [Evidence IEA]; GO:0033194 - response to hydroperoxide [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: OsmC family protein
translation: MAFKRFAEAVWQGDLQSGKGAMSTPQSGLFADQNYSFKTRFGDEKGTNPEELLAAAHAGCFSMALSAVLGKSGFTPERIQTRAEVTMDPGMDPGPTITGVQLILTAKVPGLSAEQFQQIAEAAKAGCVISRALSVPVTLSATLG
SIO_010081: HIV01_RS00485
subclass of: SO_0000673
so part of: HIV01_RS00485
location: 94390..94824
location: region:94390-94824:1
so has part: feature:94390-94824:1:exon

WP_200604339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:94390-94824:1:exon

HIV01_RS00490
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00490
old locus tag: HIV01_000490
so part of: sequence
location: 94833..95519
location: region:94833-95519:1
so has part: feature:94833-95519:1:exon
subclass of: SO_0000010

position:94833:1
position: 94833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:95519:1
position: 95519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94833-95519:1:exon

HIV01_RS00490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00490
old locus tag: HIV01_000490
inference: COORDINATES: protein motif:HMM:NF024109.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha/beta fold hydrolase
translation: MPPAQVHDAVLVHGAGGGGWEWDIWRRVLQARGIACACMDLEPVAAGLSATTFDDYRAQVQIALDALPRPRVLIGASLGGLLAASCAASADALVLVNPLPPEPWSAQLPQREWPDVVPWRRDARLASTRRALADADDATALFAFRRWRDESGAVLRQAQSGVAVAVPQCPVLVIASELDEDVPAEVTATVAEAWGASLLRMPGSTHVGPLLGRDAASVAAQVVDWLKG
SIO_010081: HIV01_RS00490
subclass of: SO_0000673
so part of: HIV01_RS00490
location: 94833..95519
location: region:94833-95519:1
so has part: feature:94833-95519:1:exon

WP_200604340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:94833-95519:1:exon

HIV01_RS00495
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00495
old locus tag: HIV01_000495
so part of: sequence
location: complement(95571..96467)
location: region:95571-96467:-1
so has part: feature:95571-96467:-1:exon
subclass of: SO_0000010

position:95571:-1
position: 95571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:96467:-1
position: 96467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95571-96467:-1:exon

HIV01_RS00495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00495
old locus tag: HIV01_000495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010369373.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0016853 - isomerase activity [Evidence IEA]
GO process: GO:0009058 - biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PhzF family phenazine biosynthesis protein
translation: MTLRRYLQLDVFADRPGAGNPLAVVLDTDGLDDDRMQAIARWTRLPETTFVFAPTQAGASYRIRMFSPRREVPFAGHPSVGTAHVVLEAGLAEASGGQLIQEGVAGLLPLAVNGNGASRTIAVRTPKARVVEIADGSDPRLQPALSGLTLGALPPALMDGGRRWWLAEMASESALRGANPDWDAIAALAEGTASMGLCAFARADAGRDYDLVVRAFVGAPARFEDAASGAANATLAAWLSHNHALPGRPQDDGGHRYTVSQGREVGFDARLELRVDGDGEVWSGGQICNVVRGTIDWA
SIO_010081: HIV01_RS00495
subclass of: SO_0000673
so part of: HIV01_RS00495
location: complement(95571..96467)
location: region:95571-96467:-1
so has part: feature:95571-96467:-1:exon

WP_200604341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:95571-96467:-1:exon

HIV01_RS00500
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00500
old locus tag: HIV01_000500
pseudo: true
so part of: sequence
location: 96652..99250
location: region:96652-99250:1
so has part: feature:96652-99250:1:exon
subclass of: SO_0000010

position:96652:1
position: 96652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99250:1
position: 99250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96652-99250:1:exon

HIV01_RS00500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00500
old locus tag: HIV01_000500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014090660.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: bifunctional aspartate kinase/diaminopimelate decarboxylase
SIO_010081: HIV01_RS00500
subclass of: SO_0000673
so part of: HIV01_RS00500
location: 96652..99250
location: region:96652-99250:1
so has part: feature:96652-99250:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:96652-99250:1:exon

HIV01_RS00505
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: murL
locus tag: HIV01_RS00505
old locus tag: HIV01_000505
so part of: sequence
location: 99247..100608
location: region:99247-100608:1
so has part: feature:99247-100608:1:exon
subclass of: SO_0000010

position:99247:1
position: 99247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100608:1
position: 100608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99247-100608:1:exon

HIV01_RS00505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: murL
locus tag: HIV01_RS00505
old locus tag: HIV01_000505
EC number: 5.1.1.23
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013534495.1
GO function: GO:0016855 - racemase and epimerase activity, acting on amino acids and derivatives [Evidence IEA]
GO process: GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase
translation: MSEWKFKRDAIRAFRFVRCEFDAQTGVAQLVYAFDDGPELIETVTVPGAPFVLEGERAAAVERALRLLHLFTGVSYYKAAVPEQILIDSYDIDADTAALLELLYVNGLGEFAYRNGLNLHGRIKFPVGGASAPAAPALGLRHHALVAIGGGKDSLVSIEALRALGVEQTVTWIGGSQLIRACAERTGLPTFNIGRSLAPQLFDYNREGAWNGHIPVTAINSMIMLFAALLLGVDQVVFSNERSASYGSLIEGTGEVNHQWSKGWACESAIGDHVQRHIAADLHYYSLLRPLSELAVARQFTRTDRYDAHFSSCNRNFHILGERPANRWCGVCPKCHFVFLALAPFMPKPRLMGIFGRNLLDDPAQTAGYDALLEYQDHKPFECVGEGRESRAAMAALTVRPEWREDALVERFATEIRPQLDAEDLRIEPLLVIDDEQRIPPALWERLRAHLAA
SIO_010081: HIV01_RS00505
subclass of: SO_0000673
so part of: HIV01_RS00505
location: 99247..100608
location: region:99247-100608:1
so has part: feature:99247-100608:1:exon

WP_200604343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:99247-100608:1:exon

HIV01_RS00510
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: murD
locus tag: HIV01_RS00510
old locus tag: HIV01_000510
so part of: sequence
location: 100589..102007
location: region:100589-102007:1
so has part: feature:100589-102007:1:exon
subclass of: SO_0000010

position:100589:1
position: 100589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102007:1
position: 102007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100589-102007:1:exon

HIV01_RS00510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: murD
locus tag: HIV01_RS00510
old locus tag: HIV01_000510
EC number: 6.3.2.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017356984.1
GO function: GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [Evidence IEA]
GO process: GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
translation: MRISQLEGRRVALWGWGREGRAAYHAIRSRLTQLPLTLFCSRDEAAEVAALADPALTTETEASTERLSAFDVVVKSPGISPYGNEASAAAARGTRFIGGTALWFGEHARSDGVVAGSICVTGTKGKSTTTALLAHLLRCGGHVTALAGNIGMPLLEVLDPKQSPEFWAIELSSYQTGDVAASGAHPQVAVVLNVFPEHLDWHGSHERYVEDKLRLLTHAAPAIAVLNSNDARLVAAGVAASRDAGTDVRWFGDRNGWHLREDALYRGDTWVMDTRSLPLPGRHNRGNLCAVLTAIEALGLDAVALAPHAADFQPLPHRLQTIGTRDGITYVNDSISTTPHASLAALDCFGDRRVALLVGGHDRGLPWEEFAEAMRMQAPAAVITMGQNGPRIHALLAAIASESGFHLSAAVDLADAMAQARAVLGEEGVVLLSPGAPSFGPYRDYVARGRHFAELAGFDPDMISAIAGIGVS
SIO_010081: HIV01_RS00510
subclass of: SO_0000673
so part of: HIV01_RS00510
location: 100589..102007
location: region:100589-102007:1
so has part: feature:100589-102007:1:exon

WP_200604344.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:100589-102007:1:exon

HIV01_RS00515
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00515
old locus tag: HIV01_000515
so part of: sequence
location: 102110..102895
location: region:102110-102895:1
so has part: feature:102110-102895:1:exon
subclass of: SO_0000010

position:102110:1
position: 102110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102895:1
position: 102895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:102110-102895:1:exon

HIV01_RS00515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00515
old locus tag: HIV01_000515
EC number: 3.1.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019237462.1
GO component: GO:0005829 - cytosol [Evidence IEA]
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dienelactone hydrolase family protein
translation: MQRLMLAAVLSLCSLPAMAAMVEKPVDWTIGKDTFTGVLVYDGTNAIKRPGLVMVPNWKGINPAAIEKARQIAGDDYVVLVADVYGSKIRPTTDEEAGKVAGPLREDRATLRARAEKSVAVLKEQAGKVPLDATRIGALGFCFGGTTALELVRGGDELAGVVSLHGALATPVPTKDDGARTPVLVLNGADDRSVTDEDIAAFEKEMDAAGADWQFVNFSGAVHCFAEPEANNPPGCAYNERAAKRAYEMMFDFFRERFAAK
SIO_010081: HIV01_RS00515
subclass of: SO_0000673
so part of: HIV01_RS00515
location: 102110..102895
location: region:102110-102895:1
so has part: feature:102110-102895:1:exon

WP_200604345.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:102110-102895:1:exon

HIV01_RS00520
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00520
old locus tag: HIV01_000520
so part of: sequence
location: complement(102906..103919)
location: region:102906-103919:-1
so has part: feature:102906-103919:-1:exon
subclass of: SO_0000010

position:102906:-1
position: 102906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:103919:-1
position: 103919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:102906-103919:-1:exon

HIV01_RS00520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00520
old locus tag: HIV01_000520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020850886.1
GO process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polyprenyl synthetase family protein
translation: MQSSPTLLAVPDLVAIQALAREDMAAVDALIRRRLASDVVLINQVAEYIVGAGGKRLRPMLLLLATGALGGRNGEGIGADAHQLAAVVEFIHTATLLHDDVVDESDLRRGRRTANAVWGNAASVLVGDFLYSRSFQLMVELERMPVMQILADTTNRIAEGEVLQLLHVRNPDTDEAAYLRVIERKTAVLFAAATRLGALLCDADEATCDAMHDYGLNLGYAFQIADDVLDYASDAQTLGKNLGDDLAEGKATLPLIHAIAHSDEATRALLRAAIEQGDTGALPQVLAAIHATGGLDYSRRRASEYAQAAERALDGLEDNDYTAALRGLARYAVSRDH
SIO_010081: HIV01_RS00520
subclass of: SO_0000673
so part of: HIV01_RS00520
location: complement(102906..103919)
location: region:102906-103919:-1
so has part: feature:102906-103919:-1:exon

WP_207527035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:102906-103919:-1:exon

HIV01_RS00525
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00525
old locus tag: HIV01_000525
so part of: sequence
location: 104140..104493
location: region:104140-104493:1
so has part: feature:104140-104493:1:exon
subclass of: SO_0000010

position:104140:1
position: 104140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104493:1
position: 104493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:104140-104493:1:exon

HIV01_RS00525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00525
old locus tag: HIV01_000525
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQDFNCDVALGLSVPGAMPPGAGTGAPVALPVWPGRRFVDLVSDSLRDVAGRDCDALYQLMANAIVQHLAAEVQGDDARRLAEEAMDRVLSLVSKDLQRQIAGARQAAEPRHFVRGA
SIO_010081: HIV01_RS00525
subclass of: SO_0000673
so part of: HIV01_RS00525
location: 104140..104493
location: region:104140-104493:1
so has part: feature:104140-104493:1:exon

WP_200604347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:104140-104493:1:exon

HIV01_RS00530
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00530
old locus tag: HIV01_000530
so part of: sequence
location: 104589..104918
location: region:104589-104918:1
so has part: feature:104589-104918:1:exon
subclass of: SO_0000010

position:104589:1
position: 104589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104918:1
position: 104918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:104589-104918:1:exon

HIV01_RS00530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00530
old locus tag: HIV01_000530
inference: COORDINATES: protein motif:HMM:NF028136.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5076 domain-containing protein
translation: MEEVRTITTTGQESLVEALAMPKGVEADPASFEILRLWVANGRLSMNLRHDIEGEAEDFGILLADLFSHACCKYAQRSGRSLMECREGMLLGFLQHTHARIRCGGLTGH
SIO_010081: HIV01_RS00530
subclass of: SO_0000673
so part of: HIV01_RS00530
location: 104589..104918
location: region:104589-104918:1
so has part: feature:104589-104918:1:exon

WP_245156876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:104589-104918:1:exon

HIV01_RS00535
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: ssb
locus tag: HIV01_RS00535
old locus tag: HIV01_000535
so part of: sequence
location: 105127..105639
location: region:105127-105639:1
so has part: feature:105127-105639:1:exon
subclass of: SO_0000010

position:105127:1
position: 105127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105639:1
position: 105639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:105127-105639:1:exon

HIV01_RS00535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: ssb
locus tag: HIV01_RS00535
old locus tag: HIV01_000535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011037865.1
GO function: GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: single-stranded DNA-binding protein
translation: MARGINKVILVGNLGDDPETKYTQGGMAVTKARLATTSVRKDREGNTQERTEWHRVTFFGKLGEIAGEYLRKGSQVYVEGSIRYDKYTGQDGVERYSTDIIADEMQMLGGRGEGGGGGGGAGRGEFRGGGDRSERPARAPARQESAPRREAPAAKSNDFADDFADDDIPF
SIO_010081: HIV01_RS00535
subclass of: SO_0000673
so part of: HIV01_RS00535
location: 105127..105639
location: region:105127-105639:1
so has part: feature:105127-105639:1:exon

WP_200604348.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:105127-105639:1:exon

HIV01_RS00540
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rfbB
locus tag: HIV01_RS00540
old locus tag: HIV01_000540
so part of: sequence
location: 105693..106745
location: region:105693-106745:1
so has part: feature:105693-106745:1:exon
subclass of: SO_0000010

position:105693:1
position: 105693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106745:1
position: 106745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:105693-106745:1:exon

HIV01_RS00540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rfbB
locus tag: HIV01_RS00540
old locus tag: HIV01_000540
EC number: 4.2.1.46
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013536109.1
GO function: GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-glucose 4,6-dehydratase
translation: MPTWLVTGGAGFIGGNFVLEAVRQGIRVVNLDVLTYAGNLDTLKSIQGDANHVFVQGDIGDAGLVESLLSEHRPDAVINFAAESHVDRSIDGPAAFVQTNVVGTLALLEKVRDYWKTLSGAASDTFRFLHVSTDEVYGTLGETGKFTEQTPFAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYQFPEKLIPLVIAKALAGESLPVYGDGRNVRDWLFVTDHCAAIRRVLEAGRIGETYNVGGDAERENIVVVKTICKLLDERNPLADGRSRETLIKFVPDRPGHDRRYAIDASKLHSELGWYPTVTFEQGMAQTVEWYLQNQPWVSRVLDGSYRLERIGQA
SIO_010081: HIV01_RS00540
subclass of: SO_0000673
so part of: HIV01_RS00540
location: 105693..106745
location: region:105693-106745:1
so has part: feature:105693-106745:1:exon

WP_200604349.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:105693-106745:1:exon

HIV01_RS00545
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rfbA
locus tag: HIV01_RS00545
old locus tag: HIV01_000545
so part of: sequence
location: 106756..107640
location: region:106756-107640:1
so has part: feature:106756-107640:1:exon
subclass of: SO_0000010

position:106756:1
position: 106756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:107640:1
position: 107640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106756-107640:1:exon

HIV01_RS00545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rfbA
locus tag: HIV01_RS00545
old locus tag: HIV01_000545
EC number: 2.7.7.24
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013536108.1
GO function: GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glucose-1-phosphate thymidylyltransferase RfbA
translation: MNRKGIILAGGSGTRLYPITQGISKQLLPVYDKPMIYYPLSVLMLAGIREVLIINTPHEQALFRSLLGDGSQWGMQIEYAVQPSPDGLAQAYLIGRDFVAGHPSCLVLGDNIFHGPGLTAMLKRAHERERGATVFGYWVSDPERYGVAEFDQSGKVIGLVEKPAQPKSNYAVTGMYFYDGRACDFASELKPSARNELEITDLNRMYLEDDSLHVELLGRGYAWLDTGTHQSLLEASNYIGTIEARQGLRVCCPEEIAWHNGWIDADRLSELAAPLSKNGYGQYLLSLAKRGHVP
SIO_010081: HIV01_RS00545
subclass of: SO_0000673
so part of: HIV01_RS00545
location: 106756..107640
location: region:106756-107640:1
so has part: feature:106756-107640:1:exon

WP_200604350.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:106756-107640:1:exon

HIV01_RS00550
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rfbC
locus tag: HIV01_RS00550
old locus tag: HIV01_000550
so part of: sequence
location: 107637..108194
location: region:107637-108194:1
so has part: feature:107637-108194:1:exon
subclass of: SO_0000010

position:107637:1
position: 107637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:108194:1
position: 108194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107637-108194:1:exon

HIV01_RS00550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rfbC
locus tag: HIV01_RS00550
old locus tag: HIV01_000550
EC number: 5.1.3.13
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012479085.1
GO function: GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-4-dehydrorhamnose 3,5-epimerase
translation: MKIVETDLPGCLVVEPRVFEDDRGYFFESFNADKFAELGLTPNFLQGNVSSSKRGVLRGLHYQWPNPQGKFVSVLEGEVWDVAVDIRRGSPHFGRWTAVLLSAANMRHLWIPEGFAHGFVTLSERSVFTYLCTATYDAQADASIRWNDASLAIDWPVTDVSLSAKDARAPFLDEIAEDRLPVYVP
SIO_010081: HIV01_RS00550
subclass of: SO_0000673
so part of: HIV01_RS00550
location: 107637..108194
location: region:107637-108194:1
so has part: feature:107637-108194:1:exon

WP_200604351.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:107637-108194:1:exon

HIV01_RS00555
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rfbD
locus tag: HIV01_RS00555
old locus tag: HIV01_000555
so part of: sequence
location: 108191..109084
location: region:108191-109084:1
so has part: feature:108191-109084:1:exon
subclass of: SO_0000010

position:108191:1
position: 108191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:109084:1
position: 109084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108191-109084:1:exon

HIV01_RS00555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rfbD
locus tag: HIV01_RS00555
old locus tag: HIV01_000555
EC number: 1.1.1.133
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017907511.1
GO function: GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-4-dehydrorhamnose reductase
translation: MKMLVPGANGQVGHALLRSLATLGEVAATTRSGRLEDGTGCEKFDLADLDAIASLLDRTRPDVVVNAAAYTAVDRAEDDIEAAFRTNAEGPRRLAVECAARGISLVHYSTDYVFDGQGSRPYREDDATAPIGVYGHSKLAGEQAIADSGARHLILRTAWVYGLHGANFLRTMLRVGAERDELRVVADQRGTPTPAWLIADATADILRNGFPESGIVHLVADGETTWHGFAEAIFDEAMSAGLISRRPVVTAITTADYPTRASRPAYSVLDTTRLQQQFGIEPPSWRQALQTLAAART
SIO_010081: HIV01_RS00555
subclass of: SO_0000673
so part of: HIV01_RS00555
location: 108191..109084
location: region:108191-109084:1
so has part: feature:108191-109084:1:exon

WP_207527036.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:108191-109084:1:exon

HIV01_RS00560
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00560
old locus tag: HIV01_000560
so part of: sequence
location: 109183..111177
location: region:109183-111177:1
so has part: feature:109183-111177:1:exon
subclass of: SO_0000010

position:109183:1
position: 109183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:111177:1
position: 111177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:109183-111177:1:exon

HIV01_RS00560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00560
old locus tag: HIV01_000560
EC number: 3.4.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019336989.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S9 family peptidase
translation: MKRVALLAALVALMPVAPVMAADGGIDVGDYVKKDEFTDVKLSPGGEYYAATVPLADRTALAVIERGTNKITGSFKLGRNAHVADFDWISRDRLLISLSDRFGELEQPLMTGELIAMNADGSKTEMLAGFRVDDGGLGTTIKPKKGSDSIGAFPIAAPYKESRTALVQVVPFSADPYPAIESIDVFSGRRARVAVSPVRRATFFTDNRGEVRFVAGSESDNVRKLYYRSGEGDGWALFGMEDSKGRFEYPIGFSADDKVVYLIAEQPKGPDKIVALDLASRERKIVLGDDNVDPEQIIYRNGTRIPLGAFFMDGKPRTAFIDETVPEAKLYHSLESAFAGSSVEITSQTSDGSLALIRVSSDLNPGDFYLFDTVNKKAAHVLARRQWFDPDKMSPMQAVKLAARDGLELQGYLTTPRGSSGKGLPLVVMPHGGPFGIQDAWGFNDEAQMLAAAGYAVLQVNYRGSGGYGLAFRQAGAQEWGGTMQDDLTDATKWAIAQGVANKDRICLYGASYGGYAALMGVAKEPTLYRCAAGYVGVYDLPKMVADDKRVLTRWGNWSMDWVGKPADLGAVSPNRMADRIKVPVFLAAGGEDTTAPIEHSKMMEQALRKAGTPVESLYFDTEGHGFYLPEHKSEYYTRLLAFLSRSLGGAVAATGAGDAKSAK
SIO_010081: HIV01_RS00560
subclass of: SO_0000673
so part of: HIV01_RS00560
location: 109183..111177
location: region:109183-111177:1
so has part: feature:109183-111177:1:exon

WP_200604353.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:109183-111177:1:exon

HIV01_RS00565
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00565
old locus tag: HIV01_000565
so part of: sequence
location: complement(111245..113032)
location: region:111245-113032:-1
so has part: feature:111245-113032:-1:exon
subclass of: SO_0000010

position:111245:-1
position: 111245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:113032:-1
position: 113032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:111245-113032:-1:exon

HIV01_RS00565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00565
old locus tag: HIV01_000565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017917452.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0015333 - peptide:proton symporter activity [Evidence IEA]
GO process: GO:0015833 - peptide transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: oligopeptide:H+ symporter
translation: MSTIAAPAVPGDVVIRDARDELFGHPKGVYVCFFTEMWERFSFYGMKALLLLYLLQHHKFGDRSGLDVLGAYGGLVYCLPVVGGLLADRFLGMRKAVVFGGLLLVAGHLGMAVEGHAATITNGVVVRDEGSLRVFYLSLSLIILGVGFLKPNISTIVGRLYPDNDPRRDSGFSLFYAGINLGALFASLVCGYLGQTLGWNWGFGAAGIGMLLGLGQFLWGQKYLHGHAEPPDPARLRERVFGLPREWAIYLGTMLGLVPVAALMWAVANGRFALGGEVSLALLLMLLVMLAVLAWFAWFVTARCTQVQRQQMISLLAMIFMCLVFFTLYEQTYGSWVTFTDRMLTKDVAPSLVIREGTPWPWSTISLLLAPLAFMVSAALSDRHPESRMPKVLFASAVLVMLVFLLRDCLVLPQTAGSLTYLGALFLVLLAPLFGRLWDVLDRRGMDPSKPVKSAFGLLFAGLSFIPLAMAAQQAGASGEVASVWWLVLAYLVLEIGEMCLAPVGLAAVTQLSVKSVVSLMMGTWFLATAFSETLAALFGKLAAIDIPEGTTLDFAVAGSKYESLFWLMMWIGIGWAVVALIASPMLRRMMHGVK
SIO_010081: HIV01_RS00565
subclass of: SO_0000673
so part of: HIV01_RS00565
location: complement(111245..113032)
location: region:111245-113032:-1
so has part: feature:111245-113032:-1:exon

WP_200604354.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:111245-113032:-1:exon

HIV01_RS00570
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00570
old locus tag: HIV01_000570
so part of: sequence
location: 113172..115178
location: region:113172-115178:1
so has part: feature:113172-115178:1:exon
subclass of: SO_0000010

position:113172:1
position: 113172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:115178:1
position: 115178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113172-115178:1:exon

HIV01_RS00570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00570
old locus tag: HIV01_000570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007805863.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0035673 - oligopeptide transmembrane transporter activity [Evidence IEA]
GO process: GO:0006857 - oligopeptide transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: oligopeptide transporter, OPT family
translation: MTSTSLSDTAPRTELTVRSLILGVVITLLFTAANVFFGLKAGLTFATSIPAAVISMALLRNFKDSTIQENNIVQTVASSAGTLSSIIFVLPGLVMIGWWTGFPYWESFAICALGGILGVMYSIPLRRALVTNSDLPYPEGVACAEVLKVGSGGDSSTASGVEESRYGLLAVVWGSVVAAAFSLIVATRIFGSNVGAYFRLGGDRGGVTGFDFTLSMALLAVGHLVGLWVGVAMGVGALIAWGWAVPHYSALAATAGPAADLGQATWATYVRFIGAGTIGVAAIWTLAKLVKPVVSGLSSAMAASRIRKAGQAGSLPRQEQDIPIGVVGLISIACFIPIAFLLGHFALGSGLGEHMWKLVIGGLLYVIVMSFLVSAVCGYMAGLIGSSNSPLSGIGILVVIGAALLLVFGIKPLLAPGNEKGLVAFALFVTAVVFAVATIANNNLQDLKTGQLVDATPSKQQWALVVGVLAGAAIIPPILDLLNQAYGFTGAPGAVPGRALAAPQAGLISALAQGVILGNIDWSLIRIGAYIGAGLIVIDIILRRTTKSAHLSPLAVGLGIYLPTSATLMVVVGAVIGWLYDRRAERSAKPESTKQMGVLLASGMIVGEGLIGVAIAAIVAFSGEDFPLGLVGDGFAGPAVWIGGAAFVAAVFVLYRWAERVSAKAAAA
SIO_010081: HIV01_RS00570
subclass of: SO_0000673
so part of: HIV01_RS00570
location: 113172..115178
location: region:113172-115178:1
so has part: feature:113172-115178:1:exon

WP_245156877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:113172-115178:1:exon

HIV01_RS00575
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00575
old locus tag: HIV01_000575
so part of: sequence
location: 115319..117388
location: region:115319-117388:1
so has part: feature:115319-117388:1:exon
subclass of: SO_0000010

position:115319:1
position: 115319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:117388:1
position: 117388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:115319-117388:1:exon

HIV01_RS00575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00575
old locus tag: HIV01_000575
EC number: 3.4.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017169463.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S9 family peptidase
translation: MTFRRALLPLMLAAALSPLAASAAPRGFEVRDMATLDRVSSPTLSPDGRRVVFAKRVVDFAANKGASSLWIEDLFARDAAPPVRLTPEGWNVNSPSFSADGKTVYFLSAKSGSSQLYSIPASGGTPKQLTAFSTDVGGYKLSPDGKRIAFNAEVFADCKGDFACSAKRLDDKGKQKNSGMLFDRIFIRHWDAWNDGRLNRLFVTAVTDKPATTATLVSFDVIGDVPSRPFGDSSEYTWAPDGQSLVFSARIADAKEPTSTNFDLYQVSADGTGTAKNLTTANPAWDTGATFSADGKTLYYRAMKRPGFEADRFALIALDLASGQRREIAPQWDRSADGITLSADGKSIYTTATDMGEHPLFAVDIASGKASKLIGEGSVSAIDLAGPTLALTRNSLKSGDVLYTTSSDATAPLRAITATTGETLKDVAFGDFEQFNFKGWNGDTVHGYVVKPWNYVEGKKYPVAFLIHGGPQGSFGNGWSYRWNPQTYAGQGYAVVMIDFHGSTGYGQAFTDAISQHWGDRPLEDLQKGWAAAQQKYGFLNGDKACALGASYGGFMVNWIAGNWNQPWKCLVNHDGVFDQRMMGFATEELWFTEWEQGGTAIDKAANYEKFNPVNHVKDWRVPMLVVHGQLDFRIPVEQGIGAFTTLQLKGIESKFLYFPDENHWVLKPQNSVQWHDTVNAWLKQHIGE
SIO_010081: HIV01_RS00575
subclass of: SO_0000673
so part of: HIV01_RS00575
location: 115319..117388
location: region:115319-117388:1
so has part: feature:115319-117388:1:exon

WP_200604356.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:115319-117388:1:exon

HIV01_RS00580
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00580
old locus tag: HIV01_000580
so part of: sequence
location: complement(117440..118507)
location: region:117440-118507:-1
so has part: feature:117440-118507:-1:exon
subclass of: SO_0000010

position:117440:-1
position: 117440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:118507:-1
position: 118507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117440-118507:-1:exon

HIV01_RS00580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00580
old locus tag: HIV01_000580
EC number: 1.13.12.-
inference: COORDINATES: protein motif:HMM:NF015047.2
GO function: GO:0010181 - FMN binding [Evidence IEA]; GO:0016703 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nitronate monooxygenase
translation: MWHDNDFTRRLGLRYPIVQGPFGGGLSSIDLMVAVSEAGGLGSFGAHHLAPEKLGDLTRQIRARTQRPFALNLWVSNQDPGGDRLSADQFAAAIERFRPYYDALGMTPPPMPERYGQRFEDQVQAMLDAAPPVMSFVFGIPSPAILSECRSRGIATMGTITTIDEAIAMDQAGVDVIVATGFEAGGHRVSFLRSAEESLTGTLALIPQVADRVSRPVIAAGGIADGRGVAAALTLGAQGVQIGTAFLACEESGTNELHRRMLFTDDAKYTALTRAFSGRLARGIRNRFVEEWEGVAPLPYPIQNWFTGTFKATAAAQGRGDMISLWAGQGAPLLKHRHAQELFDALVAETAALLR
SIO_010081: HIV01_RS00580
subclass of: SO_0000673
so part of: HIV01_RS00580
location: complement(117440..118507)
location: region:117440-118507:-1
so has part: feature:117440-118507:-1:exon

WP_200604357.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:117440-118507:-1:exon

HIV01_RS00585
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00585
old locus tag: HIV01_000585
so part of: sequence
location: 119190..119534
location: region:119190-119534:1
so has part: feature:119190-119534:1:exon
subclass of: SO_0000010

position:119190:1
position: 119190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119534:1
position: 119534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119190-119534:1:exon

HIV01_RS00585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00585
old locus tag: HIV01_000585
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASGIRLLAAVLLILALALSWKAVSMLGASSHFGSPAMQLCSALGDPVDFAKACETFKSQVLAMSGQYSEALKLLVMAAIAAFFLGAAALNLSFRREGAPPDSSLKSKPLSGSA
SIO_010081: HIV01_RS00585
subclass of: SO_0000673
so part of: HIV01_RS00585
location: 119190..119534
location: region:119190-119534:1
so has part: feature:119190-119534:1:exon

WP_200604358.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:119190-119534:1:exon

HIV01_RS00590
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00590
old locus tag: HIV01_000590
so part of: sequence
location: 119551..119967
location: region:119551-119967:1
so has part: feature:119551-119967:1:exon
subclass of: SO_0000010

position:119551:1
position: 119551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119967:1
position: 119967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119551-119967:1:exon

HIV01_RS00590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00590
old locus tag: HIV01_000590
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTNINRLPTKSETFFGAIFSVLLSCGLGYVVWYLLRTASGRPELLTPGTISVLAVLSIIFAWSSALFLRILFGSPKLPGFRGQAVMGYFMATAGLVLCLGSMLISNQRPALYFSQGVCAIGLGLFWVAQARKAARRRA
SIO_010081: HIV01_RS00590
subclass of: SO_0000673
so part of: HIV01_RS00590
location: 119551..119967
location: region:119551-119967:1
so has part: feature:119551-119967:1:exon

WP_200604359.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:119551-119967:1:exon

HIV01_RS00595
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00595
old locus tag: HIV01_000595
so part of: sequence
location: 120028..120354
location: region:120028-120354:1
so has part: feature:120028-120354:1:exon
subclass of: SO_0000010

position:120028:1
position: 120028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:120354:1
position: 120354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120028-120354:1:exon

HIV01_RS00595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00595
old locus tag: HIV01_000595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008213065.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nucleotide pyrophosphohydrolase
translation: MKLSDLEKSALQLNKLYEQLELKRYGRIWSTEELALGFVGDVGDLAKLIQANAGIRTIDDCKAKLGHELSDCLWSIIVLANKCGIDLEAEFVKNTRELAEYVAGELDT
SIO_010081: HIV01_RS00595
subclass of: SO_0000673
so part of: HIV01_RS00595
location: 120028..120354
location: region:120028-120354:1
so has part: feature:120028-120354:1:exon

WP_200604361.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:120028-120354:1:exon

HIV01_RS00600
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00600
old locus tag: HIV01_000600
so part of: sequence
location: 120406..120771
location: region:120406-120771:1
so has part: feature:120406-120771:1:exon
subclass of: SO_0000010

position:120406:1
position: 120406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:120771:1
position: 120771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120406-120771:1:exon

HIV01_RS00600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00600
old locus tag: HIV01_000600
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSGCVLRAAGSAFSPESFLAAFPLPEANHRGNALNVVVSDRDGADLAGQVRDALAFLQLHAPAVRALLAMPGVEASLDFGLWRKDTLSQSVLFPPTLTAFAGELGLGLEVSLYVATPPRSI
SIO_010081: HIV01_RS00600
subclass of: SO_0000673
so part of: HIV01_RS00600
location: 120406..120771
location: region:120406-120771:1
so has part: feature:120406-120771:1:exon

WP_200604362.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:120406-120771:1:exon

HIV01_RS00605
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00605
old locus tag: HIV01_000605
so part of: sequence
location: 120813..121313
location: region:120813-121313:1
so has part: feature:120813-121313:1:exon
subclass of: SO_0000010

position:120813:1
position: 120813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121313:1
position: 121313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120813-121313:1:exon

HIV01_RS00605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00605
old locus tag: HIV01_000605
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MWFALLVLSLLAASIHVRVRPTGSKAASAELVLVYLLAGYCGFAQIIRAFAILVKGAPLMAHVQFTPGDPAVMWLAFFSLGCGAIGALSIWKRGDFLLAPVVVWAIFWTGTTFAHLRMDEWHGITNSWVGVAWAFATHGLIAVLLVAFYSLSIRRPPVASGQASAA
SIO_010081: HIV01_RS00605
subclass of: SO_0000673
so part of: HIV01_RS00605
location: 120813..121313
location: region:120813-121313:1
so has part: feature:120813-121313:1:exon

WP_200604363.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:120813-121313:1:exon

HIV01_RS00610
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00610
old locus tag: HIV01_000610
so part of: sequence
location: 121826..122065
location: region:121826-122065:1
so has part: feature:121826-122065:1:exon
subclass of: SO_0000010

position:121826:1
position: 121826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122065:1
position: 122065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:121826-122065:1:exon

HIV01_RS00610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00610
old locus tag: HIV01_000610
inference: COORDINATES: protein motif:HMM:NF018599.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1272 domain-containing protein
translation: MRPGCECCNVDLAPDSQDAWICSFECTFCTNCVESKLGGRCPNCGGAFSRRPTRVGGALERNPASTVRVFKPSGCAPAA
SIO_010081: HIV01_RS00610
subclass of: SO_0000673
so part of: HIV01_RS00610
location: 121826..122065
location: region:121826-122065:1
so has part: feature:121826-122065:1:exon

WP_245157022.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:121826-122065:1:exon

HIV01_RS00615
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00615
old locus tag: HIV01_000615
so part of: sequence
location: 122617..125394
location: region:122617-125394:1
so has part: feature:122617-125394:1:exon
subclass of: SO_0000010

position:122617:1
position: 122617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:125394:1
position: 125394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:122617-125394:1:exon

HIV01_RS00615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00615
old locus tag: HIV01_000615
inference: COORDINATES: protein motif:HMM:NF012311.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: autotransporter domain-containing protein
translation: MPTRLDAPPAVGDEHLRVMHAVDAHLNGHKGNGQFIALFDTGALRTPALDQHLWWSNDSDLVDRDHADYTRDDVNGHGTATALAAIGRAQGSWSGGIAPDANLSVMRIIPDQPTLGNPFGQPTVEAGLTALERGLSGKSAFTRAAGFTWDGNFQWTDPAISTRLFNAFATFVDSSTNFPPDDGLVVFAAGDGGKAEPSQMAKLPSLAGAPASLADHWITVAAVETARPNRLAAYSNGCGAAMNYCLVAPGDMTLVGKDDTAGNPTYWTMSSTQVAAPLVLGATTLVWGAFPNLSGEQVRDILLGTTTDLGVPGTDPIFGQGLINIEKALRGPGRLDWGDMNVFLLYDTDTIWWNDISGRAGINVTGSGGWLLLHGNNTFEGPLHIKGRADVTVNGSLAADIEIERDGLLYASEVTLEGDVTNRGSLLFNTSATPQSPTVMKGDVINEGFMANWGNTDATTMEGNLTLRASSLYQIELGAPPLHVNGHADIDGKLQVVGVAPGYVARSNTEVLIADGGIDGTFSELKLMGLMVQATLGYDANRVWLDVTQIPATTAVGMAFTPASFSAAERLDGAFGKLDEREARKSGNSADRDRDDVAAFANGAGTLQRIADQGALQESLDSLSGELHGADLPFATMAIEDNRHALESRIDALREGPAGIWTDELRSRREMGRFDMDAQGWTMGMDLRHDNRLTVGAALSEVNGTAYHAQRGDREVNRQYDGQLYATWALGSGYLLGTTSFGQMQRWTRREVLLGANAFRVGTDYTQRYATAGLQAGMPLAWNSGSVTLYGGAQGMQFERNGFDESGAAGFGLTTQDSTLHAAQAHLGTRLQQEGSIGPVTWRLHGRLEWQRMLSTSGEELQARFSAVDAWAPVDVEGLAREAGVFGLGFDARFGRRGVLGLNVDSRREHGEIWSGAMATWSVAY
SIO_010081: HIV01_RS00615
subclass of: SO_0000673
so part of: HIV01_RS00615
location: 122617..125394
location: region:122617-125394:1
so has part: feature:122617-125394:1:exon

WP_207527037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:122617-125394:1:exon

HIV01_RS00620
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00620
old locus tag: HIV01_000620
so part of: sequence
location: 125557..125793
location: region:125557-125793:1
so has part: feature:125557-125793:1:exon
subclass of: SO_0000010

position:125557:1
position: 125557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:125793:1
position: 125793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:125557-125793:1:exon

HIV01_RS00620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00620
old locus tag: HIV01_000620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005417525.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKALIAIVAWCILFVLCWPLALLALVLWPIAWLVSLPFRLVGVTFSALFALLGAILFLPARILGWRSGSTQPRSAAVA
SIO_010081: HIV01_RS00620
subclass of: SO_0000673
so part of: HIV01_RS00620
location: 125557..125793
location: region:125557-125793:1
so has part: feature:125557-125793:1:exon

WP_200604367.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:125557-125793:1:exon

HIV01_RS00625
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00625
old locus tag: HIV01_000625
so part of: sequence
location: 125849..126235
location: region:125849-126235:1
so has part: feature:125849-126235:1:exon
subclass of: SO_0000010

position:125849:1
position: 125849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126235:1
position: 126235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:125849-126235:1:exon

HIV01_RS00625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00625
old locus tag: HIV01_000625
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: VOC family protein
translation: MTAVHQITPFLHVPDLQEALAFFCKLGFELRFRESNYAYIELAGCGLRLLEEPARRLTADGKARVAVYIDVADIDALHDELAPALASLPGDRVEPLMNRPWRQREFQVRMPDGDWLTFGAAVTTDPVR
SIO_010081: HIV01_RS00625
subclass of: SO_0000673
so part of: HIV01_RS00625
location: 125849..126235
location: region:125849-126235:1
so has part: feature:125849-126235:1:exon

WP_200604368.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:125849-126235:1:exon

HIV01_RS00630
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00630
old locus tag: HIV01_000630
so part of: sequence
location: 126347..126817
location: region:126347-126817:1
so has part: feature:126347-126817:1:exon
subclass of: SO_0000010

position:126347:1
position: 126347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126817:1
position: 126817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126347-126817:1:exon

HIV01_RS00630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00630
old locus tag: HIV01_000630
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFGLFQSAPFSDPMLGELVRWRGFWRGSIQLESGSAPLVLAGTRAEPDPMALAVANEVQARLAGWRATIETAMFEHYQPYAESLAAGEEAGDGFPGITTPAGVWPHVSLQYIAVLPLSGHLTTELGYTAAWDEEHTLGMRFKGDAFVELCGSVLAP
SIO_010081: HIV01_RS00630
subclass of: SO_0000673
so part of: HIV01_RS00630
location: 126347..126817
location: region:126347-126817:1
so has part: feature:126347-126817:1:exon

WP_200604369.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:126347-126817:1:exon

HIV01_RS00635
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00635
old locus tag: HIV01_000635
so part of: sequence
location: 126964..127422
location: region:126964-127422:1
so has part: feature:126964-127422:1:exon
subclass of: SO_0000010

position:126964:1
position: 126964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:127422:1
position: 127422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126964-127422:1:exon

HIV01_RS00635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00635
old locus tag: HIV01_000635
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRVSGYPTSTFASSALLFFGSGLAATLLFSAKPLESLIGVAVACIGLSIMFWRWRQRSFASRLLQHGTALEARITRVLAGGLFQVNGGSPYRIEAQWVDPVTGEVRIFRSWNLWNDPAVFIRHEHVVVHIDPQRSDRYYMDVSFLPEFQQA
SIO_010081: HIV01_RS00635
subclass of: SO_0000673
so part of: HIV01_RS00635
location: 126964..127422
location: region:126964-127422:1
so has part: feature:126964-127422:1:exon

WP_200604370.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:126964-127422:1:exon

HIV01_RS00640
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00640
old locus tag: HIV01_000640
so part of: sequence
location: 127434..127979
location: region:127434-127979:1
so has part: feature:127434-127979:1:exon
subclass of: SO_0000010

position:127434:1
position: 127434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:127979:1
position: 127979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:127434-127979:1:exon

HIV01_RS00640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00640
old locus tag: HIV01_000640
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006450667.1
GO function: GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cold shock domain-containing protein
translation: MGARTHGTLSKWNDDRGFGFITPAQGTAEIFVHVSSFPSGGPRPTEGELISFETQAGPDGKVRAIRVMRTGSAAKSTPRHRPAPARVRISLTGVLTAAAIAAIAMYGYREFVSSSPVESVVATPVARVAASPVVAQFKCDGRTMCFQMTSCAEAKYFLQHCPNTQMDGNGDGQPCERQWCN
SIO_010081: HIV01_RS00640
subclass of: SO_0000673
so part of: HIV01_RS00640
location: 127434..127979
location: region:127434-127979:1
so has part: feature:127434-127979:1:exon

WP_200604373.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:127434-127979:1:exon

HIV01_RS00645
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00645
old locus tag: HIV01_000645
so part of: sequence
location: 128141..128560
location: region:128141-128560:1
so has part: feature:128141-128560:1:exon
subclass of: SO_0000010

position:128141:1
position: 128141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128560:1
position: 128560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:128141-128560:1:exon

HIV01_RS00645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00645
old locus tag: HIV01_000645
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQNPYQAPAATLAELSMGGDNTSGMGKDATIPPGVAGWSWGAFLLNWIWAVSNRTWIGLLCFIPYVGFVMSIVLGIKGREWAWRNKRWDSVEHFQRVQRKWSIWSLVVIVGVMGLAILAAIAIPAYQDYVVRAQAAAAG
SIO_010081: HIV01_RS00645
subclass of: SO_0000673
so part of: HIV01_RS00645
location: 128141..128560
location: region:128141-128560:1
so has part: feature:128141-128560:1:exon

WP_200604374.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:128141-128560:1:exon

HIV01_RS00650
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00650
old locus tag: HIV01_000650
so part of: sequence
location: complement(128690..128890)
location: region:128690-128890:-1
so has part: feature:128690-128890:-1:exon
subclass of: SO_0000010

position:128690:-1
position: 128690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:128890:-1
position: 128890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:128690-128890:-1:exon

HIV01_RS00650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00650
old locus tag: HIV01_000650
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018974767.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CstA-like transporter-associated (seleno)protein
translation: MLGLELLARWWRAAAQTARLAIGIPDYDNYVEHIQRNHPDRLPMSRDEFFHERMMARYGKGRSRCC
SIO_010081: HIV01_RS00650
subclass of: SO_0000673
so part of: HIV01_RS00650
location: complement(128690..128890)
location: region:128690-128890:-1
so has part: feature:128690-128890:-1:exon

WP_200606266.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:128690-128890:-1:exon

HIV01_RS00655
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00655
old locus tag: HIV01_000655
so part of: sequence
location: complement(128898..130958)
location: region:128898-130958:-1
so has part: feature:128898-130958:-1:exon
subclass of: SO_0000010

position:128898:-1
position: 128898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130958:-1
position: 130958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:128898-130958:-1:exon

HIV01_RS00655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00655
old locus tag: HIV01_000655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018974768.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0009267 - cellular response to starvation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbon starvation CstA family protein
translation: MKALSWLGWVALAVLAVFCIGTIALHRGETISAMWLVVASVSVFTIAYRFYGLYIARNALMVDATRATPAWRRNDGLDYVPTPRSVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGTLWILFGVVLAGAVQDMLVLFFSTRRDGRSLGEMIRAEMGPAAGVISMIGILMIMVILLAVLALVVVKALADSPWGTFTVAMTIPIAILMGLYLRYFRPGRIMEVSVIGFVLLILAIWSGGKVAASPDWAPMFHFTGTTLAWLMIGYGFIAAVLPVWLLLAPRDYLSTFLKIGTVLVLALAILIAMPDLQMPAMTTFVDGTGPVFSGKLFPFLFITIACGAVSGFHSLISSGTTPKMISNESQIPLIGYGGMLMEAFVAIMALIAACVLQPGVYFAMNAPAALIGTTAESAAAAISSWGFVLTPDILTATAKEIGETTILSRTGGAPTLAVGMAQILHGLIPGEGMMAFWYHYAILFEALFILTTVDAGTRVARFMIQELIGLAYAPFKQTESWAANVACTALAVALWGYFLYQGVVDPLGGINTLWPLFGIANQMLAGLALVFCSVVMVKMKREKFLWIPLIPTAWLLICTLTAGWQKLFHPEPKIGFIANARKFADAAARGEVLAPAKSMDDMSRVIFNNYLDAGLCALFVFVVLATVYFGFKAALAARRSNAPTAKESEYVAFDAVAR
SIO_010081: HIV01_RS00655
subclass of: SO_0000673
so part of: HIV01_RS00655
location: complement(128898..130958)
location: region:128898-130958:-1
so has part: feature:128898-130958:-1:exon

WP_200604375.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:128898-130958:-1:exon

HIV01_RS00660
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: corA
locus tag: HIV01_RS00660
old locus tag: HIV01_000660
so part of: sequence
location: complement(131072..132064)
location: region:131072-132064:-1
so has part: feature:131072-132064:-1:exon
subclass of: SO_0000010

position:131072:-1
position: 131072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:132064:-1
position: 132064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:131072-132064:-1:exon

HIV01_RS00660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: corA
locus tag: HIV01_RS00660
old locus tag: HIV01_000660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003478692.1
GO function: GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IEA]; GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO process: GO:0006824 - cobalt ion transport [Evidence IEA]; GO:0015693 - magnesium ion transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: magnesium/cobalt transporter CorA
translation: MKDPTLPQCVVNCAAYTRDGKRRDITLDQISDVLAVDDGTFVWVGLYEPGDDILEKLQEEFCLHDLAIEDARNAHQRPKIETYGNSLFIVVHTAQSVDSHIRFGESHMFVGERYLVTVRHGASTSYAPARARFERDPDDIAHGPAAALYVVLDQIVDNFLPIVQEFSQDLNELEQDIFADEFRKDTVKKLYELKRELTRLRMAVAPLQDILGQLARARGAMIDEESALYFRDVLDHVVRINESTDTLREMLTAAMSVNLSLVTIYQGEVVKRLAGWAALLAAPTLIASWYGMNFEAMPELHGRYSYAILIGVTVLVCLVLFGFLRRAKWL
SIO_010081: HIV01_RS00660
subclass of: SO_0000673
so part of: HIV01_RS00660
location: complement(131072..132064)
location: region:131072-132064:-1
so has part: feature:131072-132064:-1:exon

WP_200604376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:131072-132064:-1:exon

HIV01_RS00665
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00665
old locus tag: HIV01_000665
so part of: sequence
location: complement(132112..133308)
location: region:132112-133308:-1
so has part: feature:132112-133308:-1:exon
subclass of: SO_0000010

position:132112:-1
position: 132112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133308:-1
position: 133308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:132112-133308:-1:exon

HIV01_RS00665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00665
old locus tag: HIV01_000665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002810513.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4105 domain-containing protein
translation: MRDGLGWGRTKRITLGFLLALLALFATQAFAATPRIGVATMQPGEIFFERFGHNAIVVVDPDTGAATSYNFGFFDPSEPDFISRFVRGHMRYQLAALPFEQDLLQYRAEGRGVDVQWLDLSDAQANELAAALAENAKPENAHYAYQYFDDNCSTRVRDSLDRVLGGGLRRQIEGRSHGSTYRSEAVRLASPAWWMWLGFDVGLGPSSDKPLPVWNESYVPMRLAAALREVKNSEGRPLVKSEQPILPHRLPPEPQEPPPRWWPWCLVGLALGIAAAWAGRRQPRVLAAVALPFWTLSGVLGALMLFIWLGTQHRYGWANNNLLLLSPLAWLLLPGGWRVLRGRDPGPWFRRWLAVLAVAAVAALFLYWLPVYPQRNAHWVALMLPIQLGLWLAFRRPR
SIO_010081: HIV01_RS00665
subclass of: SO_0000673
so part of: HIV01_RS00665
location: complement(132112..133308)
location: region:132112-133308:-1
so has part: feature:132112-133308:-1:exon

WP_200604377.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:132112-133308:-1:exon

HIV01_RS00670
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00670
old locus tag: HIV01_000670
so part of: sequence
location: complement(133301..134185)
location: region:133301-134185:-1
so has part: feature:133301-134185:-1:exon
subclass of: SO_0000010

position:133301:-1
position: 133301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134185:-1
position: 134185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:133301-134185:-1:exon

HIV01_RS00670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00670
old locus tag: HIV01_000670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017357078.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transporter associated domain-containing protein
translation: MSEDDSSSFHAQETHERRHHEKPRSWLERISSALSGEPTTREDLVELLRDAQADGLIAADTLRMMEGAIAVSDLTVGDVMIPRSQMVSLPADGKFLDLMRQVVESGHSRFPVHGDDKDEILGVLLAKDLLRGVVADFGPGNVHELLRPAVLIPESKRLNVLLREFRQSRNHMAIVIDEHGGVAGLVTIEDVLEQIVGEIDDEHDDAEDPSALIAAQADGQFVVDALTPIADFNERFSADFDDDEYDTIGGLVTAAIGHLPEAGEELTLGRFVFRVSGADARRVHAFHVGVLSDA
SIO_010081: HIV01_RS00670
subclass of: SO_0000673
so part of: HIV01_RS00670
location: complement(133301..134185)
location: region:133301-134185:-1
so has part: feature:133301-134185:-1:exon

WP_200604378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:133301-134185:-1:exon

HIV01_RS00675
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: ybeY
locus tag: HIV01_RS00675
old locus tag: HIV01_000675
so part of: sequence
location: complement(134304..134786)
location: region:134304-134786:-1
so has part: feature:134304-134786:-1:exon
subclass of: SO_0000010

position:134304:-1
position: 134304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134786:-1
position: 134786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134304-134786:-1:exon

HIV01_RS00675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: ybeY
locus tag: HIV01_RS00675
old locus tag: HIV01_000675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010893423.1
GO function: GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
GO process: GO:0042254 - ribosome biogenesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: rRNA maturation RNase YbeY
translation: MTRGPIRLDVSITYAVPRTGIPAAVSFRKWVAAALESRIREADLAIRIVGTKEGRALNRHYRGKDYATNVLSFPAELPDGLPKGVKLPLLGDLVICAPVVAREAKEQKKPLAAHYAHLTVHGALHLLGWDHEDEKEAICMEQLEREILAGMGIEDPYRDE
SIO_010081: HIV01_RS00675
subclass of: SO_0000673
so part of: HIV01_RS00675
location: complement(134304..134786)
location: region:134304-134786:-1
so has part: feature:134304-134786:-1:exon

WP_200604379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:134304-134786:-1:exon

HIV01_RS00680
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00680
old locus tag: HIV01_000680
so part of: sequence
location: complement(134797..135798)
location: region:134797-135798:-1
so has part: feature:134797-135798:-1:exon
subclass of: SO_0000010

position:134797:-1
position: 134797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:135798:-1
position: 135798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134797-135798:-1:exon

HIV01_RS00680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00680
old locus tag: HIV01_000680
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016901621.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PhoH family protein
translation: MSSRTTSEFALEPAEAERLANLTGPFDGHLRMIELRLGVEIANRGNVFRVVGPPLAVNQAERLLRDLWRDAADETLTEPAIHLRLTEIDADGVANDDVEPQEVSIRVKRGTIRGRGANQAKYLHAIATHDINFGIGPAGTGKTFLAVASAVEALNEARVQRLILVRPAVEAGEKLGFLPGDLTQKVDPYLRPLYDALYEMLGVEKVVKLLEKNVIEIAPLAYMRGRTLNDAYVILDEAQNTSIEQMKMFLTRIGYGSTAVVTGDLTQIDLPKHQKSGLRDALDVLRGVNGISFTFFESRDVVRHPLVARIVNAYDARDARDADAGDARPGPPK
SIO_010081: HIV01_RS00680
subclass of: SO_0000673
so part of: HIV01_RS00680
location: complement(134797..135798)
location: region:134797-135798:-1
so has part: feature:134797-135798:-1:exon

WP_200604380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:134797-135798:-1:exon

HIV01_RS00685
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00685
old locus tag: HIV01_000685
so part of: sequence
location: complement(135921..136157)
location: region:135921-136157:-1
so has part: feature:135921-136157:-1:exon
subclass of: SO_0000010

position:135921:-1
position: 135921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:136157:-1
position: 136157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:135921-136157:-1:exon

HIV01_RS00685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00685
old locus tag: HIV01_000685
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPDPAPAPGLLQRCALGLWFCAIAALGLLRYAMRYLRDGEHAGDAVMWLWLVGSLVVGAIGVRLVYRALKSPSPPPRD
SIO_010081: HIV01_RS00685
subclass of: SO_0000673
so part of: HIV01_RS00685
location: complement(135921..136157)
location: region:135921-136157:-1
so has part: feature:135921-136157:-1:exon

WP_200604381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:135921-136157:-1:exon

HIV01_RS00690
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00690
old locus tag: HIV01_000690
so part of: sequence
location: 136308..137003
location: region:136308-137003:1
so has part: feature:136308-137003:1:exon
subclass of: SO_0000010

position:136308:1
position: 136308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:137003:1
position: 137003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136308-137003:1:exon

HIV01_RS00690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00690
old locus tag: HIV01_000690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007507440.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TetR/AcrR family transcriptional regulator
translation: MTESPKTRAAKASKSAKAPKGAVRRAPGRPGPDSPDLRERLLDGAIACFARQGIAATPLRAIATEAGVTPALLHYYFGDKAQLQEAAVAERVLPAFARLREPLMHAGDDIADLVAAFVKGIGLLVAEHPWLPALWVREVLCEGGALREVLFERIGPQMPLMMAARFAQAQQRGELNEDLDPRLLMVSLVGLTLFPAAGAPIWRRMFQADDLDFDALRRHTLALLDRGLGVG
SIO_010081: HIV01_RS00690
subclass of: SO_0000673
so part of: HIV01_RS00690
location: 136308..137003
location: region:136308-137003:1
so has part: feature:136308-137003:1:exon

WP_200604382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:136308-137003:1:exon

HIV01_RS00695
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00695
old locus tag: HIV01_000695
so part of: sequence
location: 137030..138010
location: region:137030-138010:1
so has part: feature:137030-138010:1:exon
subclass of: SO_0000010

position:137030:1
position: 137030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138010:1
position: 138010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:137030-138010:1:exon

HIV01_RS00695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00695
old locus tag: HIV01_000695
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019659037.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HlyD family efflux transporter periplasmic adaptor subunit
translation: MNTNKHSTTPGAWLGLACIVLLAGCRKEPPQALGTLEWDRIALPATAPERIVRIDVREGQRVKAGARLVQLEVTRTQAELAALQAQARQAGDVLAELEAGPRSEDIAQARANLAAAQAEAADASAFYARLQPLGRQQLVAASDVDRARAAAGNSQAQVRAAQAALLELERGTRIEQIAQGESALAAATAQAASQEVTLHKLDLIAPRAGVVDSLPYRLGDQAPVGAPLAIMLVGDAPYARVYVPEPIRADVRVGQSARVFIDGRDGSLEGRVRMIRNEASFTPYYALIGKDAARLSYLAEVELVGGKTTDLPAGLPVRVEFGAGTK
SIO_010081: HIV01_RS00695
subclass of: SO_0000673
so part of: HIV01_RS00695
location: 137030..138010
location: region:137030-138010:1
so has part: feature:137030-138010:1:exon

WP_200604383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137030-138010:1:exon

HIV01_RS00700
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00700
old locus tag: HIV01_000700
so part of: sequence
location: 138007..138966
location: region:138007-138966:1
so has part: feature:138007-138966:1:exon
subclass of: SO_0000010

position:138007:1
position: 138007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138966:1
position: 138966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138007-138966:1:exon

HIV01_RS00700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00700
old locus tag: HIV01_000700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015448470.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MNAGADELAIRARGLTKRFGSLAAVDHVDLSVPRANVYGFLGPNGSGKTTTIRMLCGLLTPSEGDVEVLGLRIPEQAEELRKRIGYMTQKFSLFDDLTVRENLEFLAAVQDIPRAKAAKRIDELVEQYHFADRQKQLAGTMSGGQKQRLALAGAVIQNPELLFLDEPTSAVDPESRRDFWEKLFDLADAGTTILVSTHYMDEAERCHRIAILDRGVLVADGTPDDLTHALAGRTVEVLAAQPRRAQQMLVNVPGVLSVAQIGNTLRVLNESNGEAAARLQKALTDAGLEATVAATHPNLEDVFVASTRGRAEKPQERAA
SIO_010081: HIV01_RS00700
subclass of: SO_0000673
so part of: HIV01_RS00700
location: 138007..138966
location: region:138007-138966:1
so has part: feature:138007-138966:1:exon

WP_200604384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:138007-138966:1:exon

HIV01_RS00705
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00705
old locus tag: HIV01_000705
so part of: sequence
location: 138963..140081
location: region:138963-140081:1
so has part: feature:138963-140081:1:exon
subclass of: SO_0000010

position:138963:1
position: 138963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:140081:1
position: 140081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138963-140081:1:exon

HIV01_RS00705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00705
old locus tag: HIV01_000705
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005408835.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MNLRRMFAIVQKELRQMRRDRITLAMIVGIPVMQLVLFGYAINLNLRGLETGIADQANTAGSRAVVMDMIATGVIDPTFSATSPQELMEQLRRGEISIGVVIPPDFERRRFEGREAVQVLVDGSDTVVQSAAVQLAQLPLSNTPTNNLAPTRGGTGQVAAGQIGVVSFYNPERRSAVNIVPGLIGIILTMTMVMFTGVAIVRERERGNMELLIATPLSSSELMIGKVLPYAGIGLIQTTLVILLGVWLFDVPIRGSLLDVYLASVLLIIANLTLGLLISTKAQSQFQAMQMTFFVFLPSILLSGFMFPFAGMPRIVQWLAEVLPLTHFLRLIRGVMLRGANLVELWPEVLALLVFITVMMTAAIMRFRKRLD
SIO_010081: HIV01_RS00705
subclass of: SO_0000673
so part of: HIV01_RS00705
location: 138963..140081
location: region:138963-140081:1
so has part: feature:138963-140081:1:exon

WP_200604385.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:138963-140081:1:exon

HIV01_RS00710
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00710
old locus tag: HIV01_000710
so part of: sequence
location: 140258..141922
location: region:140258-141922:1
so has part: feature:140258-141922:1:exon
subclass of: SO_0000010

position:140258:1
position: 140258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:141922:1
position: 141922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140258-141922:1:exon

HIV01_RS00710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00710
old locus tag: HIV01_000710
EC number: 3.5.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019185679.1
GO function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: amidohydrolase
translation: MQKLGLTISTLLLALAGSANAAEVTVLSAARIHTMASAQPRVQALAYDDSGRILALGDTAALIKRYPKARRIDAADATVIPGLIDAHAHVSGLGLTMLTADLVDSTSKDEVIKRLREFATKLPADAWLIGRGWDQNDWPEKRFPTAADLDAAFPDRPVWLERIDGHAGWANSAALRAVKRDLAGSWQPDGGRIERDAAGKPTGIFVDGAMALVDESRPPLDDATAERALVLGMQSAVEHGLTGVHDAGVSLAELRRYQHLADRNQMPLRITAMAAGDGDALAQICRDGLYRHASGRLQMRTVKLYADGALGSRGAAMVQDYSDDHGNRGLMLMSPDALLAAAIKAKGCGVQVATHAIGDRGNHEVLEAYAKALGADSAGDHRWRIEHAQVLTPQDLPRLAQLHVIASMQPTHATSDMPWAQDRVGPQRIVGAYAWRQLRDSGARLALGSDFPVESVDPRFGLYAAATRADSHGLPVGGWFPQEKLTAFEALRGFTLDAAYAGFAEAEVGSLEVGKRADFVVLKEDPLAIPPARLRELTVEATYVDGRAVYSAAK
SIO_010081: HIV01_RS00710
subclass of: SO_0000673
so part of: HIV01_RS00710
location: 140258..141922
location: region:140258-141922:1
so has part: feature:140258-141922:1:exon

WP_200604386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:140258-141922:1:exon

HIV01_RS00715
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: miaB
locus tag: HIV01_RS00715
old locus tag: HIV01_000715
so part of: sequence
location: complement(141985..143391)
location: region:141985-143391:-1
so has part: feature:141985-143391:-1:exon
subclass of: SO_0000010

position:141985:-1
position: 141985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143391:-1
position: 143391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:141985-143391:-1:exon

HIV01_RS00715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: miaB
locus tag: HIV01_RS00715
old locus tag: HIV01_000715
EC number: 2.8.4.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013534510.1
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
translation: MTDKTATSAPAPVTPGARKLYIQTHGCQMNEYDSAKMADVLAASDGMELTDNVEEADVILINTCSIREKAQEKVFSQLGRWKALKNGGRTVVIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIAAKRATGLPQVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEISRPFEDVLVEVADLASQGVREINLLGQNVNAYRGPIAPAEDGGEAEVADLGLLIRTIAEIEGIGRIRFTTSHPLEFSDSLIEAYRDVPKLANYLHLPVQAGSDRILAAMKRGYTSLEFKQKIRKLRAVRPDISVSSDFIVGFPGESGADFEKTMKLIEDVGFDQSFSFIYSRRPGTPAADLEDNVSSEEKHARLSRLQATINDNARKIGQTMVGSVQSVLVEGPSKKDPNELTGKTENMRSVNFPGHPRLVGQFVDVVITEALSNSLRGRVAMGELEVA
SIO_010081: HIV01_RS00715
subclass of: SO_0000673
so part of: HIV01_RS00715
location: complement(141985..143391)
location: region:141985-143391:-1
so has part: feature:141985-143391:-1:exon

WP_200604387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:141985-143391:-1:exon

HIV01_RS00720
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00720
old locus tag: HIV01_000720
pseudo: true
so part of: sequence
location: <143862..144473
location: region:143862-144473:1
so has part: feature:143862-144473:1:exon
subclass of: SO_0000010

position:143862:1
position: 143862
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:144473:1
position: 144473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143862-144473:1:exon

HIV01_RS00720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00720
old locus tag: HIV01_000720
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017171389.1
GO function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
SIO_010081: HIV01_RS00720
subclass of: SO_0000673
so part of: HIV01_RS00720
location: <143862..144473
location: region:143862-144473:1
so has part: feature:143862-144473:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:143862-144473:1:exon

HIV01_RS00725
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00725
old locus tag: HIV01_000725
so part of: sequence
location: 144662..145603
location: region:144662-145603:1
so has part: feature:144662-145603:1:exon
subclass of: SO_0000010

position:144662:1
position: 144662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:145603:1
position: 145603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144662-145603:1:exon

HIV01_RS00725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00725
old locus tag: HIV01_000725
EC number: 4.2.2.n1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006449545.1
GO function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MRGGSLLLGIALLLAAAPSVAGGLYRCDLPDGSRSYVSKKPAGARCTLINQSRGADRPAAAPAKAPAAMGSATPASPVAGSPVSIHAPAAPVAVPVAMNVSAAATPAPAAPAQASGTGPRVVRGQVYSYIQDGVRHYTSKAPRGVASASAVRTIRYSYIEACYACSARPGVNFGTVRLNTDAYRNEIAAAARQHGVDESIVRAIIHAESAYNPNALSRVGAQGLMQLMPATARRFGVSNAFDASQNIQGGVQYLAWLLKRFNNNLTLAAAGYNAGEGAVDKYKGVPPYNETQRYVVRVAQLAERYRGAGSVVR
SIO_010081: HIV01_RS00725
subclass of: SO_0000673
so part of: HIV01_RS00725
location: 144662..145603
location: region:144662-145603:1
so has part: feature:144662-145603:1:exon

WP_200604389.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:144662-145603:1:exon

HIV01_RS00730
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: petA
locus tag: HIV01_RS00730
old locus tag: HIV01_000730
so part of: sequence
location: 145781..146404
location: region:145781-146404:1
so has part: feature:145781-146404:1:exon
subclass of: SO_0000010

position:145781:1
position: 145781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:146404:1
position: 146404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:145781-146404:1:exon

HIV01_RS00730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: petA
locus tag: HIV01_RS00730
old locus tag: HIV01_000730
EC number: 7.1.1.8
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010486121.1
GO component: GO:0045275 - respiratory chain complex III [Evidence IEA]
GO function: GO:0009055 - electron transfer activity [Evidence IEA]; GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA]
GO process: GO:0009060 - aerobic respiration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ubiquinol-cytochrome c reductase iron-sulfur subunit
translation: MANQGVHDPVNQGRRRFLTATTAVVGAVGAGFVAVPFIKSWNPSARAKLAGAPISADISALEEGQRMILEWRGQPIWIVKRSKAILAALPTLDAHLRDPKSENKDQQPAYITGELRSIKPEVSVLVGLCTHLGCSPEMKAEIRPEPFDENWKGGYFCPCHKSRFDMAGRVFQGVPAPTNLVVPPHHYENDTTIVIGVDPSSGSKGAA
SIO_010081: HIV01_RS00730
subclass of: SO_0000673
so part of: HIV01_RS00730
location: 145781..146404
location: region:145781-146404:1
so has part: feature:145781-146404:1:exon

WP_200604390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:145781-146404:1:exon

HIV01_RS00735
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00735
old locus tag: HIV01_000735
so part of: sequence
location: 146408..147667
location: region:146408-147667:1
so has part: feature:146408-147667:1:exon
subclass of: SO_0000010

position:146408:1
position: 146408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:147667:1
position: 147667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:146408-147667:1:exon

HIV01_RS00735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00735
old locus tag: HIV01_000735
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007965674.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome bc complex cytochrome b subunit
translation: MSNIITRTALGAWDWVNARAPGMMPAYRKHMTEYYAPKNFNFWYYFGSLALLVLVNQIVTGIFLTMHFKPSAAEAFSSVEYIMRDVEWGWLIRYMHSTGASMFFIVVYLHMFRGLMYGSYQKPRELVWILGMLIYLVLMAEAFMGYVLPWGQMSFWGAKVIISLFGAIPVIGNGLTEWIMGDYLPGDATLNRFFALHVIALPLVLLLLVVLHLGALHEVGSNNPDGVDIKKGPKGNRWDAAKPLDGIPFHPYYTVKDLFGVGFFLIICAFVIFFAPAFGGWFLEHDNFTEANRLVTPEHIKPVWYYTPYYAMLRVIPHKLSGVIVMFAAIAVLFLVPWLDKSPVKSHKYRGWITKLMLGILAICFLWLGKIGAGPGTDPVETIIGRVLTFLYFVFFITMPIWTKLDRTKPVPERVTMHD
SIO_010081: HIV01_RS00735
subclass of: SO_0000673
so part of: HIV01_RS00735
location: 146408..147667
location: region:146408-147667:1
so has part: feature:146408-147667:1:exon

WP_200604391.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:146408-147667:1:exon

HIV01_RS00740
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00740
old locus tag: HIV01_000740
so part of: sequence
location: 147660..148445
location: region:147660-148445:1
so has part: feature:147660-148445:1:exon
subclass of: SO_0000010

position:147660:1
position: 147660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:148445:1
position: 148445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:147660-148445:1:exon

HIV01_RS00740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00740
old locus tag: HIV01_000740
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009598114.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome c1
translation: MTNQTDVRQPFQKTRIVKKLAIFAAGLLVSVSAYASSGGNLLQSGTDLGDQASLQRGAKLYMNYCSGCHSLKYLRYSRMAEDLGLSEDDVMANLNFTGAKVGEQIQVSLTPEHANQWFGKMPPDLSLISRVRGSDWIYTYLKSFYLDESRPLGWNNQLFPNASMPNPLWELQGLQHAEFGEADKKTGDRPVHGLKVTQAGQLDEQGFNQAVRDITTFLEYAGEPAALKRQNLGVWVILFLAMFTIIAYLLKIEYWRDVDKH
SIO_010081: HIV01_RS00740
subclass of: SO_0000673
so part of: HIV01_RS00740
location: 147660..148445
location: region:147660-148445:1
so has part: feature:147660-148445:1:exon

WP_200604392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:147660-148445:1:exon

HIV01_RS00745
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00745
old locus tag: HIV01_000745
so part of: sequence
location: 148595..149230
location: region:148595-149230:1
so has part: feature:148595-149230:1:exon
subclass of: SO_0000010

position:148595:1
position: 148595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:149230:1
position: 149230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:148595-149230:1:exon

HIV01_RS00745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00745
old locus tag: HIV01_000745
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003468210.1
GO function: GO:0005515 - protein binding [Evidence IEA]
GO process: GO:0006749 - glutathione metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glutathione S-transferase N-terminal domain-containing protein
translation: MAASPRMRNALTLFSSTDCVLCHRVRLVLAAKGVTYDLVPVDPQNPPEDLVDLNPYHSVPTLVERDLVLYAASVVSEYLDERYPHPPLMPVDPLSRARLRLAMLRLEHDWVPQVQAIQLGNKAQAEAGRKRLKELLTASVPLFKASKFFLNPEMSLADCAMAPIIWRLDALGVPMPKDGKAIEDYGNRIFRNPGFTRSLTEQERKLREMPA
SIO_010081: HIV01_RS00745
subclass of: SO_0000673
so part of: HIV01_RS00745
location: 148595..149230
location: region:148595-149230:1
so has part: feature:148595-149230:1:exon

WP_158733116.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:148595-149230:1:exon

HIV01_RS00750
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00750
old locus tag: HIV01_000750
so part of: sequence
location: 149358..149840
location: region:149358-149840:1
so has part: feature:149358-149840:1:exon
subclass of: SO_0000010

position:149358:1
position: 149358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:149840:1
position: 149840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:149358-149840:1:exon

HIV01_RS00750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00750
old locus tag: HIV01_000750
inference: COORDINATES: protein motif:HMM:NF008769.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ClpXP protease specificity-enhancing factor
translation: MTSHRPYLLRALYEWIADNGMTPHLLVDAARPSVQVPMHAVKDGKIVLNIAERAVSHLEMGNDAIRFSARFGGVSYPVSVPVQAVLAIYARETGQGMALPDDVHAAGDDSELDSDIDSAEEGVTTTLSAVPSDPAPEGDDDGPQSPTPTPRRGGHLRIVK
SIO_010081: HIV01_RS00750
subclass of: SO_0000673
so part of: HIV01_RS00750
location: 149358..149840
location: region:149358-149840:1
so has part: feature:149358-149840:1:exon

WP_280633576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:149358-149840:1:exon

HIV01_RS00755
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00755
old locus tag: HIV01_000755
so part of: sequence
location: complement(149887..150210)
location: region:149887-150210:-1
so has part: feature:149887-150210:-1:exon
subclass of: SO_0000010

position:149887:-1
position: 149887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:150210:-1
position: 150210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:149887-150210:-1:exon

HIV01_RS00755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00755
old locus tag: HIV01_000755
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010382418.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3301 domain-containing protein
translation: MPTLLILMIAAAMVFAFWSAGRAAAERAEAVGRDACRAAGVQWLDQSVHATGIRLCRHDNGWLGWERTFRFDYSIDGEDRHVGRMVLRGDRLIAFSGPVTRAPAQLH
SIO_010081: HIV01_RS00755
subclass of: SO_0000673
so part of: HIV01_RS00755
location: complement(149887..150210)
location: region:149887-150210:-1
so has part: feature:149887-150210:-1:exon

WP_200604394.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:149887-150210:-1:exon

HIV01_RS00760
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00760
old locus tag: HIV01_000760
so part of: sequence
location: 150316..151128
location: region:150316-151128:1
so has part: feature:150316-151128:1:exon
subclass of: SO_0000010

position:150316:1
position: 150316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:151128:1
position: 151128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:150316-151128:1:exon

HIV01_RS00760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00760
old locus tag: HIV01_000760
inference: COORDINATES: protein motif:HMM:NF012708.2
GO function: GO:0051219 - phosphoprotein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FHA domain-containing protein
translation: MKLVFPGGEHPQVLLGHGINRVGSDPHSTIVIDHPGVLPQHCQLHVTAQGVMLDVPPGTAVTVNGRKVAGLITLRPGDSVGFDQVQAKLAALGPAPVVARQAPPTGPDLMPANDDPGVTAVRPVVPRFFLRGVSAEVSGRSDPLVGVITVGRSSESTMRFDSPGLSRNHARLMPTESGVQVEDLGSSNGSFINGKRVLRGEARVGDEIAFDTLRFRLAATAKSEPVQVVAAPRPAPRRRPVWPWLLAVALLASAAAGAYVVMAPGGLQML
SIO_010081: HIV01_RS00760
subclass of: SO_0000673
so part of: HIV01_RS00760
location: 150316..151128
location: region:150316-151128:1
so has part: feature:150316-151128:1:exon

WP_200604395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:150316-151128:1:exon

HIV01_RS00765
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: nadC
locus tag: HIV01_RS00765
old locus tag: HIV01_000765
so part of: sequence
location: complement(151152..152021)
location: region:151152-152021:-1
so has part: feature:151152-152021:-1:exon
subclass of: SO_0000010

position:151152:-1
position: 151152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152021:-1
position: 152021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:151152-152021:-1:exon

HIV01_RS00765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: nadC
locus tag: HIV01_RS00765
old locus tag: HIV01_000765
EC number: 2.4.2.19
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011347931.1
GO function: GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carboxylating nicotinate-nucleotide diphosphorylase
translation: MTAPFAPPPAEVIAADVARALAEDLGSGDVTASLLPDAADSAYLLCKEDAVVCGRPWFDACHRALDPDVRIDWRVAEGDRVAKGTVLALLQGRSRALVSAERASLNFLQTLSGTATTTAAYVDAVRGTGAKILDTRKTIPGLRQAQKYAVRVGGGVNHRIGLFDAVMLKENHVRAAGSLTAAIRAARQMHPQLPLIVEVETIAQLEEALHEGCDRILIDDFDAATRREAVRIAANPPSNRRIPLEVSGGVDMQTLRSIAEDGVDCISIGGLTKHVRAIDLSLKLGPPPA
SIO_010081: HIV01_RS00765
subclass of: SO_0000673
so part of: HIV01_RS00765
location: complement(151152..152021)
location: region:151152-152021:-1
so has part: feature:151152-152021:-1:exon

WP_200604396.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:151152-152021:-1:exon

HIV01_RS00770
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00770
old locus tag: HIV01_000770
so part of: sequence
location: complement(152018..152287)
location: region:152018-152287:-1
so has part: feature:152018-152287:-1:exon
subclass of: SO_0000010

position:152018:-1
position: 152018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152287:-1
position: 152287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:152018-152287:-1:exon

HIV01_RS00770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00770
old locus tag: HIV01_000770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005415953.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Trm112 family protein
translation: MDRKLLDLLVCPTTRQPLQLLDSRSLQALNAAIQAGGIVRGDGGAQAEPVKEALVTRDRKIAYRIDDGIPVLLAEEAIATAQVDAFPSA
SIO_010081: HIV01_RS00770
subclass of: SO_0000673
so part of: HIV01_RS00770
location: complement(152018..152287)
location: region:152018-152287:-1
so has part: feature:152018-152287:-1:exon

WP_200604397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:152018-152287:-1:exon

HIV01_RS00775
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: purE
locus tag: HIV01_RS00775
old locus tag: HIV01_000775
so part of: sequence
location: 152352..152855
location: region:152352-152855:1
so has part: feature:152352-152855:1:exon
subclass of: SO_0000010

position:152352:1
position: 152352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:152855:1
position: 152855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:152352-152855:1:exon

HIV01_RS00775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: purE
locus tag: HIV01_RS00775
old locus tag: HIV01_000775
EC number: 4.1.1.21
EC number: 5.4.99.18
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008570985.1
GO component: GO:0009320 - phosphoribosylaminoimidazole carboxylase complex [Evidence IEA]
GO function: GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
GO process: GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 5-(carboxyamino)imidazole ribonucleotide mutase
translation: MSESSVAPLVGIVMGSRSDWETMQHAAAKLEALGVPHEIRVVSAHRTPDVLFDYAATAQSRGLRAIIAGAGGAAHLPGMLAAKTAVPVLGVPVQSKALNGMDSLLSIVQMPAGIPVATFAIGNAGAANAALFAAAMLSAEHPAIGAALDTFRTRQTDDVLANDDPRK
SIO_010081: HIV01_RS00775
subclass of: SO_0000673
so part of: HIV01_RS00775
location: 152352..152855
location: region:152352-152855:1
so has part: feature:152352-152855:1:exon

WP_200604398.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:152352-152855:1:exon

HIV01_RS00780
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00780
old locus tag: HIV01_000780
so part of: sequence
location: 152852..153997
location: region:152852-153997:1
so has part: feature:152852-153997:1:exon
subclass of: SO_0000010

position:152852:1
position: 152852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:153997:1
position: 153997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:152852-153997:1:exon

HIV01_RS00780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00780
old locus tag: HIV01_000780
EC number: 6.3.4.18
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003485593.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
GO process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 5-(carboxyamino)imidazole ribonucleotide synthase
translation: MTTVGILGGGQLARMLALSGAPLGLRFLVMDNVADACAGQFAPMVVGDYRDETTLAEFASRVDVATFDFENVPSESAQWLSERVQVFPNPRALATAQDRLAEKTLFQKLGIPVPPFAAIDTREQLDAAIAQIGTPCILKTRRLGYDGKGQFRIKTTADADAAWDALGAQASKVGLILEGFVHFERELSVVAVRGRDGEFRTWPLTENWHVDGVLSASLAPARVDSALAQVAYEHARKLGEALDYVGVFALELFCRDGELLANELAPRVHNSGHWTIEGSETSQFQNHLRAVLGLPLGDTRMVGLACMLNWIGEMPSATPVLAEPGGHWHDYGKLPRAGRKVGHATVRADSAQALATSLQRVGEGLGRQAQVDPVIAALARS
SIO_010081: HIV01_RS00780
subclass of: SO_0000673
so part of: HIV01_RS00780
location: 152852..153997
location: region:152852-153997:1
so has part: feature:152852-153997:1:exon

WP_200604399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:152852-153997:1:exon

HIV01_RS00785
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00785
old locus tag: HIV01_000785
so part of: sequence
location: complement(154077..154655)
location: region:154077-154655:-1
so has part: feature:154077-154655:-1:exon
subclass of: SO_0000010

position:154077:-1
position: 154077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:154655:-1
position: 154655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154077-154655:-1:exon

HIV01_RS00785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00785
old locus tag: HIV01_000785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009598068.1
GO function: GO:0046872 - metal ion binding [Evidence IEA]; GO:0004784 - superoxide dismutase activity [Evidence IEA]
GO process: GO:0006801 - superoxide metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fe-Mn family superoxide dismutase
translation: MAIELPALPYDRTALEPHISGETIDFHYGKHHKTYVDNLNKMIEGTEFAGMALEEIIRKSQGGMFNNAAQIWNHTFYWNCLAPNGGGEPGGKLAELINKAFGDFAKFKEEFTKVTVGTFGSGWGWLVQRPDGSLALVSTSNAATPLTGDDTPLLTCDVWEHAYYIDYRNARPKYVEAFWNLVNWDFVAANLK
SIO_010081: HIV01_RS00785
subclass of: SO_0000673
so part of: HIV01_RS00785
location: complement(154077..154655)
location: region:154077-154655:-1
so has part: feature:154077-154655:-1:exon

WP_200604400.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:154077-154655:-1:exon

HIV01_RS00790
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: grxD
locus tag: HIV01_RS00790
old locus tag: HIV01_000790
so part of: sequence
location: 154815..155135
location: region:154815-155135:1
so has part: feature:154815-155135:1:exon
subclass of: SO_0000010

position:154815:1
position: 154815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:155135:1
position: 155135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154815-155135:1:exon

HIV01_RS00790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: grxD
locus tag: HIV01_RS00790
old locus tag: HIV01_000790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019397742.1
GO function: GO:0009055 - electron transfer activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Grx4 family monothiol glutaredoxin
translation: MSVMERIQAEVESHPIVLFMKGTAQFPMCGFSSRAVQALKAAGADELHTVNVLEDPEIRANLPRYSNWPTFPQLFIHGELIGGCDITMELFESGELARMISETHSQ
SIO_010081: HIV01_RS00790
subclass of: SO_0000673
so part of: HIV01_RS00790
location: 154815..155135
location: region:154815-155135:1
so has part: feature:154815-155135:1:exon

WP_200604401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:154815-155135:1:exon

HIV01_RS00795
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00795
old locus tag: HIV01_000795
so part of: sequence
location: 155144..155914
location: region:155144-155914:1
so has part: feature:155144-155914:1:exon
subclass of: SO_0000010

position:155144:1
position: 155144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:155914:1
position: 155914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155144-155914:1:exon

HIV01_RS00795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00795
old locus tag: HIV01_000795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002810181.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SDR family NAD(P)-dependent oxidoreductase
translation: MDRALDGRPLEGRVILVTGAHGGLGQAAALACARAGATVVLLGRKLPKLNRVYDALTQVGPEPMLYPLDLEGASPDDYAELAQRLESEVGRLDGVLHCAAEFTGLTPLAQTDPAVFARAIHVNLTAPWWLTQACLPLLGKAPDAAVVFVLDDPARIGKAYWGGYGVAKQGLAGLVGTLHGELANTPVRVAGLQPGPMRTPLRAKAYVEENDRGAVEPSAYAGACVTLLSQAGAVHRGQVWNPPAATALPTLPTLGL
SIO_010081: HIV01_RS00795
subclass of: SO_0000673
so part of: HIV01_RS00795
location: 155144..155914
location: region:155144-155914:1
so has part: feature:155144-155914:1:exon

WP_245156878.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:155144-155914:1:exon

HIV01_RS00800
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00800
old locus tag: HIV01_000800
so part of: sequence
location: 155939..156535
location: region:155939-156535:1
so has part: feature:155939-156535:1:exon
subclass of: SO_0000010

position:155939:1
position: 155939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:156535:1
position: 156535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155939-156535:1:exon

HIV01_RS00800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00800
old locus tag: HIV01_000800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010895080.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YhgN family NAAT transporter
translation: MTIASAALLLFLILDPLGNVPVFLSLLRGLPPKRQRIVLARELLIALAVLMMFLWGGKYALELMHLRQESVSIAGGIVLFLIGIRMIFPPPEGLMGEIPDGEPFIVPMAIPLVAGPSGMAAVMLMGSNEPTRLGEWSLALLIAWGATAAILFSATLLYKLMGIRALTAIERLMGMLLVAISVQMFLDGLGTYLQIAPP
SIO_010081: HIV01_RS00800
subclass of: SO_0000673
so part of: HIV01_RS00800
location: 155939..156535
location: region:155939-156535:1
so has part: feature:155939-156535:1:exon

WP_200604402.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:155939-156535:1:exon

HIV01_RS00805
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00805
old locus tag: HIV01_000805
so part of: sequence
location: 156877..160071
location: region:156877-160071:1
so has part: feature:156877-160071:1:exon
subclass of: SO_0000010

position:156877:1
position: 156877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:160071:1
position: 160071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:156877-160071:1:exon

HIV01_RS00805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00805
old locus tag: HIV01_000805
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017167812.1
GO function: GO:0015267 - channel activity [Evidence IEA]
GO process: GO:0015891 - siderophore transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TonB-dependent receptor
translation: MTHPNRVRMSKLALGLFAALATSSVFAQATSAGIGGRVVAADGQPVAGAEVVITHTESGTVSRATTGADGRYNARGLRVGGPYTVTINKAGAGTTSQDGVYLNLDKVNQVDLALNNEVTTLESVQAISYGGSEVFSANKMGAGSQITREQLETMPSINRNLQDFARLDPRIVQSDKARNEITVGGQNPRYNVIRVDGISSADSFGLQGNGLPTPRQPFSMDTIDEIAVDVANYDVTISGGTGGVINAVTKSGTNEFHGSVYGIYRDNDWSGKNQNDIRPQLFDNEQTYGMTFGGPLIKDKLFFFANYENYTGKDLFTGNSGFGPVGSGESNIVGITQAQIDQVIALSNAKGFNPGTLTKPSLDTESEEYGLKIDWNITDAQRASFRYGKTEQSTPFLQGFNNTSLALNTYHYVQDFELETYSAQLFSDWTDVFSTEAKVSYRDYTAVRNPLTDLPAIAVRIGSNTLNFGTEENTHANVLGTKTWNGFFAGNLFLGDHTVKFGADYESNEVYNLFGRRVNGVYTFNSIADYAANRSSRYQLFYPQGGDLDAMAAVFTQENLGLFVQDSWAVNSNLTLTYGLRFDHSIVDDKPVFNAAASSLFGVRNDNTIDGADLWSPRFGFNYTMDTERPSQVRGGVGLFKGAAATVWLANPFANNGVTYTDYFDSNGTNVFSADPRGQLAVAQTGGTPGQQSVDFIGSDVVQPSVWKSNLAFDTELPWWGVVASAELVLTSVKDGIYYQQLNLGNSTRTGLDGRALFWNAAGYNPANWNRDGVSSGGATARANRATAFNDAIIAKRTGKGESQQLTIGLNKPFNDGDWAWAASYTYTNANEVSPLTSSTSSSNLGNVSVFQSNEEVSATSSYEIKNRFLATAQWKHAFFGSNNTIVSLVYEGRSGRPYSYTFDNDANGDGRVNDLLYIPAGLDDVIIGQGATKAAEEATFWALINNNEYLNSHRGQVAERNAETSDWVNQFDLHIAQEFPGFMDGHKAEISIDVLNIGNLLNKDWGRVEEMAFPGMRGVVEYGGVDAATGKYIYRVNTPDALTIYDDKGISRWAAQVSLRYKF
SIO_010081: HIV01_RS00805
subclass of: SO_0000673
so part of: HIV01_RS00805
location: 156877..160071
location: region:156877-160071:1
so has part: feature:156877-160071:1:exon

WP_200604403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:156877-160071:1:exon

HIV01_RS00810
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: ppnN
locus tag: HIV01_RS00810
old locus tag: HIV01_000810
so part of: sequence
location: 160184..161563
location: region:160184-161563:1
so has part: feature:160184-161563:1:exon
subclass of: SO_0000010

position:160184:1
position: 160184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:161563:1
position: 161563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160184-161563:1:exon

HIV01_RS00810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: ppnN
locus tag: HIV01_RS00810
old locus tag: HIV01_000810
EC number: 3.2.2.10
EC number: 3.2.2.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013534528.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nucleotide 5'-monophosphate nucleosidase PpnN
translation: MSATIETTLPTVNARIYPKGGLDVLSRDEVARLRDVSTGMHDLLRRCALAVLTSGSASDDPRAARELYPEFDIQVHQQDRGVRIDLTHAPAMAFVDGEIIRGVAELLFAVVRDLAYTVMELGPDSNKDLETSSGITDSVFGLLRNARILHPTEPNLVVCWGGHSISRDEYVYTKQVGYELGLRGLDICTGCGPGAMKGPMKGATIAHAKQRRGRTRYIGITEPGIIAAESPNPIVNHLVIMPDIEKRLEAFVRLGHGIIVFPGGVGTAEEILYLLGILLREENAHLPFPLIFTGPTASAPYFEQIDKFIRLTLGEEATKRYEIIVGEPDKVAKRMSAGIRKVREHRIAQKDSFFFNWSVDIPLAFQRPFVPSHEAMASLDLHHGRKPHELAADLRRAFSGIVAGNVKEDGMRRIEAHGPFEIHGDADMMQSLDALLRAFVEQRRMKIAGEYKPCYRVVA
SIO_010081: HIV01_RS00810
subclass of: SO_0000673
so part of: HIV01_RS00810
location: 160184..161563
location: region:160184-161563:1
so has part: feature:160184-161563:1:exon

WP_200604404.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:160184-161563:1:exon

HIV01_RS00815
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00815
old locus tag: HIV01_000815
so part of: sequence
location: complement(161613..162587)
location: region:161613-162587:-1
so has part: feature:161613-162587:-1:exon
subclass of: SO_0000010

position:161613:-1
position: 161613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:162587:-1
position: 162587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161613-162587:-1:exon

HIV01_RS00815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00815
old locus tag: HIV01_000815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003468241.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histidine kinase
translation: MLIWVVLAGECVATVLALAPGEGRGNRLIYFGLASLVVQWIALLSLGTLYLLRNLLSGLRPQILAWVTLALLLSSTWVVTGLAWLALGTDWPLAEGGWPALTLQLTGIALAVGLLGLAAFQNHWRGILHAVRAKQSELLALQARIRPHFLFNTLNTGAALVHRKPEEVERLLLDLADLFRAALAGPHDISLEDELALARRYLEIEQLRFGERLQIDWQLPREIPAVTVPALSIQPLVENAIRHGIERRAEGGQIEIAVTTTPETVIVRIINPLASRAGQNPGHHVGLNASQVRIEALTGGRGSVITQQEGKRFIATVRLPVSPG
SIO_010081: HIV01_RS00815
subclass of: SO_0000673
so part of: HIV01_RS00815
location: complement(161613..162587)
location: region:161613-162587:-1
so has part: feature:161613-162587:-1:exon

WP_245156879.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:161613-162587:-1:exon

HIV01_RS00820
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00820
old locus tag: HIV01_000820
so part of: sequence
location: 162807..163385
location: region:162807-163385:1
so has part: feature:162807-163385:1:exon
subclass of: SO_0000010

position:162807:1
position: 162807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163385:1
position: 163385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162807-163385:1:exon

HIV01_RS00820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00820
old locus tag: HIV01_000820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011051757.1
GO component: GO:0015627 - type II protein secretion system complex [Evidence IEA]
GO process: GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GspH/FimT family pseudopilin
translation: MSRFAGRKRANSLNATSSRGFTLLELMVTISVLGILAVIAFPAFTSITNSNRLTSAANQFAVDLQFARSEAMRRNVRVEVCASADAATCSGDDWQNWIVRDAGAVLRVGNAKAPVQMVASAALVADDNKITFRPEGLARGDDDLVQDVSLQPCIATDNPPENMRVVALGSGSRVSVNRHDGGGACEAVDDGD
SIO_010081: HIV01_RS00820
subclass of: SO_0000673
so part of: HIV01_RS00820
location: 162807..163385
location: region:162807-163385:1
so has part: feature:162807-163385:1:exon

WP_200604405.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:162807-163385:1:exon

HIV01_RS00825
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: pilV
locus tag: HIV01_RS00825
old locus tag: HIV01_000825
so part of: sequence
location: 163398..163877
location: region:163398-163877:1
so has part: feature:163398-163877:1:exon
subclass of: SO_0000010

position:163398:1
position: 163398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163877:1
position: 163877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163398-163877:1:exon

HIV01_RS00825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: pilV
locus tag: HIV01_RS00825
old locus tag: HIV01_000825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009597944.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV pilus modification protein PilV
translation: MKSVSRHLANDRIGGAGQRGVGLLEVLIAVLVMAVGMLGIAALQAVALRNSQSSFERSNAVVQSYAILDAMRANAAAARIGQYDRGMICELPDEGDLVETDLRNWITSLHQSLGDDACGQTDCDSVSCKVTVQWNDSRSQDAGDDGEDKTQTVTVETRI
SIO_010081: HIV01_RS00825
subclass of: SO_0000673
so part of: HIV01_RS00825
location: 163398..163877
location: region:163398-163877:1
so has part: feature:163398-163877:1:exon

WP_200604406.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:163398-163877:1:exon

HIV01_RS00830
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00830
old locus tag: HIV01_000830
so part of: sequence
location: 163874..164938
location: region:163874-164938:1
so has part: feature:163874-164938:1:exon
subclass of: SO_0000010

position:163874:1
position: 163874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:164938:1
position: 164938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163874-164938:1:exon

HIV01_RS00830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00830
old locus tag: HIV01_000830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010375834.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: prepilin-type N-terminal cleavage/methylation domain-containing protein
translation: MTARRSLRGTRGPVLASGFSLIELMISLVLGLLVVAAAGTLFMANRQTYTATESLGRLQENARVAFELMSRDVREAGGNFCGAPLASTVNVLVPGGAWYTDFSGGVRGYPGDTAFPDSAFGTGAAQRTAGTDAIELKSAFADPVTIESDNPTTGTITLNSADHGFAVGDIAVACDSNHAAIFQVTTAGAETIEHATGSGTPGNCTQGLGMPLSCDGAAGTGYQFGCVFGGVPASGVDCTQPGSKWTAVVTKIRAVRWYVATNDRGGKSLYQSVLHGSAAALETNEIVEGVNDMTLEYLRQGDAAYQGTVAAADWPSIVAMRVTLDLVGQDRVGTDGNPLQRTLAHVITIRNRLP
SIO_010081: HIV01_RS00830
subclass of: SO_0000673
so part of: HIV01_RS00830
location: 163874..164938
location: region:163874-164938:1
so has part: feature:163874-164938:1:exon

WP_200604407.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:163874-164938:1:exon

HIV01_RS00835
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00835
old locus tag: HIV01_000835
so part of: sequence
location: 164935..165489
location: region:164935-165489:1
so has part: feature:164935-165489:1:exon
subclass of: SO_0000010

position:164935:1
position: 164935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:165489:1
position: 165489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:164935-165489:1:exon

HIV01_RS00835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00835
old locus tag: HIV01_000835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011051754.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PilX N-terminal domain-containing pilus assembly protein
translation: MRHSFPTRQKGVALFVVLILLVILTLLGLAAMRGTLLEERMSANLLDRGMAFQATEAALREGEEYAESLAVSSFPASGCADGLCSRPDPAVATDNQRWQADGFWDDDSGFWREATVDVGDLTAKPRFIVELLDTTLPASGQCSTSIDVSPDASCSGNERRYRVTAYSHADGRAEVMLQSTYAVP
SIO_010081: HIV01_RS00835
subclass of: SO_0000673
so part of: HIV01_RS00835
location: 164935..165489
location: region:164935-165489:1
so has part: feature:164935-165489:1:exon

WP_200604408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:164935-165489:1:exon

HIV01_RS18055
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS18055
so part of: sequence
location: 165503..169327
location: region:165503-169327:1
so has part: feature:165503-169327:1:exon
subclass of: SO_0000010

position:165503:1
position: 165503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:169327:1
position: 169327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165503-169327:1:exon

HIV01_RS18055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS18055
inference: COORDINATES: protein motif:HMM:NF017388.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PilC/PilY family type IV pilus protein
translation: MTIKTMDGTSKRGPGRVVSARRPGTLRRLTPFFVTLCATLVAAPGHAVDIPVLPMQTGVAYPAANVMLILDDSLSMEGDTLPYKLSIDTGASEDEAYTANSLAYNPATTYSAWLGSNSEPVTGGTTFDTAYSDASLLSGSANLANTTQTFYIPKPTATNLTVSSSYYRYQILSGTGRVVQAEWLSAAPTTPAVALTSDSDLRANRGAWALKGTSGADTAADAPVAARFSFTIPEVEGKTVSLTVTTSGNDADAHLYVRHSNDGSPSTNQGNNNNSWRCKSETTGSSAETCTASTAQPGVWNLALKARNNSNSDSFTGVSFTVSYTVTENNTLGCTAASTSGNAWRNCTRTTPQYKADGSKRTEQAEKDNYATWYSYHRTRMKSAKNGASTAFAGLQQNIRVGLIGLYPPGDNKYQGYKIPVTHDSGLFKDTNRSQWFTKLHEMDGKNTTPLRKALNTVGKYFSETADDGPYGPATGSGATKVQLACRQNFAILTTDGYWNNFNGTDDPDNNYTHISGDEEDGVTITGPNNGDFKYTKQAPYWYNPAGDADDGLDTTTLADVAMHYWKTDLRTLENKVPSSTANPAFWQHMVTFGISLGARGLMTDAQIKAAKEKTAGAYWVQPKHATNGDDNPQNIDDLQHAAVNSRGTFVSAQDPEQFAKALKSALATVAERLGSASNVSTNTSSLQGTDGRVYQASYTSGKWAGELAAHSVSSAGIDLTPAWIASEHVPAVASRNIKTWEGSEGVAFPTTDQVTALGAQVTSIFGSTSTVTGAQIASYIRGDRSKETNQTNGVMRERSTVLGDIVNSSPNYVADSKTIFVGANDGMLHAFKTVTESSGPVAGTELFAYVPRGVSMTDLAQLANPLYVHKYFVDGPITVSNTTQTPGKNYLVGALGRGGKGVYGLDVTTPGSFDDDDVLWDLTGSAAPTNMGLVLGEPLMVKLNDASKTKAVVVSNGINSSTGTASLFVINVATGDVIREIDTGVTGDNGLSAPRGADLDGNGTVDYVYAGDLQGNVWKFDLRSSASASWSKSKLFTAMDDDDKAQPITAGVALARNPLTGQIWIFVGTGSFLTENDRDSNDVQSMYGIIDDGGSYDRGDLAEREIMVVTTKDGRKVRAFQQHIESLESGNKGWYIDLDDPEPGERIVSNPRVSGTALITASLIPPDDETTTDCESGGSGYINALDAFTGTSLSESYFDSNGNGDSSDDTVADADGNQLPIGSVDLGVGMPTLPTVIDSLLVVGGSKGTLGSVTVNPQGGQPRRVSWREIQRN
SIO_010081: HIV01_RS18055
subclass of: SO_0000673
so part of: HIV01_RS18055
location: 165503..169327
location: region:165503-169327:1
so has part: feature:165503-169327:1:exon

WP_245156880.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:165503-169327:1:exon

HIV01_RS00845
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00845
old locus tag: HIV01_000845
so part of: sequence
location: 169334..169780
location: region:169334-169780:1
so has part: feature:169334-169780:1:exon
subclass of: SO_0000010

position:169334:1
position: 169334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:169780:1
position: 169780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:169334-169780:1:exon

HIV01_RS00845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00845
old locus tag: HIV01_000845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019397731.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV pilin protein
translation: MPSSKNAVLPARTRQRGAPGKAAGFTLIELMIVVLVIAVLMAIAYASYQGVVVKSRRVAAEGCLMQHAQFMERYYTTNFTYVGGAAPACDADVANFYTVGFVADPTRAAFTLQAAPKSNQRDGKCGTLTLDEKGQRGEGGTGSVDDCW
SIO_010081: HIV01_RS00845
subclass of: SO_0000673
so part of: HIV01_RS00845
location: 169334..169780
location: region:169334-169780:1
so has part: feature:169334-169780:1:exon

WP_200606274.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:169334-169780:1:exon

HIV01_RS00850
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00850
old locus tag: HIV01_000850
so part of: sequence
location: 169844..170032
location: region:169844-170032:1
so has part: feature:169844-170032:1:exon
subclass of: SO_0000010

position:169844:1
position: 169844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:170032:1
position: 170032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:169844-170032:1:exon

HIV01_RS00850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00850
old locus tag: HIV01_000850
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPASMRAFFLGDRAGTRQKKKTCDSVAGLFYYLAPEVGLDAGATVAGGVGLTVMWRASGMNV
SIO_010081: HIV01_RS00850
subclass of: SO_0000673
so part of: HIV01_RS00850
location: 169844..170032
location: region:169844-170032:1
so has part: feature:169844-170032:1:exon

WP_200604409.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:169844-170032:1:exon

HIV01_RS00855
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00855
old locus tag: HIV01_000855
so part of: sequence
location: complement(170029..170829)
location: region:170029-170829:-1
so has part: feature:170029-170829:-1:exon
subclass of: SO_0000010

position:170029:-1
position: 170029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170829:-1
position: 170829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:170029-170829:-1:exon

HIV01_RS00855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00855
old locus tag: HIV01_000855
inference: COORDINATES: protein motif:HMM:NF016908.2
GO function: GO:0016740 - transferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FkbM family methyltransferase
translation: MEQAARIDIGGRGYTLVSDDDYLAAHGGVFEPDTVKLFRHLASGSNVALDIGANVGCTALLLSQIAKQVHAFEPSPSTHHWLHQNTRQAPNVTTHNLGLGRAAAVSELTFAPNNRSGGFVSDQTKATEGHTVETIQINRLDDVVRAQQIGPVDFIKMDVEGYELEVIKGAPETLWRYRPVIALEMNHWCLNAFHRVSVPDFLDYLTNAFPYVYAVHQGRRMDVREPGHRYDVMRLHILGGQYNGLVCAYDAPRLNSFLAAYQPGLA
SIO_010081: HIV01_RS00855
subclass of: SO_0000673
so part of: HIV01_RS00855
location: complement(170029..170829)
location: region:170029-170829:-1
so has part: feature:170029-170829:-1:exon

WP_200604410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:170029-170829:-1:exon

HIV01_RS00860
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00860
old locus tag: HIV01_000860
so part of: sequence
location: complement(171224..171300)
location: region:171224-171300:-1
so has part: feature:171224-171300:-1:exon
subclass of: SO_0000663

position:171224:-1
position: 171224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171300:-1
position: 171300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171224-171300:-1:exon

HIV01_RS00860
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS00860
old locus tag: HIV01_000860
product: tRNA-Asn
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(171264..171266),aa:Asn,seq:gtt)
SIO_010081: HIV01_RS00860
subclass of: SO_0000673
so part of: HIV01_RS00860
location: complement(171224..171300)
location: region:171224-171300:-1
so has part: feature:171224-171300:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:171224-171300:-1:exon

HIV01_RS00865
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00865
old locus tag: HIV01_000865
so part of: sequence
location: complement(171354..171845)
location: region:171354-171845:-1
so has part: feature:171354-171845:-1:exon
subclass of: SO_0000010

position:171354:-1
position: 171354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171845:-1
position: 171845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171354-171845:-1:exon

HIV01_RS00865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00865
old locus tag: HIV01_000865
inference: COORDINATES: protein motif:HMM:NF023444.2
GO component: GO:0015627 - type II protein secretion system complex [Evidence IEA]
GO process: GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GspH/FimT family pseudopilin
translation: MQGLTLIELLVAVAILGVTLGLVAPAFRQMTLAVRANGVFHELTASLAMARTHSLMRNAPVVVCPSQDGVTCRHDSVWDQGWIAFTARDGRLVRASSGGRGLVITSNRPRLRFQAGGFSEGSNLTLYVYADADGPLIGVIKVSQAGRIRSERTPMATISSNSP
SIO_010081: HIV01_RS00865
subclass of: SO_0000673
so part of: HIV01_RS00865
location: complement(171354..171845)
location: region:171354-171845:-1
so has part: feature:171354-171845:-1:exon

WP_200604411.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:171354-171845:-1:exon

HIV01_RS00870
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: uvrB
locus tag: HIV01_RS00870
old locus tag: HIV01_000870
so part of: sequence
location: 172012..174045
location: region:172012-174045:1
so has part: feature:172012-174045:1:exon
subclass of: SO_0000010

position:172012:1
position: 172012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:174045:1
position: 174045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172012-174045:1:exon

HIV01_RS00870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: uvrB
locus tag: HIV01_RS00870
old locus tag: HIV01_000870
EC number: 3.1.25.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014036612.1
GO component: GO:0009380 - excinuclease repair complex [Evidence IEA]
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO process: GO:0006289 - nucleotide-excision repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: excinuclease ABC subunit UvrB
translation: MNDSLHPAGFQLVSPYEPAGDQPQAIARLVDGFESGLASQTMLGVTGSGKTFTVANIVQSVQKPTLVMAPNKTLAAQLYGEFKAYFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNEHIEQMRLSATKALLERRDTIIVCTVSAIYGLGDPNEYFRMVLHMVRGERIDQRELIRRLTEMQYTRNDTELRRATYRVRGEVVDVHPAESDSEALRIELFDGEIEQLSVFDPLTGETLRRVPRYTIYPGSHYVTTRRTVLDAIETIKDELRMRLEQLYAENKLVEAQRLAQRTQFDLEMLAEVGYCNGIENYSRHLTGHMPDEPPPCLFDYLPPDALLVVDESHVTVPQIGAMYKGDRSRKETLVQFGFRLPSALDNRPLRFEEWEGRSPRAIYVSATPGPYELRKSEGQIVELVVRPTGLVDPEVEIRPVGTQVDDVLGEIRERVAMGDRVLITTLTKRMAENLTEYLGEHGVRVRYLHSDIETVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSAGSLIQTIGRAARNLRGKAILYADRITNSMQKAIDETDRRRQKQVEYNLEHGITPKSIAKAIVDVMEGARAEPGETAKGRGKARKVAEDLAEYARLSPSQFAARIKALEQQMYQHARDLEFEEAAAVRDQLRQLKDAGFAA
SIO_010081: HIV01_RS00870
subclass of: SO_0000673
so part of: HIV01_RS00870
location: 172012..174045
location: region:172012-174045:1
so has part: feature:172012-174045:1:exon

WP_200604412.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:172012-174045:1:exon

HIV01_RS00875
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00875
old locus tag: HIV01_000875
so part of: sequence
location: 174157..174231
location: region:174157-174231:1
so has part: feature:174157-174231:1:exon
subclass of: SO_0000663

position:174157:1
position: 174157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:174231:1
position: 174231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:174157-174231:1:exon

HIV01_RS00875
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS00875
old locus tag: HIV01_000875
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:174189..174191,aa:Val,seq:gac)
SIO_010081: HIV01_RS00875
subclass of: SO_0000673
so part of: HIV01_RS00875
location: 174157..174231
location: region:174157-174231:1
so has part: feature:174157-174231:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:174157-174231:1:exon

HIV01_RS00880
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: thrS
locus tag: HIV01_RS00880
old locus tag: HIV01_000880
so part of: sequence
location: 174576..176477
location: region:174576-176477:1
so has part: feature:174576-176477:1:exon
subclass of: SO_0000010

position:174576:1
position: 174576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:176477:1
position: 176477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:174576-176477:1:exon

HIV01_RS00880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: thrS
locus tag: HIV01_RS00880
old locus tag: HIV01_000880
EC number: 6.1.1.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017463633.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO process: GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: threonine--tRNA ligase
translation: MIAITLPDGSRREFEQPVSVGEVAASIGAGLAKAALAGKVDGKLVDSSFRIDHDASLEIVTEKHPDALEVLRHSTAHLLAQAVQRLYPGAQVTIGPVIDNGFYYDFAYERPFTPEDLPAIEAEMQKIVKEALPVSRGVKSRDDAVAFFRGIGEAYKAEIIESIPASEDLSLYSQGEFTDLCRGPHVPSTDKLRAFKLMKVAGAYWRGDSNNQMLSRIYGTAWLNDKDLKAYLTQLEEAEKRDHRKIAKQQDLFHLQEEAPGLIFWHPKGWSIWQVVEQYMRKVYRDSGYQEVRCPQILDVSLWQKSGHWDNYQENMFFTESEKRTYALKPMNCPGHVQVFNHGLHSYRDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHIFCTEDQIEAEVSAFHQQALAVYDVFGFSEIQIKIALRPDKRLGDDATWDKAENALRSALSAAGVQWEELPGEGAFYGPKIEYHLKDAIGRTWQLGTMQVDFMMPGRLGAEYVDESSQRRHPVMLHRAIVGSMERFIGILIEHHAGQFPAWLAPIQAVVMNITDAQGDYVDEVRKTLANQGFRVHADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGQISVRTRGGEDLGTMTVSEFASRLRNEGVQ
SIO_010081: HIV01_RS00880
subclass of: SO_0000673
so part of: HIV01_RS00880
location: 174576..176477
location: region:174576-176477:1
so has part: feature:174576-176477:1:exon

WP_200604413.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:174576-176477:1:exon

HIV01_RS00885
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: infC
locus tag: HIV01_RS00885
old locus tag: HIV01_000885
so part of: sequence
location: 176547..177071
location: region:176547-177071:1
so has part: feature:176547-177071:1:exon
subclass of: SO_0000010

position:176547:1
position: 176547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:177071:1
position: 177071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:176547-177071:1:exon

HIV01_RS00885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: infC
locus tag: HIV01_RS00885
old locus tag: HIV01_000885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019660568.1
GO function: GO:0003743 - translation initiation factor activity [Evidence IEA]
GO process: GO:0006413 - translational initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: translation initiation factor IF-3
translation: MSTPEKPNRKNQEIRVPRVRVIGSDGEMIGVLTRDEALRMAEDEGLDLVEIQPNADPPVCKVMDFGKFRFEQQKKANEAKKKTKQVEIKELKFRPVTDEGDYQIKLRNMRRFLEEGDKVKVNIRFRGREMSHQELGREMAARIEADLGEDIVIESRPRLEGRQMVMMIAPKKKV
SIO_010081: HIV01_RS00885
subclass of: SO_0000673
so part of: HIV01_RS00885
location: 176547..177071
location: region:176547-177071:1
so has part: feature:176547-177071:1:exon

WP_245157025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:176547-177071:1:exon

HIV01_RS00890
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rpmI
locus tag: HIV01_RS00890
old locus tag: HIV01_000890
so part of: sequence
location: 177340..177537
location: region:177340-177537:1
so has part: feature:177340-177537:1:exon
subclass of: SO_0000010

position:177340:1
position: 177340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:177537:1
position: 177537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:177340-177537:1:exon

HIV01_RS00890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rpmI
locus tag: HIV01_RS00890
old locus tag: HIV01_000890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005410436.1
GO component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 50S ribosomal protein L35
translation: MPKIKTNRAAAKRFRKTASGKYKCGHANKSHILTKKATKRKRNLRQTNHVRAEDAGRLDRMLPYL
SIO_010081: HIV01_RS00890
subclass of: SO_0000673
so part of: HIV01_RS00890
location: 177340..177537
location: region:177340-177537:1
so has part: feature:177340-177537:1:exon

WP_027083463.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:177340-177537:1:exon

HIV01_RS00895
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rplT
locus tag: HIV01_RS00895
old locus tag: HIV01_000895
so part of: sequence
location: 177551..177910
location: region:177551-177910:1
so has part: feature:177551-177910:1:exon
subclass of: SO_0000010

position:177551:1
position: 177551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:177910:1
position: 177910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:177551-177910:1:exon

HIV01_RS00895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rplT
locus tag: HIV01_RS00895
old locus tag: HIV01_000895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000124858.1
GO component: GO:0005840 - ribosome [Evidence IEA]
GO function: GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 50S ribosomal protein L20
translation: MARVKRGVTARRRHKKILKQAKGYYHARRKVFRVAKQAVTKALQYAYIGRKQKKRHFRSLWITRINAAARINGMSYSRFINGLLKAGITLDRKVLADIAVHDAQGFAALAEKAKSALAA
SIO_010081: HIV01_RS00895
subclass of: SO_0000673
so part of: HIV01_RS00895
location: 177551..177910
location: region:177551-177910:1
so has part: feature:177551-177910:1:exon

WP_158733136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:177551-177910:1:exon

HIV01_RS00900
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: pheS
locus tag: HIV01_RS00900
old locus tag: HIV01_000900
so part of: sequence
location: 178047..179042
location: region:178047-179042:1
so has part: feature:178047-179042:1:exon
subclass of: SO_0000010

position:178047:1
position: 178047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:179042:1
position: 179042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:178047-179042:1:exon

HIV01_RS00900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: pheS
locus tag: HIV01_RS00900
old locus tag: HIV01_000900
EC number: 6.1.1.20
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019299936.1
GO component: GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phenylalanine--tRNA ligase subunit alpha
translation: MSGIESLTQQALGEIAAADTPDAVEALRVALLGKQGSVTAQLKQLGALPADQRKSAGEAINRARDALTDALGERKRVLDDAALDSRLASESIDVTLPGIDAGRGGLHPVSRTMERIAEIFGRLGFELSNGPEIEDDWHNFEALNFPPHHPARAMHDTFYFGDGRLLRTHTSGVQVRYMQDTRPPLRMIALGKVYRSDSDQTHTPMFHQCEGLLVDEHASFADLKGTLAEFVRAFFERDFEMRFRPSYFPFTEPSAEVDIAWQQPDGSTRWLEVLGCGMVHPNVLRNVGIDPEKYTGYAFGLGVERFAMLRYGVDDLRSFFDNDVRFLKQFA
SIO_010081: HIV01_RS00900
subclass of: SO_0000673
so part of: HIV01_RS00900
location: 178047..179042
location: region:178047-179042:1
so has part: feature:178047-179042:1:exon

WP_200604414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:178047-179042:1:exon

HIV01_RS00905
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: pheT
locus tag: HIV01_RS00905
old locus tag: HIV01_000905
so part of: sequence
location: 179110..181500
location: region:179110-181500:1
so has part: feature:179110-181500:1:exon
subclass of: SO_0000010

position:179110:1
position: 179110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:181500:1
position: 181500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:179110-181500:1:exon

HIV01_RS00905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: pheT
locus tag: HIV01_RS00905
old locus tag: HIV01_000905
EC number: 6.1.1.20
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011037596.1
GO component: GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phenylalanine--tRNA ligase subunit beta
translation: MKFSENWLRQHVPTTATRDELAATLTAIGLEVEEVTALGESLDGVVVGHIVSAEKHPEADRLQVCQVDTGNGTVQIVCGAPNARPGLKAPLAMVGANLPGGIAIKAAKLRGVESSGMLCSAKELGVDPDASGLLELPVDAPVGAPLAQYLGLPDASIEIKLTPNRADCFSVRGIAYDVAAALASEVHDFDATPVVAQSDATMVVELQAGARVPRFVGRVIDNVDATVATPAWMAERLRRSGVRPISFLVDVTQYVMLELGQPMHAFDKATLEGAVVVRPARAGEELKLLDGRTVALDEEFLVVADSRGGNGARAVALGGIMGGFDTRVTDATRSVFLEAAHWVPSAIIGRSRKLGMHTDAGHRFERGVDPELPRIAVEYATKLILDIAGGVTGPIIEAVLPEHLQPSQPITLRRARLARVLGLQVADAEVERILRALGLSVENLADGWRVIPPSRRFDLAIEEDLIEEIARIHGYDSIPTTLPSGAARLVAPSETRVEDASARRQMASRDYLEAVNYAFVEADLLARWGKADGAVPLANPLSAELGVMRTALLPGLVAALARNTVRQQPRVRLFELGNVFSANGSDAPRETPRIAAAICGEATAEQWATTARPAGFHDLRGDLDSLAALAGANLEYRPSQPSWAHPGRSADVYRDGVQLGWIGQLHPRLQRSLDIDVDVVAFELDLEPLFRRAVAKAGALSKYPSVRRDLAFVVAESVTTWGALSAAVRRAAGTALRDLVLFDKYQGKGVEPGFKSLAMGLILQDESRTLTDRDVDATVASVTDALQREHGAVIRG
SIO_010081: HIV01_RS00905
subclass of: SO_0000673
so part of: HIV01_RS00905
location: 179110..181500
location: region:179110-181500:1
so has part: feature:179110-181500:1:exon

WP_207527038.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:179110-181500:1:exon

HIV01_RS00910
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00910
old locus tag: HIV01_000910
so part of: sequence
location: 181517..181834
location: region:181517-181834:1
so has part: feature:181517-181834:1:exon
subclass of: SO_0000010

position:181517:1
position: 181517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:181834:1
position: 181834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181517-181834:1:exon

HIV01_RS00910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00910
old locus tag: HIV01_000910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002811076.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: integration host factor subunit alpha
translation: MALTKAEMAERLFDEVGLNKREAKEFVDSFFDALREALEQGRQVKLSGFGNFDLRRKNQRPGRNPKTGEEIPISARTVVTFRPGQKLKERVEAYSGVEQAGVKHA
SIO_010081: HIV01_RS00910
subclass of: SO_0000673
so part of: HIV01_RS00910
location: 181517..181834
location: region:181517-181834:1
so has part: feature:181517-181834:1:exon

WP_200604416.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:181517-181834:1:exon

HIV01_RS00915
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00915
old locus tag: HIV01_000915
so part of: sequence
location: 181827..182183
location: region:181827-182183:1
so has part: feature:181827-182183:1:exon
subclass of: SO_0000010

position:181827:1
position: 181827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:182183:1
position: 182183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181827-182183:1:exon

HIV01_RS00915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00915
old locus tag: HIV01_000915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019182707.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MLDPGSNRELPPIPAKRYFTIGEVSELCDVKPHVLRYWETEFPMLNPVKRRGNRRYYQRHEVLMVRQIRGLLYEQGYTIGGARLRLEGESAKDESALSSQIIKQVRMELEEVLTLLRR
SIO_010081: HIV01_RS00915
subclass of: SO_0000673
so part of: HIV01_RS00915
location: 181827..182183
location: region:181827-182183:1
so has part: feature:181827-182183:1:exon

WP_158733140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:181827-182183:1:exon

HIV01_RS00920
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00920
old locus tag: HIV01_000920
so part of: sequence
location: 182283..182359
location: region:182283-182359:1
so has part: feature:182283-182359:1:exon
subclass of: SO_0000663

position:182283:1
position: 182283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:182359:1
position: 182359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182283-182359:1:exon

HIV01_RS00920
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS00920
old locus tag: HIV01_000920
product: tRNA-Pro
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:182317..182319,aa:Pro,seq:ggg)
SIO_010081: HIV01_RS00920
subclass of: SO_0000673
so part of: HIV01_RS00920
location: 182283..182359
location: region:182283-182359:1
so has part: feature:182283-182359:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:182283-182359:1:exon

HIV01_RS00925
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00925
old locus tag: HIV01_000925
so part of: sequence
location: complement(182414..182974)
location: region:182414-182974:-1
so has part: feature:182414-182974:-1:exon
subclass of: SO_0000010

position:182414:-1
position: 182414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:182974:-1
position: 182974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182414-182974:-1:exon

HIV01_RS00925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00925
old locus tag: HIV01_000925
inference: COORDINATES: protein motif:HMM:NF013989.2
GO function: GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dihydrofolate reductase family protein
translation: MRPLRYSINLTLDGCCDHRGIEADAELHRHHASNLAEADALLFGRVTYQMMEEAWRKPAETGVMPDWAEPWVMPFAQTIHAAKKYVVSTTLEQVDWNAELLRGDLHDAVQRLKREPGKAIFVGGVTLPRALAELGLIDEYEFVVHPRLAGHGPTLFAGMPKPVDLKLVSEGQLDSGALVLRYEPRR
SIO_010081: HIV01_RS00925
subclass of: SO_0000673
so part of: HIV01_RS00925
location: complement(182414..182974)
location: region:182414-182974:-1
so has part: feature:182414-182974:-1:exon

WP_207527039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:182414-182974:-1:exon

HIV01_RS00930
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00930
old locus tag: HIV01_000930
so part of: sequence
location: complement(182991..183455)
location: region:182991-183455:-1
so has part: feature:182991-183455:-1:exon
subclass of: SO_0000010

position:182991:-1
position: 182991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:183455:-1
position: 183455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182991-183455:-1:exon

HIV01_RS00930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00930
old locus tag: HIV01_000930
inference: COORDINATES: protein motif:HMM:NF016807.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BLUF domain-containing protein
translation: MRTTDLNNALRAIAYVSTATRTLQPAEIDGLLLDARGFNAMSGVTGVLFFNGQQFFQYFEGLPDYVDAAYERIRQARSHADIRELMNAPVANRQFETWHMGFCNATASTLQDLAQARWEESIPVTRSSFKRNDGIALLLHYWSKWQAENPVAPA
SIO_010081: HIV01_RS00930
subclass of: SO_0000673
so part of: HIV01_RS00930
location: complement(182991..183455)
location: region:182991-183455:-1
so has part: feature:182991-183455:-1:exon

WP_200604418.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:182991-183455:-1:exon

HIV01_RS00935
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00935
old locus tag: HIV01_000935
so part of: sequence
location: 183783..184253
location: region:183783-184253:1
so has part: feature:183783-184253:1:exon
subclass of: SO_0000010

position:183783:1
position: 183783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:184253:1
position: 184253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183783-184253:1:exon

HIV01_RS00935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00935
old locus tag: HIV01_000935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005914032.1
GO function: GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cupin domain-containing protein
translation: MHPRAEHLISELQLAPHPEGGYFRRVYASETSVEAAGTSRPALTAIRFLLARGQVSQWHRIDADECWHWQEGDALELLEFDPGTAALTTTLLDRSGQGAPMHVVPAGRWQAARPLGEYALVACTVSPGFVWEGFEMLDGSSEVAAVLSRLGSYYLG
SIO_010081: HIV01_RS00935
subclass of: SO_0000673
so part of: HIV01_RS00935
location: 183783..184253
location: region:183783-184253:1
so has part: feature:183783-184253:1:exon

WP_200604419.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:183783-184253:1:exon

HIV01_RS00940
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00940
old locus tag: HIV01_000940
so part of: sequence
location: complement(184241..185044)
location: region:184241-185044:-1
so has part: feature:184241-185044:-1:exon
subclass of: SO_0000010

position:184241:-1
position: 184241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185044:-1
position: 185044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:184241-185044:-1:exon

HIV01_RS00940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00940
old locus tag: HIV01_000940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019466697.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transporter
translation: MDINRWMACFAPMALLFSSPALAQDADELAKKLSNPVASLISVPLQFNYDDGIGPTDDGSKTFVNVQPVIPVSINEDWNLISRTIVPITYQENIFPGSGSQFGLGDTLQSVFFSPKEPTASGWTWGVGPVLYLPTATDELLGAEKWGAGPTAVVLKQTKDGWTYGALVNHVWSFAGEDNRADISSTFLQPFLAKGLGQGRTLSANLESTYDWKGSQWTVPINLGYSKVSKIGSQLVSYQGGIRYYAEAPDNGADWGLRFTFTLLYPK
SIO_010081: HIV01_RS00940
subclass of: SO_0000673
so part of: HIV01_RS00940
location: complement(184241..185044)
location: region:184241-185044:-1
so has part: feature:184241-185044:-1:exon

WP_245156881.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:184241-185044:-1:exon

HIV01_RS00945
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00945
old locus tag: HIV01_000945
so part of: sequence
location: complement(185178..186743)
location: region:185178-186743:-1
so has part: feature:185178-186743:-1:exon
subclass of: SO_0000010

position:185178:-1
position: 185178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:186743:-1
position: 186743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185178-186743:-1:exon

HIV01_RS00945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00945
old locus tag: HIV01_000945
inference: COORDINATES: protein motif:HMM:NF012311.2
GO function: GO:0008236 - serine-type peptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S8 family serine peptidase
translation: MGRIVPLTQRERTGAHLPRLGGTVTSIREAGLHREAAGREAVRTVLLPGRQFRDRPMSFEEVTVVKSVMSVLTLACLLPITAQAAPGSRQIGVNVLLNTAPSPAILAQLGAHGNVRKVLTEIDAVTLKTTESQLAAIRALDFVLSANPDAERKGAPVDTVSATSFVTGLSTWDQDAVDVTNLGQGRTIAQDGNGVYVAVLDTGLLDTWRQYFPQERIAAQFAKAFNGGGGEQGGISEPPNKWEHDQNSHGTHVTSTILGYSLNGVPINGTAPLATVIPVKVLNQNGSGWSSVVAAGIVYVADLKASGALGNAPVVINMSLGGSELDALEKAAIDFAIDEGVIIVASGGNEGESGMGFPGAYAPVISVAASGWNGQWKPGADGNPGNWWNADNVADPTSVSDFHIADFSSRELAGQDLDVVAPGSWVVGPYQTQSGKTSYFYLSGTSMASPHVAGIAALMLQKNPTLLQADVEDILETAALPMPAGCALLTQPSGPPVQTCWGADATGEGLITAANALSLTP
SIO_010081: HIV01_RS00945
subclass of: SO_0000673
so part of: HIV01_RS00945
location: complement(185178..186743)
location: region:185178-186743:-1
so has part: feature:185178-186743:-1:exon

WP_207527040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:185178-186743:-1:exon

HIV01_RS00950
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00950
old locus tag: HIV01_000950
so part of: sequence
location: 186888..187913
location: region:186888-187913:1
so has part: feature:186888-187913:1:exon
subclass of: SO_0000010

position:186888:1
position: 186888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:187913:1
position: 187913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186888-187913:1:exon

HIV01_RS00950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00950
old locus tag: HIV01_000950
inference: COORDINATES: protein motif:HMM:NF014066.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraB/GumN family protein
translation: MRTGLAPAMLGLSIVFAAVPASAQAPLPPIRDMDTLVVSGVQPGPGMWKITRDDHTLYVLGTLSPLPKRMEWESRDVENVIAQAQEVIQAPSVSIDGKLGIFQRLLLAPKALSARKNPDGQTLQQVVPADMYARWLVLKRKYMGRDEGVEQWRPMMAALELFDEAMDDSDLKQYGMVSPVVEKMARRHKVPLTTTRVTIVIEDPKVALQEFRESKLDDVDCFGKTMQRLESDLEMMRERANAWAIGDIATLKSLPYTDQNEACIKAVSQAAVLRKRAGDIEAKVRERWLDAAELALKNNRVSLAVLPMRELLKPDGYAAQLRARGYSVEEPGEPATATAAP
SIO_010081: HIV01_RS00950
subclass of: SO_0000673
so part of: HIV01_RS00950
location: 186888..187913
location: region:186888-187913:1
so has part: feature:186888-187913:1:exon

WP_200604421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:186888-187913:1:exon

HIV01_RS00955
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00955
old locus tag: HIV01_000955
so part of: sequence
location: complement(187891..188559)
location: region:187891-188559:-1
so has part: feature:187891-188559:-1:exon
subclass of: SO_0000010

position:187891:-1
position: 187891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:188559:-1
position: 188559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187891-188559:-1:exon

HIV01_RS00955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00955
old locus tag: HIV01_000955
EC number: 3.1.3.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019184329.1
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAD family hydrolase
translation: MTDPVPTVVFDFDLTLTRWDTADRFFRWLLKRQAWRLALVLLPLPALAPLLLIRGTRKWPVRYAVWVATLGRSHDDLRALAREHTDALFAIGPPVFLADGLAQLQHHLDQSDRVVIATGCLEVLARELLERAGYGHVPLVGSSLKPWLGGMVRHEHCFGANKPPMLSRLGFAPPWAIAYTDHQCDLPVLELSTQRFLVNPKPDAIRTVERALVQQPTVLQWR
SIO_010081: HIV01_RS00955
subclass of: SO_0000673
so part of: HIV01_RS00955
location: complement(187891..188559)
location: region:187891-188559:-1
so has part: feature:187891-188559:-1:exon

WP_200604422.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:187891-188559:-1:exon

HIV01_RS00960
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00960
old locus tag: HIV01_000960
so part of: sequence
location: complement(188639..189064)
location: region:188639-189064:-1
so has part: feature:188639-189064:-1:exon
subclass of: SO_0000010

position:188639:-1
position: 188639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:189064:-1
position: 189064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:188639-189064:-1:exon

HIV01_RS00960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00960
old locus tag: HIV01_000960
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: nuclear transport factor 2 family protein
translation: MKSRSLAAISLALALAFPQAFAAEGDPGILAVIESFRTSIIDKDRERFLDLFVQQDVPWQSVLDDKSLAQIQGKHPEAIKARFKKENNPVAFIDGIVASKNRSEETFSNIKIDSDGEVAAVTFDYSFLSNGNAPTGARNAG
SIO_010081: HIV01_RS00960
subclass of: SO_0000673
so part of: HIV01_RS00960
location: complement(188639..189064)
location: region:188639-189064:-1
so has part: feature:188639-189064:-1:exon

WP_245156882.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:188639-189064:-1:exon

HIV01_RS00965
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: dxs
locus tag: HIV01_RS00965
old locus tag: HIV01_000965
so part of: sequence
location: complement(189177..191081)
location: region:189177-191081:-1
so has part: feature:189177-191081:-1:exon
subclass of: SO_0000010

position:189177:-1
position: 189177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:191081:-1
position: 191081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189177-191081:-1:exon

HIV01_RS00965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: dxs
locus tag: HIV01_RS00965
old locus tag: HIV01_000965
EC number: 2.2.1.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017910878.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO process: GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO:0009228 - thiamine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 1-deoxy-D-xylulose-5-phosphate synthase
translation: MIDPQRYPRLSRIEVPADLRQFPEEELPAIAEELRAYLIEQVALVGGHFGAGLGVIELTVALHWLFETPVDRLVWDVGHQTYPHKILTGRRDIIHTVKQKDGVAPFPKREESEYDTFGVGHSSTSISAALGMAIALQQMGDERKVVAVIGDGAMTAGMAFEALNHGGGMDPEPNLLVILNDNQMSISENVGGLTQMLGRLTGSRTLNAIREGGKRLLGDKNKPAAKFVKRWEEHWKGMFVPSTLFEEMGFHYTGPIDGHDLPALMSALKVLKTLKGPQLLHIITTKGKGYELAEGDQIGYHAVGPFDPSTGLVSKPGAKKPTYTDVFGEWLCDMAAAEPRLLGITPAMREGSGLVRFSKEYPQRYFDVAIAEQHAVTLAAGMACEGAKPVVAIYSTFLQRGYDQLVHDVAIQNLDVLFALDRGGVVGPDGATHAGNLDLSYLRCVPNMVVMAPSDENECRQMLSTGYHFQGPAAVRYPRGTGPGVAVQANLDTLPIGKAELRRPGSRIALLAFGAIVPAAEKAAEELGLTVVNMRFVKPLDRALILELARSHEGFVTLEDNVVAGGAGSGVAELLAAEGIAMPILHLGLPDEYQHHASREQLLAEAGLDVAGIRAAVLKRWPLLLKPQPQSASL
SIO_010081: HIV01_RS00965
subclass of: SO_0000673
so part of: HIV01_RS00965
location: complement(189177..191081)
location: region:189177-191081:-1
so has part: feature:189177-191081:-1:exon

WP_200604423.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:189177-191081:-1:exon

HIV01_RS00970
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00970
old locus tag: HIV01_000970
so part of: sequence
location: complement(191203..192291)
location: region:191203-192291:-1
so has part: feature:191203-192291:-1:exon
subclass of: SO_0000010

position:191203:-1
position: 191203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:192291:-1
position: 192291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191203-192291:-1:exon

HIV01_RS00970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00970
old locus tag: HIV01_000970
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRLTLGLTGMDPATESALQAAFQAANGRLGERWQMLPDTQADYVIVDMDSMYGPMSWLRLHAAGKSVIALTASQRSQTDFRLANPFDANSVGALLREIGMQAGVSFDEAPAAAAPPAAVAAPAPVAAPAPAPVAAPTPAPAPAPSVAAVAPQAAPAAVVAAPVAAPAPAPAAQPARSGADTLLDWLDNDRLKGRMRVRGDEVVLIDMDQRVYHGPAALKPLSALFEGKLSTADFISVDAATWDSESARLGAAMPLVRLMWFGNLLAGKGALAPEHDPQRRYQMVKWPQTERDYPKHFRIATVMMKGPALIPEIAEASGVSVAEVADFINANLATGFAEVEREPEPLEAGKSGSGLFGRLRGR
SIO_010081: HIV01_RS00970
subclass of: SO_0000673
so part of: HIV01_RS00970
location: complement(191203..192291)
location: region:191203-192291:-1
so has part: feature:191203-192291:-1:exon

WP_200604424.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:191203-192291:-1:exon

HIV01_RS00975
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00975
old locus tag: HIV01_000975
so part of: sequence
location: complement(192505..193167)
location: region:192505-193167:-1
so has part: feature:192505-193167:-1:exon
subclass of: SO_0000010

position:192505:-1
position: 192505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:193167:-1
position: 193167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:192505-193167:-1:exon

HIV01_RS00975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00975
old locus tag: HIV01_000975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017355248.1
GO function: GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease
translation: METDRAPLRLVRTGTSLGPDTPSFAPRPALDRLNSVRLLSLDAHGRVLDWMSWQDATCLYVRGAVAWTLGDPCLQVHGGINRLSGEQSVIELHPIVAARSHARAHALDPTPALTNAALFARDGYLCMYCGHDFSRPHLTRDHVMPVSKGGRDIWENVVAACFHCNSRKGNRTPQQASMPLLAVPYRPSWVEHLILSNRNILADQMAFLRNQLPKNARLQA
SIO_010081: HIV01_RS00975
subclass of: SO_0000673
so part of: HIV01_RS00975
location: complement(192505..193167)
location: region:192505-193167:-1
so has part: feature:192505-193167:-1:exon

WP_200604425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:192505-193167:-1:exon

HIV01_RS00980
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00980
old locus tag: HIV01_000980
pseudo: true
so part of: sequence
location: complement(193275..>195056)
location: region:193275-195056:-1
so has part: feature:193275-195056:-1:exon
subclass of: SO_0000010

position:193275:-1
position: 193275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195056:-1
position: 195056
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:193275-195056:-1:exon

HIV01_RS00980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00980
old locus tag: HIV01_000980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019660543.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: acyl-CoA dehydrogenase C-terminal domain-containing protein
SIO_010081: HIV01_RS00980
subclass of: SO_0000673
so part of: HIV01_RS00980
location: complement(193275..>195056)
location: region:193275-195056:-1
so has part: feature:193275-195056:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:193275-195056:-1:exon

HIV01_RS00985
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00985
old locus tag: HIV01_000985
so part of: sequence
location: complement(195127..195627)
location: region:195127-195627:-1
so has part: feature:195127-195627:-1:exon
subclass of: SO_0000010

position:195127:-1
position: 195127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195627:-1
position: 195627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195127-195627:-1:exon

HIV01_RS00985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00985
old locus tag: HIV01_000985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017355246.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LEA type 2 family protein
translation: MKHEAIWKRWSGLALLLSLLTALTLAGCSSGPVRRVSEPSARIQQLTVRADGSWSAELRIENFSSIPMRFDAVDLALKVADTAAGSLRAQPGLSIGPESADVITVTLAPQAAAKLAAADALAAGRSLAYELTGHIDATPDQGKLRSFEVERSSALSPAPGLPGVLR
SIO_010081: HIV01_RS00985
subclass of: SO_0000673
so part of: HIV01_RS00985
location: complement(195127..195627)
location: region:195127-195627:-1
so has part: feature:195127-195627:-1:exon

WP_200604427.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:195127-195627:-1:exon

HIV01_RS00990
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00990
old locus tag: HIV01_000990
so part of: sequence
location: complement(195692..195871)
location: region:195692-195871:-1
so has part: feature:195692-195871:-1:exon
subclass of: SO_0000010

position:195692:-1
position: 195692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195871:-1
position: 195871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195692-195871:-1:exon

HIV01_RS00990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00990
old locus tag: HIV01_000990
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATTNASERALARIRIPSSASRLSRAARARRAVLRYLAVWGAVAALALIAQAVAPAAAT
SIO_010081: HIV01_RS00990
subclass of: SO_0000673
so part of: HIV01_RS00990
location: complement(195692..195871)
location: region:195692-195871:-1
so has part: feature:195692-195871:-1:exon

WP_200604428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:195692-195871:-1:exon

HIV01_RS00995
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS00995
old locus tag: HIV01_000995
so part of: sequence
location: complement(196124..197389)
location: region:196124-197389:-1
so has part: feature:196124-197389:-1:exon
subclass of: SO_0000010

position:196124:-1
position: 196124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:197389:-1
position: 197389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196124-197389:-1:exon

HIV01_RS00995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS00995
old locus tag: HIV01_000995
inference: COORDINATES: protein motif:HMM:NF013283.2
GO component: GO:0019867 - outer membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BamA/TamA family outer membrane protein
translation: MHEPQPDTVEARIVEPRIVEPRIVEIRLVGNEKTRDKVILRELDLAPGDIADPAAIEDGRQAVLDLGLFREVKATTHAVDGGVVLELAVREKYHLLVLPRIDASSDSDYSYGAQLRWSNVWGLNHRLNLTVEKGKFPNERDRLEETSARLGYRAPYIFDSPYELRVRLERRERVTPIIDPVTNEVSDDSFDETFDHFEIGAARDLRGNRPRSGWILGGALFWQRQDTEGEFAPPPDGQALALVGTADYDDMRFHVYSETGRRFNARVELAAEGVASDYDYTRSTASYFQSRAIGNVPHQTVHVLGSAGVLTGGTGSRNEFSLGGSGQMRGYDSDFLEGNYYYYGSLEYLRPVKWDWLRLLAFVEVGGSGDDREGLRDGSPYADIGVGVRIRLSWFVGVEIELGWAYPLRGGEGANFFAGGN
SIO_010081: HIV01_RS00995
subclass of: SO_0000673
so part of: HIV01_RS00995
location: complement(196124..197389)
location: region:196124-197389:-1
so has part: feature:196124-197389:-1:exon

WP_200604429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:196124-197389:-1:exon

HIV01_RS01000
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01000
old locus tag: HIV01_001000
so part of: sequence
location: complement(197498..198016)
location: region:197498-198016:-1
so has part: feature:197498-198016:-1:exon
subclass of: SO_0000010

position:197498:-1
position: 197498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:198016:-1
position: 198016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:197498-198016:-1:exon

HIV01_RS01000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01000
old locus tag: HIV01_001000
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTHPTPGLHGPIAVRPRPSPFAGSNPYLDRPLSQLFSACQQRADGLLRRDQTYTAEERASLAQDTAHLLLAVSPALAHGEEMPGSPARAILQGRGDFVEEHWRAHESALRSARYRTLVMASDLALGGHARVWRRDARIDGELIYDLALSSEMGLLRALSELAKLRTAAARRR
SIO_010081: HIV01_RS01000
subclass of: SO_0000673
so part of: HIV01_RS01000
location: complement(197498..198016)
location: region:197498-198016:-1
so has part: feature:197498-198016:-1:exon

WP_200604430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:197498-198016:-1:exon

HIV01_RS01005
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01005
old locus tag: HIV01_001005
so part of: sequence
location: 198175..200670
location: region:198175-200670:1
so has part: feature:198175-200670:1:exon
subclass of: SO_0000010

position:198175:1
position: 198175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200670:1
position: 200670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:198175-200670:1:exon

HIV01_RS01005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01005
old locus tag: HIV01_001005
EC number: 3.6.4.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003480044.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase
translation: MSPPTHALALNHDSDERAIALREDGPAFIDSGAADSGLLAQALSRRYAGRITGSFTVPGSEGRYADLPSDLPPSLAQALRARGIERLYSHQAQAWEAAGRGDNVAIVTPTASGKSLCYTLPVVAAAMTSRAKALYLFPTKALAQDQVAELLELNRAGDLGVKAFTFDGDTPGDARQAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLRYVVIDEVHTYRGVFGSHVTNVLRRLKRICAFYGARPQFILCSATIGNPQAHAEALIEDRVHAITESGAPTGDKHVLLWNPPVVNADLGLRASARSQSNRIARIGIKSGLKTLVFAQSRLMVEVLTKYLKDVFDHDPRKPPRIRAYRGGYLPSERRDAERAMRDGRIDGIISTSALELGVDIGSLDVVVLNGYPGTVAATWQRFGRAGRRQQPSLGILVANSQPLDQYMVRHPDFFADSPPEHARTAPDQPLILFDHIRCAAFELPFHVREMFGPIEPEVYLEALAESAVVHREGERWEWIADSYPANAVSLRSVADGNFVVVDRTDGRQTIIAEVDYSAAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVQRTHVDYYTDSIDYTKLKVLERFDGCAAGQGDASHGEVHVVRRVSGYKKIRYYTHENIGYGPVNLPDQELHTTSVWWQLPQATLLSWFASRQDALDGFLGAAYALHIVATVAVMADARDLQKAVGNGDGAWFVSSDQGGRGTLRGVEGSIELADVQQFVPTVYLYDNFPGGVGLSEPLWRRQEELVLRAMELVERCDCRSGCPACVGPILAASEEGEGATPKALARRVLSLLIEARELASDVNVNVVGT
SIO_010081: HIV01_RS01005
subclass of: SO_0000673
so part of: HIV01_RS01005
location: 198175..200670
location: region:198175-200670:1
so has part: feature:198175-200670:1:exon

WP_200604431.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:198175-200670:1:exon

HIV01_RS01010
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01010
old locus tag: HIV01_001010
so part of: sequence
location: 200667..201536
location: region:200667-201536:1
so has part: feature:200667-201536:1:exon
subclass of: SO_0000010

position:200667:1
position: 200667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:201536:1
position: 201536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:200667-201536:1:exon

HIV01_RS01010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01010
old locus tag: HIV01_001010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017917714.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribonuclease H-like domain-containing protein
translation: MTVTLEKLRALRRQAGETASGNRAGEDGVPQALFAAPVVGAPRPDPGAQLDALRRMLGVRQRHAPAPLASRDRSIPGIEIEPGLFLAESTQPMRAPPSVPLAFAKREDSVDTDALLFFDTETTGLAGGTGTRAFMIGAADWSAGTLRIRQLTITTLAAEPAMLRTFAQWLSARTVLCSYNGRCYDAPLLKTRFRLARMGDPISALDHVDLLFPTRRRYRGVWENCRLATIEREALRIVREDDLPGSEAPAAWLSFLRGGSSHNLRRVAEHNLQDVVTLGRLFVHLAEAA
SIO_010081: HIV01_RS01010
subclass of: SO_0000673
so part of: HIV01_RS01010
location: 200667..201536
location: region:200667-201536:1
so has part: feature:200667-201536:1:exon

WP_200604432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:200667-201536:1:exon

HIV01_RS01015
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01015
old locus tag: HIV01_001015
so part of: sequence
location: complement(201546..202088)
location: region:201546-202088:-1
so has part: feature:201546-202088:-1:exon
subclass of: SO_0000010

position:201546:-1
position: 201546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:202088:-1
position: 202088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201546-202088:-1:exon

HIV01_RS01015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01015
old locus tag: HIV01_001015
EC number: 2.7.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016902166.1
GO function: GO:0003950 - NAD+ ADP-ribosyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA 2'-phosphotransferase
translation: MRRRITDTSRYLSYVLRHAPGAIGLTLDREGWADIDDLIASARQAGHTLDPRVIRAVVEGNDKQRFALSVCGQRIRAVQGHSTDAVTIQREPALPPERLFHGTATRFLDSILVEGLRPGIRHHVHLSEDIAAAAQVGQRHGTPVVLTIQSRQMHQQGYAFYLADNGVWLTGPIPKTFITT
SIO_010081: HIV01_RS01015
subclass of: SO_0000673
so part of: HIV01_RS01015
location: complement(201546..202088)
location: region:201546-202088:-1
so has part: feature:201546-202088:-1:exon

WP_200604433.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:201546-202088:-1:exon

HIV01_RS01030
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01030
old locus tag: HIV01_001030
so part of: sequence
location: 202645..203985
location: region:202645-203985:1
so has part: feature:202645-203985:1:exon
subclass of: SO_0000010

position:202645:1
position: 202645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:203985:1
position: 203985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:202645-203985:1:exon

HIV01_RS01030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01030
old locus tag: HIV01_001030
inference: COORDINATES: protein motif:HMM:NF012264.2
GO function: GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: c-type cytochrome
translation: MTSYVRLGLAHVLALVLASCSAGDPASLAYAPKPIVQLAPIPGLKVRPLTDRTFERTDARRARGEYLAEGILACAACHSERDWHKPGGPIPAGRAYAGRVWKTDGKTWLVAPNITPEPHTGAGRWSDDMLARAIREGIGHDGRLLHPQMWYRSFRLLSDEDLASVVVYLRSLPAVRNTLPQTVLSDEQVKRFVGEPRPITSPVSEPPHATPEERGRYLAGLADCGGCHTLWDGKRLPGAFAGGNEVGRDGRTVFSANITPDPTGMSYDAAGFIQVIRTGKAGLLAPEMPWLFYRRLSDDDLTALHAFLKTRYPVSHRISNLGPGTACAVCGGQHPLGSANRLVPVRGIAVPERLLRDYVGSYRIDEYDWTLRIELLHGKLHMVDGEAPPKELVALTQSRFAMDGGLGPLRFERDGEGRVARVVSEDVEDVPLERIAEVAAKAGGSP
SIO_010081: HIV01_RS01030
subclass of: SO_0000673
so part of: HIV01_RS01030
location: 202645..203985
location: region:202645-203985:1
so has part: feature:202645-203985:1:exon

WP_200604434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:202645-203985:1:exon

HIV01_RS01035
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01035
old locus tag: HIV01_001035
so part of: sequence
location: 204330..205391
location: region:204330-205391:1
so has part: feature:204330-205391:1:exon
subclass of: SO_0000010

position:204330:1
position: 204330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205391:1
position: 205391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:204330-205391:1:exon

HIV01_RS01035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01035
old locus tag: HIV01_001035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005411068.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lipid A deacylase LpxR family protein
translation: MRSQFIGKWLLAATAISFCSLGTAQAHGREDCTSGRTRLPPIVNLRVDNDVIGGQDQGYSNGVQLTLVSPNLRDYTNDPCIPRLAQWVNSYLGALQPETFEQQNMIATFAQGIFTPTDFSRSDLIEDDRPYVAALLVGLGYNAREGDTLRTTQLQIGIVGPAALGKQAQDAVHQITGSEKFRGWDNQLENEPVFRIVHERMRRFSSSDGAHGWGWDTIAHYGGSFGNLATYLNTGAEFRFGVNLPDDFGSTPLRPAGENTAPTREPQSQYVPGAHLFVTFDTRWVLYDITLDGNTFRDSHSVDKRHAVANIGYGVALMRHRWKFALARYHGTREFDGQRETPVFGSFTISRAF
SIO_010081: HIV01_RS01035
subclass of: SO_0000673
so part of: HIV01_RS01035
location: 204330..205391
location: region:204330-205391:1
so has part: feature:204330-205391:1:exon

WP_200604435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:204330-205391:1:exon

HIV01_RS01040
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01040
old locus tag: HIV01_001040
so part of: sequence
location: 205473..205844
location: region:205473-205844:1
so has part: feature:205473-205844:1:exon
subclass of: SO_0000010

position:205473:1
position: 205473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205844:1
position: 205844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205473-205844:1:exon

HIV01_RS01040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01040
old locus tag: HIV01_001040
inference: COORDINATES: protein motif:HMM:NF013098.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VOC family protein
translation: MAAQTRSLVAFAHVADVERSIRFYADLGFKVGNSVVPEGSTIPVWAWLVSEKANLMVGLASGPVDSSQQAILFYLYFDDIKQTRAALVELGHGPGEIKYPFYMPGGECRLEDPDGYVLMLAQI
SIO_010081: HIV01_RS01040
subclass of: SO_0000673
so part of: HIV01_RS01040
location: 205473..205844
location: region:205473-205844:1
so has part: feature:205473-205844:1:exon

WP_200604436.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:205473-205844:1:exon

HIV01_RS01045
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01045
old locus tag: HIV01_001045
so part of: sequence
location: 205962..206909
location: region:205962-206909:1
so has part: feature:205962-206909:1:exon
subclass of: SO_0000010

position:205962:1
position: 205962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:206909:1
position: 206909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205962-206909:1:exon

HIV01_RS01045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01045
old locus tag: HIV01_001045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018974103.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GlxA family transcriptional regulator
translation: MLTVGFVLPPGFQIMGLAAASAFELANVVAKEQLYRVLLLSERGGPVMNSFGIPVETRPLARNRVDTLIVTGLLVPAPSTPELLRQVRRATETARRTASVCTGAFILGETGLLDGRRVTTHWFHARDLQKQFPQAHVEDDRIYIIDGNIWTSAGMSASVDVALGMIEKDFGADLSRKVAQNLVVYHRRAGGQSQHSALLELDAKSDRIQSALAYARQNLRAPLTVEELAEAAHLSPRQFTRAFRAETGQSPAKAVEHLRVEAARVMVEQSRHSMDEVATETGFADTERMRRAFLRAFGQPPQVLRRNARMGEALA
SIO_010081: HIV01_RS01045
subclass of: SO_0000673
so part of: HIV01_RS01045
location: 205962..206909
location: region:205962-206909:1
so has part: feature:205962-206909:1:exon

WP_200604437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:205962-206909:1:exon

HIV01_RS01050
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01050
old locus tag: HIV01_001050
so part of: sequence
location: complement(206944..207921)
location: region:206944-207921:-1
so has part: feature:206944-207921:-1:exon
subclass of: SO_0000010

position:206944:-1
position: 206944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:207921:-1
position: 207921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206944-207921:-1:exon

HIV01_RS01050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01050
old locus tag: HIV01_001050
inference: COORDINATES: protein motif:HMM:NF012993.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbon-nitrogen hydrolase family protein
translation: MTIIKAAAVQFSPVLYSREATVDKVVRKILELGELGVQFATFPETVVPYYPYFSAVQTPLELLAGKEHLRLLDQAVTVPSAATDAIGQAARKAGMVVSIGVNERDGGTLYNTQLLFDADGTLVQRRRKITPTHFERMIWGEGDGSGLRAADTRVGRIGQLACFEHNNPLARYALMADGEQIHSAMYPGSAFGEGFAQRMEINIRQHALESGCFVVNATAWLDADQQARIMQDTGCAIEPISGGCFTAIVAPDGMLIGEPLRSGEGVVIADLDFSLIDRRKMLMDSRGHYNRPELLSLLIDRTPATNFHERQGFPAAEARSGMEIL
SIO_010081: HIV01_RS01050
subclass of: SO_0000673
so part of: HIV01_RS01050
location: complement(206944..207921)
location: region:206944-207921:-1
so has part: feature:206944-207921:-1:exon

WP_207527042.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:206944-207921:-1:exon

HIV01_RS01055
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01055
old locus tag: HIV01_001055
so part of: sequence
location: complement(207978..209423)
location: region:207978-209423:-1
so has part: feature:207978-209423:-1:exon
subclass of: SO_0000010

position:207978:-1
position: 207978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:209423:-1
position: 209423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207978-209423:-1:exon

HIV01_RS01055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01055
old locus tag: HIV01_001055
inference: COORDINATES: protein motif:HMM:NF013584.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: amidase family protein
translation: MSNFDTPANLVAPSEAGDLTGLGVAAAATAIRTGEMSSESYATALLRQARANADLDAFISIDETAVLSAARDADKARTQGSTHPLLGVPLGVKDSYLTQGLRTTLGIGNLHEFVPDQDATVVRAVKAAGGIVFGKNNLVEMSYGLTGHNGAHGQARNPRGRAHVTGGSSSGAGASVGAHIVPAALGGDTVGSIRVPASFCGVVGFKPGPGRWSGDGVAPISHVLDTPGVLARSVEDCALIDQVVTGALPHASPRHPGLDGMRLAYAPRQHLERIDADVERAFRETLRRLRDSGADVVEIDLGDDFFAISEAATWTIFLRETMPSISGFLQQHRVPTSFDEIFKALKPGLRDAWAHLVLPDGAGFATQDVYLEALNVHRPEIQRRFDKVFTGAGADALLLPTTPRAAPLIEQQTSFTIAGEAVSDLALARHTVAASLAGLPGISLPMGVSDTGLPIGLELDGAAGSDRKLLDVARRVEAAIG
SIO_010081: HIV01_RS01055
subclass of: SO_0000673
so part of: HIV01_RS01055
location: complement(207978..209423)
location: region:207978-209423:-1
so has part: feature:207978-209423:-1:exon

WP_200604439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:207978-209423:-1:exon

HIV01_RS01060
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01060
old locus tag: HIV01_001060
so part of: sequence
location: complement(209517..209975)
location: region:209517-209975:-1
so has part: feature:209517-209975:-1:exon
subclass of: SO_0000010

position:209517:-1
position: 209517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:209975:-1
position: 209975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209517-209975:-1:exon

HIV01_RS01060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01060
old locus tag: HIV01_001060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005412584.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EF-hand domain-containing protein
translation: MTDNTRNKTASLLGITLAGLVLSGSAFAVQPLAQGYMLGAAHAAAEGKCGEGKCGSTEAKPGAQKSASKTAEGKCGEGQCGDAIFNSIDTDDDARISRAEFLKVAPKGVAVFAKKDTNKDGYIDEMESYLSVKAAYNENGRELPTGLFSTKE
SIO_010081: HIV01_RS01060
subclass of: SO_0000673
so part of: HIV01_RS01060
location: complement(209517..209975)
location: region:209517-209975:-1
so has part: feature:209517-209975:-1:exon

WP_200604440.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:209517-209975:-1:exon

HIV01_RS01065
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01065
old locus tag: HIV01_001065
so part of: sequence
location: complement(210111..210926)
location: region:210111-210926:-1
so has part: feature:210111-210926:-1:exon
subclass of: SO_0000010

position:210111:-1
position: 210111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:210926:-1
position: 210926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210111-210926:-1:exon

HIV01_RS01065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01065
old locus tag: HIV01_001065
EC number: 1.-.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014647161.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SDR family oxidoreductase
translation: MNTRIHKGTALITGASSGIGAVYADRLARDGYDLILVARRADKLRDLARELTTRTGRSVETIAADLTDPDGVARVQEALRTDASITMLVNNAGIGATAPLLQSSIDDMERMITLNVNVLTRLAYAVAPAFVARGTGTIINIASIVALAPELLNGVYGGSKAYVLAFSQSLQHELADKGVRVQAVLPGATATDFWDVAGLPVAHLPQEIVMPVEAMVDAALAGLAQGELVTIPALAELKDWNALESARKALAPQLSSSAPAPRYRTAPTAIN
SIO_010081: HIV01_RS01065
subclass of: SO_0000673
so part of: HIV01_RS01065
location: complement(210111..210926)
location: region:210111-210926:-1
so has part: feature:210111-210926:-1:exon

WP_200604441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:210111-210926:-1:exon

HIV01_RS01070
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01070
old locus tag: HIV01_001070
so part of: sequence
location: 211386..212135
location: region:211386-212135:1
so has part: feature:211386-212135:1:exon
subclass of: SO_0000010

position:211386:1
position: 211386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:212135:1
position: 212135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:211386-212135:1:exon

HIV01_RS01070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01070
old locus tag: HIV01_001070
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDTKMDTLLKAVLDAHGDLKKWAAVKQITADMSLGGPFWAARGWPDVYAGQTVTLDPHNQHIRFAPFTGTGRTSVLDVDPERVALTSNGGEVVEERLHPRGSFPLPFDPMTTPWDAIQVAYFTSAAVWNYLTAPFVFARAGVEAREIEPWTEGAETWRRLAVTFPKSNANHNAEQVFYFDEAFMQRRMDYSPDVTGSPPVAHYSDDHRTFDGFVFPTHRRVYLHDANGVADKSFAPITMDVRSIVLESA
SIO_010081: HIV01_RS01070
subclass of: SO_0000673
so part of: HIV01_RS01070
location: 211386..212135
location: region:211386-212135:1
so has part: feature:211386-212135:1:exon

WP_200604442.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:211386-212135:1:exon

HIV01_RS01075
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01075
old locus tag: HIV01_001075
so part of: sequence
location: 212151..212588
location: region:212151-212588:1
so has part: feature:212151-212588:1:exon
subclass of: SO_0000010

position:212151:1
position: 212151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:212588:1
position: 212588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:212151-212588:1:exon

HIV01_RS01075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01075
old locus tag: HIV01_001075
inference: COORDINATES: protein motif:HMM:NF039665.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6130 family protein
translation: MNAFNKALAATAGGLLIAANCFAQGPTSLVVPVENEPAPRLIVGQPLPGPLATGVAYIPYRVENLRILPVGGPHSKNVSPRIGHLHITVDDLPWAWADYGRSDTIILVNLPRGEHKVLIEAVDPEGGLLTSQTVKFNSPGKPAGR
SIO_010081: HIV01_RS01075
subclass of: SO_0000673
so part of: HIV01_RS01075
location: 212151..212588
location: region:212151-212588:1
so has part: feature:212151-212588:1:exon

WP_200604443.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:212151-212588:1:exon

HIV01_RS01080
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01080
old locus tag: HIV01_001080
so part of: sequence
location: 212605..213138
location: region:212605-213138:1
so has part: feature:212605-213138:1:exon
subclass of: SO_0000010

position:212605:1
position: 212605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213138:1
position: 213138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:212605-213138:1:exon

HIV01_RS01080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01080
old locus tag: HIV01_001080
inference: COORDINATES: protein motif:HMM:NF028004.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome P460 family protein
translation: MNRKTKLWIASAAAALAVVAGVAIGAQDKYALVSPSGVAFADFKGYEDWAVVSSAKTDVLKVIVANPIMIKAYKSGIPGNGQPFPDGAKIAKLQWKPKKSTDAPFDVDVPDVFTQAFLMEKDSKRFPKSGGWGYALFNYSAANDTMTVDPTGVSDCGHACHVKVADKNYIFHPYQKR
SIO_010081: HIV01_RS01080
subclass of: SO_0000673
so part of: HIV01_RS01080
location: 212605..213138
location: region:212605-213138:1
so has part: feature:212605-213138:1:exon

WP_200604444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:212605-213138:1:exon

HIV01_RS01085
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01085
old locus tag: HIV01_001085
so part of: sequence
location: complement(213223..213966)
location: region:213223-213966:-1
so has part: feature:213223-213966:-1:exon
subclass of: SO_0000010

position:213223:-1
position: 213223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213966:-1
position: 213966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213223-213966:-1:exon

HIV01_RS01085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01085
old locus tag: HIV01_001085
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: sel1 repeat family protein
translation: MELLTSVVLAAALAAGPATPAAESLDTVAAPTDAISAGDLDERVRFVANFPNELYRLYGSEAAGKGQWNDALRNFTKAAHYADKYSQHRISLMYWHGAGVARDPALAYAWADLAAERAYPAFLVLREKIWMSLNPAEKDPALSEGEALYAKYGDKVAKRRLAAAILRQNTQITGSRTGQITSKVQVRSPPAGAADLWDNASYEMNSMYASWRLDPERYWAVEDAIWKDGAVEIGPAEKTGNSEPQRP
SIO_010081: HIV01_RS01085
subclass of: SO_0000673
so part of: HIV01_RS01085
location: complement(213223..213966)
location: region:213223-213966:-1
so has part: feature:213223-213966:-1:exon

WP_200604445.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:213223-213966:-1:exon

HIV01_RS01090
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01090
old locus tag: HIV01_001090
so part of: sequence
location: complement(213999..214199)
location: region:213999-214199:-1
so has part: feature:213999-214199:-1:exon
subclass of: SO_0000010

position:213999:-1
position: 213999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:214199:-1
position: 214199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213999-214199:-1:exon

HIV01_RS01090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01090
old locus tag: HIV01_001090
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVTPSRQYLVLTIACLTSLVIADLNVEVKALIQEPTKAWIAGDRPANSGKQQSARLELPGSELEVA
SIO_010081: HIV01_RS01090
subclass of: SO_0000673
so part of: HIV01_RS01090
location: complement(213999..214199)
location: region:213999-214199:-1
so has part: feature:213999-214199:-1:exon

WP_200604446.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:213999-214199:-1:exon

HIV01_RS01095
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01095
old locus tag: HIV01_001095
so part of: sequence
location: complement(214436..214819)
location: region:214436-214819:-1
so has part: feature:214436-214819:-1:exon
subclass of: SO_0000010

position:214436:-1
position: 214436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:214819:-1
position: 214819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:214436-214819:-1:exon

HIV01_RS01095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01095
old locus tag: HIV01_001095
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKELVSDLAWGVGIVVLALASSYARKLGYIEADTVTRIVMCATGLMVAWFGNRMPKKFVPNALARKAARVGGWSMALSGLIYAALWVFAPKQVAVAGGSAAVILGILVTIGYCLSLRSKAKTHSAR
SIO_010081: HIV01_RS01095
subclass of: SO_0000673
so part of: HIV01_RS01095
location: complement(214436..214819)
location: region:214436-214819:-1
so has part: feature:214436-214819:-1:exon

WP_200604447.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:214436-214819:-1:exon

HIV01_RS01100
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01100
old locus tag: HIV01_001100
so part of: sequence
location: complement(214816..215112)
location: region:214816-215112:-1
so has part: feature:214816-215112:-1:exon
subclass of: SO_0000010

position:214816:-1
position: 214816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215112:-1
position: 215112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:214816-215112:-1:exon

HIV01_RS01100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01100
old locus tag: HIV01_001100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008208895.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: autorepressor SdpR family transcription factor
translation: MSQVFKALSDPTRRQVLQLLRKGPLTAGELSDHFDVSKPTMSAHFAVLKEADLVHAEKSGKSVIYHLKLSVLEEALLGFVHSFGVGAEKPKARKEKAR
SIO_010081: HIV01_RS01100
subclass of: SO_0000673
so part of: HIV01_RS01100
location: complement(214816..215112)
location: region:214816-215112:-1
so has part: feature:214816-215112:-1:exon

WP_200604448.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:214816-215112:-1:exon

HIV01_RS01105
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01105
old locus tag: HIV01_001105
so part of: sequence
location: complement(215433..215615)
location: region:215433-215615:-1
so has part: feature:215433-215615:-1:exon
subclass of: SO_0000010

position:215433:-1
position: 215433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215615:-1
position: 215615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215433-215615:-1:exon

HIV01_RS01105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01105
old locus tag: HIV01_001105
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDDRLEGWAKAGYLGGGDFEGGFSATLGTQVKLGRTWGVVAELEFAESWNQYRVGVRASF
SIO_010081: HIV01_RS01105
subclass of: SO_0000673
so part of: HIV01_RS01105
location: complement(215433..215615)
location: region:215433-215615:-1
so has part: feature:215433-215615:-1:exon

WP_207527043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:215433-215615:-1:exon

HIV01_RS01110
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01110
old locus tag: HIV01_001110
so part of: sequence
location: complement(215692..215910)
location: region:215692-215910:-1
so has part: feature:215692-215910:-1:exon
subclass of: SO_0000010

position:215692:-1
position: 215692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215910:-1
position: 215910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215692-215910:-1:exon

HIV01_RS01110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01110
old locus tag: HIV01_001110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKRFALAALLAVAPFATPAQGMSYSYVEGGYDRADIDEEFGDDTEVDGAYVGGSIEVGSRFHLPHHQALLR
SIO_010081: HIV01_RS01110
subclass of: SO_0000673
so part of: HIV01_RS01110
location: complement(215692..215910)
location: region:215692-215910:-1
so has part: feature:215692-215910:-1:exon

WP_200604450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:215692-215910:-1:exon

HIV01_RS01115
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01115
old locus tag: HIV01_001115
so part of: sequence
location: 216159..217268
location: region:216159-217268:1
so has part: feature:216159-217268:1:exon
subclass of: SO_0000010

position:216159:1
position: 216159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:217268:1
position: 217268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:216159-217268:1:exon

HIV01_RS01115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01115
old locus tag: HIV01_001115
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRIAWIAALAACVAAPASSGSFDAKDTLNPGEGILLTNMTCGGPVGGVQVFAEGTSSAGFFGPLKADGSLHCAGGFRTIRLKSGRYYVGQLYSATDNSPVPPDKSPHFSIEAGKLNYVGDLYAGGPISEPLDDETQMRVMGRVLTLLNHEPQMRERLAKPEHAWLAGYEFVTDKSLGPIVPIGAMPSPNSRQMQVTMQIGKPRWKRGEDGQPIVCRRLLPLPEGATPVPGEPRPCDGEFITPAQLVAEEYGASATLRRVEVLDGDDGALTLAATATPPGLKNTERRQLEVPAGQWWDGRQGKVVCYDSATTGTVNITDVSGTCPKKAISPREYLRRKLGKEVRFVSSARVGPDGGLLRIDYDIDVPVQ
SIO_010081: HIV01_RS01115
subclass of: SO_0000673
so part of: HIV01_RS01115
location: 216159..217268
location: region:216159-217268:1
so has part: feature:216159-217268:1:exon

WP_207527044.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:216159-217268:1:exon

HIV01_RS01120
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01120
old locus tag: HIV01_001120
so part of: sequence
location: complement(218308..218874)
location: region:218308-218874:-1
so has part: feature:218308-218874:-1:exon
subclass of: SO_0000010

position:218308:-1
position: 218308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218874:-1
position: 218874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218308-218874:-1:exon

HIV01_RS01120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01120
old locus tag: HIV01_001120
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNDQPLQLTVHLRLGAYYALDAKQFFDRYLMTCNVMEHSAWKFKCFTDLLMAAECALKAHICAASNPPPAAEMLRGFRNGQGHKIDDLADLAHQSSASPIFERVKALLGRHQVHLRYSLEAEQGVFILSDLSYKPHDASWANIATNAVEDLISALPRFPDLPKDWDQRVAFERELYVSYRDSFRRKRS
SIO_010081: HIV01_RS01120
subclass of: SO_0000673
so part of: HIV01_RS01120
location: complement(218308..218874)
location: region:218308-218874:-1
so has part: feature:218308-218874:-1:exon

WP_200604452.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:218308-218874:-1:exon

HIV01_RS01125
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01125
old locus tag: HIV01_001125
so part of: sequence
location: 219371..220090
location: region:219371-220090:1
so has part: feature:219371-220090:1:exon
subclass of: SO_0000010

position:219371:1
position: 219371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:220090:1
position: 220090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219371-220090:1:exon

HIV01_RS01125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01125
old locus tag: HIV01_001125
inference: COORDINATES: protein motif:HMM:NF016883.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phytochelatin synthase family protein
translation: MIAGLSVFTAAAIALGSGIVWNRYLREPQQHLEPMPAHLVVLDTPAGRALLAGSDAVADFDELRAHFVPQSRRAYCGVASALTTLNAGGARLDEAALFSHPNVDSHPLKVSFTGMSLRQLGTLMRAHGARVDIVHASDANLDDFRRVVRQNLAREGDFLILNYERELLGQPPMGHISPVAAYHADSDRLLVLDVAAHRYPPTWVPLEGMWNAMRAPLNAGTTRTRGFLAVHDNAPNHSE
SIO_010081: HIV01_RS01125
subclass of: SO_0000673
so part of: HIV01_RS01125
location: 219371..220090
location: region:219371-220090:1
so has part: feature:219371-220090:1:exon

WP_200604453.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:219371-220090:1:exon

HIV01_RS01135
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01135
old locus tag: HIV01_001135
so part of: sequence
location: complement(220509..221378)
location: region:220509-221378:-1
so has part: feature:220509-221378:-1:exon
subclass of: SO_0000010

position:220509:-1
position: 220509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221378:-1
position: 221378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:220509-221378:-1:exon

HIV01_RS01135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01135
old locus tag: HIV01_001135
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: sensor histidine kinase
translation: MHQFLTANRDQLIARCRVKVAERAPAGTAGKELEHGITVFLDQVIRTLALEMTSDPMRSRKVSGRSGGGKPALSEIGESAAQHGKELMQQGFTIEEVVHDYGDLCQAITDLAFEQDAAISIDEFRTLNRCLDNAIANAVTEFGYQRDFIVADKQALALNERLGFFAHELRNQLCTATLALSVIKGGSVGLGGATGVVLDRALVGLSNLIDRSLAEVRMTAGMPLQNRLFSVGDFLAELKLSASLEADVRGCKLNVSNVDPLLALDVDRDLILAAAGNLLQNAFKVFAPP
SIO_010081: HIV01_RS01135
subclass of: SO_0000673
so part of: HIV01_RS01135
location: complement(220509..221378)
location: region:220509-221378:-1
so has part: feature:220509-221378:-1:exon

WP_207527045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:220509-221378:-1:exon

HIV01_RS01140
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01140
old locus tag: HIV01_001140
so part of: sequence
location: 222162..222395
location: region:222162-222395:1
so has part: feature:222162-222395:1:exon
subclass of: SO_0000010

position:222162:1
position: 222162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:222395:1
position: 222395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222162-222395:1:exon

HIV01_RS01140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01140
old locus tag: HIV01_001140
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQNEVLLDGDSLFVKVIDGRRHVIRIGAAVGTVAFTGPEYFYDLESKYSASELRWMENRFLAHKKRMMLELAGAAAR
SIO_010081: HIV01_RS01140
subclass of: SO_0000673
so part of: HIV01_RS01140
location: 222162..222395
location: region:222162-222395:1
so has part: feature:222162-222395:1:exon

WP_200604456.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:222162-222395:1:exon

HIV01_RS01145
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01145
old locus tag: HIV01_001145
so part of: sequence
location: 222474..222995
location: region:222474-222995:1
so has part: feature:222474-222995:1:exon
subclass of: SO_0000010

position:222474:1
position: 222474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:222995:1
position: 222995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222474-222995:1:exon

HIV01_RS01145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01145
old locus tag: HIV01_001145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019397081.1
GO function: GO:0043169 - cation binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hemerythrin domain-containing protein
translation: MTRDILKTLKTEHDELRGLFAELKETTDRGVKKREGLLEKIEEALIPHAKWEEKVFYPAFKERADREGLQTLAEAISEHHAVENSVIPEVHAADPSTPEFAGRTKVFGEFVDHHAKEEEKTMFKMAREMFSANELAQFDEQYEDWKQSDAASALIAMEKTKAGVKGAVKAMAQ
SIO_010081: HIV01_RS01145
subclass of: SO_0000673
so part of: HIV01_RS01145
location: 222474..222995
location: region:222474-222995:1
so has part: feature:222474-222995:1:exon

WP_200604457.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:222474-222995:1:exon

HIV01_RS01150
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01150
old locus tag: HIV01_001150
so part of: sequence
location: complement(223378..224181)
location: region:223378-224181:-1
so has part: feature:223378-224181:-1:exon
subclass of: SO_0000010

position:223378:-1
position: 223378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:224181:-1
position: 224181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223378-224181:-1:exon

HIV01_RS01150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01150
old locus tag: HIV01_001150
inference: COORDINATES: protein motif:HMM:NF013188.2
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation:proton antiporter
translation: MRFALTSEAGFNDGLAFPFVWLAVALALDAAGEPMDWGRWLALDVLWRVLGGIGIGAAVGYGLMHLIFRSERAPNLSTSSDGLTALAITLIVYGVAELCHTYGFLAVFVGALVVRQLEHDHEYHATLDLFAQQCEKLLTALLLLLLGGAVAGGILRGLGWREITFAAIFVLGVRPLAGWLALLGTALTRRERWAIAIFGVRGIGSLYYLAFAFNHAQFEGTQALWSVVALVVLLSILLHGVSAGWVMDMLDRIRNRRARRPPQARSN
SIO_010081: HIV01_RS01150
subclass of: SO_0000673
so part of: HIV01_RS01150
location: complement(223378..224181)
location: region:223378-224181:-1
so has part: feature:223378-224181:-1:exon

WP_200604458.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:223378-224181:-1:exon

HIV01_RS01155
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01155
old locus tag: HIV01_001155
so part of: sequence
location: complement(224785..225090)
location: region:224785-225090:-1
so has part: feature:224785-225090:-1:exon
subclass of: SO_0000010

position:224785:-1
position: 224785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:225090:-1
position: 225090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224785-225090:-1:exon

HIV01_RS01155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01155
old locus tag: HIV01_001155
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAACVVLALDAEGHDTFHASTIASASEAVSTVSFDVAMLDIEIGKELSFGFAHHLVDIGLRFFFTSARDQNLLPEAFANEPYLQKPYDLDRLILILKELRP
SIO_010081: HIV01_RS01155
subclass of: SO_0000673
so part of: HIV01_RS01155
location: complement(224785..225090)
location: region:224785-225090:-1
so has part: feature:224785-225090:-1:exon

WP_200604459.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:224785-225090:-1:exon

HIV01_RS01160
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01160
old locus tag: HIV01_001160
so part of: sequence
location: complement(225477..225713)
location: region:225477-225713:-1
so has part: feature:225477-225713:-1:exon
subclass of: SO_0000010

position:225477:-1
position: 225477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:225713:-1
position: 225713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225477-225713:-1:exon

HIV01_RS01160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01160
old locus tag: HIV01_001160
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDEKEAFLEGQLTAMQWALWAIIDASPSREAICATALRGVAAHDERYRQSDLSPAVRAEFLKGLNTVAELLFAPRDNT
SIO_010081: HIV01_RS01160
subclass of: SO_0000673
so part of: HIV01_RS01160
location: complement(225477..225713)
location: region:225477-225713:-1
so has part: feature:225477-225713:-1:exon

WP_200604460.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:225477-225713:-1:exon

HIV01_RS01165
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01165
old locus tag: HIV01_001165
so part of: sequence
location: complement(225770..225997)
location: region:225770-225997:-1
so has part: feature:225770-225997:-1:exon
subclass of: SO_0000010

position:225770:-1
position: 225770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:225997:-1
position: 225997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225770-225997:-1:exon

HIV01_RS01165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01165
old locus tag: HIV01_001165
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQLSRAELDRLLASLDEAIVLMRTTYPDRDDLLVAFASAADAIRVQAGTESSYVSARLLAIAIANGLGPVTLKDD
SIO_010081: HIV01_RS01165
subclass of: SO_0000673
so part of: HIV01_RS01165
location: complement(225770..225997)
location: region:225770-225997:-1
so has part: feature:225770-225997:-1:exon

WP_200604461.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:225770-225997:-1:exon

HIV01_RS01170
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01170
old locus tag: HIV01_001170
so part of: sequence
location: 226198..226416
location: region:226198-226416:1
so has part: feature:226198-226416:1:exon
subclass of: SO_0000010

position:226198:1
position: 226198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226416:1
position: 226416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226198-226416:1:exon

HIV01_RS01170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01170
old locus tag: HIV01_001170
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MWQGAVVAIAALILNGLLAMISNGAGGLLRPVVEVLGWVVPIGLFALAFALVISGTWTIWRLRGDFRSAHEG
SIO_010081: HIV01_RS01170
subclass of: SO_0000673
so part of: HIV01_RS01170
location: 226198..226416
location: region:226198-226416:1
so has part: feature:226198-226416:1:exon

WP_200604462.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:226198-226416:1:exon

HIV01_RS01175
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01175
old locus tag: HIV01_001175
so part of: sequence
location: complement(226519..226594)
location: region:226519-226594:-1
so has part: feature:226519-226594:-1:exon
subclass of: SO_0000663

position:226519:-1
position: 226519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:226594:-1
position: 226594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226519-226594:-1:exon

HIV01_RS01175
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS01175
old locus tag: HIV01_001175
product: tRNA-Phe
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(226559..226561),aa:Phe,seq:gaa)
SIO_010081: HIV01_RS01175
subclass of: SO_0000673
so part of: HIV01_RS01175
location: complement(226519..226594)
location: region:226519-226594:-1
so has part: feature:226519-226594:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:226519-226594:-1:exon

HIV01_RS01180
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01180
old locus tag: HIV01_001180
so part of: sequence
location: 226766..227206
location: region:226766-227206:1
so has part: feature:226766-227206:1:exon
subclass of: SO_0000010

position:226766:1
position: 226766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227206:1
position: 227206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226766-227206:1:exon

HIV01_RS01180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01180
old locus tag: HIV01_001180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017909671.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6491 family protein
translation: MKALVFACLAALFASGCASQSRISDADKLQLYRAHAGAPVPNFQYFGRLDGWTPLGETALAVWTKPSEVYLLELKNTCQDLDFAQAITVTNQFGRVYQNFDKVIVLGQGANQIPCWIKEIRPVDAKALKQAESEKRAAQVAEREKT
SIO_010081: HIV01_RS01180
subclass of: SO_0000673
so part of: HIV01_RS01180
location: 226766..227206
location: region:226766-227206:1
so has part: feature:226766-227206:1:exon

WP_200604463.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:226766-227206:1:exon

HIV01_RS01185
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01185
old locus tag: HIV01_001185
so part of: sequence
location: complement(227208..227480)
location: region:227208-227480:-1
so has part: feature:227208-227480:-1:exon
subclass of: SO_0000010

position:227208:-1
position: 227208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:227480:-1
position: 227480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:227208-227480:-1:exon

HIV01_RS01185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01185
old locus tag: HIV01_001185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019183247.1
GO function: GO:0005506 - iron ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: oxidative damage protection protein
translation: MPRTVYCEYEKRETEGLDYVPWPGELGKRIFAHIGKPAWAAWLAHQTMLINENRLSPLDPKHRAFLEGEMEKFLFGGDAAKPAGYVAPEA
SIO_010081: HIV01_RS01185
subclass of: SO_0000673
so part of: HIV01_RS01185
location: complement(227208..227480)
location: region:227208-227480:-1
so has part: feature:227208-227480:-1:exon

WP_200604464.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:227208-227480:-1:exon

HIV01_RS01190
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: mutY
locus tag: HIV01_RS01190
old locus tag: HIV01_001190
so part of: sequence
location: complement(227484..228566)
location: region:227484-228566:-1
so has part: feature:227484-228566:-1:exon
subclass of: SO_0000010

position:227484:-1
position: 227484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:228566:-1
position: 228566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:227484-228566:-1:exon

HIV01_RS01190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: mutY
locus tag: HIV01_RS01190
old locus tag: HIV01_001190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014160094.1
GO function: GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: A/G-specific adenine glycosylase
translation: MSTTTSVDPFATRLLAWFDVSGRHDLPWQHPRSPYRVWLSEIMLQQTQVKTAAPYFERFVAALPTLRDLAAAPLDDVLALWSGLGYYARARNLHAAAKRCVELHDGDLPRDLDALTALPGIGRSTAAAIASQAWGERCAILDGNVKRVLTRYHGIDGYPGLPAVEKKLWSLAEDHVARAELPPLRMADYTQAQMDLGATLCTRADPACVLCPMQDDCVARREGRVADLPTPKPGKTPPQKYAHVLWAEDSDGRILLQRRPPSGIWASLWTLPQAEDDTLAQDWFQQHLTGEFSHAQKLPAIDHAFSHYKLQLQPLRWRGTALRGRIGDNDDLRWVAREELGAIGIPAPIRKLLEASAREP
SIO_010081: HIV01_RS01190
subclass of: SO_0000673
so part of: HIV01_RS01190
location: complement(227484..228566)
location: region:227484-228566:-1
so has part: feature:227484-228566:-1:exon

WP_245156883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:227484-228566:-1:exon

HIV01_RS01195
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01195
old locus tag: HIV01_001195
so part of: sequence
location: complement(228563..229843)
location: region:228563-229843:-1
so has part: feature:228563-229843:-1:exon
subclass of: SO_0000010

position:228563:-1
position: 228563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:229843:-1
position: 229843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:228563-229843:-1:exon

HIV01_RS01195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01195
old locus tag: HIV01_001195
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATPEPAIPRRPSRRRNLVLIALVVALALFVLALRWVGQPSRVAGLILSQAGNALGLEITAAGASEYRLRGTPMLLLRDVVARQPGAPTPLLRAERIQLELPWATIRAAGDDLTVRRIELDAPQLDLAALQRWQATRPPSKTRIPTLTEGMRLQRGRVIGDGWSVDALDIDLPALYPDRALSAHLRGRFISGTLAAPFDLDAALTRFAVNAGLGLSGDVGVESPPWSLPMRLTLSGRVRDGDDGMGVDVIRLGAVARYRNGETELPFVFGLAGPLRLHSGEVTMTPLGFALRGRDAMPSFHARGGFAFGDALALRLDGMIADWPKAWPALPEPLESSVSALPFKYEYRGRADLSDTSALQLQRDETHFDGHFRLPEVLTWIDTIDQGTPLPPLAGHLSTPKLDIAGGTLEGVEVDFAPSPGEAMTP
SIO_010081: HIV01_RS01195
subclass of: SO_0000673
so part of: HIV01_RS01195
location: complement(228563..229843)
location: region:228563-229843:-1
so has part: feature:228563-229843:-1:exon

WP_200604465.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:228563-229843:-1:exon

HIV01_RS01200
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: ftsY
locus tag: HIV01_RS01200
old locus tag: HIV01_001200
so part of: sequence
location: complement(229861..231099)
location: region:229861-231099:-1
so has part: feature:229861-231099:-1:exon
subclass of: SO_0000010

position:229861:-1
position: 229861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:231099:-1
position: 231099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:229861-231099:-1:exon

HIV01_RS01200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: ftsY
locus tag: HIV01_RS01200
old locus tag: HIV01_001200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019661208.1
GO function: GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
GO process: GO:0009306 - protein secretion [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: signal recognition particle-docking protein FtsY
translation: MLSFFRRKKPQTPAEAAKPGTSEGAYSTEELAAAFPAPLEAEATDAEPVVEPPQPEHREPEPVPAEIIAAALDVEPVQTQAAEPEPQLSLPPEAALATHPIVAPAAPGKTGWRERLRGSSFARSFSGLFSRNPKLDDDLLDEIETALITADVGVGATTELIESLRKRMKAREFADARALLAALRADLLAMLLPVAQPLQIDTNAKPFVLLTVGVNGVGKTTTIGKLAKRFKDENRPLMLAAGDTFRAAAVAQLQAWGDRNGVPVVAQGQNADAASVAFDALQAAKARGTQVLIADTAGRLHTQQGLMAELGKIKRVIQKIDVNAPHEVLMVIDGTTGQNALSQLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFGIPIRFAGIGERPEDLRVFDAEAFVDALLPGSLGA
SIO_010081: HIV01_RS01200
subclass of: SO_0000673
so part of: HIV01_RS01200
location: complement(229861..231099)
location: region:229861-231099:-1
so has part: feature:229861-231099:-1:exon

WP_200604466.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:229861-231099:-1:exon

HIV01_RS01205
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rsmD
locus tag: HIV01_RS01205
old locus tag: HIV01_001205
so part of: sequence
location: 231163..231765
location: region:231163-231765:1
so has part: feature:231163-231765:1:exon
subclass of: SO_0000010

position:231163:1
position: 231163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:231765:1
position: 231765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231163-231765:1:exon

HIV01_RS01205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rsmD
locus tag: HIV01_RS01205
old locus tag: HIV01_001205
EC number: 2.1.1.171
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010372373.1
GO function: GO:0052913 - 16S rRNA (guanine(966)-N(2))-methyltransferase activity [Evidence IEA]
GO process: GO:0031167 - rRNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
translation: MNKPPRRLPGTVAMPATAAAGKVRLIGGRWRGTRLTVPAVDGLRPTSDRVRETLFNWLMPMLPGARVLDVFAGSGALGMEALSRGAASAVLVERDAGLANALRELAARLPGGEAATVVQGDALSWLAGQAGAGFDLAFLDPPFAAGLWDKALPLVVATLGPDAWLYVEAPHDAAPQLPPDWRLHREGRTREVRFALYKRS
SIO_010081: HIV01_RS01205
subclass of: SO_0000673
so part of: HIV01_RS01205
location: 231163..231765
location: region:231163-231765:1
so has part: feature:231163-231765:1:exon

WP_200604467.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:231163-231765:1:exon

HIV01_RS01210
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: coaD
locus tag: HIV01_RS01210
old locus tag: HIV01_001210
so part of: sequence
location: 231882..232385
location: region:231882-232385:1
so has part: feature:231882-232385:1:exon
subclass of: SO_0000010

position:231882:1
position: 231882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:232385:1
position: 232385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231882-232385:1:exon

HIV01_RS01210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: coaD
locus tag: HIV01_RS01210
old locus tag: HIV01_001210
EC number: 2.7.7.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004085275.1
GO function: GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]
GO process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pantetheine-phosphate adenylyltransferase
translation: MTVARNRIAVYPGTFDPITNGHIDLVDRAAPLFERLIIGVAESPGKSPALPLDLRVELARKAVAHHANVEVRGFDSLLAHFVDQVGGGVLLRGLRAVSDFEYEFQLASMNRHLIPEVETLFLTPAEQYGFISSSLVREISRLGGDVSGFVPPAVAAALQAQWQRNHR
SIO_010081: HIV01_RS01210
subclass of: SO_0000673
so part of: HIV01_RS01210
location: 231882..232385
location: region:231882-232385:1
so has part: feature:231882-232385:1:exon

WP_158733222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:231882-232385:1:exon

HIV01_RS01215
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01215
old locus tag: HIV01_001215
so part of: sequence
location: 232480..232968
location: region:232480-232968:1
so has part: feature:232480-232968:1:exon
subclass of: SO_0000010

position:232480:1
position: 232480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:232968:1
position: 232968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232480-232968:1:exon

HIV01_RS01215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01215
old locus tag: HIV01_001215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014160099.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTTTRLLLLACLSMPLLVACNKGEDKPAVVEAPLVAPTTNEGAAWDTYLTEVVKRNIEGATNVYLYTLPDPAGADFEGEYARQLEKAQGDVARGGVEGTLLAFGSQNSPKSADLAIASFAGAQAGTMKGVRVMFIGASADSERVKAAVEPSGAKYEFIEAK
SIO_010081: HIV01_RS01215
subclass of: SO_0000673
so part of: HIV01_RS01215
location: 232480..232968
location: region:232480-232968:1
so has part: feature:232480-232968:1:exon

WP_200604468.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:232480-232968:1:exon

HIV01_RS01220
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01220
old locus tag: HIV01_001220
so part of: sequence
location: 233171..233425
location: region:233171-233425:1
so has part: feature:233171-233425:1:exon
subclass of: SO_0000010

position:233171:1
position: 233171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:233425:1
position: 233425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:233171-233425:1:exon

HIV01_RS01220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01220
old locus tag: HIV01_001220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014502923.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YfhL family 4Fe-4S dicluster ferredoxin
translation: MSLKINELCVNCDVCEPACPNQAISQGETIYVIDPARCTECVGHFDEPQCVVVCPVECIDPDADHPETNEQLLAKLARLQQELK
SIO_010081: HIV01_RS01220
subclass of: SO_0000673
so part of: HIV01_RS01220
location: 233171..233425
location: region:233171-233425:1
so has part: feature:233171-233425:1:exon

WP_200604469.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:233171-233425:1:exon

HIV01_RS01225
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: ggt
locus tag: HIV01_RS01225
old locus tag: HIV01_001225
so part of: sequence
location: 233437..235146
location: region:233437-235146:1
so has part: feature:233437-235146:1:exon
subclass of: SO_0000010

position:233437:1
position: 233437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:235146:1
position: 235146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:233437-235146:1:exon

HIV01_RS01225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: ggt
locus tag: HIV01_RS01225
old locus tag: HIV01_001225
EC number: 2.3.2.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010376601.1
GO process: GO:0006750 - glutathione biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: gamma-glutamyltransferase
translation: MRALVSASVLSAGLLLTATLPLHAAQKAARPAGHPPGVAIASAHALATDAGMEMIRAGGNAFDAAVAVSATLAVVEPISSGIGGGGFFLLHDAKSGKDVFVDARETAVAASTPAAYLDDKGELNRDRATNGPWSAGIPGLPAALVHVSGKYGRLPLKTTLAPAIRIAREGFEVYPRLERGYGSRREVMERYRGTREVFLADGSPLKAGEILKQPDLARTLELLADKGFDGFYHGEVAAKLLAAVKEEGGQWRADELAGYRVKEREPLHFQYRDWTVTTAPPPSSGGVALAEMLQMLSGWDLSKLDQAHRTHLITEAMRRAFRDRTIYLGDPDFVKMPLARLTSVDYAAGLRATIHPEKATPSDLLPGQPAPLEDDETTHFSIIDAAGNRVSTTQTVNLLYGSGMVAPGTGVLLNNEMDDFALRPGTPNAFGVMGFAANAPAAGKRMLSSMTPSFIESKDKLAVIGAPGGSRIITEVLLGILGYDAGLGAQEVAALPRIHHQWMPDVISAEKGTLDAQTVTALEAMGHKVNAGENTWGNLQTVSWDKRSNVLEAGTDPRNPVGKGAVEGR
SIO_010081: HIV01_RS01225
subclass of: SO_0000673
so part of: HIV01_RS01225
location: 233437..235146
location: region:233437-235146:1
so has part: feature:233437-235146:1:exon

WP_245157026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:233437-235146:1:exon

HIV01_RS01230
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01230
old locus tag: HIV01_001230
so part of: sequence
location: 235350..236240
location: region:235350-236240:1
so has part: feature:235350-236240:1:exon
subclass of: SO_0000010

position:235350:1
position: 235350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:236240:1
position: 236240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235350-236240:1:exon

HIV01_RS01230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01230
old locus tag: HIV01_001230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017908327.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MBL fold metallo-hydrolase
translation: MKLWSILGNSQKLDGGAMFGNAPRAMWAKWSAPDEQNRIELACRALLASPLAGKTVLFETGIGAFFEPKLRERYGVVEDQHVLVQSLAAAGFAPEDVDVVVLSHLHFDHAGGLLAPWKEGEAPKLLFPNATYVVGREHYERALNPHPRDRASFIPELPGLLEATGRLELVDGEYSRTLGKTVRFHYSDGHTPGLMLAEIVGPDQVDGETHGGVVFCADLIPGRPWVHVPITMGYDRNAELLIDEKKAFLADKLRRNVHLFFTHDPQCALAQVTQDDKGKFGTTHEVAELQARALGA
SIO_010081: HIV01_RS01230
subclass of: SO_0000673
so part of: HIV01_RS01230
location: 235350..236240
location: region:235350-236240:1
so has part: feature:235350-236240:1:exon

WP_200604471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:235350-236240:1:exon

HIV01_RS01235
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01235
old locus tag: HIV01_001235
so part of: sequence
location: 236237..236983
location: region:236237-236983:1
so has part: feature:236237-236983:1:exon
subclass of: SO_0000010

position:236237:1
position: 236237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:236983:1
position: 236983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236237-236983:1:exon

HIV01_RS01235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01235
old locus tag: HIV01_001235
inference: COORDINATES: protein motif:HMM:NF019404.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TMEM43 family protein
translation: MTRPGATAWLSLACALAMGAACCGKAWAQPAVVDDSLDPPQAGKALRDRDFGVGTRGFGLDRRVEMYQWRADRDAYTRVWNTAAIDSSHFAPGHANPKKLPLDNRRWWSDDATLEGKPIDLAVLQTLGQWRVFRPNFSRLPANLAASFQPEGDGLGSAENPLDPQIGDIRITWRELSLPPLEGKVELRGDRWVLSPEAAAQALSAERASTVVELPPGTDQRLLPWLLGAAAMLLVAALVWRRVRRRRG
SIO_010081: HIV01_RS01235
subclass of: SO_0000673
so part of: HIV01_RS01235
location: 236237..236983
location: region:236237-236983:1
so has part: feature:236237-236983:1:exon

WP_200604472.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:236237-236983:1:exon

HIV01_RS01240
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: upp
locus tag: HIV01_RS01240
old locus tag: HIV01_001240
so part of: sequence
location: complement(237024..237659)
location: region:237024-237659:-1
so has part: feature:237024-237659:-1:exon
subclass of: SO_0000010

position:237024:-1
position: 237024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:237659:-1
position: 237659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237024-237659:-1:exon

HIV01_RS01240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: upp
locus tag: HIV01_RS01240
old locus tag: HIV01_001240
EC number: 2.4.2.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019398393.1
GO function: GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
GO process: GO:0009116 - nucleoside metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: uracil phosphoribosyltransferase
translation: MKIIEVRHPLVQHKLGLMRLAGISTKEFRELASEVATLLTYEATADLETEEVMVEGWAGPVKTRRIKGAKVTLVPILRAGLGMLPGVLELIPAAKVGVVGLQRDERTLEPVGYYEKLTGRMDERTALILDPMLATGGTLVATVDMLKAAGCKRIKGLFLVAAPEGLRVLESRHPDVEVYTASIDDRLNDVGYILPGLGDAGDKIFGTRHNG
SIO_010081: HIV01_RS01240
subclass of: SO_0000673
so part of: HIV01_RS01240
location: complement(237024..237659)
location: region:237024-237659:-1
so has part: feature:237024-237659:-1:exon

WP_200604473.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:237024-237659:-1:exon

HIV01_RS01245
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01245
old locus tag: HIV01_001245
so part of: sequence
location: 237784..238578
location: region:237784-238578:1
so has part: feature:237784-238578:1:exon
subclass of: SO_0000010

position:237784:1
position: 237784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:238578:1
position: 238578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237784-238578:1:exon

HIV01_RS01245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01245
old locus tag: HIV01_001245
inference: COORDINATES: protein motif:HMM:NF024880.2
GO function: GO:0008168 - methyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methyltransferase domain-containing protein
translation: MSNPAVTYEREMVPVLFRPWVGALLDLAQPAPGEHLLDLACGTGIVARLAAPRVAPDGRVVGVDLNPDMLGVAQVQGALEGLDIEWKQGRLEVLPFAEAEFDLALCQHGLQFVPDRAAALGEARRVLRDDGRLALAVWCGLDHHPFWSRFNDVLVELIGIPALASPFALGEASELESLLRDAGFRDISIEARAMPAAFPDPDTFVAMEVDVIAAAVPATQHLDAKARAELTEAAQARMAGAIREQMCDGHVVVPMHSHLVLARM
SIO_010081: HIV01_RS01245
subclass of: SO_0000673
so part of: HIV01_RS01245
location: 237784..238578
location: region:237784-238578:1
so has part: feature:237784-238578:1:exon

WP_200604474.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:237784-238578:1:exon

HIV01_RS01250
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01250
old locus tag: HIV01_001250
so part of: sequence
location: complement(238635..240962)
location: region:238635-240962:-1
so has part: feature:238635-240962:-1:exon
subclass of: SO_0000010

position:238635:-1
position: 238635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:240962:-1
position: 240962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:238635-240962:-1:exon

HIV01_RS01250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01250
old locus tag: HIV01_001250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014160104.1
GO function: GO:0015267 - channel activity [Evidence IEA]
GO process: GO:0015891 - siderophore transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TonB-dependent receptor
translation: MKRNLLSRALSRALFVAVLAPVSFTAVADDGGDPAPDPKQLDAVVVQADIAYRNRTDAVAPVLSYDLEYFQRFEPLTVGDMLKRVPSVAFVSDVLEYDGAQLRGLDPGYTQILINGKKVPGAGNDRSFFVDRIPAELVERIEIVRSASANRSGDAVAGALNIVLRDAYEFDGSYVRGGVMHFDDGKYKNTYGAVSSGEVGGGRLLGGFNVQGRYNPKVKRSDRFDEPGGDFVDREDQADTRDGTDYSANVSYTHDIGSGRLSLDGFYVRTDRDETEHSLEYNDPTSSSRDNLLSVNDQFENIKQDNWSFGANYEFDMLGGRTELDLDYARFDDDTMATEEETGYDDEDTPPSFDGREGTRTLSDISDDELGFKAAHKRELGNAKVEFGVDYLDKQRDTGLQIAEVESDDEDVALPAYEDFEGMASRIDETRIDPYLMFSGASGALAWEAGLRYETTDVDVRADDTAASNDYSTVLPSAHLKWDLTADDRISLSLARTVRRPNFDQILPLTLEEEFGDNDFVGNPLLEPERAWGLDLGYERRLGQRGVFGVNAFYRDIQDLIETVNTGEPSSTALGDFEDEVEEFLDENPGANENTPGYPQFDPDSFVYTARNVGDGYVYGIEFDLSTPLTVLGLPDTGVFVNYSWLDSSVDDEFGERRFNNQARYVYNVGFIQNLPDWGVSFGASYRRQGDAYSRIVSEEVTTTYEGDLEVFVEKRFGDRMSVRLTGSNLLDASKDEAFNKFDNAADQIDRDFDEYELERETAGPVYQLIARYSF
SIO_010081: HIV01_RS01250
subclass of: SO_0000673
so part of: HIV01_RS01250
location: complement(238635..240962)
location: region:238635-240962:-1
so has part: feature:238635-240962:-1:exon

WP_200604475.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:238635-240962:-1:exon

HIV01_RS01255
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01255
old locus tag: HIV01_001255
pseudo: true
so part of: sequence
location: <241265..242278
location: region:241265-242278:1
so has part: feature:241265-242278:1:exon
subclass of: SO_0000010

position:241265:1
position: 241265
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:242278:1
position: 242278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241265-242278:1:exon

HIV01_RS01255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01255
old locus tag: HIV01_001255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010376612.1
GO function: GO:0016158 - 3-phytase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: phytase
SIO_010081: HIV01_RS01255
subclass of: SO_0000673
so part of: HIV01_RS01255
location: <241265..242278
location: region:241265-242278:1
so has part: feature:241265-242278:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:241265-242278:1:exon

HIV01_RS01260
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01260
old locus tag: HIV01_001260
so part of: sequence
location: complement(242448..243944)
location: region:242448-243944:-1
so has part: feature:242448-243944:-1:exon
subclass of: SO_0000010

position:242448:-1
position: 242448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:243944:-1
position: 243944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242448-243944:-1:exon

HIV01_RS01260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01260
old locus tag: HIV01_001260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012438074.1
GO function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
translation: MAVLDRLAPLRAHKGLRRTQGLDDATITRFAASHAELIEAIEAADQEYQRLKGDFAELLDLDEEAQIQAVLAGYINFYADDAVNPYVALAARGPWVVTLKGAVLHDSGGYGMLGFGHAPKSVIAAMAKPQAMANIMTPSLSQLRFDRALRAAIGAARGGCPYEKFLCLNSGSESVSLASRIADVNTKLMTDPGGRHAGRAIKRVVVKGSFHGRTERPALYSDSSRKTYMQHLASFRGEDTLLTVEPYDVDALKKIFADADANGWFIEAMFLEPVMGEGDPGRGVPPAFYAAARELTRAHGSLLLVDSIQAGLRAHGVLSVIDYPGFEQLDPPDMETYSKALNAGQYPLSVLAVGKRAAELYKKGLYGNTMTSNPRALDVACAVLEQVTPALQENIRARGVEALEKLEKLKGELGGLITKVQGTGLLFSCELAPQFKCYGARSTEEWLREHGIGVIHGGVNSLRFTPTFTITSEEIDLLVAMVAKSLKEGPRAEQAVAA
SIO_010081: HIV01_RS01260
subclass of: SO_0000673
so part of: HIV01_RS01260
location: complement(242448..243944)
location: region:242448-243944:-1
so has part: feature:242448-243944:-1:exon

WP_200604476.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:242448-243944:-1:exon

HIV01_RS01265
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01265
old locus tag: HIV01_001265
so part of: sequence
location: 244063..244494
location: region:244063-244494:1
so has part: feature:244063-244494:1:exon
subclass of: SO_0000010

position:244063:1
position: 244063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:244494:1
position: 244494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:244063-244494:1:exon

HIV01_RS01265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01265
old locus tag: HIV01_001265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003489775.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Lrp/AsnC family transcriptional regulator
translation: MKITDADQQLLSVLRENARASTADIARRLKLSRTTVHSRIERLERQGVIDGYTVRVHDEAERGHIRAHIMVTVLPKQMASVVTVLHGMPEVRALHSVSGPFDLIALGVVPTVEAMDELTDRIGAIDGVERTTSAIILSAKFER
SIO_010081: HIV01_RS01265
subclass of: SO_0000673
so part of: HIV01_RS01265
location: 244063..244494
location: region:244063-244494:1
so has part: feature:244063-244494:1:exon

WP_200606279.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:244063-244494:1:exon

HIV01_RS01270
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: queA
locus tag: HIV01_RS01270
old locus tag: HIV01_001270
so part of: sequence
location: 244589..245647
location: region:244589-245647:1
so has part: feature:244589-245647:1:exon
subclass of: SO_0000010

position:244589:1
position: 244589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:245647:1
position: 245647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:244589-245647:1:exon

HIV01_RS01270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: queA
locus tag: HIV01_RS01270
old locus tag: HIV01_001270
EC number: 2.4.99.17
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019183143.1
GO function: GO:0016853 - isomerase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
translation: MKKSDFHYDLPPELIAQAPLPERSASRLLVVPPTATFEFQDRIFRDLPDLLAPGDLLVFNDTRVIPARLYGQKTSGGRVEILIERLLGGHEVRAQLGVSKSPKAGARIMLDAGGEAEVLGRDGEFYRLRFDVPESLEQWLLHAGRLPLPPYIQREAGSDDDTRYQTVFAREVGAVAAPTAGLHFDEALLQQLSDRGVQFGHVTLHVGAGTFQPVRVDDLGQHVMHSEWLNVGAALIEQIQRTRAAGGRVIAVGTTVVRALESAMRGNDAGERELQPYAGETRLFILPGYRIRSVDALITNFHLPESTLLMLVSAFAGKARMFAAYDHAIASRYRFFSYGDAMLLFPAPEESA
SIO_010081: HIV01_RS01270
subclass of: SO_0000673
so part of: HIV01_RS01270
location: 244589..245647
location: region:244589-245647:1
so has part: feature:244589-245647:1:exon

WP_200604477.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:244589-245647:1:exon

HIV01_RS01275
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: tgt
locus tag: HIV01_RS01275
old locus tag: HIV01_001275
so part of: sequence
location: 245644..246762
location: region:245644-246762:1
so has part: feature:245644-246762:1:exon
subclass of: SO_0000010

position:245644:1
position: 245644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:246762:1
position: 246762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245644-246762:1:exon

HIV01_RS01275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: tgt
locus tag: HIV01_RS01275
old locus tag: HIV01_001275
EC number: 2.4.2.29
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009599636.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA guanosine(34) transglycosylase Tgt
translation: MSRMSFDLLATDGAARRGRLTFPRGTVETPAFMPVGTYGSVKGVMPEQIRELGAEIILGNTFHLYLRPGLDVIGDHGGLHGFGRWSGPILTDSGGFQVFSLAHKRKITEQGVTFAAPTDGSKVFLGPEESMHIQKVLDSDVVMIFDECTPYPATEEVARKSMELSLRWAERSKKAHEGNDAALFGIVQGGVHPALRDSSAEGLKSIGFDGYAIGGPAVGEPEAERNHMLEHTCPQLPADRPRYLMGVGRPEDLVEGVARGIDMFDCVMPTRNARNGHYFTSFGTVRVRNAKYERDLRPIEEGCDCYACRNGFSRSYLRHLDRCNEMLAPMLGTLHNLRYYQRLMAQMRDAIARGTFSAFRESFYAARAAEPV
SIO_010081: HIV01_RS01275
subclass of: SO_0000673
so part of: HIV01_RS01275
location: 245644..246762
location: region:245644-246762:1
so has part: feature:245644-246762:1:exon

WP_207527046.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:245644-246762:1:exon

HIV01_RS01280
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: yajC
locus tag: HIV01_RS01280
old locus tag: HIV01_001280
so part of: sequence
location: 246886..247227
location: region:246886-247227:1
so has part: feature:246886-247227:1:exon
subclass of: SO_0000010

position:246886:1
position: 246886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:247227:1
position: 247227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246886-247227:1:exon

HIV01_RS01280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: yajC
locus tag: HIV01_RS01280
old locus tag: HIV01_001280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017910689.1
GO component: GO:0005886 - plasma membrane [Evidence IEA]
GO function: GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO process: GO:0009306 - protein secretion [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: preprotein translocase subunit YajC
translation: MNLLDLVVSPAYAQAAAPAGGGGFGMSLLFPILLIGVMYFLMIRPQMKRQKEHRAMLEKLAKGDEVLTNGGIAGTVSDIGENFITVEIADNVRIRVQKGAIANVLPKGTLKSA
SIO_010081: HIV01_RS01280
subclass of: SO_0000673
so part of: HIV01_RS01280
location: 246886..247227
location: region:246886-247227:1
so has part: feature:246886-247227:1:exon

WP_200604479.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:246886-247227:1:exon

HIV01_RS01285
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: secD
locus tag: HIV01_RS01285
old locus tag: HIV01_001285
so part of: sequence
location: 247286..249151
location: region:247286-249151:1
so has part: feature:247286-249151:1:exon
subclass of: SO_0000010

position:247286:1
position: 247286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:249151:1
position: 249151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247286-249151:1:exon

HIV01_RS01285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: secD
locus tag: HIV01_RS01285
old locus tag: HIV01_001285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005409258.1
GO component: GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
GO function: GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO process: GO:0043952 - protein transport by the Sec complex [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein translocase subunit SecD
translation: MLTYARWKYFVILIVLLLSALYALPNIYPQDPSVQVTASRGAKIDPALSAQVSTMLKQGGVSPKSVELDNGNLLVRLNNPDQQIKANDVLREKLGSNYVVALNLASTVPNWLEKIGAKPMLLGLDLQGGVHFLMQVDQKAALDKRMDATAEDVRVSLRDGRVRYESVERRGANSIVATLASPADAEKARVEIAKSQPNLLLDVQGNTLTVQISEAEMQRMAVEAIEQNVGTLRNRINALGVSEPIIQRQGSDRIVVQLPGVQDTAQAKRILGATATLEYRGVVEGNPYDAVSTGTVPAGARVYYRRELGPDGKPMPVLLNKRVIASGDQLVGATSMMDPQTGTPAVSVRLNGVGGQRMFDYTTEHVGKPMAVVYIERIPEVRMVDGKEVRTTKINEEVISVANINGVFGKEFQTTGLDSSKEAADLALLLRSGSLAAPMDFIEERIVGPSLGRENIERGLTAVMYSFAFALVFFLFYYRVFGIITCLALLLNMLMLIAVMSLFNATLTLPGLAGIALTVGMSVDANVLINERIREELRLGLPPQTAIAEGYERASGTIADANLTAILAGVALFAFGTGPVKGFAVSLIVGIATSMYTAVGVSRAIATLIYGGRRKIKTIWI
SIO_010081: HIV01_RS01285
subclass of: SO_0000673
so part of: HIV01_RS01285
location: 247286..249151
location: region:247286-249151:1
so has part: feature:247286-249151:1:exon

WP_200604480.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:247286-249151:1:exon

HIV01_RS01290
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: secF
locus tag: HIV01_RS01290
old locus tag: HIV01_001290
so part of: sequence
location: 249168..250130
location: region:249168-250130:1
so has part: feature:249168-250130:1:exon
subclass of: SO_0000010

position:249168:1
position: 249168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250130:1
position: 250130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:249168-250130:1:exon

HIV01_RS01290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: secF
locus tag: HIV01_RS01290
old locus tag: HIV01_001290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012438079.1
GO component: GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
GO function: GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO process: GO:0043952 - protein transport by the Sec complex [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein translocase subunit SecF
translation: MKPFNVFPYDSNINFIRLRWLSLGIALAMLLVAVGGMFVKGFNFALDFTGGAVTEMRFEKPVDVDDVRERLDRAGYEGAQVQSFGSGNDLLIRLQPKQAAAGAEDKGNTTASDVQNALAFEGNPGKVLRSEVVGPQVGKDLAINGLWALIFVVVGFLIYISFRFEKKFAIAAVLTTLHDVVVVTGWFALSGHEFDLTVLAGVLSVMGFSINDTIVVFDRVRENFRSMRASPEEILNKSINQTLSRTVITSFVAFLTVFALYLYGGGSLEGMAESQMIGIIIGTLSSIFVACPLLTIGFLKVTKQDLMPKAKDEAALARRP
SIO_010081: HIV01_RS01290
subclass of: SO_0000673
so part of: HIV01_RS01290
location: 249168..250130
location: region:249168-250130:1
so has part: feature:249168-250130:1:exon

WP_200604481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:249168-250130:1:exon

HIV01_RS01295
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01295
old locus tag: HIV01_001295
so part of: sequence
location: complement(250673..251491)
location: region:250673-251491:-1
so has part: feature:250673-251491:-1:exon
subclass of: SO_0000010

position:250673:-1
position: 250673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251491:-1
position: 251491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250673-251491:-1:exon

HIV01_RS01295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01295
old locus tag: HIV01_001295
EC number: 3.1.3.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013535537.1
GO function: GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO process: GO:0006020 - inositol metabolic process [Evidence IEA]; GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: inositol monophosphatase family protein
translation: MQKPAVTLMVKAARAAGNVLLRHMNKLDALNVVEKDRMDYASEVDSLAEKEIIKEFRRATPDYAILGEESGPIGNSRFTWVIDPLDGTSNYLHGIPHFCVSIALVENGEPVHGVIFDPLRNELFTTSRGSGATLNDRKIRVADRKDLNGAMLITGFPPRERARTSAHLKCIDTLLTEAEDIRRTGSAALDLAYVACGRADAYFEAGVKPWDIAAGALLVREAGGKVVDFRGRSTGPMDTRGQMPRQLVAGNLKICDALQSKIVNTGYASAFD
SIO_010081: HIV01_RS01295
subclass of: SO_0000673
so part of: HIV01_RS01295
location: complement(250673..251491)
location: region:250673-251491:-1
so has part: feature:250673-251491:-1:exon

WP_200604482.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:250673-251491:-1:exon

HIV01_RS01300
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01300
old locus tag: HIV01_001300
so part of: sequence
location: 251609..252406
location: region:251609-252406:1
so has part: feature:251609-252406:1:exon
subclass of: SO_0000010

position:251609:1
position: 251609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:252406:1
position: 252406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:251609-252406:1:exon

HIV01_RS01300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01300
old locus tag: HIV01_001300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006379808.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA methyltransferase
translation: MSDPVPSPSNHVPGPADRLRIVLVGTQHPGNIGSAARAMKTMGLSRLVLVAPEKAPSVESYALAAGADDVLAGASTCATLAEAVADCRLVLGCTARSRRVALEELLPRDAAARAVGEAAAGAEVALVFGRERTGLSNDELQLCHASVHIPANPDYSSLNLAAAVQVLSYELRLAVLAAAAPVGSDGEGPERREPPASHAEMEGFFAQLGDTLDAIDFHKGRAPESAMRKLRRLYLRAALDSREVRILRGILADAQRMASIARKGD
SIO_010081: HIV01_RS01300
subclass of: SO_0000673
so part of: HIV01_RS01300
location: 251609..252406
location: region:251609-252406:1
so has part: feature:251609-252406:1:exon

WP_200604483.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:251609-252406:1:exon

HIV01_RS01305
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01305
old locus tag: HIV01_001305
pseudo: true
so part of: sequence
location: 252620..253474
location: region:252620-253474:1
so has part: feature:252620-253474:1:exon
subclass of: SO_0000010

position:252620:1
position: 252620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:253474:1
position: 253474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:252620-253474:1:exon

HIV01_RS01305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01305
old locus tag: HIV01_001305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011037419.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: phosphate/phosphite/phosphonate ABC transporter substrate-binding protein
SIO_010081: HIV01_RS01305
subclass of: SO_0000673
so part of: HIV01_RS01305
location: 252620..253474
location: region:252620-253474:1
so has part: feature:252620-253474:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:252620-253474:1:exon

HIV01_RS01310
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01310
old locus tag: HIV01_001310
so part of: sequence
location: 253471..255603
location: region:253471-255603:1
so has part: feature:253471-255603:1:exon
subclass of: SO_0000010

position:253471:1
position: 253471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255603:1
position: 255603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:253471-255603:1:exon

HIV01_RS01310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01310
old locus tag: HIV01_001310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017917631.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GGDEF domain-containing phosphodiesterase
translation: MNLRFGLQAKFMLLMGIALLVVLALVALLFNRQERMRMEVEGVSRQTMRTMMGESLRRQGEGAVAQLAATLTNPMYYSDLDAIGVLSRATLRNRDVRYVVVYDDAGQVLHDGSEAIANYGKRMDDAMAGKVIASRALLTQCDEKVMDVSAPIMIGQQRIGGVRIGYDLSAMRGYQDQAVGQLRGRLDALSQRYVIWIGLLGAGMLAFGALSLWLIQRLLVRPIRELAESARAIEAGRFDTATPIDNRNDEVGDLMLAFDRMSRSLARHDREIRRMAYTDALTGLANRLAFRESLDQRLLQLHGAGCQLALLFADIDDFKRVNDTLGHDAGDDVLLQCARRIEHTVQRIGGDQAMLARFGGDEFVILIQADHDPNADVRKIATHLAETLVTELGEPILVQDRQVFLGTSIGITLFPEDASGATSLMKNGDIAMYQAKVAGKNCFRFYSRAMDQAVERRVHLEHELRGAWDRGELSLAYQPVFRLVDGAMIGAEALLRWKHPELGVVAPSVFIDVAEQSGLIEVLGPQVLRQACADAVRWQESRKGEEPLFLAVNVSPRQLRNGDLPDVVEASLRETGLPADLLHLELTETAVIGDERHASSLLSQLRGMGVKVWLDDFGTGFSGLSHLRRVPVDGVKIDRSFVADVLRDPDDLALTTAIIAMAHSLGILVVAEGVEKEGQYAILRERGCDFAQGYWLGHPVTADEFMAVAC
SIO_010081: HIV01_RS01310
subclass of: SO_0000673
so part of: HIV01_RS01310
location: 253471..255603
location: region:253471-255603:1
so has part: feature:253471-255603:1:exon

WP_200604484.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:253471-255603:1:exon

HIV01_RS01315
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01315
old locus tag: HIV01_001315
so part of: sequence
location: complement(255626..256261)
location: region:255626-256261:-1
so has part: feature:255626-256261:-1:exon
subclass of: SO_0000010

position:255626:-1
position: 255626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:256261:-1
position: 256261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:255626-256261:-1:exon

HIV01_RS01315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01315
old locus tag: HIV01_001315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013535534.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: exopolysaccharide biosynthesis protein
translation: MTQRARQERPHEAGTRALLDGFAEGDPNEQLRMSDVLHGLGDRSFGMLLFVSTIPAFIPIPGLGGAISGPLVILIGLQQLFGMREPWLPAFLARRGPHRSAMARFRDLLAPWLTRLEKLVRPRATGMLDHRLADFFTGLLLVLLGLLLSLPIPFTNFLFGGLLVVFALALLERDGYLMAIAWVAGVIAIAVFGILSGSLAAAAARWIDMLM
SIO_010081: HIV01_RS01315
subclass of: SO_0000673
so part of: HIV01_RS01315
location: complement(255626..256261)
location: region:255626-256261:-1
so has part: feature:255626-256261:-1:exon

WP_200604485.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:255626-256261:-1:exon

HIV01_RS01320
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01320
old locus tag: HIV01_001320
so part of: sequence
location: complement(256245..257588)
location: region:256245-257588:-1
so has part: feature:256245-257588:-1:exon
subclass of: SO_0000010

position:256245:-1
position: 256245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:257588:-1
position: 257588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:256245-257588:-1:exon

HIV01_RS01320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01320
old locus tag: HIV01_001320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004426902.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hemolysin family protein
translation: MLELLTVIALIILNAFFALSEMALMTSRKLRLKQMAEDPVHPSRGARTALLLAEHPDNLLSTVQVGITLIGVLTGVFGGEAIGLAIAGWLHDLWPAAAKYSRAIGIGTAVSLITAAQVIFGELIPKRLALTNPERIASAIALPLYGLSRAARPVVATLGAINRLVLRMLGIKDDARSAISEEEIRLLVSESHEQGVIDADERKMMNRVLSLGDRTAESLMTPRTRIAWLDASVDFAENLAAMRETPFSRYPVYRGNDSEVLGTLEVKALLDRLDEKAPDLFRHLREPLFVSESTHAMKLLEIFREEQQSLALVVDEYGDISGMVTVGDLMDAVVGRIHSSTVHSGEAEEDSSPVVERADGSYLLDGSLAIEDLRELIGGGRLPDEDEHDFHTAAGMVIAHFGRIPYVGEHFDWNQWRIEVVDLDGPRIDKLLLQRIEQEPVPDDTAG
SIO_010081: HIV01_RS01320
subclass of: SO_0000673
so part of: HIV01_RS01320
location: complement(256245..257588)
location: region:256245-257588:-1
so has part: feature:256245-257588:-1:exon

WP_200604486.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:256245-257588:-1:exon

HIV01_RS01325
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01325
old locus tag: HIV01_001325
so part of: sequence
location: 257847..258473
location: region:257847-258473:1
so has part: feature:257847-258473:1:exon
subclass of: SO_0000010

position:257847:1
position: 257847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:258473:1
position: 258473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:257847-258473:1:exon

HIV01_RS01325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01325
old locus tag: HIV01_001325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005992439.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF47 family protein
translation: MFSLQTIFGQGNQFYTLLEEAAVAAHDSTKALHAMLKAADRQPALDAFKLARQRERDASDKISQELVNSFITPIEREDIEALGTALYKIPKQVEKFADRYSLATRHLEHIDFAPRAAMLEQASAVVVQMVHQLRHLKLEPMKALNDQLRSIENEADRLMLELYRDIYSGRLDNLQMFLLKEFFEILEKAIDRCREAGVVAYEIVLKNS
SIO_010081: HIV01_RS01325
subclass of: SO_0000673
so part of: HIV01_RS01325
location: 257847..258473
location: region:257847-258473:1
so has part: feature:257847-258473:1:exon

WP_200604487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:257847-258473:1:exon

HIV01_RS01330
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01330
old locus tag: HIV01_001330
so part of: sequence
location: 258485..259612
location: region:258485-259612:1
so has part: feature:258485-259612:1:exon
subclass of: SO_0000010

position:258485:1
position: 258485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:259612:1
position: 259612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258485-259612:1:exon

HIV01_RS01330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01330
old locus tag: HIV01_001330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013535531.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0006817 - phosphate ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: inorganic phosphate transporter
translation: MLTLVLVVVFAALAFEYINGFHDTANSIATVVATKVLSPMQAVAMAATTNLLGALWGTAVAKTIASGLLDNGVVQVTSQLILCALLGAIVWNLITWWKGLPSSSSHALIGGLCGAAVAAASNNFHAVIWSQPADPWYKSAGVLWKVVVPMFSSPLLGFASGFLVMGVLFAIISAMASSGGFLARLARPRWVNAFFGKAQLVSAAGMGFAHGMNDAQKTMGIIALALVGAQSAGTLDNLPSWLAFLHPSREALENNDIDTWIKFTCAIVMAAGTAAGGWRIIKTLGHKLVKLHPINGFAAETSAAAVIMAASSLGIPVSTTHNISSAIMGVGTAKRFNAIKWTVVEKMIWAWILTIPAAGGIAYMFFELFRAMGWA
SIO_010081: HIV01_RS01330
subclass of: SO_0000673
so part of: HIV01_RS01330
location: 258485..259612
location: region:258485-259612:1
so has part: feature:258485-259612:1:exon

WP_200604488.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:258485-259612:1:exon

HIV01_RS01335
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01335
old locus tag: HIV01_001335
so part of: sequence
location: complement(259631..260041)
location: region:259631-260041:-1
so has part: feature:259631-260041:-1:exon
subclass of: SO_0000010

position:259631:-1
position: 259631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:260041:-1
position: 260041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:259631-260041:-1:exon

HIV01_RS01335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01335
old locus tag: HIV01_001335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007511542.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRNFESIRRHLKAADFNTTEHGADLICIELSLEQGTRHQAIFLSELDDDDGRPYLRVSTAVSPITGLDARRALIFNWQSRVGYLAIGDLDGVPHLQLCENRPYEGLDAAEIDRLVLEIGGLGDRMERSLSAGGDLF
SIO_010081: HIV01_RS01335
subclass of: SO_0000673
so part of: HIV01_RS01335
location: complement(259631..260041)
location: region:259631-260041:-1
so has part: feature:259631-260041:-1:exon

WP_200604489.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:259631-260041:-1:exon

HIV01_RS01340
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01340
old locus tag: HIV01_001340
pseudo: true
so part of: sequence
location: 260082..>260420
location: region:260082-260420:1
so has part: feature:260082-260420:1:exon
subclass of: SO_0000010

position:260082:1
position: 260082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:260420:1
position: 260420
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260082-260420:1:exon

HIV01_RS01340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01340
old locus tag: HIV01_001340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016905023.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: MGMT family protein
SIO_010081: HIV01_RS01340
subclass of: SO_0000673
so part of: HIV01_RS01340
location: 260082..>260420
location: region:260082-260420:1
so has part: feature:260082-260420:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:260082-260420:1:exon

HIV01_RS01345
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01345
old locus tag: HIV01_001345
so part of: sequence
location: 260613..261266
location: region:260613-261266:1
so has part: feature:260613-261266:1:exon
subclass of: SO_0000010

position:260613:1
position: 260613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:261266:1
position: 261266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260613-261266:1:exon

HIV01_RS01345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01345
old locus tag: HIV01_001345
EC number: 3.4.21.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011037707.1
GO function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: rhomboid family intramembrane serine protease
translation: MFSNLPPVTKALLIANGLVFLLQWALGDVALAQFMLWPPGGGELDGVGFMPWQLLTYGFMHGNFAHLLFNMLALAMFGAPLEHVWGDRRYLTYYLVCVAGAALCQIGVGMWTMSQGGEAYPTVGASGGIFGLLLAYGLLFPNQRVMLLIPPIPMKARTLVLVYGAIELLLGVTNAMPGVAHFAHLGGMLFGWLLIRYWRGQPPFGKKKGPPKMRVVR
SIO_010081: HIV01_RS01345
subclass of: SO_0000673
so part of: HIV01_RS01345
location: 260613..261266
location: region:260613-261266:1
so has part: feature:260613-261266:1:exon

WP_200604491.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:260613-261266:1:exon

HIV01_RS01350
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01350
old locus tag: HIV01_001350
so part of: sequence
location: complement(261376..263388)
location: region:261376-263388:-1
so has part: feature:261376-263388:-1:exon
subclass of: SO_0000010

position:261376:-1
position: 261376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:263388:-1
position: 263388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:261376-263388:-1:exon

HIV01_RS01350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01350
old locus tag: HIV01_001350
EC number: 3.4.24.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010341282.1
GO function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M13 family metallopeptidase
translation: MNLRPLACALALSLIAGLASPPADAQKKRAAKPKAAAAASACSDFYANANADWLRSNTLLPNVGSVSALEQLGARSRQQQLDLLDAASKAPQGNVQRLLGDFWASGLDEAAVERDGAQPIAPLIGRIDAIKSAKDIPPAIAALHQVGIPVLFNFGADIDLNDFNRHIGYFAQGGLGLPDPAYYTRTDADTRALMGRYSSYVQKILALTGTPQAQLAADAQSVIDLETRIASASRPLLDLRDPRSNFGPVATNTLGKKYKRLQLDQFLKVQGVNDDTVSMANPALFAQLDNLVGSLKPAQWKAYLRWRIGDAMAPYLAKQFRDASFEFRGQVLQGLAAPPSRPQAVLDAITLAAGPMVGHEYAARYLPAATDKRAEEIAAKVRDALGQALDRDTRFSAAAKAEAKAKLDALKIEVGTPNRDLDYTVQPMGRGSFGSNMLIASTWRHREEMKRIGRGNADRRWDVLPQEPSLAYDITQNRLIVTAAMLQPPVFDTGKSAAWLYGSYGALVGHELSHGFDNRGRFVDAKQELRDWWTPAEASAWDALSRRVATQYGGFDYPGLGGTRVNGTQTAGEDIADIAGVELAWAAWHASEPAAAKPASEDFYKGWAALWPQHMTPEAARQRAATSVHAPGRWRANGPLLNQASFGEAFACKAGSGMQLAADQQIRLFP
SIO_010081: HIV01_RS01350
subclass of: SO_0000673
so part of: HIV01_RS01350
location: complement(261376..263388)
location: region:261376-263388:-1
so has part: feature:261376-263388:-1:exon

WP_207527047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:261376-263388:-1:exon

HIV01_RS01355
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01355
old locus tag: HIV01_001355
so part of: sequence
location: 263565..265076
location: region:263565-265076:1
so has part: feature:263565-265076:1:exon
subclass of: SO_0000010

position:263565:1
position: 263565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:265076:1
position: 265076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:263565-265076:1:exon

HIV01_RS01355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01355
old locus tag: HIV01_001355
inference: COORDINATES: protein motif:HMM:NF023568.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha/beta fold hydrolase
translation: MATTPDDDDLDPLPESSLVSRILAVAGTLLRKGAVLVALLVLVVVAVRACQSTQGPSLQPWHTIIPDEPAASEISAGNWQGYLTAEQRMYEQLRRKLDSAMKPGDRTLLNRYYPASLTSPEAFGHDWNRSYVLEPDGAAKGVVVLVHGLTDSPYSMRSVAELYRRHGFIAIAPRMPGHGTVPAGLTKAGRKEWHATLEMTMAEARRRAAGRLPVHLVGYSNGAALAMHYVMARIERGEKRDVDRIVLMSPMIEVNRFARFAGIAGWPALFSRYAKSAWLDVLPEFNAFKYNSFPVRAARESYLVTDELHVVMEEVTAQRRLNQVPPILAFQSVVDDTVGAHAVMTRLFDRLATNGSELVLFDVNRSRVIAPVLRTTATDWVGDVLQDPARRYTLTVVGAASSEDAAVVARTRDVGSDVVKQQPVGVRYPAEVYSLSHIGLPFAQDDALYGNVPSGKAIVQLGALAVRGERNVLVVSQESLSRLSYNPFHAYMLARIAEKIPAK
SIO_010081: HIV01_RS01355
subclass of: SO_0000673
so part of: HIV01_RS01355
location: 263565..265076
location: region:263565-265076:1
so has part: feature:263565-265076:1:exon

WP_200604493.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:263565-265076:1:exon

HIV01_RS01360
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01360
old locus tag: HIV01_001360
so part of: sequence
location: complement(265150..267255)
location: region:265150-267255:-1
so has part: feature:265150-267255:-1:exon
subclass of: SO_0000010

position:265150:-1
position: 265150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:267255:-1
position: 267255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:265150-267255:-1:exon

HIV01_RS01360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01360
old locus tag: HIV01_001360
EC number: 3.4.24.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019398083.1
GO function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M13-type metalloendopeptidase
translation: MSLNKPQVLVLSLAVVTALAACAKKEEAAAPAADAAKPAEASALKLDESKLPGVNRFTIADLDTSKDACTDFNGYVNGKWLAANAIPGDRTSWGAFEMLNERSIAVQRQLAEQAAADTKATGVEKIVGDFWATGMDAAKINEQGIAPLKGHLDAIAALDSQEKIADYLRTSAAKGENFLFGFGAEADFKDSKNNIAYASQGGLGLPDKAYYFDADKKDKLAAYEQHVAKVLELSGVAAADAAKQAKDVVAFETRLAKASVDKKTLQRDVSLYYNPVSPADADKLAPNFPWTKFFESQGVAVPKMFSLAMPDFHKEVSAMLADVPAAQWQTYLRFHTIDSASPYLSDAFVQENFAFYNQTMRGQKELKERGKRVLATIEDQAGEALGQMYVKVAFPEESKARMQTLVKNLSESLKGRIEHLAWMGDDTKKKAMEKWAAFTPKIGYPDKWREWNGLSTTRDSYIGNVLAAQEFNYKWNLGKIGKPVDRTEWGMPPQMVNAYYNPLQNEIVFPAAILQPPFFDPNADDATNYGGIGAVIGHEMTHGYDDQGSRFGPAGNFEVWWTDADAKSFSGRTDKLVQQFNGYEAAPGMKVKGDLTLGENIADLGGLATAYDAMKKATDGTPDPKTDGLTRDQRFFLNWGTVWRRNFTPDELKLRVNTDEHAPANFRAIGAPSNLPAFAAAFSCKPGQPMVREGDKQVVIW
SIO_010081: HIV01_RS01360
subclass of: SO_0000673
so part of: HIV01_RS01360
location: complement(265150..267255)
location: region:265150-267255:-1
so has part: feature:265150-267255:-1:exon

WP_245156884.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:265150-267255:-1:exon

HIV01_RS01365
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
alternative label: dagA
gene: cycA
locus tag: HIV01_RS01365
old locus tag: HIV01_001365
gene synonym: dagA
so part of: sequence
location: complement(267459..268853)
location: region:267459-268853:-1
so has part: feature:267459-268853:-1:exon
subclass of: SO_0000010

position:267459:-1
position: 267459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:268853:-1
position: 268853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:267459-268853:-1:exon

HIV01_RS01365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
alternative label: dagA
gene: cycA
locus tag: HIV01_RS01365
old locus tag: HIV01_001365
gene synonym: dagA
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007514862.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0006865 - amino acid transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: D-serine/D-alanine/glycine transporter
translation: MSDSSVHPDHLKRSLSNRHLQLIAIGGAIGTGLFMGSGKTINLAGPSILLVYLIIGIMLFFVMRAMGELLLSNLEYKSFIDFSTDLLGPWAGFFCGWTYWFCWIITAIADVIAIAAYAQFWFPGLAPWIPAVMCVVLLLCLNLVTVKLFGEMEFWFALIKIVAICALIVTGLGMVAWGFQSPSGHVASLSNLWSDGGLFPTGIAGFFAGFQIAVFAFVGIEVVGTTAAETANPERNLPKAINSIPVRIMLFYVLALVAIMAVTPWREVVPGKSPFVELFVLAGIPAAASLINFVVLTSATSSANSGIFSTSRMLYGLAQEDHAPKSFALLSRAAVPSRGLLFSCLCLLAGAMLVYVIPNLVTAFTLITTLAAVLFMFVWSLILFAYIAYRRKRPHLHEASKFKMPGGVAMCYACLVFFAFVLVLLTLQADTRQALMASPVWFVLLGIGYLWRQRRGVALEAGSA
SIO_010081: HIV01_RS01365
subclass of: SO_0000673
so part of: HIV01_RS01365
location: complement(267459..268853)
location: region:267459-268853:-1
so has part: feature:267459-268853:-1:exon

WP_200604495.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:267459-268853:-1:exon

HIV01_RS01370
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01370
old locus tag: HIV01_001370
so part of: sequence
location: 268988..269881
location: region:268988-269881:1
so has part: feature:268988-269881:1:exon
subclass of: SO_0000010

position:268988:1
position: 268988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:269881:1
position: 269881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:268988-269881:1:exon

HIV01_RS01370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01370
old locus tag: HIV01_001370
inference: COORDINATES: protein motif:HMM:NF013395.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA/RNA non-specific endonuclease
translation: MNQRLAVVATCVLLASCATHAPTRRMERAQHTAFQALQGGELTAEEIDKVAELCPFGMPQHAPGWDHGFTEFVVRDGYALEHSGQYRIPLWVCERLVPEHLTSRYPRKDNFRADPELSGPHAELADYKGSGYARGHHAPAEDHAWSKRLLDETFYLSNMSPQLGGFNSGVWSQVEKRVRTMAADSAVTWVITGALLYDPEEEQAATADGWVEYFTIGAGVAVPTHLFKIVVSEQDNGAVETVAFVIANAKPPSPYSHADFIKPVRWIEERSGLDFMPELEPAQSQRLEARAGQIDSP
SIO_010081: HIV01_RS01370
subclass of: SO_0000673
so part of: HIV01_RS01370
location: 268988..269881
location: region:268988-269881:1
so has part: feature:268988-269881:1:exon

WP_200604496.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:268988-269881:1:exon

HIV01_RS01375
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01375
old locus tag: HIV01_001375
so part of: sequence
location: 269906..270520
location: region:269906-270520:1
so has part: feature:269906-270520:1:exon
subclass of: SO_0000010

position:269906:1
position: 269906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:270520:1
position: 270520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:269906-270520:1:exon

HIV01_RS01375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01375
old locus tag: HIV01_001375
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIANYRLRYRPLRAGVAISSAELGTFGTLGCLATSDGQDRWGITARHVLTRTNALRMDVFQPDLRVVGALVSESLADMKFVAGLDVVAFRIARTITTTPVILELGAWQGVVEPVSGMTVVKSGFATGVTRARIGQVDAEGFQVLPEPGMPPGYAAYAAGDSGAAWMTQDARLVGIHVSQSQQGATGRALRLRSALTRLGLRLVV
SIO_010081: HIV01_RS01375
subclass of: SO_0000673
so part of: HIV01_RS01375
location: 269906..270520
location: region:269906-270520:1
so has part: feature:269906-270520:1:exon

WP_200604497.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:269906-270520:1:exon

HIV01_RS01380
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01380
old locus tag: HIV01_001380
so part of: sequence
location: 270539..271342
location: region:270539-271342:1
so has part: feature:270539-271342:1:exon
subclass of: SO_0000010

position:270539:1
position: 270539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:271342:1
position: 271342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:270539-271342:1:exon

HIV01_RS01380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01380
old locus tag: HIV01_001380
inference: COORDINATES: protein motif:HMM:TIGR00637.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TOBE domain-containing protein
translation: MTDSSFRINSALTVEARRGPFGGRRWMALLAALGDAESITAAAKDVGLSYKAAWDAIDAMNNLSDQPLVERAVGGKGGGGTRLTDHGRRLVAAYQAVEEENERFIERLNARMSGAAAELETIGRLAMLTSARNHFAGKVVRIATGAVNDEVELELSGGARIVAIITHESLQHMALAVGDSAVALVKASSVIVATGADVKLSARNRLQGKVARVQPGAVNAEVVIDLGGGNSVAAIITNTSALALQLAEGVEAAAIFKASGVILAVGA
SIO_010081: HIV01_RS01380
subclass of: SO_0000673
so part of: HIV01_RS01380
location: 270539..271342
location: region:270539-271342:1
so has part: feature:270539-271342:1:exon

WP_200604498.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:270539-271342:1:exon

HIV01_RS01385
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01385
old locus tag: HIV01_001385
so part of: sequence
location: complement(271339..271983)
location: region:271339-271983:-1
so has part: feature:271339-271983:-1:exon
subclass of: SO_0000010

position:271339:-1
position: 271339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:271983:-1
position: 271983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:271339-271983:-1:exon

HIV01_RS01385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01385
old locus tag: HIV01_001385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010340893.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding cassette domain-containing protein
translation: MLSFDLDFARGDFTLAARAEVDAGVTGVFGPSGSGKSTLLALIAGLLRPGRGVIRADGDVLVDTASNRFVPPWDRHFGLVFQDGQLFPHLTVRRNLLYGHDRIAPQMRRHDLQSVAELLEIVPLLDRRPALLSGGERQRVALGRALLYSPRLLLLDEPLSSLDERLKQQILPFLRRIKEETRVPMLYVTHSRNEIDYLADAVITMDRGRLGVAP
SIO_010081: HIV01_RS01385
subclass of: SO_0000673
so part of: HIV01_RS01385
location: complement(271339..271983)
location: region:271339-271983:-1
so has part: feature:271339-271983:-1:exon

WP_200604499.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:271339-271983:-1:exon

HIV01_RS01390
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: modB
locus tag: HIV01_RS01390
old locus tag: HIV01_001390
so part of: sequence
location: complement(271970..272689)
location: region:271970-272689:-1
so has part: feature:271970-272689:-1:exon
subclass of: SO_0000010

position:271970:-1
position: 271970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272689:-1
position: 272689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:271970-272689:-1:exon

HIV01_RS01390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: modB
locus tag: HIV01_RS01390
old locus tag: HIV01_001390
EC number: 7.3.2.-
inference: COORDINATES: protein motif:HMM:NF006939.0
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0015098 - molybdate ion transmembrane transporter activity [Evidence IEA]
GO process: GO:0015689 - molybdate ion transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: molybdate ABC transporter permease subunit
translation: MWLSPEEWDALRLSAKVALWSTAACLPFGIALGWLLERRRFPGKFWIDMLVQLPMVLPPVVPGYLLLLLLGTNGPLGAWLQATFGIVVAFTWKGAVIASAVMAFPLMVQPIRLAFRLIDPRLENAAITLGARPWSVFFSVTLPLSVPGIIAGSFLCFSRSLGEFGATMAFVGNIPGETRTLPLAIYSLTHVPDGEAAAMRLSLLSIVLAVAALLLSRWVSHRAERKLGFQDHRHQHAEL
SIO_010081: HIV01_RS01390
subclass of: SO_0000673
so part of: HIV01_RS01390
location: complement(271970..272689)
location: region:271970-272689:-1
so has part: feature:271970-272689:-1:exon

WP_200604500.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:271970-272689:-1:exon

HIV01_RS01395
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: modA
locus tag: HIV01_RS01395
old locus tag: HIV01_001395
so part of: sequence
location: complement(272695..273465)
location: region:272695-273465:-1
so has part: feature:272695-273465:-1:exon
subclass of: SO_0000010

position:272695:-1
position: 272695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273465:-1
position: 273465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:272695-273465:-1:exon

HIV01_RS01395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: modA
locus tag: HIV01_RS01395
old locus tag: HIV01_001395
EC number: 7.3.2.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019399803.1
GO process: GO:0015689 - molybdate ion transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: molybdate ABC transporter substrate-binding protein
translation: MSAPPVLRRLALLALLALAGPAAAEEPVRVFAAASLTNALNDIGAAWEKAGHPKPSLAYAASSALAKQIEAGAPADVFASADLTWMDYLDQRGRIAPGTRVSLLGNDLVLIAPKGRSVPVEMKRGFDFAGAFKGKLCTGEPGVVPVGIYAKQSLEALGWWASLKGRIVGTDDVRTALAFVERGECPLGIVYATDAKVSSKVDVLKAFPADTHKPIVYPFAVVKGARPEAQAFVRFVQTSAAAADIFDRYGFTRLKP
SIO_010081: HIV01_RS01395
subclass of: SO_0000673
so part of: HIV01_RS01395
location: complement(272695..273465)
location: region:272695-273465:-1
so has part: feature:272695-273465:-1:exon

WP_200604501.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:272695-273465:-1:exon

HIV01_RS01400
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01400
old locus tag: HIV01_001400
so part of: sequence
location: complement(273533..273913)
location: region:273533-273913:-1
so has part: feature:273533-273913:-1:exon
subclass of: SO_0000010

position:273533:-1
position: 273533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273913:-1
position: 273913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:273533-273913:-1:exon

HIV01_RS01400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01400
old locus tag: HIV01_001400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007513777.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tautomerase family protein
translation: MPLVRVDLMEGKDDAWLQGIGDVIHAAIEDVLKAPKDDRFQVFTRHPRGELSIDRTYMGIERSDDCILIQVTISQGRSVETKQAFYRAVADGLHARLGMRTQDVFINLVEVVKENWSFGDGIAQYA
SIO_010081: HIV01_RS01400
subclass of: SO_0000673
so part of: HIV01_RS01400
location: complement(273533..273913)
location: region:273533-273913:-1
so has part: feature:273533-273913:-1:exon

WP_158733256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:273533-273913:-1:exon

HIV01_RS01405
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01405
old locus tag: HIV01_001405
so part of: sequence
location: complement(274057..276075)
location: region:274057-276075:-1
so has part: feature:274057-276075:-1:exon
subclass of: SO_0000010

position:274057:-1
position: 274057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276075:-1
position: 276075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274057-276075:-1:exon

HIV01_RS01405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01405
old locus tag: HIV01_001405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014507002.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M2 family metallopeptidase
translation: MKPVRALLALGITAAVIGLAGCKKEPTPTTTTTGGTAATAPAGETADQFIARVNDEYRKMFPEMSAAQWLSSTYINDDSQLLAAKANERYLAQLNSWIEQSQRFEGQQMSPATARAIQLLKLGTSMPPPKDPAKLEELTKIASKLEGMYGAGTYCTGDGDAKKCRQLGELEDVLRSSRDYDTQLDAWQGWHTIAQPMRKDYTRFVELVNDGAHDLGFADTGEMWRSGYDMSPAEMSAETDRLWGQVKPLYEQLHCYARTRLEAKYGDDKGHVTGNMLPAHLMGNMWQQDWGNLWDILAPYQNAGSLDITAALESQYQAAYDAQLVKHAGQRTPTDLAQIEQDAKLASAKLMTERAQDFYTSLGMQKLPASYWDKTQFIKPRDRDVVCHASAWDMNMAGDVRTKMCIKPNEEDFTTIYHELGHIYYDLAYNKQPPLFQQGAHDGFHEAIGDTIVLSMTPKYLQSIGLVGDQQQSNEALINAQMRMALAKVSFLPFGLMIDRWRWGVFDGSIKPGEYNKAWWDLKAKYQGVAPVSARGEDYFDAGAKYHVPGNTPYTRYFLSHVLQFQFYKALCDSAGYKGPLYECSFYGNKEAGARFQAMLDKGASQPWQKTMKELTGGEKMDASAVLEYFAPLQTWLKQQNEGKTCGWQANGTAAAAPAAKPEAKPETAKKG
SIO_010081: HIV01_RS01405
subclass of: SO_0000673
so part of: HIV01_RS01405
location: complement(274057..276075)
location: region:274057-276075:-1
so has part: feature:274057-276075:-1:exon

WP_200606283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:274057-276075:-1:exon

HIV01_RS01410
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01410
old locus tag: HIV01_001410
so part of: sequence
location: complement(276184..276660)
location: region:276184-276660:-1
so has part: feature:276184-276660:-1:exon
subclass of: SO_0000010

position:276184:-1
position: 276184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276660:-1
position: 276660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:276184-276660:-1:exon

HIV01_RS01410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01410
old locus tag: HIV01_001410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017112715.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLTLSDIDSVPVATLLARYGLQLERVADGQPIPGSYWGECEAGLIGHNVYARGDTPVHSLLHEAAHLIVLPPERRALVHTDATDSIEEEDAVCVLQALLGDALPGVGRDRILADMDGWGYTFRLGSARAYFEHDADNAWQWLHERGLADATTRTLSPA
SIO_010081: HIV01_RS01410
subclass of: SO_0000673
so part of: HIV01_RS01410
location: complement(276184..276660)
location: region:276184-276660:-1
so has part: feature:276184-276660:-1:exon

WP_200604502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:276184-276660:-1:exon

HIV01_RS01415
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: minE
locus tag: HIV01_RS01415
old locus tag: HIV01_001415
so part of: sequence
location: complement(276706..276972)
location: region:276706-276972:-1
so has part: feature:276706-276972:-1:exon
subclass of: SO_0000010

position:276706:-1
position: 276706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276972:-1
position: 276972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:276706-276972:-1:exon

HIV01_RS01415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: minE
locus tag: HIV01_RS01415
old locus tag: HIV01_001415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011036323.1
GO process: GO:0032955 - regulation of division septum assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cell division topological specificity factor MinE
translation: MGLFDFLLAKKQTASIAKDRLRIIVAHERAGRGGTSPDYLPMLQRELLEVIRKYINVDADAVKVDLIGDGDNKVLDISVALPENPAQA
SIO_010081: HIV01_RS01415
subclass of: SO_0000673
so part of: HIV01_RS01415
location: complement(276706..276972)
location: region:276706-276972:-1
so has part: feature:276706-276972:-1:exon

WP_158734134.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:276706-276972:-1:exon

HIV01_RS01420
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: minD
locus tag: HIV01_RS01420
old locus tag: HIV01_001420
so part of: sequence
location: complement(276975..277784)
location: region:276975-277784:-1
so has part: feature:276975-277784:-1:exon
subclass of: SO_0000010

position:276975:-1
position: 276975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277784:-1
position: 277784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:276975-277784:-1:exon

HIV01_RS01420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: minD
locus tag: HIV01_RS01420
old locus tag: HIV01_001420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006424120.1
GO function: GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO process: GO:0000918 - division septum site selection [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: septum site-determining protein MinD
translation: MAEIIVVTSGKGGVGKTTTSASLACGLARRGHKVGVIDFDVGLRNLDLIMGCERRVVYDFVNVVNGEATLRQALIKDKRFDNMFVLAASQTRDKDALTKEGVQKVLDDMIADGFDYIVCDSPAGIEKGAYLAMYFADQALVVVNPEVSSVRDSDRILGLLSSKTRRAENGERVKEHLLLTRYSPKRVETGEMLSVGDVEEILGLKTVGVIPESPDVLNASNKGEPVILETESDAAQAYDDAVARLLGDTRPMRFTTAEKKGFFSKIFGG
SIO_010081: HIV01_RS01420
subclass of: SO_0000673
so part of: HIV01_RS01420
location: complement(276975..277784)
location: region:276975-277784:-1
so has part: feature:276975-277784:-1:exon

WP_200604503.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:276975-277784:-1:exon

HIV01_RS01425
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: minC
locus tag: HIV01_RS01425
old locus tag: HIV01_001425
so part of: sequence
location: complement(277809..278576)
location: region:277809-278576:-1
so has part: feature:277809-278576:-1:exon
subclass of: SO_0000010

position:277809:-1
position: 277809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:278576:-1
position: 278576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:277809-278576:-1:exon

HIV01_RS01425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: minC
locus tag: HIV01_RS01425
old locus tag: HIV01_001425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019184542.1
GO function: GO:0004857 - enzyme inhibitor activity [Evidence IEA]
GO process: GO:0000918 - division septum site selection [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: septum site-determining protein MinC
translation: MDFEPAGELKIGQVGIANLRIRTLDVDRLVSEMRDRVQRAPKLFARAAVVLDFGGLTRTPDQATATALIKGLREAGVLPVAIAYGTSEIEQLSEALGLPLLAKFRASYERDEAAAAATPAPQSAPPPRREPELAAATKASPATASASPGMIQSKPVRSGQQIYAENRDLTVLTTVGAGAEVIADGSVHIYGPLRGRALAGAQGNEQARIFCREFHAELVAIAGHYKVLEEIPKDLRGKAVQVWLEDQQLKIAALD
SIO_010081: HIV01_RS01425
subclass of: SO_0000673
so part of: HIV01_RS01425
location: complement(277809..278576)
location: region:277809-278576:-1
so has part: feature:277809-278576:-1:exon

WP_200604504.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:277809-278576:-1:exon

HIV01_RS01430
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01430
old locus tag: HIV01_001430
so part of: sequence
location: complement(278585..279214)
location: region:278585-279214:-1
so has part: feature:278585-279214:-1:exon
subclass of: SO_0000010

position:278585:-1
position: 278585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:279214:-1
position: 279214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:278585-279214:-1:exon

HIV01_RS01430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01430
old locus tag: HIV01_001430
EC number: 2.3.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019399453.1
GO function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MSIVVRDVREHELDSVLALNNAAGPAILPLDAARLRHFFETAEYFRVAERDGALAGFLIGMGSHSEHDSSNFRWFRERYPDFFYIDRIVVASRRRGGGVGRAFYADAQSYAEMRYPQMACEVFLEGSNDPALLFHGSFGFHEVGQHMMTEADVRAAMLMKPLCSFAWVRDTYGDALPQVPWIIQARGPRNHGGPKAADALMQRPTGTGL
SIO_010081: HIV01_RS01430
subclass of: SO_0000673
so part of: HIV01_RS01430
location: complement(278585..279214)
location: region:278585-279214:-1
so has part: feature:278585-279214:-1:exon

WP_200604505.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:278585-279214:-1:exon

HIV01_RS01435
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01435
old locus tag: HIV01_001435
so part of: sequence
location: 279476..280672
location: region:279476-280672:1
so has part: feature:279476-280672:1:exon
subclass of: SO_0000010

position:279476:1
position: 279476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:280672:1
position: 280672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:279476-280672:1:exon

HIV01_RS01435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01435
old locus tag: HIV01_001435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013535810.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histidine kinase
translation: MLARLNHTRLLRYAGLFTWGAVGLWLLNVWLDPTLLAPDAEGPPTLQVLRWLSVYLTFGAVYWWITRQLGQRRPGVVDHGLLLVLTACAIGVGYFSGTGLGSILLMVVAGLLPWLMPVRFGLVWLICGNVAIIPVFVGALDFPPILAVLQSLAYMGFSSLVFVTALVARQQAEAREEQRRLNAELRATRALLGESVRVNERTRISRELHDLLGHHLTALSLNLEVAGHLSEGRVKEHVQQAHTLARLLLTDVREAVSQLREGGAIDLGAALLPLAENVPALDIHMDIETPLTLDDPERAHVMLRCTQEIITNAVRHAGARNLWINAGRRSDCIVMSARDDGHGADTFVAGNGLRGMRERLQQHGGDLKIETRPEAGFCLHLTLPASAAAAAACEGAIA
SIO_010081: HIV01_RS01435
subclass of: SO_0000673
so part of: HIV01_RS01435
location: 279476..280672
location: region:279476-280672:1
so has part: feature:279476-280672:1:exon

WP_200604506.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:279476-280672:1:exon

HIV01_RS01440
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01440
old locus tag: HIV01_001440
so part of: sequence
location: 280669..281310
location: region:280669-281310:1
so has part: feature:280669-281310:1:exon
subclass of: SO_0000010

position:280669:1
position: 280669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:281310:1
position: 281310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:280669-281310:1:exon

HIV01_RS01440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01440
old locus tag: HIV01_001440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002807809.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator transcription factor
translation: MIRVLIVDDQTLVRQGVRSLLALAEGIEVVGEAGDGRHAVELIPQIKPDVVLMDMRMPVMSGLEALQALARTNSLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVSAIQAVADGGSLMQPAVTQRLLSGLEHMRNDFVSLDRPDPLTERETEILRLMAGGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV
SIO_010081: HIV01_RS01440
subclass of: SO_0000673
so part of: HIV01_RS01440
location: 280669..281310
location: region:280669-281310:1
so has part: feature:280669-281310:1:exon

WP_200604507.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:280669-281310:1:exon

HIV01_RS01445
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01445
old locus tag: HIV01_001445
so part of: sequence
location: 281494..282573
location: region:281494-282573:1
so has part: feature:281494-282573:1:exon
subclass of: SO_0000010

position:281494:1
position: 281494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:282573:1
position: 282573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281494-282573:1:exon

HIV01_RS01445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01445
old locus tag: HIV01_001445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005415686.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SRPBCC family protein
translation: MTRLIEILISLAIVAALFLIVGIALPASRHLQHSVETNRKVTIVFDTLNSLRRFKDWNPLVLRDPKMQLKFSGPVSGVGARMDYDSQEKGLRQGSWEITESVPGKKVAYALTDIEPGNNKRTVFTLKPTGRGGRNVEITQTYDVEYGWNLIGRYAGLYVSSNVGEDMKMGLGRLSNMLAAVPNYDYAELSKDDPAKAPKLFDRPAENLLVVSAAVERNNDKVLGQINSNMEWIKKVMAANGLEPAGPVRIVTNEFGSDIYSFDVAQPVRKIGDEASASTKLDVKIEGPVVAVFNEPAKVAMVPSFKGHMANLAKVRDALRGWALTHGYETVERPYESWKAGVAAGFTEDGEYDVFWAVK
SIO_010081: HIV01_RS01445
subclass of: SO_0000673
so part of: HIV01_RS01445
location: 281494..282573
location: region:281494-282573:1
so has part: feature:281494-282573:1:exon

WP_200604508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:281494-282573:1:exon

HIV01_RS01450
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01450
old locus tag: HIV01_001450
so part of: sequence
location: 282694..283059
location: region:282694-283059:1
so has part: feature:282694-283059:1:exon
subclass of: SO_0000010

position:282694:1
position: 282694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283059:1
position: 283059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:282694-283059:1:exon

HIV01_RS01450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01450
old locus tag: HIV01_001450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011050791.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF423 domain-containing protein
translation: MNANASTLPTRLLTASGAVLASLAVALSAYAAHAVDAGAQHRLYSAALFAFGHGIALAALAPHLRRKLTLAALSTLLLGTLLFSGSLVAAVLMGASTALAPFGGTLMILAWLVYAADALRR
SIO_010081: HIV01_RS01450
subclass of: SO_0000673
so part of: HIV01_RS01450
location: 282694..283059
location: region:282694-283059:1
so has part: feature:282694-283059:1:exon

WP_200604509.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:282694-283059:1:exon

HIV01_RS01455
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01455
old locus tag: HIV01_001455
so part of: sequence
location: 283061..283735
location: region:283061-283735:1
so has part: feature:283061-283735:1:exon
subclass of: SO_0000010

position:283061:1
position: 283061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283735:1
position: 283735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:283061-283735:1:exon

HIV01_RS01455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01455
old locus tag: HIV01_001455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016901696.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-3-methyladenine glycosylase
translation: MPRHSRGFDTDAAHAHLLKRDRKLARWMRRIGPLAPDPRWRKSFDPVDALARAILYQQLSGKAAATIVGRVEAAIDSTRFHCDTLCRIDDVALRACGVSGNKSLALRDLAAREARGEIPDLRRMSTMDNQAIIDALVPVRGIGRWTVEMMLMFRLGRPDVLPVDDLGIRKGAQFVDGLEQMPTPKELAATGERWGPYRTYASLYLWKIADLGGQARTPTKRSQD
SIO_010081: HIV01_RS01455
subclass of: SO_0000673
so part of: HIV01_RS01455
location: 283061..283735
location: region:283061-283735:1
so has part: feature:283061-283735:1:exon

WP_200604510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:283061-283735:1:exon

HIV01_RS01460
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01460
old locus tag: HIV01_001460
so part of: sequence
location: 283852..284214
location: region:283852-284214:1
so has part: feature:283852-284214:1:exon
subclass of: SO_0000010

position:283852:1
position: 283852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:284214:1
position: 284214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:283852-284214:1:exon

HIV01_RS01460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01460
old locus tag: HIV01_001460
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLVSASVLLFASAMAIASPSNKWRIQVSSDADSDGVVVFHIAPLKDAAVDVSVAIPKDANENHVARLIRDQLRAKLGNSYRIEVDDGEDVLIKKHLGDANFDLTITQQTAKGVRITLDKE
SIO_010081: HIV01_RS01460
subclass of: SO_0000673
so part of: HIV01_RS01460
location: 283852..284214
location: region:283852-284214:1
so has part: feature:283852-284214:1:exon

WP_200604511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:283852-284214:1:exon

HIV01_RS01465
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01465
old locus tag: HIV01_001465
so part of: sequence
location: complement(284223..285338)
location: region:284223-285338:-1
so has part: feature:284223-285338:-1:exon
subclass of: SO_0000010

position:284223:-1
position: 284223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:285338:-1
position: 285338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284223-285338:-1:exon

HIV01_RS01465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01465
old locus tag: HIV01_001465
EC number: 2.3.-.-
inference: COORDINATES: protein motif:HMM:NF013884.2
GO function: GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acyltransferase
translation: MTLRTLADGSVQHDNNFNLIRLVAAWLVIYGHSWPVTASGGADLLLQVVQIKFAGGIAVDMFFVISGFLIACSVERNPLPQYLVARALRIFPALIVCVALSVFVLGPLLTTAPDYWSSAGTWKYLWKNITLRQTQYFLPGVFETLPSAAINGSLWSLPIEFKLYLLLAFLAFARLFRRGRFTVFCLVALVAAIVRYGGESLTPEKSNLLWCTAYFLTGSLAWHHRARIPLSWPLLVGLLVGAAALRGGPYYFIAYFVALSYTTLFLAYVPKLPAIRRHDISYGVYLYGWPSQQLVQQFSPGSALHNTLWATLLAGTLAALSWRLVEEPALRLKHRFGARLGRRTPSTTPGTSPETAPEPATAAASPVAADG
SIO_010081: HIV01_RS01465
subclass of: SO_0000673
so part of: HIV01_RS01465
location: complement(284223..285338)
location: region:284223-285338:-1
so has part: feature:284223-285338:-1:exon

WP_200604512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:284223-285338:-1:exon

HIV01_RS01470
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01470
old locus tag: HIV01_001470
so part of: sequence
location: complement(285420..286220)
location: region:285420-286220:-1
so has part: feature:285420-286220:-1:exon
subclass of: SO_0000010

position:285420:-1
position: 285420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:286220:-1
position: 286220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285420-286220:-1:exon

HIV01_RS01470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01470
old locus tag: HIV01_001470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005930308.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: D-alanyl-D-alanine carboxypeptidase family protein
translation: MRGQPRILINTPEIELWRGGLLRARSNFDARALARARHVLRRKRDGQYLAVDLPEGLLALVPHLRREPGLDAALDAIDAPPSHLRAGIEHVRELPLDRLEERLHALGLDGEYGERTGLELVAEPDWLAFAGFDRYRRPLWLHVEAARAWSHLHDAALRDGIVLEAISGYRSHDYQLGIFERKLARGLGVEEILTVNAAPGYSEHHSGLALDIGAPDEPPAEESFEGTAAFAWLRDNAEGFGFVMSYPRDNPHGIVYEPWHWRYQSG
SIO_010081: HIV01_RS01470
subclass of: SO_0000673
so part of: HIV01_RS01470
location: complement(285420..286220)
location: region:285420-286220:-1
so has part: feature:285420-286220:-1:exon

WP_207527048.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:285420-286220:-1:exon

HIV01_RS01475
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01475
old locus tag: HIV01_001475
so part of: sequence
location: complement(286353..286532)
location: region:286353-286532:-1
so has part: feature:286353-286532:-1:exon
subclass of: SO_0000010

position:286353:-1
position: 286353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:286532:-1
position: 286532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286353-286532:-1:exon

HIV01_RS01475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01475
old locus tag: HIV01_001475
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003468945.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4177 domain-containing protein
translation: MSQRWTYEVIEIVPRMLGPAVSERLQEELNRLGEEGWELVSVTAVTPFDHLRAVLKRPV
SIO_010081: HIV01_RS01475
subclass of: SO_0000673
so part of: HIV01_RS01475
location: complement(286353..286532)
location: region:286353-286532:-1
so has part: feature:286353-286532:-1:exon

WP_200604514.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:286353-286532:-1:exon

HIV01_RS01480
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01480
old locus tag: HIV01_001480
so part of: sequence
location: complement(286587..287468)
location: region:286587-287468:-1
so has part: feature:286587-287468:-1:exon
subclass of: SO_0000010

position:286587:-1
position: 286587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:287468:-1
position: 287468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286587-287468:-1:exon

HIV01_RS01480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01480
old locus tag: HIV01_001480
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIAVAGCADEAPEPVEESRGTHLAGVMIDPQLDEISGIAASRRHRDVLWMLDDGGNPERLFAVSTGGTRLATLRVEGVTKTDWEDLASFELDGRNYLLIADTGDNGGLRRSLQLHIVEEPARIENARLRPAWSIAFRWPDGARDCEAVAVDAENRQVLLISKRRQPPELFSLPLHPRGTTLQTAHKLGTLAGVPQADANALRRNPQRARLDSQVTAADVSPDGRTLAVMTYRWLLLYPRHSREDWGQAVARAPKFEPLPWLPQAEALAWSRDGKHLYATGEFIPAPLYRITPG
SIO_010081: HIV01_RS01480
subclass of: SO_0000673
so part of: HIV01_RS01480
location: complement(286587..287468)
location: region:286587-287468:-1
so has part: feature:286587-287468:-1:exon

WP_207527049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:286587-287468:-1:exon

HIV01_RS01485
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: purT
locus tag: HIV01_RS01485
old locus tag: HIV01_001485
so part of: sequence
location: 287756..288955
location: region:287756-288955:1
so has part: feature:287756-288955:1:exon
subclass of: SO_0000010

position:287756:1
position: 287756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:288955:1
position: 288955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287756-288955:1:exon

HIV01_RS01485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: purT
locus tag: HIV01_RS01485
old locus tag: HIV01_001485
EC number: 2.1.2.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005408545.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004644 - phosphoribosylglycinamide formyltransferase activity [Evidence IEA]
GO process: GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: formate-dependent phosphoribosylglycinamide formyltransferase
translation: MITLGTPLSPHAYRVLLLGSGELGKEVAIELQRFGVEVVAADRYADAPAMQVAHRSHVLDMLDGGAIRALIALERPHLIVPEIEAIHTQTLVDLEREFGERGTQTRVIPTARAARLTMDREGIRRLAAETLGLPTSPYKFVDTLEDYRAAVETIGLPCVVKPVMSSSGKGQSLVRDSDSIDKAWDYAQTGGRAGAGRVIVEGFVDFDYEITLLTVRHVGGTTFCAPIGHLQRDGDYRESWQPQAMSTKALARAQGIARTITDDLGGWGVFGVELFVKGDDVWFSEVSPRPHDTGLVTLASQDLSEFALHARAILGLPVPSIREYGPAASCAVLAQGHGVPVFDGVDAALAQADTQLRLFGKPRVEGHRRVAVTLALAEDIDTARERARRSAAALNIELR
SIO_010081: HIV01_RS01485
subclass of: SO_0000673
so part of: HIV01_RS01485
location: 287756..288955
location: region:287756-288955:1
so has part: feature:287756-288955:1:exon

WP_200604516.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:287756-288955:1:exon

HIV01_RS01490
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01490
old locus tag: HIV01_001490
so part of: sequence
location: 288983..289408
location: region:288983-289408:1
so has part: feature:288983-289408:1:exon
subclass of: SO_0000010

position:288983:1
position: 288983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:289408:1
position: 289408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288983-289408:1:exon

HIV01_RS01490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01490
old locus tag: HIV01_001490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLDETQGYAVFFYPQALEALGEAIRPYMHDGASGPHVLCNSIDTGGALIEMTIEGRTAEGNAIAVELMVPANMVRMIVSARSDGVFGFGPRVVAAPADADAVAVPPTALASAQTVHAPVEIPMPMVDPVTPVMAMLPPKAQ
SIO_010081: HIV01_RS01490
subclass of: SO_0000673
so part of: HIV01_RS01490
location: 288983..289408
location: region:288983-289408:1
so has part: feature:288983-289408:1:exon

WP_207527050.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:288983-289408:1:exon

HIV01_RS01495
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01495
old locus tag: HIV01_001495
so part of: sequence
location: complement(289471..290706)
location: region:289471-290706:-1
so has part: feature:289471-290706:-1:exon
subclass of: SO_0000010

position:289471:-1
position: 289471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:290706:-1
position: 290706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:289471-290706:-1:exon

HIV01_RS01495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01495
old locus tag: HIV01_001495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014036367.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: endonuclease/exonuclease/phosphatase family protein
translation: MNRLSLPLIGAALSLLCACTQVNIKGDPEAWARSMSSDTNLRVATYNTSLYDDQDGGLIHRLEAGDPGARKIAAVLQRVRPDLVLLNEFDYDAQGTAADLFQRDYLAVAQAGGGEPLKYPYRYLAPVNTGVPSGLDLDGNGEAGGAGRNRGNDAWGYGLHPGQYGMLVLSRHPIDADQVRTFQLLKWSAMPGASQPRDPANGKPWYPASIWSQLRLSSKSHWDVPVRTPAGVVHFLVSHPTPPVFDGPEDRNGVRNADEIRLWREYLSSPNAAWLCDDQGRCGGLPADARFVIAGDLNNDPSDGDGHHEAIVELLEHARVARYATPRSEGAVEVGARYAQAGIVRRGSPAHATGDFGPKAGTMRLDYVLPSVGFSVEGSGVFWPAAAQPEAAIADGSDHHLVWVDVGMEPR
SIO_010081: HIV01_RS01495
subclass of: SO_0000673
so part of: HIV01_RS01495
location: complement(289471..290706)
location: region:289471-290706:-1
so has part: feature:289471-290706:-1:exon

WP_200604518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:289471-290706:-1:exon

HIV01_RS01500
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01500
old locus tag: HIV01_001500
so part of: sequence
location: complement(290749..291489)
location: region:290749-291489:-1
so has part: feature:290749-291489:-1:exon
subclass of: SO_0000010

position:290749:-1
position: 290749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:291489:-1
position: 291489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:290749-291489:-1:exon

HIV01_RS01500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01500
old locus tag: HIV01_001500
EC number: 2.3.2.8
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016944959.1
GO function: GO:0004057 - arginyltransferase activity [Evidence IEA]; GO:0008914 - leucyltransferase activity [Evidence IEA]
GO process: GO:0016598 - protein arginylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: arginyltransferase
translation: MGTEPQDSDDLRLFHTGEHACGYWPERVARDLVLDPRDPRLRQWYPHALGWGFRRSGDIVYRPHCAGCRACVAVRIPVDRFVPDRSQRRCLARNAGVEMRVLPTQRTPEQLSLYRRYLAARHAGGGMDGHGATEFDQFLIGSWSEGRFLELREASTHGPGKLLAVAVTDVTEAALSAVYTFYDPDLADRGLGTLAILRQLEWARRERRRHLYLGYWIQGHAKMDYKRRFRPLEAFDGRDWHDLPLA
SIO_010081: HIV01_RS01500
subclass of: SO_0000673
so part of: HIV01_RS01500
location: complement(290749..291489)
location: region:290749-291489:-1
so has part: feature:290749-291489:-1:exon

WP_200604519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:290749-291489:-1:exon

HIV01_RS01505
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01505
old locus tag: HIV01_001505
so part of: sequence
location: 291630..292265
location: region:291630-292265:1
so has part: feature:291630-292265:1:exon
subclass of: SO_0000010

position:291630:1
position: 291630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:292265:1
position: 292265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291630-292265:1:exon

HIV01_RS01505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01505
old locus tag: HIV01_001505
inference: COORDINATES: protein motif:HMM:NF024600.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: calcium-binding protein
translation: MKQRNSLSAVLAVAIAAIVTAGTALAATQASDGTHAPRPKLDVNDDGVVDRNEAAASPRLAAKFDQLDVNKDGKLDRSERPHHGGKGRGHGGGMGGLIDADKDGDGRISKTEASSLPWLTKSFDQVDGNRDGYVVRSELRSYHEKMRPQREAERAKQAEERFAAADLNHDGKLSKLEVSENMPRLSKGFAFMDEDRDGYLTRDDLKHSPRH
SIO_010081: HIV01_RS01505
subclass of: SO_0000673
so part of: HIV01_RS01505
location: 291630..292265
location: region:291630-292265:1
so has part: feature:291630-292265:1:exon

WP_200604520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:291630-292265:1:exon

HIV01_RS01510
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01510
old locus tag: HIV01_001510
so part of: sequence
location: complement(292381..293223)
location: region:292381-293223:-1
so has part: feature:292381-293223:-1:exon
subclass of: SO_0000010

position:292381:-1
position: 292381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:293223:-1
position: 293223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:292381-293223:-1:exon

HIV01_RS01510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01510
old locus tag: HIV01_001510
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRQVFSSQRLENVEQVAQMMRDADIEVRITNGRSYKGGRRGTFSYSEPGGPKPAVWVVRSEDQVRAREILRDAGLLESTRESFRGPSFRFEPETQGKSPQQSRMLRIKLVLMAGIVIIGGLVIRHAVNLDIANEALKEHPLDGSTAAIPQPLAAAVLAQELPKARLDVLCLAVDGKDAPATLVSAMQQPGRQVVPASQCVRNANDEVGSQQRATGAPALIIDVHAFRPQKRDAANDDAITGVVEYTAYHHRMSASYKTLEVTQVGGTGWKVVRTIKHVSM
SIO_010081: HIV01_RS01510
subclass of: SO_0000673
so part of: HIV01_RS01510
location: complement(292381..293223)
location: region:292381-293223:-1
so has part: feature:292381-293223:-1:exon

WP_200604521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:292381-293223:-1:exon

HIV01_RS01515
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: tesB
locus tag: HIV01_RS01515
old locus tag: HIV01_001515
so part of: sequence
location: complement(293231..294142)
location: region:293231-294142:-1
so has part: feature:293231-294142:-1:exon
subclass of: SO_0000010

position:293231:-1
position: 293231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:294142:-1
position: 294142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:293231-294142:-1:exon

HIV01_RS01515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: tesB
locus tag: HIV01_RS01515
old locus tag: HIV01_001515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005408551.1
GO function: GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]
GO process: GO:0006637 - acyl-CoA metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acyl-CoA thioesterase II
translation: MTSPASEQVVPELVELLSLERLEDNLFRGQSRDIGTKYVFGGQVVGQALSAAQATMSEPRGAHSLHAYFLRAGDVSAPIVYQIDRTRDGGSFSVRRITAIQHGEVIFFMAASFQQHEDAVEHQLTMPEVPKPEDIDPAPPVPEHVMATLPTKVQRWLSRQGPFEFRHVYPRDELNPPKRPPYQQVWFRLSERVGDAPELHRALLAYASDFHLLGTATFPHGISYYQPNVQMASLDHAMWFHRPFRADEWLLYSIDSPSVQSSRGLARGQIFDRDGRLVASTAQEGLIRVVRDAAAAAQVPAKE
SIO_010081: HIV01_RS01515
subclass of: SO_0000673
so part of: HIV01_RS01515
location: complement(293231..294142)
location: region:293231-294142:-1
so has part: feature:293231-294142:-1:exon

WP_200604522.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:293231-294142:-1:exon

HIV01_RS01520
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01520
old locus tag: HIV01_001520
so part of: sequence
location: complement(294203..294775)
location: region:294203-294775:-1
so has part: feature:294203-294775:-1:exon
subclass of: SO_0000010

position:294203:-1
position: 294203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:294775:-1
position: 294775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:294203-294775:-1:exon

HIV01_RS01520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01520
old locus tag: HIV01_001520
EC number: 3.5.1.28
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017155861.1
GO function: GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO process: GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-acetylmuramoyl-L-alanine amidase
translation: MSPDLTAPPIAFDPLPYQDRLEARTLDQIDLAVIHCTELPDLAMARRFGEEVLYEGSQTGNSGHYYIDRDGSLHQYVALDRVAHHVRGYNPRAIGIELVNRGRYPDWLAADHQAMGERYTPEQIEALVSLLLHLQRTLPSLRHIAGHEDLDTTTVAASDDPSVQVQRKLDPGPQFPWAQVMAAVDLERLP
SIO_010081: HIV01_RS01520
subclass of: SO_0000673
so part of: HIV01_RS01520
location: complement(294203..294775)
location: region:294203-294775:-1
so has part: feature:294203-294775:-1:exon

WP_200604523.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:294203-294775:-1:exon

HIV01_RS01525
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01525
old locus tag: HIV01_001525
so part of: sequence
location: 294946..295446
location: region:294946-295446:1
so has part: feature:294946-295446:1:exon
subclass of: SO_0000010

position:294946:1
position: 294946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:295446:1
position: 295446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:294946-295446:1:exon

HIV01_RS01525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01525
old locus tag: HIV01_001525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013535784.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MOSC domain-containing protein
translation: MKLPPADSELGKLMAMLPRQGRVEWIGLRPKREVAMDAVTQVIAQTGAGLVGDRYSGGSGERGITLIQAEHLPVIAALSGHDAVAPATLRRNLVVSGLPLVALKGRRFRIGEVVLEGTDDCDPCSRMEAALGAGGYNAMRGHGGLCARILDGGTIHLGDAVVALQD
SIO_010081: HIV01_RS01525
subclass of: SO_0000673
so part of: HIV01_RS01525
location: 294946..295446
location: region:294946-295446:1
so has part: feature:294946-295446:1:exon

WP_200604524.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:294946-295446:1:exon

HIV01_RS01530
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01530
old locus tag: HIV01_001530
so part of: sequence
location: 295458..295991
location: region:295458-295991:1
so has part: feature:295458-295991:1:exon
subclass of: SO_0000010

position:295458:1
position: 295458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:295991:1
position: 295991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:295458-295991:1:exon

HIV01_RS01530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01530
old locus tag: HIV01_001530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008267929.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSTRGHCILSHGFESGPDATKVTALADVADRLGWSHERPDFTDLDARRDISELGDVHSRLQRLLGLARAAAARGPVVLAGSSLGAYISGLVSLQVPTAGLFLMAPPIKMGPAPRLEAAAVPTSIIHGWHDDLIPASAVVEWARERGSRLLLVNDGHRLTDHVEASADAFASLLSVL
SIO_010081: HIV01_RS01530
subclass of: SO_0000673
so part of: HIV01_RS01530
location: 295458..295991
location: region:295458-295991:1
so has part: feature:295458-295991:1:exon

WP_200604525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:295458-295991:1:exon

HIV01_RS01535
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rlmKL
locus tag: HIV01_RS01535
old locus tag: HIV01_001535
so part of: sequence
location: 295995..298157
location: region:295995-298157:1
so has part: feature:295995-298157:1:exon
subclass of: SO_0000010

position:295995:1
position: 295995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:298157:1
position: 298157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:295995-298157:1:exon

HIV01_RS01535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rlmKL
locus tag: HIV01_RS01535
old locus tag: HIV01_001535
EC number: 2.1.1.173
EC number: 2.1.1.264
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012510557.1
GO function: GO:0003723 - RNA binding [Evidence IEA]; GO:0008990 - rRNA (guanine-N2-)-methyltransferase activity [Evidence IEA]
GO process: GO:0031167 - rRNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL
translation: MKFFASCGKGLEYLLADELVALGCTRATAAMAGANVEGSALDAQRAVLWSRLASRVLWPIAEFDCPDEHALYAGAAAIDWPQHLAQGDTVAVDAHVSGDAITHARYAAQRVKDAVVDVMRARTGSRPDVDVEAPDLRLNLVVRKGRAIVSIDLGGGPMHRRGWRSKQGEAPLKENLAAAVLMRGQWPKVYAAGGALLDPMCGSGTLLIEGALMAADVAPGLQRHGNGVPTRWLGFDASSWQQLVDAARAREATGMNALRPAFFGSDLDPHAIRAAQDNAVLAGLAGVIDWRVGDIRSLEAPGTAESESAPGLVVCNPPYDARLAADAALYRGLGDSLKRTVPEWRASLLCGDAELARATGLRAGKKYQLFNGAIECTLIVCDPVAPPQRERAADEPAPTLSEGAQMVANRLRKNIRKLKSWREREHISCYRAYDADLPEYSAAIDVYVTDEATPRTFLHVQEYAAPADIPEAVQRKRLNELLAAARDVFAVPRENVALKTRARGKGGSKYGQFDSRGELVTVREGDARLRVNLFDYLDTGLFLDHRPMRLRIGAEAEDTRFLNLFGYTGAATVHAAVGRARSTTTVDLSATYLEWCADNLRENNVGGTRHRLVQADALTWLEADTQQYDLIFCDPPTFSNSKRAEDFDVQAEHVRLLRAAVERLADGGVLYFSNNFRRFRLDQAAIDQFAECVDISAQTIPPDFERDARIHRCWRLRRLA
SIO_010081: HIV01_RS01535
subclass of: SO_0000673
so part of: HIV01_RS01535
location: 295995..298157
location: region:295995-298157:1
so has part: feature:295995-298157:1:exon

WP_200604526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:295995-298157:1:exon

HIV01_RS01540
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01540
old locus tag: HIV01_001540
so part of: sequence
location: 298167..298760
location: region:298167-298760:1
so has part: feature:298167-298760:1:exon
subclass of: SO_0000010

position:298167:1
position: 298167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:298760:1
position: 298760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:298167-298760:1:exon

HIV01_RS01540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01540
old locus tag: HIV01_001540
inference: COORDINATES: protein motif:HMM:NF025033.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methyltransferase domain-containing protein
translation: MRRLTLPKGSWTFFRQWLRNPARMAAVAPSGRDLAAAMVTALPEGARRVIELGGGTGAITRALLARGILGRELMVLELNEELHAHLRTRFPQVRIVLGDARDLVQLATGDGYLADGPADAIVSGLGFLSMPRDTQLGILQASFECLREGGRFLQFTYGPQSPVAAEVVEELGLEVERGEFVLLNVPPATVYVISRRA
SIO_010081: HIV01_RS01540
subclass of: SO_0000673
so part of: HIV01_RS01540
location: 298167..298760
location: region:298167-298760:1
so has part: feature:298167-298760:1:exon

WP_200604527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:298167-298760:1:exon

HIV01_RS01545
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01545
old locus tag: HIV01_001545
so part of: sequence
location: 298872..299735
location: region:298872-299735:1
so has part: feature:298872-299735:1:exon
subclass of: SO_0000010

position:298872:1
position: 298872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:299735:1
position: 299735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:298872-299735:1:exon

HIV01_RS01545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01545
old locus tag: HIV01_001545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019662177.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pirin family protein
translation: MSHPDISQDFARIGRVIRGMPASDGAGVRLTRVIGTPQLDMLDPFLMLDEFGTDKPEDYLAGFPDHPHRGFETVTYMLDGRMRHKDNHGNEGVLVPGSVQWMTAGRGLVHSEMPEQHEGRMRGFQLWVNLPASEKMAEPQYQEFAPDRIPQLQPAPGVTVKLIAGRIGDVAGPIQQPATDPVYLDIELAAGTSWQYELPDGHNAFAYAFEGEGTIGDGDDARPLSTQQLAVLNGGRVFKLRAGLKGVRVILVAGRPLREPVARYGPFVMNTKEQIMQAFVDFQEGRF
SIO_010081: HIV01_RS01545
subclass of: SO_0000673
so part of: HIV01_RS01545
location: 298872..299735
location: region:298872-299735:1
so has part: feature:298872-299735:1:exon

WP_200604528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:298872-299735:1:exon

HIV01_RS01550
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: aqpZ
locus tag: HIV01_RS01550
old locus tag: HIV01_001550
so part of: sequence
location: complement(299792..300511)
location: region:299792-300511:-1
so has part: feature:299792-300511:-1:exon
subclass of: SO_0000010

position:299792:-1
position: 299792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:300511:-1
position: 300511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:299792-300511:-1:exon

HIV01_RS01550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: aqpZ
locus tag: HIV01_RS01550
old locus tag: HIV01_001550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019183459.1
GO function: GO:0015250 - water channel activity [Evidence IEA]
GO process: GO:0006833 - water transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aquaporin Z
translation: MIKRLGAEFIGTFWLVLGGCGSAVLAANFGGDGNPLGIGFVGVSLAFGLTVLTGAYALGHISGGHFNPAVSFGLWAGGRFPARDLLPYIIAQVLGGLFAGFILWHIASGTATFAVDPNAAGAFASNGYGSHSPGGYSIAAAFLCEIVMTAMFLVVILGATHPRAPAGFGPLAIGLALTLIHLISIPVTNTSVNPARSTGVAVFAGAAAISQLWLFWVAPIAGGLLGGVIYRWLGDDAQR
SIO_010081: HIV01_RS01550
subclass of: SO_0000673
so part of: HIV01_RS01550
location: complement(299792..300511)
location: region:299792-300511:-1
so has part: feature:299792-300511:-1:exon

WP_200604529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:299792-300511:-1:exon

HIV01_RS01555
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01555
old locus tag: HIV01_001555
so part of: sequence
location: complement(300820..301254)
location: region:300820-301254:-1
so has part: feature:300820-301254:-1:exon
subclass of: SO_0000010

position:300820:-1
position: 300820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:301254:-1
position: 301254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:300820-301254:-1:exon

HIV01_RS01555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01555
old locus tag: HIV01_001555
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSALPVLAGLMFAANAQAQDQGTCPQLPASSGLVWEYKGSGGADFCRALREDGSEAFGLYISAKSPFAPKRGNRAEAGMIDGQSMYWYKGEVAIKPDMQVRETLIELPDGRTAHIWLQASDGQLGNSIMLAQSIRFPATRLSSK
SIO_010081: HIV01_RS01555
subclass of: SO_0000673
so part of: HIV01_RS01555
location: complement(300820..301254)
location: region:300820-301254:-1
so has part: feature:300820-301254:-1:exon

WP_200604530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:300820-301254:-1:exon

HIV01_RS01560
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01560
old locus tag: HIV01_001560
so part of: sequence
location: complement(301507..302367)
location: region:301507-302367:-1
so has part: feature:301507-302367:-1:exon
subclass of: SO_0000010

position:301507:-1
position: 301507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:302367:-1
position: 302367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:301507-302367:-1:exon

HIV01_RS01560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01560
old locus tag: HIV01_001560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019398457.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pirin family protein
translation: MTTIVSPRVHDLGGFQVRRAVPSIQARSVGPFVFVDHMGPAVFEVGRGIDVRPHPHIGLATVTFLWSGTITHRDTLGSYQDINPGDVNWMTAGRGIAHSERTPATLREHEHPLHGMQTWVALPRSEEEASPGFFHHPAASLPQQRRNGSWLRVVAGRGYGEESPVKVYNGTLYVAIDLDADAELPLDDGHAERALYVLEGDAQLDGADIPAMHLVVLDPGTRPKLRARTPVKAMLLGGEPLDGPRHMWWNFVSSSKERIEQAKQDWLEGRFGKVPGDDEFIPLPER
SIO_010081: HIV01_RS01560
subclass of: SO_0000673
so part of: HIV01_RS01560
location: complement(301507..302367)
location: region:301507-302367:-1
so has part: feature:301507-302367:-1:exon

WP_200604531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:301507-302367:-1:exon

HIV01_RS01565
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01565
old locus tag: HIV01_001565
so part of: sequence
location: complement(302465..302863)
location: region:302465-302863:-1
so has part: feature:302465-302863:-1:exon
subclass of: SO_0000010

position:302465:-1
position: 302465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:302863:-1
position: 302863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:302465-302863:-1:exon

HIV01_RS01565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01565
old locus tag: HIV01_001565
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRLTRSLACAALILLLAGCASPVRDAIQVSGNQQFTLRPGERATLPGQSSLRYTGVANDSRCPPTVQCVWAGDAEVKLVFEQAGKDADVVLHSANPAPQPMGPWSLTLVGLERGAAPAATLRLENGEGGGG
SIO_010081: HIV01_RS01565
subclass of: SO_0000673
so part of: HIV01_RS01565
location: complement(302465..302863)
location: region:302465-302863:-1
so has part: feature:302465-302863:-1:exon

WP_200604532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:302465-302863:-1:exon

HIV01_RS01570
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01570
old locus tag: HIV01_001570
so part of: sequence
location: 302959..304533
location: region:302959-304533:1
so has part: feature:302959-304533:1:exon
subclass of: SO_0000010

position:302959:1
position: 302959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:304533:1
position: 304533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:302959-304533:1:exon

HIV01_RS01570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01570
old locus tag: HIV01_001570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011051886.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phospholipase D family protein
translation: MTRKLRWVGITVVVLLVASAASVFSYGRFAHYARGAPSQAIAADRVETPVDRAIAPMTQAHAGEAGLSLINDNLDAFAVRAVSARAAGRSLDLQYYIWKPDLTGNLIVHEVLRAADRGVRVRLLLDDLNSHKKDSVLAALDQHEKVEVRMFNPSRGRASSFMRGVEMLLRGFSLNRRMHNKAWIVDGRIAVVGGRNIGDEYFGASSQSNFMDADLAVIGPPVQETAAIFDAFWNSPSAIPLSALVDSDEVSLQRLRRIVDLEYKSRNAHPYLAKLRQSPTIAAVLRGEKLPRWTRDAHVYSDPPAKAEGAPRKGWLADVLVPAAMAARRELFIISPYFVPGDQGVAALVGMRKRGVHVGVLTNSLAATDVAAVHGGYAPYRLPLLEGGVDLFELMSRGGGGGRGSGSGGSGFGSSDASLHTKAFVADGNVGFVGSFNLDPRSINLNTEMGILFSDRQLSGDLQRTFEAKTSASNSYKLWLDDGELRWRDGSAQPPREWTHEPAVGIGRRAIARVIGWLPVESQL
SIO_010081: HIV01_RS01570
subclass of: SO_0000673
so part of: HIV01_RS01570
location: 302959..304533
location: region:302959-304533:1
so has part: feature:302959-304533:1:exon

WP_200604533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:302959-304533:1:exon

HIV01_RS01575
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01575
old locus tag: HIV01_001575
so part of: sequence
location: complement(304534..305034)
location: region:304534-305034:-1
so has part: feature:304534-305034:-1:exon
subclass of: SO_0000010

position:304534:-1
position: 304534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:305034:-1
position: 305034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:304534-305034:-1:exon

HIV01_RS01575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01575
old locus tag: HIV01_001575
EC number: 5.4.-.-
inference: COORDINATES: protein motif:HMM:NF012521.2
GO function: GO:0016791 - phosphatase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphoglycerate mutase family protein
translation: MKLTLPCLLALALLAGCVTRPPPATTFTLVRHAEKVPDGSKDPELTPAGLARADALAVRLADAPLDAVYSTDFRRTQQTAAPTARGHHLTVITYDAKESAADFSTRLKREHAGQSVLVVGHSNTIPGIASALCSCAVAEMSEAEYDRLTTVRIAADGKATLEEGRQ
SIO_010081: HIV01_RS01575
subclass of: SO_0000673
so part of: HIV01_RS01575
location: complement(304534..305034)
location: region:304534-305034:-1
so has part: feature:304534-305034:-1:exon

WP_200604534.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:304534-305034:-1:exon

HIV01_RS01580
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: mfd
locus tag: HIV01_RS01580
old locus tag: HIV01_001580
so part of: sequence
location: complement(305107..308568)
location: region:305107-308568:-1
so has part: feature:305107-308568:-1:exon
subclass of: SO_0000010

position:305107:-1
position: 305107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:308568:-1
position: 308568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:305107-308568:-1:exon

HIV01_RS01580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: mfd
locus tag: HIV01_RS01580
old locus tag: HIV01_001580
EC number: 3.6.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014090633.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO process: GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcription-repair coupling factor
translation: MPKSDFPTPPLPKAGQQRAWWRAPASPSALAFHIASAARAHAGPVLAVARDNQTAHQLESDLQTLLAGQTEVPVLAFPDWETLPYDIFSPHPDIVSQRLSALHRLPTLKRGIVVVPVQTLLQRLAPLKHIVGGSFDVKLGQRLDLDAEKRRLESAGYRHVPQVLDPGDFAVRGGLLDVYPMGAEQPFRVELLDDEIDTIRAFDPESQRSLDKIDSVHLLPGREVPLDDASLKRALDALRDRFDLDTRRSALYQDLKAGLTPPGIEYYLPLFFDKTATLFDYLGDDMLPVIGDGAFEAAEQFWTNTGERYEQRRHDLERPLLPPDTLYLAPNALRERLNEGNRVEVCGEGHPQRDRAQALGDQPAPALPIAARDHAPADALKSFLGSYPGRVLIAADSAGRREALLELLQAADLRPDVVTGWPAFAPAQSRFAIAVAPFDDGFAISEPAIAVLTERQLFPERASQPRRRRRVGREPEAIIRDLGELSEGAPIVHEDHGVGRYRGLITLEAGGLPGEYLEIEYAKGDRLYVPVAQLHLINRYSGASDETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQAKRQARAGLAIDIDRSMYEPFAAAFPFEETPDQHSAIEAVIRDLGSSQPMDRVICGDVGFGKTEVAVRAAFVAAAAGKQVAVLVPTTLLAEQHYRTMRDRFADWPLKVEVLSRFKTAKEIKAELEKVAEGKIDVVVGTHRLLQPDVRFKDLGAVIVDEEQRFGVRQKEALKALRANVHLLTMTATPIPRTLNMAMAGLRDLSIIATPPAHRLAVQTFVVPWDDAQLREAFQRELSRGGQVYFLHNDVESIGRMQRQLEELVPEARIGVAHGQMPERELERVMLDFHKQRFNVLLSTTIIESGIDIPNANTIIMNRADKFGLAQLHQLRGRVGRSHHRAYAYLVVPDKKSITADARKRLDAIAAMDELGAGFTLATHDLEIRGAGELLGEEQSGQMAEVGFSLYTELLERAVRSIKRGELPDVDGSHARGADVELHVPALIPDDYLPDVHTRLTLYKRISGARDADELRELQVEMIDRFGLLPDAAKHLFAIAELKQRATTLGIRKLDLGEKGGRVQFVEKPNVDPMAIIKLIQGQPKLYRMEGPDKLRMTLELPDAQSRLLAARGIVTALQPA
SIO_010081: HIV01_RS01580
subclass of: SO_0000673
so part of: HIV01_RS01580
location: complement(305107..308568)
location: region:305107-308568:-1
so has part: feature:305107-308568:-1:exon

WP_200604535.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:305107-308568:-1:exon

HIV01_RS01585
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01585
old locus tag: HIV01_001585
so part of: sequence
location: 308764..309228
location: region:308764-309228:1
so has part: feature:308764-309228:1:exon
subclass of: SO_0000010

position:308764:1
position: 308764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:309228:1
position: 309228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308764-309228:1:exon

HIV01_RS01585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01585
old locus tag: HIV01_001585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007509235.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MarR family transcriptional regulator
translation: MKTAATKPSKTKAPQTLDEQLCFALYSTGLALNKVYRKLLGPLGLTYPQYLAMLVLWERDGITVSEIGERLFLDSATLTPLLKRMQTAGLITRTRALDDERQVIIALTQEGRALKAKARTVPADLVCAAECSIDEMVSLKHQLESLRGSLAKNA
SIO_010081: HIV01_RS01585
subclass of: SO_0000673
so part of: HIV01_RS01585
location: 308764..309228
location: region:308764-309228:1
so has part: feature:308764-309228:1:exon

WP_200604536.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:308764-309228:1:exon

HIV01_RS01590
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01590
old locus tag: HIV01_001590
so part of: sequence
location: 309346..309771
location: region:309346-309771:1
so has part: feature:309346-309771:1:exon
subclass of: SO_0000010

position:309346:1
position: 309346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:309771:1
position: 309771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:309346-309771:1:exon

HIV01_RS01590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01590
old locus tag: HIV01_001590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005970066.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: organic hydroperoxide resistance protein
translation: MSLDKVLYTAHATVTGGRDGRAVSSDNVLDVKLTTPRELGGAGGEGTNPEQLFAAGYSACFIGALKVVASREKIAFPADASIEGNVGIGPVGQAFGIQAELKISLPGLSREQAEALVEKAHQVCPYSNATRGNIDVTLTIV
SIO_010081: HIV01_RS01590
subclass of: SO_0000673
so part of: HIV01_RS01590
location: 309346..309771
location: region:309346-309771:1
so has part: feature:309346-309771:1:exon

WP_200604537.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:309346-309771:1:exon

HIV01_RS01595
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01595
old locus tag: HIV01_001595
so part of: sequence
location: complement(309829..310878)
location: region:309829-310878:-1
so has part: feature:309829-310878:-1:exon
subclass of: SO_0000010

position:309829:-1
position: 309829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:310878:-1
position: 310878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:309829-310878:-1:exon

HIV01_RS01595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01595
old locus tag: HIV01_001595
EC number: 2.1.-.-
inference: COORDINATES: protein motif:HMM:NF013087.2
GO function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent methyltransferase
translation: MTVNEERLNQFLGHAVGDLGAAMSATLMLVGDQLGLYRALAKRPMTSVQLASETDTNERYVREWLGNQAAGGYVEYDAAADTYSLSPEQALCLADPGGPVDLPGAYSLVEATFHALERTKENFRTGKGMEWGEHHPCLFHGTERFFRAGYNANLITSWLPALDGVLEKLKAGGKAADVGCGHGASTTLMAQAFPKSSFIGYDYHAGSIEVASERARQARVDNAYFEVADATSYSGNHFDLIAFFDCLHDMADPVGAARHALHALKPDGTCLLVEPFAGDSVEENLNPVGRVYYGASSQICVPVSLARNGPALGAQAGEARLRAVLEEAGFKRFRRATQTPFNLVLEARP
SIO_010081: HIV01_RS01595
subclass of: SO_0000673
so part of: HIV01_RS01595
location: complement(309829..310878)
location: region:309829-310878:-1
so has part: feature:309829-310878:-1:exon

WP_200604538.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:309829-310878:-1:exon

HIV01_RS01600
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01600
old locus tag: HIV01_001600
so part of: sequence
location: complement(310984..311535)
location: region:310984-311535:-1
so has part: feature:310984-311535:-1:exon
subclass of: SO_0000010

position:310984:-1
position: 310984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:311535:-1
position: 311535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:310984-311535:-1:exon

HIV01_RS01600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01600
old locus tag: HIV01_001600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019301140.1
GO function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MAARERLPPWHERMRLPNGREVLIRPIRPEDAEPIRASFSLLEPEEVRQRFLYALKELTTDMADRMTRINPKTEFALVAAEPLPPGEALVGAVARIAIDENGKDAEFAILVSHYVAGMGLGRYLMTRLVKWARGKKLDRVYGDVFEHNQAMLSLAESLGFQREFQQDAPGLIRVALDLKARKA
SIO_010081: HIV01_RS01600
subclass of: SO_0000673
so part of: HIV01_RS01600
location: complement(310984..311535)
location: region:310984-311535:-1
so has part: feature:310984-311535:-1:exon

WP_200604539.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:310984-311535:-1:exon

HIV01_RS01605
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01605
old locus tag: HIV01_001605
so part of: sequence
location: 311649..311999
location: region:311649-311999:1
so has part: feature:311649-311999:1:exon
subclass of: SO_0000010

position:311649:1
position: 311649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:311999:1
position: 311999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:311649-311999:1:exon

HIV01_RS01605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01605
old locus tag: HIV01_001605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018974876.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MmcQ/YjbR family DNA-binding protein
translation: MNEDTLRTWLEPWPGVEESVKWEDDLVFSLAGKMFCVICLRGPKAGSMSFKVEDERFLELTERPGFIPAPYLARAHWVYIEQPKRVPAKELRDLVRRSYELVREKLPKKTQRELAD
SIO_010081: HIV01_RS01605
subclass of: SO_0000673
so part of: HIV01_RS01605
location: 311649..311999
location: region:311649-311999:1
so has part: feature:311649-311999:1:exon

WP_200604540.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:311649-311999:1:exon

HIV01_RS01610
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01610
old locus tag: HIV01_001610
so part of: sequence
location: 312117..313028
location: region:312117-313028:1
so has part: feature:312117-313028:1:exon
subclass of: SO_0000010

position:312117:1
position: 312117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:313028:1
position: 313028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:312117-313028:1:exon

HIV01_RS01610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01610
old locus tag: HIV01_001610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015447274.1
GO function: GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation diffusion facilitator family transporter
translation: MAGGGDSTRAILFALGANFAIAVAKGVAAFFTGSSAMLAETVHSLADCGNQLLLLLGMRQARKPPSPEYPLGYGKAIYFWSFLVAVMLFTVGGMFSLYEGIHKLQHPEQIKHWYWAAGVLTFGIVAEAVSMRACLVEVNKARGNRSLWQWFRESRQAELVVIFGEDLAALFGLVFALIAVLLAAVTGNPLWDAIGTITIGALLIVVAVFVAIEVKAMLIGQSVDPARQKQMREFLDARPEITQVISLITLQLGNEVLVSVQAHMREEHSVAALTEQINTVERALKQSFPEVRWSFFEPDKKMD
SIO_010081: HIV01_RS01610
subclass of: SO_0000673
so part of: HIV01_RS01610
location: 312117..313028
location: region:312117-313028:1
so has part: feature:312117-313028:1:exon

WP_200604541.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:312117-313028:1:exon

HIV01_RS01615
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rlmJ
locus tag: HIV01_RS01615
old locus tag: HIV01_001615
so part of: sequence
location: complement(313095..313955)
location: region:313095-313955:-1
so has part: feature:313095-313955:-1:exon
subclass of: SO_0000010

position:313095:-1
position: 313095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:313955:-1
position: 313955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:313095-313955:-1:exon

HIV01_RS01615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rlmJ
locus tag: HIV01_RS01615
old locus tag: HIV01_001615
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002802763.1
GO function: GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
GO process: GO:0070475 - rRNA base methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ
translation: MNYRHAFHAGNHADVLKHIALLAICDALVAKPAPVFALDTHAGRGLYALDSNSAQRTGEAEGGIGRLIAEAPKHPAIARYLAAIRACRHEHGQASYPGSPWLLAHALREQDRIAACELLPEEAGQLKSVFERDPRVAVHARDGYAAMKALLPARIGETRYNRGLVLIDPPYEAQLEEFDTAIAALREGISRWPQGTFALWYPIKLRRALQPFYRRAAAIPAKSSFVAELLVRADDSPLRMNGSGLLVLNPPWQLDQSLAGVLPLLSKVLGEGPGAASRLEWLVRAA
SIO_010081: HIV01_RS01615
subclass of: SO_0000673
so part of: HIV01_RS01615
location: complement(313095..313955)
location: region:313095-313955:-1
so has part: feature:313095-313955:-1:exon

WP_200604542.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:313095-313955:-1:exon

HIV01_RS01620
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: creB
locus tag: HIV01_RS01620
old locus tag: HIV01_001620
so part of: sequence
location: 314078..314791
location: region:314078-314791:1
so has part: feature:314078-314791:1:exon
subclass of: SO_0000010

position:314078:1
position: 314078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:314791:1
position: 314791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:314078-314791:1:exon

HIV01_RS01620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: creB
locus tag: HIV01_RS01620
old locus tag: HIV01_001620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019184456.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: two-component system response regulator CreB
translation: MHILLVEDEPAIADIVLHALRADGFEASHCLTGRDALALARGQAFDLAVLDVGLPDIGGFALCRELRRGRDLPVIFLTAHNAEAERILGLEIGGDDYVTKPFSPRELVARVRVVLRRLHHETPAAAGFVHDVEGKRITFRRQLLDLTRYEYGLLAALLQRPGAVLSRAQLMDRVWGNALDSGDRTVDTHIKTLRAKLREVAPDLDPIRTHRGLGYSLEVDRREADPREADPREVPRE
SIO_010081: HIV01_RS01620
subclass of: SO_0000673
so part of: HIV01_RS01620
location: 314078..314791
location: region:314078-314791:1
so has part: feature:314078-314791:1:exon

WP_200604543.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:314078-314791:1:exon

HIV01_RS01625
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: creC
locus tag: HIV01_RS01625
old locus tag: HIV01_001625
so part of: sequence
location: 314788..316215
location: region:314788-316215:1
so has part: feature:314788-316215:1:exon
subclass of: SO_0000010

position:314788:1
position: 314788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:316215:1
position: 316215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:314788-316215:1:exon

HIV01_RS01625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: creC
locus tag: HIV01_RS01625
old locus tag: HIV01_001625
EC number: 2.7.13.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014090630.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO process: GO:0016310 - phosphorylation [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: two-component system sensor histidine kinase CreC
translation: MKIGLRIFLGYFLIVALAGLLLAQVFVAEVKPGVRQAMEDTLVDTANVLAELASDDFIAGRIDDGTFARRVRAMARRDYGARIWGFGKRSSQYRIYVTDARGIVVFDSSGRDVGADYSRWNDVYLTLRGKYGARSTRSAYSDPNSTVMHVAAPIRDGQGKVIGVLTVAKPNSAIAPFIERSQGVVLRWGAVLLGVSLLVGLVAAWWLSRQLSELRRYANGVTAGERVTLPHAAGEFGDLGQALETMRVRLEGKQYVEQYVHTLTHEMKSPLAAIRGSAELLEGPLEEADRIRFAAAIRSQSDRLAQMIDKMLALAAVEHRQRLEQPEPVALAVLAEEAIAQCTTRLARSQVTLDVDLPADLPTIDGDPFLLRQALINLIENAADFAPAGSRIELGLQREGERQVLEVRDRGAGIPDYARDRVFERFYSLPRPGNGSRSSGLGLCFVAEVATLHGGEVSLRNREGGGAVARLSLPG
SIO_010081: HIV01_RS01625
subclass of: SO_0000673
so part of: HIV01_RS01625
location: 314788..316215
location: region:314788-316215:1
so has part: feature:314788-316215:1:exon

WP_200604544.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:314788-316215:1:exon

HIV01_RS01630
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: creD
locus tag: HIV01_RS01630
old locus tag: HIV01_001630
so part of: sequence
location: 316308..317681
location: region:316308-317681:1
so has part: feature:316308-317681:1:exon
subclass of: SO_0000010

position:316308:1
position: 316308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:317681:1
position: 317681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316308-317681:1:exon

HIV01_RS01630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: creD
locus tag: HIV01_RS01630
old locus tag: HIV01_001630
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014161251.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cell envelope integrity protein CreD
translation: MRLAFKIVMVVAMTIAILVPLLMIRGVIDDRQNYRAQAVADIARSYAGAQSFAGPVLVVPYTETVEVEEPDKYNIVHKVQREVTHHWTFFPTTLDVRGPMRPSTRKRGLHEVRVYEWHGKAKAHFEALIPAPEAVPRRIGKPWLSYGIADVRGLRASPQLRINGRSQVVEEGLGSRSGSGLHVRLAEPQAGDVLRLDTELDLVLGGTESLALVPLAKSNRFGLQSSWQHPSFGGSSPRHELDASGFKADWEIASVATNAQRQYQQGQILPDLRGGIADMDGIDAVGVSLIDPVDIYTQADRATKYGLLFVLLTFVGFFLFELIKQLPIHPIQYGLVGLALAIFFLLLVSLSEHIAFAIAYLVASIACIGLIGFYLVAVLRSVGRGLGFAAMLATLYAALYGLLVSEDNALVLGAGLLFLVLAAIMVVTRRVDWYQLAGSRPAPRDPGRDAVGRHEPA
SIO_010081: HIV01_RS01630
subclass of: SO_0000673
so part of: HIV01_RS01630
location: 316308..317681
location: region:316308-317681:1
so has part: feature:316308-317681:1:exon

WP_200604545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:316308-317681:1:exon

HIV01_RS01635
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01635
old locus tag: HIV01_001635
so part of: sequence
location: 317757..318383
location: region:317757-318383:1
so has part: feature:317757-318383:1:exon
subclass of: SO_0000010

position:317757:1
position: 317757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318383:1
position: 318383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317757-318383:1:exon

HIV01_RS01635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01635
old locus tag: HIV01_001635
EC number: 2.3.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005993468.1
GO function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MDAKAPETPSALDVRCYSGAAISPWLDDLARLRIAVFRDWPYLYDGDADYEAQYLQTYLQSPRSIVVLAFDGDQVVGASTGMPLAAESRTFLEAFDGVSVDPQEVFYCGESVLLPQYRGRGIGHRFFDEREAHARSYGDYAWTAFCAVDREAGHPRRPAFHRGNEAFWSKRGYRPRPELQAHLTWREVGGAVADHSLTFWLRPLERTR
SIO_010081: HIV01_RS01635
subclass of: SO_0000673
so part of: HIV01_RS01635
location: 317757..318383
location: region:317757-318383:1
so has part: feature:317757-318383:1:exon

WP_200604546.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:317757-318383:1:exon

HIV01_RS01640
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01640
old locus tag: HIV01_001640
so part of: sequence
location: 318380..319300
location: region:318380-319300:1
so has part: feature:318380-319300:1:exon
subclass of: SO_0000010

position:318380:1
position: 318380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:319300:1
position: 319300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:318380-319300:1:exon

HIV01_RS01640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01640
old locus tag: HIV01_001640
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014502631.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbon-nitrogen hydrolase family protein
translation: MSESMKSEGTLKVAVAKYSVGAPDDFAAFAGKQARWLDEARQQGAQMAVLPEYLALELGAMFDEATRGDLHASLAALQAWHRPWLELFSRLARERHMHVVAGTFLLDLGRGRYRNRSYTFAPDGSHVWQDKLRLTGFEKSAGVIESGDELKVFETGPVRSAVSVCYDSEFPLPVRAQCEAGARLLVVPSCTDTQAGATRVRVGCLARALENRCFVAQSVTAGDAPWSPALDTNTGEAALIAPMDVGLPHDGMIVQTRGDQHWAVATLDFAALEASRAQAQVANDRDWASQYFPSVARAKVVRAVAA
SIO_010081: HIV01_RS01640
subclass of: SO_0000673
so part of: HIV01_RS01640
location: 318380..319300
location: region:318380-319300:1
so has part: feature:318380-319300:1:exon

WP_245156885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:318380-319300:1:exon

HIV01_RS01645
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01645
old locus tag: HIV01_001645
so part of: sequence
location: complement(319313..319891)
location: region:319313-319891:-1
so has part: feature:319313-319891:-1:exon
subclass of: SO_0000010

position:319313:-1
position: 319313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:319891:-1
position: 319891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319313-319891:-1:exon

HIV01_RS01645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01645
old locus tag: HIV01_001645
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009607722.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphatase PAP2 family protein
translation: MNRHSLHRMLHRPSLHKRLLDGDSGWCLRANRWGEGGRSRSYFALVSRLGDGVFWYALMAALIVVDGLDGLAASAHLAATGVIALTLYKLLKRWTRRPRPFASDQRIHAWVAPLDEFSFPSGHTLHAVAFSLVAMAHYPMLAWLLVPFTASVAASRVVLGLHYPSDVLAATAIGTSLAGFSLWLVPGVSLFG
SIO_010081: HIV01_RS01645
subclass of: SO_0000673
so part of: HIV01_RS01645
location: complement(319313..319891)
location: region:319313-319891:-1
so has part: feature:319313-319891:-1:exon

WP_245156886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:319313-319891:-1:exon

HIV01_RS01650
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01650
old locus tag: HIV01_001650
so part of: sequence
location: complement(319888..321075)
location: region:319888-321075:-1
so has part: feature:319888-321075:-1:exon
subclass of: SO_0000010

position:319888:-1
position: 319888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:321075:-1
position: 321075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319888-321075:-1:exon

HIV01_RS01650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01650
old locus tag: HIV01_001650
EC number: 2.4.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012479258.1
GO function: GO:0016757 - glycosyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 1 protein
translation: MRYAIVSETYPPEINGVALTVQGLELGLRARGHDVHVVRPRQGEDDSATLHELLVPGAPLPRYPGLRIGFPATRRLREAWQAMRPDAIYVATEGPLGWSALRAARRLDIPAATGFHTRFDEYMRDYGVAFLAQTALRWMRRFHNSADATLVPTRELVDFLQGQRFDNVVRLPRAVDTAQFDPQRRDFGLRAQWGLGDDGFAAIYVGRIAAEKNLDLAVRAFRSLQSARPGARFVWIGDGPARAKLEQDNPDFIFCGVQRGAELARHFASGDLFVFPSLSETFGNVTLEALASGVPTVAFDYGAAREYLRDGVHGAAIANGDEAGFIAACTRIAGDDLSRSAMRMATRQAVASLRPEQVATDFDALLQDLVQARRTTGIAPLPSIPPSSPSEQEAS
SIO_010081: HIV01_RS01650
subclass of: SO_0000673
so part of: HIV01_RS01650
location: complement(319888..321075)
location: region:319888-321075:-1
so has part: feature:319888-321075:-1:exon

WP_200604547.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:319888-321075:-1:exon

HIV01_RS01655
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01655
old locus tag: HIV01_001655
so part of: sequence
location: 321283..322821
location: region:321283-322821:1
so has part: feature:321283-322821:1:exon
subclass of: SO_0000010

position:321283:1
position: 321283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:322821:1
position: 322821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321283-322821:1:exon

HIV01_RS01655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01655
old locus tag: HIV01_001655
inference: COORDINATES: protein motif:HMM:NF016252.2
GO function: GO:0030246 - carbohydrate binding [Evidence IEA]
GO process: GO:0009250 - glucan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glucan biosynthesis protein G
translation: MQRREVLLAGLSSPLMSLLSGAPARAFAAPAAATPFDADTVAALARALAAKPFVPQSKQLPASLEKIGYDQYRSIRFNPAQALWRGDKVPFQAQFFHRGFFFRDRVDIHDVADGVATPVVYRPAQFTFDGTAAPKENDLGYAGFRLHYPLNRPEYFDEVCAFLGASYFRAVAKGQAYGLSARGLALKTGAPAGEEFPVFRGFWLERPASGADHAIVHALLDSPSVAGAYRFVIRPGVETVFDVSVRLYPRVALDQVGIAPLTSMFQFDSNDRVGIDDYRPAVHDSDGLGLVNGSGEQIWRPLQNPSVLQESAFEDVNPRGFGLMQRKRAFADYADSEAHYEKRPSLWIEPQGEWGAGAVHLFELPTADEFHDNIVSFWRPKQALAAGKEHRFDYRMHWCDQHAWLPQLATVTRTRVGAVVAGSAAQRGSRQFVIDFAGGRLDGMGDGAPVRANVTAGKGKVANVTAHANAGGGGWRLAFELQPGSERSIELRAVLGDASGPLSETWLYRWTA
SIO_010081: HIV01_RS01655
subclass of: SO_0000673
so part of: HIV01_RS01655
location: 321283..322821
location: region:321283-322821:1
so has part: feature:321283-322821:1:exon

WP_207527051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:321283-322821:1:exon

HIV01_RS01660
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: mdoH
locus tag: HIV01_RS01660
old locus tag: HIV01_001660
so part of: sequence
location: 322827..324734
location: region:322827-324734:1
so has part: feature:322827-324734:1:exon
subclass of: SO_0000010

position:322827:1
position: 322827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:324734:1
position: 324734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:322827-324734:1:exon

HIV01_RS01660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: mdoH
locus tag: HIV01_RS01660
old locus tag: HIV01_001660
EC number: 2.4.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014159779.1
GO function: GO:0016758 - hexosyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glucans biosynthesis glucosyltransferase MdoH
translation: MTITPESGAATGAPAPAQWLPAEAPLPMPVQTLREGRLANPVLPTTPGAMAWRRTLVIGGAALLTLIAAYQIWWVLRGSGTDVLEGLLLLLFVALFAWIAQAFVSAVAGFILIVTRRGGRLGLTRQGELPTLASRTALLMPTYNEEPERLLAGLQAIYESLQATGQLAKFDFFVLSDTTDAEIRGAEARAFASLRERTGGHANLFYRHRSDNHERKAGNIAEWVRRFGGAYPQMLILDADSLMTGETIVRLAGAMEGHPDVALIQTLPMIVNGNTLFARMQQFAGRVYGPVIAHGIAWWHGAESNYWGHNAIIRTRAFADQGGLPELFGIKPFRGTVLSHDFVEAALLRRGGWALHMVPGLGGSYEEGPPSLTDMLVRDRRWCQGNLQHSAVLPAKGLHWVSRWHLMMGIGHYFTSPMWAMLMLIGLAIPLQKAGLAWDSLKLPGFSPTAYWREQDPERFVWVFFLTMAVLLAPKFMGYLTLFFDRDTCRGCGGAIRAFLSMVLETLLAALMAPVTMYVQSRGVAEVLAGKDSGWDAQRRDDGTLPLSGLVRNYAGVTVLGVMAGWMAYMISPSLAAWMAPVILGLFLSIPIVALTSTRAAGLFLRRIGIFSIPEEHTPPQVLVRAAKLREALHK
SIO_010081: HIV01_RS01660
subclass of: SO_0000673
so part of: HIV01_RS01660
location: 322827..324734
location: region:322827-324734:1
so has part: feature:322827-324734:1:exon

WP_245156887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:322827-324734:1:exon

HIV01_RS01665
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01665
old locus tag: HIV01_001665
so part of: sequence
location: complement(324775..325404)
location: region:324775-325404:-1
so has part: feature:324775-325404:-1:exon
subclass of: SO_0000010

position:324775:-1
position: 324775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:325404:-1
position: 325404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:324775-325404:-1:exon

HIV01_RS01665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01665
old locus tag: HIV01_001665
inference: COORDINATES: protein motif:HMM:NF014573.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)H-dependent oxidoreductase
translation: MKKILHITCSPRGTASESERLSRRIVDRLLQSERLAMVVRRHLGDGSLAHVDRDYATSQSSSHDVSRDGSMAQSETLIRELEEADYVVIGTPMHNLAVPSVLKAWIDHIVRARRTFEISAAGKIGLLHDRPVFIAVASGGWFAGERARQPDFLTPYLRAILATIGLHDVTFFAVQGTSAAPERVAETRESTERELQAHFAGVDVTGLIA
SIO_010081: HIV01_RS01665
subclass of: SO_0000673
so part of: HIV01_RS01665
location: complement(324775..325404)
location: region:324775-325404:-1
so has part: feature:324775-325404:-1:exon

WP_200604549.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:324775-325404:-1:exon

HIV01_RS01670
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01670
old locus tag: HIV01_001670
so part of: sequence
location: 325470..326951
location: region:325470-326951:1
so has part: feature:325470-326951:1:exon
subclass of: SO_0000010

position:325470:1
position: 325470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:326951:1
position: 326951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:325470-326951:1:exon

HIV01_RS01670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01670
old locus tag: HIV01_001670
inference: COORDINATES: protein motif:HMM:NF012382.2
GO function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PLP-dependent aminotransferase family protein
translation: MPQSHEVEQWLGHTGRSEVTQMPAARPGLTSPLDASATTPYYRQIYDRFRDAIAAGTLKPGDRVPSVRGLMHELGLARGTIETAYSLLAAEGYIQARGQAGTIVTPDLKPRSPVRAPPPSDVRLASTSFRPDSILPLQMGLPALDAFPRKVWARLGARCVRTMPAASMVHPAVHGLPELRTQIAAYLQVARGIHCSPSQVFVTSGYRHSFLLVSQALLKAGDRVWLEDPGYPPTRELLAHLGMTSVPVPVDRDGMVVGDALKRAPQARAAVVTPAHQSPLCVSLSLPRRLELLDWARRRNAWIVEDDYDGEYRYVSRPLPALKSLDRDGRVLYAGTFSKVLLPSLRLAYLVVPEAQVERFEQINQAFSGGSPELTQSIVATFMREGHFARHIQRMRKLYAQRRDATAAGLEHVLRPHLRIDAQPGGMHLILRLQGKRSDRQLVARMLSAGMYAEALTDWSAGGRPASALLVNFTNVASQDAAQALGRRILDLL
SIO_010081: HIV01_RS01670
subclass of: SO_0000673
so part of: HIV01_RS01670
location: 325470..326951
location: region:325470-326951:1
so has part: feature:325470-326951:1:exon

WP_200604550.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:325470-326951:1:exon

HIV01_RS01675
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01675
old locus tag: HIV01_001675
so part of: sequence
location: 327077..327532
location: region:327077-327532:1
so has part: feature:327077-327532:1:exon
subclass of: SO_0000010

position:327077:1
position: 327077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:327532:1
position: 327532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:327077-327532:1:exon

HIV01_RS01675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01675
old locus tag: HIV01_001675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005417855.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carboxymuconolactone decarboxylase family protein
translation: MTTRIDYAKISPDTYKAFGNVYMNVHKGALAKELIDLVYLRVSQINGCAYCIDMHSRDLLKSGLPVEKLVLVPVWHDAGNVFGVRERAALAWAESVTRVADTGVPDAAYEAATAEFNDKELADLTYAIGLMNAFNRFGIAFRSTPAASAKA
SIO_010081: HIV01_RS01675
subclass of: SO_0000673
so part of: HIV01_RS01675
location: 327077..327532
location: region:327077-327532:1
so has part: feature:327077-327532:1:exon

WP_200604551.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:327077-327532:1:exon

HIV01_RS01680
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01680
old locus tag: HIV01_001680
so part of: sequence
location: 327546..327866
location: region:327546-327866:1
so has part: feature:327546-327866:1:exon
subclass of: SO_0000010

position:327546:1
position: 327546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:327866:1
position: 327866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:327546-327866:1:exon

HIV01_RS01680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01680
old locus tag: HIV01_001680
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019464985.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: multidrug efflux SMR transporter
translation: MAWTLLVLAGVLEIAFACFLKASAGFTQPWPALLTVVTGLSSVVLLASALRTLPVGTGYAVWTGIGAAGTAILGIVMLGESAAPSRMLCVGLILAGVIGLKLVSTG
SIO_010081: HIV01_RS01680
subclass of: SO_0000673
so part of: HIV01_RS01680
location: 327546..327866
location: region:327546-327866:1
so has part: feature:327546-327866:1:exon

WP_200604552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:327546-327866:1:exon

HIV01_RS01685
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: ppx
locus tag: HIV01_RS01685
old locus tag: HIV01_001685
so part of: sequence
location: complement(327891..329420)
location: region:327891-329420:-1
so has part: feature:327891-329420:-1:exon
subclass of: SO_0000010

position:327891:-1
position: 327891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:329420:-1
position: 329420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:327891-329420:-1:exon

HIV01_RS01685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: ppx
locus tag: HIV01_RS01685
old locus tag: HIV01_001685
EC number: 3.6.1.11
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011036174.1
GO function: GO:0004309 - exopolyphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO process: GO:0006798 - polyphosphate catabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: exopolyphosphatase
translation: MSDAFPTSKLPLADGDLLAAVDMGSNSFHMVVARYVLGQLRIVDRLRETVRMAEGLDRRGGLSPEVRQRALDCLARFGQRIRDIPPQRVRAIATNTVRRLAVPQAFLMPAEAALGHAIEVVAGREEARLIYLGVAHAQPSKPGELRLVIDIGGGSTECIIGSGFEAIERESLQVGCIATTRRFFENGKLSKKKWRDALTEVTAEFQQFAGTYRALGWDEALGSSGTNKAIGDICAAMKLTKGAVTAEALPVLRDRLLQADRIDAIELPGLSSERRPVIAGGVLILEAAFDALGLKRMAVSKAAMREGVLYDMLGRGGVDDPRDAAVAALMQRYGIDDGQARRVEATALRMFDQIAQAWQLDADDRLMLQRASRLHELGLAIAHSQYHVHGAYVVENSDIAGFSRQQQQFLAALVRTHRRGIPKSAFDALPDRLLSSARRLAALLRLAVLLHRAHEADPIPQLDARADGNALTLGMSRRWIDMRPLVRADLEGEPQDMAGLGVVLKLEAI
SIO_010081: HIV01_RS01685
subclass of: SO_0000673
so part of: HIV01_RS01685
location: complement(327891..329420)
location: region:327891-329420:-1
so has part: feature:327891-329420:-1:exon

WP_200604553.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:327891-329420:-1:exon

HIV01_RS01690
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: ppk1
locus tag: HIV01_RS01690
old locus tag: HIV01_001690
so part of: sequence
location: complement(329490..331589)
location: region:329490-331589:-1
so has part: feature:329490-331589:-1:exon
subclass of: SO_0000010

position:329490:-1
position: 329490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:331589:-1
position: 331589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:329490-331589:-1:exon

HIV01_RS01690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: ppk1
locus tag: HIV01_RS01690
old locus tag: HIV01_001690
EC number: 2.7.4.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018971370.1
GO component: GO:0009358 - polyphosphate kinase complex [Evidence IEA]
GO function: GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO process: GO:0006799 - polyphosphate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polyphosphate kinase 1
translation: MNAAVVTPAVDAPSESDPLRDPGLYFNRELSQLDFNFRVLAQAQDATVPLLERLKYLCISCTNLDEFFEIRAGTLRHAQDLGIATGADGLSPATVLARIHERAAQLVQAQYECWNQVLRPALWDGGVRVLGRDAWDENQARWLRDYFRDEIMPVLSPLGLDPAHPFPKILNKSLNIVVVLKGKDAFGREGHLAIVRAPRSLPRIIQIPEEVGGGKHDFVFLSAVLSAFVDEMFPGMQVKGAYQFRVTRNSELIVDEDEVENLALALRDELVGRGYLRAVRLEIAEQCPDDIVRTLLENFDLTENAVYRINGPVNLNRVIQVYDLVQRPELKFPPFQPRQLSGIEAMFDKVAEGDVLLHHPFEAFTPVLELLRQASEDPNVLAIKQTLYRTGKDSMIVDSLVQAARNGKDVTVVVELRARFDEEANLGLADRLQDAGVQVVYGVVGYKTHAKMMLIVRREGRKLRRYVHMGTGNYHSGTARGYTDFGLITADPDIGADVHMIFQQLSGLAPTIKLKRLLQSPFTLHAGVLKRIDRETRHAKAGKPARIIAKMNALNEPQVVRALYLASQAGVQIDLIVRGACTVRPGMPGISENIRVRSIVGRFLEHHRVYWFANDGAPDLFCSSADWLERNLLRRIETGFPVLSPDLAKRVYNEALENYLNDNVNAWELQTDGDYVRVTPSEGAPAHSAQAWLLSKICA
SIO_010081: HIV01_RS01690
subclass of: SO_0000673
so part of: HIV01_RS01690
location: complement(329490..331589)
location: region:329490-331589:-1
so has part: feature:329490-331589:-1:exon

WP_200604554.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:329490-331589:-1:exon

HIV01_RS01695
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: phoR
locus tag: HIV01_RS01695
old locus tag: HIV01_001695
so part of: sequence
location: complement(331586..332917)
location: region:331586-332917:-1
so has part: feature:331586-332917:-1:exon
subclass of: SO_0000010

position:331586:-1
position: 331586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:332917:-1
position: 332917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:331586-332917:-1:exon

HIV01_RS01695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: phoR
locus tag: HIV01_RS01695
old locus tag: HIV01_001695
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017917390.1
GO function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphate regulon sensor histidine kinase PhoR
translation: MPPRARSAWFRTLGQLALILAIAAVVGLAIGQPWPVITFAALGVVAWHYWRLRNVLVRLTARQRLTPPLGEGIWNELDRLLHRSQSEMRGRKKRLIDMLRAYRAAAAALPDAIVVVERNSQRIQWFNEAAISLLQLKYPRDIGGPIVQRLQPLQLSHWLASGRNAETLEVASPWNPAATLSLRLIPYSDDLWLLVARDVSRLLQLEQMRRDFVANVSHELRTPLTVVHGYLDMLDPAEHPDWAPMLAEMQRQSQRMTQLVEDLLTLSRLESQDSLPAEETVAMSPMLTTLRREAVALSQGRHEILLEDAAAVDLWGSNKELHSAFSNLVGNAIRYTPAGGTIRIRFRPEGKGAVLEVADSGYGIPAAHLPRITERFYRVSTSRSRESGGTGLGLSIVKHVLNLHQARLEISSEVGRGSTFSCHFGADRVRPREDLALSFEALP
SIO_010081: HIV01_RS01695
subclass of: SO_0000673
so part of: HIV01_RS01695
location: complement(331586..332917)
location: region:331586-332917:-1
so has part: feature:331586-332917:-1:exon

WP_200604555.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:331586-332917:-1:exon

HIV01_RS01700
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: phoB
locus tag: HIV01_RS01700
old locus tag: HIV01_001700
so part of: sequence
location: complement(333076..333783)
location: region:333076-333783:-1
so has part: feature:333076-333783:-1:exon
subclass of: SO_0000010

position:333076:-1
position: 333076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:333783:-1
position: 333783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:333076-333783:-1:exon

HIV01_RS01700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: phoB
locus tag: HIV01_RS01700
old locus tag: HIV01_001700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004084660.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
GO process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphate regulon transcriptional regulator PhoB
translation: MQKRILIVEDEPAIRDMVSFALRKGEYDPVHAGDAREAQAAIADRVPDLILLDWMLPGTSGLELARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVLRRSREDDEDGSVGIGPLRIDGAAHRVFAAADGSDQPVQIGPTEYRLLHFFMTHPERVYTRTQLLDHVWGGSVYVEERTVDVHIRRLRKTLEPHRLDGMVQTVRGAGYRFSASLAA
SIO_010081: HIV01_RS01700
subclass of: SO_0000673
so part of: HIV01_RS01700
location: complement(333076..333783)
location: region:333076-333783:-1
so has part: feature:333076-333783:-1:exon

WP_200604556.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:333076-333783:-1:exon

HIV01_RS01705
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01705
old locus tag: HIV01_001705
so part of: sequence
location: complement(333922..335571)
location: region:333922-335571:-1
so has part: feature:333922-335571:-1:exon
subclass of: SO_0000010

position:333922:-1
position: 333922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:335571:-1
position: 335571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:333922-335571:-1:exon

HIV01_RS01705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01705
old locus tag: HIV01_001705
EC number: 3.4.24.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005412370.1
GO function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M48 family metalloprotease
translation: MALLTAALTLAVASVCAPAQESNLPDIGSSAGELLTPRQQEAYGAMMLAQLRHYDYLLEDPLIDSWLDTLGTRLAANSDRPRQPFTFFMLRERQINAFATLGGYIGVNSGLVLAAEREDEVAGVLSHEIAHVTQQHVLRGAERAQRDQLPILLAMLGAIVAAQAAGGNSDDDAAQAAMASAMGLMQQRQIDYTRSNESEADRLGIQTLARSHYDPEAMADFFATLQARSRSNGANYWGESPDWLMTHPVTITRITEAKERAARIKREQGGVAEVCVRDPDGPPQCRTDSTAKPQYSLDGSNNPLLPPSLDVGAQLNAAAQSGGTGRFEFARERLRVLSADSPGDALREYERLAGGKKFTDAQRYGQALARLRGNQAAVAATTLAELLAEHPGDMWLNLAMGQAEARSGKAAAATTRFETMLRQTPNSRAVVLTYAEVLSERNTVEAGKRAQAVLRPLLGNSGNDAIFQSTFARACEIAGDPIRAGEAYAEAAYLNGRPEQALVQLNTLKRRSDLDYYARARIESRIAAITPTVLELKRQGIRDEDLRRQ
SIO_010081: HIV01_RS01705
subclass of: SO_0000673
so part of: HIV01_RS01705
location: complement(333922..335571)
location: region:333922-335571:-1
so has part: feature:333922-335571:-1:exon

WP_245157027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:333922-335571:-1:exon

HIV01_RS01710
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: grxC
locus tag: HIV01_RS01710
old locus tag: HIV01_001710
so part of: sequence
location: 335784..336089
location: region:335784-336089:1
so has part: feature:335784-336089:1:exon
subclass of: SO_0000010

position:335784:1
position: 335784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:336089:1
position: 336089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:335784-336089:1:exon

HIV01_RS01710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: grxC
locus tag: HIV01_RS01710
old locus tag: HIV01_001710
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007968962.1
GO function: GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glutaredoxin 3
translation: MSSTASAAPGTGSSSAPEITIYTTAICPYCIAAKNFLKSKNQTWTEVRIDLDPSQRELMLSRARRTSVPQIFIGDTHVGGYDDMIALHRAGGLEPLLAGAA
SIO_010081: HIV01_RS01710
subclass of: SO_0000673
so part of: HIV01_RS01710
location: 335784..336089
location: region:335784-336089:1
so has part: feature:335784-336089:1:exon

WP_245156888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:335784-336089:1:exon

HIV01_RS01715
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01715
old locus tag: HIV01_001715
so part of: sequence
location: 336086..336487
location: region:336086-336487:1
so has part: feature:336086-336487:1:exon
subclass of: SO_0000010

position:336086:1
position: 336086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:336487:1
position: 336487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:336086-336487:1:exon

HIV01_RS01715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01715
old locus tag: HIV01_001715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016902240.1
GO function: GO:0051920 - peroxiredoxin activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carboxymuconolactone decarboxylase family protein
translation: MSGSGNETEGDRVAEFTAFRKRMNERILAEPNQVVRRFFALDTQTYQAGALDVKTKELLGLVASMVLRCDDCISYHVAQCKEAGVNREEMFEAFSVGLVVGGSIVIPHMRRAVDFLDRLEQGEASAPEGHDHG
SIO_010081: HIV01_RS01715
subclass of: SO_0000673
so part of: HIV01_RS01715
location: 336086..336487
location: region:336086-336487:1
so has part: feature:336086-336487:1:exon

WP_200604559.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:336086-336487:1:exon

HIV01_RS01720
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01720
old locus tag: HIV01_001720
so part of: sequence
location: 336703..337710
location: region:336703-337710:1
so has part: feature:336703-337710:1:exon
subclass of: SO_0000010

position:336703:1
position: 336703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:337710:1
position: 337710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:336703-337710:1:exon

HIV01_RS01720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01720
old locus tag: HIV01_001720
EC number: 1.1.1.41
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020852046.1
GO function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: isocitrate dehydrogenase
translation: MTQTITVIRGDGIGPEIMDATLHVLDTMDVGLQYEFADAGLVALEKHGELLPQATMDSIRKNRIALKSPLTTPVGEGFSSINVELRKRFDLYANVRPAKSFPNTKSRFPTGVDLITVRENTEGAYIGEGQTLSEDGEVAMLTQKVTRRGSERIVRYAFELARKTGRKKVTVVHKANILKSTSGLFLKTARAVATEYPDIECNEMIVDNTCMQLVMRPEQFDIIVTTNLFGDIISDLCAGLVGGLGLAPGANIGTDAAIFEAVHGTAPDIAGQGKANPCALLLGAAQMLDHIGQPEKASRLRAAIIATLEAKDSLTPDLGGSGNTMSFAKAIAGRI
SIO_010081: HIV01_RS01720
subclass of: SO_0000673
so part of: HIV01_RS01720
location: 336703..337710
location: region:336703-337710:1
so has part: feature:336703-337710:1:exon

WP_200604560.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:336703-337710:1:exon

HIV01_RS01725
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01725
old locus tag: HIV01_001725
so part of: sequence
location: 337905..339239
location: region:337905-339239:1
so has part: feature:337905-339239:1:exon
subclass of: SO_0000010

position:337905:1
position: 337905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:339239:1
position: 339239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:337905-339239:1:exon

HIV01_RS01725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01725
old locus tag: HIV01_001725
inference: COORDINATES: protein motif:HMM:NF015515.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Na+/H+ antiporter NhaC family protein
translation: MNESVRPSAWALAPLLLFLALFFGAGLYYTTHGEAMGFYQLRAPVAILPALALSAFIAWRRGLKPLETLLSGMGDHNVVLMCLIFLLAGGFVEVSKAIGAVDAIVALGIGHVHPALLLPGLFVVAGFISLSLGTSMGTIAAVAPIALGVSDASGLDRALVLGAVIGGATFGDNLSVISDTAIVASRTQGCSMRDKFRENLKLALPAAVLTVIVLGLVADTAPVQPLDPVSPWLIVPYLIVLGLALAGVDVIIVLSLGLVIAGVFGAIFSDEFGVASYATHIWEGFESMIEITLLSLLVGGLGALMKATGGLTWLAQVIGRFARGHRSRRAGEISIATLSATTDVFTANNTVAILISGGLARDIAQQHGVPPARAASVLDIFACVTQGVLPYGAQILLAASLGAVSPLALAGSVHYSWLLGAITVIAMLWPRREKAAVQLSPDGG
SIO_010081: HIV01_RS01725
subclass of: SO_0000673
so part of: HIV01_RS01725
location: 337905..339239
location: region:337905-339239:1
so has part: feature:337905-339239:1:exon

WP_200604561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:337905-339239:1:exon

HIV01_RS01730
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01730
old locus tag: HIV01_001730
so part of: sequence
location: complement(339295..340053)
location: region:339295-340053:-1
so has part: feature:339295-340053:-1:exon
subclass of: SO_0000010

position:339295:-1
position: 339295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:340053:-1
position: 340053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:339295-340053:-1:exon

HIV01_RS01730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01730
old locus tag: HIV01_001730
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005927840.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bax inhibitor-1/YccA family protein
translation: MRSGNPALKDTTFLDLGSGTVVRRDGDAMTLVGTVNKTGLLLLLCVITATFAWSQISFTAAGPVGAGPYLWGGAIGGLVLALVTAFKKEWSPVTAPLYALVEGFFLGAISAMYNHRFEGIVLQAVMLTIGTLFALLFAYRSGLIRATENFKLGVVAATGGIALLYLVTMGLGMFGINVPYIHESGLIGIGFSLFVVVIAAMNLVLDFDFIETGVEQNAPKYMEWYGAFGLMVTLVWLYVEFLRLLSKLQSRD
SIO_010081: HIV01_RS01730
subclass of: SO_0000673
so part of: HIV01_RS01730
location: complement(339295..340053)
location: region:339295-340053:-1
so has part: feature:339295-340053:-1:exon

WP_200604562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:339295-340053:-1:exon

HIV01_RS01735
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01735
old locus tag: HIV01_001735
so part of: sequence
location: 340211..340287
location: region:340211-340287:1
so has part: feature:340211-340287:1:exon
subclass of: SO_0000663

position:340211:1
position: 340211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340287:1
position: 340287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:340211-340287:1:exon

HIV01_RS01735
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS01735
old locus tag: HIV01_001735
product: tRNA-Pro
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:340245..340247,aa:Pro,seq:tgg)
SIO_010081: HIV01_RS01735
subclass of: SO_0000673
so part of: HIV01_RS01735
location: 340211..340287
location: region:340211-340287:1
so has part: feature:340211-340287:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:340211-340287:1:exon

HIV01_RS01740
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01740
old locus tag: HIV01_001740
so part of: sequence
location: 340355..340431
location: region:340355-340431:1
so has part: feature:340355-340431:1:exon
subclass of: SO_0000663

position:340355:1
position: 340355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340431:1
position: 340431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:340355-340431:1:exon

HIV01_RS01740
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS01740
old locus tag: HIV01_001740
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:340389..340391,aa:Arg,seq:tct)
SIO_010081: HIV01_RS01740
subclass of: SO_0000673
so part of: HIV01_RS01740
location: 340355..340431
location: region:340355-340431:1
so has part: feature:340355-340431:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:340355-340431:1:exon

HIV01_RS01745
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01745
old locus tag: HIV01_001745
so part of: sequence
location: 340496..340572
location: region:340496-340572:1
so has part: feature:340496-340572:1:exon
subclass of: SO_0000663

position:340496:1
position: 340496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340572:1
position: 340572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:340496-340572:1:exon

HIV01_RS01745
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS01745
old locus tag: HIV01_001745
product: tRNA-His
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:340530..340532,aa:His,seq:gtg)
SIO_010081: HIV01_RS01745
subclass of: SO_0000673
so part of: HIV01_RS01745
location: 340496..340572
location: region:340496-340572:1
so has part: feature:340496-340572:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:340496-340572:1:exon

HIV01_RS01750
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01750
old locus tag: HIV01_001750
so part of: sequence
location: 340638..340713
location: region:340638-340713:1
so has part: feature:340638-340713:1:exon
subclass of: SO_0000663

position:340638:1
position: 340638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340713:1
position: 340713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:340638-340713:1:exon

HIV01_RS01750
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS01750
old locus tag: HIV01_001750
product: tRNA-Lys
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:340671..340673,aa:Lys,seq:ctt)
SIO_010081: HIV01_RS01750
subclass of: SO_0000673
so part of: HIV01_RS01750
location: 340638..340713
location: region:340638-340713:1
so has part: feature:340638-340713:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:340638-340713:1:exon

HIV01_RS01755
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01755
old locus tag: HIV01_001755
so part of: sequence
location: 340810..340894
location: region:340810-340894:1
so has part: feature:340810-340894:1:exon
subclass of: SO_0000663

position:340810:1
position: 340810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340894:1
position: 340894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:340810-340894:1:exon

HIV01_RS01755
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS01755
old locus tag: HIV01_001755
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:340844..340846,aa:Leu,seq:tag)
SIO_010081: HIV01_RS01755
subclass of: SO_0000673
so part of: HIV01_RS01755
location: 340810..340894
location: region:340810-340894:1
so has part: feature:340810-340894:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:340810-340894:1:exon

HIV01_RS01760
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: tig
locus tag: HIV01_RS01760
old locus tag: HIV01_001760
so part of: sequence
location: 341162..342457
location: region:341162-342457:1
so has part: feature:341162-342457:1:exon
subclass of: SO_0000010

position:341162:1
position: 341162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:342457:1
position: 342457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:341162-342457:1:exon

HIV01_RS01760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: tig
locus tag: HIV01_RS01760
old locus tag: HIV01_001760
EC number: 5.2.1.8
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019659529.1
GO component: GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO process: GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: trigger factor
translation: MQVSVESLGNLERRMTFSLPADRLEAVVGGRLREISRGAKIKGFRPGKVPAKVIEQRFGAQVRAEVLDGLLREGFSNAVREQSLQIAGNPQIVPASDAELAYVATFEVVPDFGDIDVAKLNVIRHTAEVSDADIDAMIENLRMQRRSWNAVEREAATGDAVEIETWSQVGDDRLPAEGVERGATIIGSASMLPAIESALVGLKAGDEKVAEIEFPADWRVPQFAGRTAQVNLKATKVSEPVLPDVDFAFIKSFGVRSGDAEQFRADIRSNLERELKGALMTRLRREVGEQLIAGYSHVEMPPKLVEGEARDMARQTIEQARRQGRAIGEIPADAHMGFMDAARKRVLVGLIVGEIARRNELRLEPKRVTETLQLIASTYEEPQQVIELYRNDAQLMSGLQARVMEEQVIDWIAERAQHTEQPLSFNEAIRQ
SIO_010081: HIV01_RS01760
subclass of: SO_0000673
so part of: HIV01_RS01760
location: 341162..342457
location: region:341162-342457:1
so has part: feature:341162-342457:1:exon

WP_200604563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:341162-342457:1:exon

HIV01_RS01765
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: clpP
locus tag: HIV01_RS01765
old locus tag: HIV01_001765
so part of: sequence
location: 342623..343249
location: region:342623-343249:1
so has part: feature:342623-343249:1:exon
subclass of: SO_0000010

position:342623:1
position: 342623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:343249:1
position: 343249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:342623-343249:1:exon

HIV01_RS01765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: clpP
locus tag: HIV01_RS01765
old locus tag: HIV01_001765
EC number: 3.4.21.92
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002806026.1
GO component: GO:0009368 - endopeptidase Clp complex [Evidence IEA]
GO function: GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-dependent Clp endopeptidase proteolytic subunit ClpP
translation: MDNLTRALNLVPMVVEQTSRGERAYDIYSRLLKERVIFLVGGVDDHVANVIVAQMLFLEAENPEKDISLYINSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGALLLAAGAKGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTLRQRLNEILAKHTGQALETIARDTERDNFKSAEAAREYGLVDQVLERRPEDSIQTS
SIO_010081: HIV01_RS01765
subclass of: SO_0000673
so part of: HIV01_RS01765
location: 342623..343249
location: region:342623-343249:1
so has part: feature:342623-343249:1:exon

WP_200604564.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:342623-343249:1:exon

HIV01_RS01770
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: clpX
locus tag: HIV01_RS01770
old locus tag: HIV01_001770
so part of: sequence
location: 343436..344725
location: region:343436-344725:1
so has part: feature:343436-344725:1:exon
subclass of: SO_0000010

position:343436:1
position: 343436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:344725:1
position: 344725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343436-344725:1:exon

HIV01_RS01770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: clpX
locus tag: HIV01_RS01770
old locus tag: HIV01_001770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006451747.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-dependent Clp protease ATP-binding subunit ClpX
translation: MSDDRQGRSTGDSNKILYCSFCGKSQHEVRKLIAGPSVFICDECVELCNDIIREELEEKAQSARSHLPKPREILEVLDQYVIGQTRAKRTLAVAVYNHYKRIESRQKNDDVELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFVVGGAFAGLDKIIQQRSTEAGGIGFGAKVKSSERKSDIGKLLADVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALVKILTEPKNAITKQFKKLFDMEGVELEFRPDALAAIARKALKRKTGARGLRTIVESVLLDTMYELPSLENVSKVVVDESVIDHKTEPYLIYQTPPAAPKVASAD
SIO_010081: HIV01_RS01770
subclass of: SO_0000673
so part of: HIV01_RS01770
location: 343436..344725
location: region:343436-344725:1
so has part: feature:343436-344725:1:exon

WP_158734065.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:343436-344725:1:exon

HIV01_RS01775
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: lon
locus tag: HIV01_RS01775
old locus tag: HIV01_001775
pseudo: true
so part of: sequence
location: 344971..>347325
location: region:344971-347325:1
so has part: feature:344971-347325:1:exon
subclass of: SO_0000010

position:344971:1
position: 344971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:347325:1
position: 347325
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344971-347325:1:exon

HIV01_RS01775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: lon
locus tag: HIV01_RS01775
old locus tag: HIV01_001775
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006451748.1
GO function: GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: endopeptidase La
SIO_010081: HIV01_RS01775
subclass of: SO_0000673
so part of: HIV01_RS01775
location: 344971..>347325
location: region:344971-347325:1
so has part: feature:344971-347325:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:344971-347325:1:exon

HIV01_RS01780
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01780
old locus tag: HIV01_001780
so part of: sequence
location: 347611..347883
location: region:347611-347883:1
so has part: feature:347611-347883:1:exon
subclass of: SO_0000010

position:347611:1
position: 347611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:347883:1
position: 347883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:347611-347883:1:exon

HIV01_RS01780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01780
old locus tag: HIV01_001780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016904732.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0030261 - chromosome condensation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HU family DNA-binding protein
translation: MNKAEFVGAVAEAAELSKTDAANAVDAVISVVTKALKKGDTVTLVGFGTFQVRKRAARQGRNPKTGETIKIKASKNPSFKAGKALKDAVN
SIO_010081: HIV01_RS01780
subclass of: SO_0000673
so part of: HIV01_RS01780
location: 347611..347883
location: region:347611-347883:1
so has part: feature:347611-347883:1:exon

WP_158734067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:347611-347883:1:exon

HIV01_RS01785
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01785
old locus tag: HIV01_001785
so part of: sequence
location: 347897..347971
location: region:347897-347971:1
so has part: feature:347897-347971:1:exon
subclass of: SO_0000663

position:347897:1
position: 347897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:347971:1
position: 347971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:347897-347971:1:exon

HIV01_RS01785
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS01785
old locus tag: HIV01_001785
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:347929..347931,aa:Val,seq:tac)
SIO_010081: HIV01_RS01785
subclass of: SO_0000673
so part of: HIV01_RS01785
location: 347897..347971
location: region:347897-347971:1
so has part: feature:347897-347971:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:347897-347971:1:exon

HIV01_RS01790
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01790
old locus tag: HIV01_001790
so part of: sequence
location: 348006..348082
location: region:348006-348082:1
so has part: feature:348006-348082:1:exon
subclass of: SO_0000663

position:348006:1
position: 348006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:348082:1
position: 348082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:348006-348082:1:exon

HIV01_RS01790
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS01790
old locus tag: HIV01_001790
product: tRNA-Asp
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:348040..348042,aa:Asp,seq:gtc)
SIO_010081: HIV01_RS01790
subclass of: SO_0000673
so part of: HIV01_RS01790
location: 348006..348082
location: region:348006-348082:1
so has part: feature:348006-348082:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:348006-348082:1:exon

HIV01_RS01795
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01795
old locus tag: HIV01_001795
so part of: sequence
location: 348195..348271
location: region:348195-348271:1
so has part: feature:348195-348271:1:exon
subclass of: SO_0000663

position:348195:1
position: 348195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:348271:1
position: 348271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:348195-348271:1:exon

HIV01_RS01795
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS01795
old locus tag: HIV01_001795
product: tRNA-Asp
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:348229..348231,aa:Asp,seq:gtc)
SIO_010081: HIV01_RS01795
subclass of: SO_0000673
so part of: HIV01_RS01795
location: 348195..348271
location: region:348195-348271:1
so has part: feature:348195-348271:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:348195-348271:1:exon

HIV01_RS01800
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01800
old locus tag: HIV01_001800
so part of: sequence
location: 348507..350486
location: region:348507-350486:1
so has part: feature:348507-350486:1:exon
subclass of: SO_0000010

position:348507:1
position: 348507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:350486:1
position: 350486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:348507-350486:1:exon

HIV01_RS01800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01800
old locus tag: HIV01_001800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005920425.1
GO function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptidyl-prolyl cis-trans isomerase
translation: MLQKLRDKTSGWIATVILGLLIIPFAFVGIEQYLGQRTDNSVAKIDVPPTWWPSAPSFWPVSVFWQHDSIGIDEFRRTFEQARQQQRAQQGEAFDARAFESVDNKRAILDGLIDARVQQLSAQQDGMVVSDAMVRKSIQEVPGFQVDGKFDYTRYKLALASQVPALNERQFEQQVREGLQQSMMSMGVAASNFVTTAEMDRLLQLMGEQRDASVLPLPAPVADTGAVTAAEIQKWYDGHAAQYRAPEAVAIEYVEINSATLPAPAPADDATLRQRYEQEKNRFIEAEQRLASHILVRVPEGADAAAQKAAEQKATQLAAQAKAPGADFAALARANSDDTGSQAVGGDLGWVSKGMMVGPFENALFAMKPGEISAPVKSEFGWHVIQLRELKSGAQESFEQVREALAREQAEADRERVASEFSSRLVDLTLKNPSSLAPAAREMNIPLQKAGPFSRTNAQGIVANPAVIRAAFSDNLIQDGTISDPIELAPGHSVLIRVTAHTPERALPLAQVRDQVIAAVRADRSAQAARKDADALVARLKGGETLDAIAASRQLPPPQVLPGIPRGAPVPEASVADAIFAVAAPDAGKVSPGQAQLSDGRIVLFAVSKVTPGDVASMPAQQREMLQQQIARIGGSDDVRALVSQLRKRVKVTVVERNL
SIO_010081: HIV01_RS01800
subclass of: SO_0000673
so part of: HIV01_RS01800
location: 348507..350486
location: region:348507-350486:1
so has part: feature:348507-350486:1:exon

WP_200604566.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:348507-350486:1:exon

HIV01_RS01805
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01805
old locus tag: HIV01_001805
so part of: sequence
location: complement(350562..351356)
location: region:350562-351356:-1
so has part: feature:350562-351356:-1:exon
subclass of: SO_0000010

position:350562:-1
position: 350562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:351356:-1
position: 351356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:350562-351356:-1:exon

HIV01_RS01805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01805
old locus tag: HIV01_001805
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018974669.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: enoyl-ACP reductase
translation: MGFLQGKRALITGIASERSIASGIAEAMHREGAQLAFTYQNEKLKSRVESAAAEYGSNIVLPLDVSDDAQIAACFEQLGQQWSDGFDILVHAIAFAPREAIAGQFLDGLTRENFAIAHDVSSYSLSALSKAARPLMKGRNGSILTLSYLGAERALVGYNLMGVAKASLEASVRYLACNLGPEGTRVNAISAGPIKTLAAAGIAGFRKILGHVEENAPLRRTVTIEDVGNVAAFLCSDLASGVTGEVTYVDAGYNILGMTGIGNE
SIO_010081: HIV01_RS01805
subclass of: SO_0000673
so part of: HIV01_RS01805
location: complement(350562..351356)
location: region:350562-351356:-1
so has part: feature:350562-351356:-1:exon

WP_200604567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:350562-351356:-1:exon

HIV01_RS01810
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01810
old locus tag: HIV01_001810
so part of: sequence
location: complement(351503..352597)
location: region:351503-352597:-1
so has part: feature:351503-352597:-1:exon
subclass of: SO_0000010

position:351503:-1
position: 351503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:352597:-1
position: 352597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:351503-352597:-1:exon

HIV01_RS01810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01810
old locus tag: HIV01_001810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019302620.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MAQDSANQAQTAATPAEATTRNGREIYESFREGLAEPECEPGGVSPRWRQHFATAPKRLAVDDDLLPLFGYVVDALRQAHLPTEFALIPFVESGYRPGARSPAGPAGLWQMIAITARNHEVPMRSGYDGRLSPVDSTTAAVRYLKTLHGMFAGDWRLTVMAYNAGEYRVMGALKRSGQVARSAKPEQLVGLSDITQAYVRKLHALSCLMEQADDREEWLRQLDRPVPRLQAVTLPAEIKRLDQWAARTGEDSGQLVRLNPVYADGIGTRPARLLAISAPATPVDAVASAEPAAASTAPAAASRKHTVKRGESASTIARRYDVRVADLMQRNGLGARAVLKPGQLLVIDAHDAPGNRVPSEAGSP
SIO_010081: HIV01_RS01810
subclass of: SO_0000673
so part of: HIV01_RS01810
location: complement(351503..352597)
location: region:351503-352597:-1
so has part: feature:351503-352597:-1:exon

WP_207527159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:351503-352597:-1:exon

HIV01_RS01815
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: gloB
locus tag: HIV01_RS01815
old locus tag: HIV01_001815
so part of: sequence
location: complement(352666..353433)
location: region:352666-353433:-1
so has part: feature:352666-353433:-1:exon
subclass of: SO_0000010

position:352666:-1
position: 352666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:353433:-1
position: 353433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:352666-353433:-1:exon

HIV01_RS01815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: gloB
locus tag: HIV01_RS01815
old locus tag: HIV01_001815
EC number: 3.1.2.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016902543.1
GO function: GO:0004416 - hydroxyacylglutathione hydrolase activity [Evidence IEA]
GO process: GO:0019243 - methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydroxyacylglutathione hydrolase
translation: MRLQALPALSDNYIWICADDDGSRALIVDPSEAAPVLAAADAGLQPAGILLTHHHHDHIGGVPALLERWRGLPVMAPVDDRIATATRRVGDGDRFELAGWEFEVMALPGHTLSHVAYVGHDLLFCGDTLFSLGCGRLFEGTPAQMHHSLSRLAALPGQTRLCCGHEYTLSNAAFARVVEPGNPALTRRTEDAQTMRQTGQPTLPSTIASELAANPFLRVDSAEVRAALLHQTGQAPGDSVEAFAALRRWKDGFVA
SIO_010081: HIV01_RS01815
subclass of: SO_0000673
so part of: HIV01_RS01815
location: complement(352666..353433)
location: region:352666-353433:-1
so has part: feature:352666-353433:-1:exon

WP_207527052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:352666-353433:-1:exon

HIV01_RS01820
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01820
old locus tag: HIV01_001820
so part of: sequence
location: 353537..354202
location: region:353537-354202:1
so has part: feature:353537-354202:1:exon
subclass of: SO_0000010

position:353537:1
position: 353537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:354202:1
position: 354202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:353537-354202:1:exon

HIV01_RS01820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01820
old locus tag: HIV01_001820
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPLPSHPRQPDAAHVPLAWFSSEAGQGLLAVQEAAMARVLASRPPATPWAWFGVRGATAPEIAEGRGLALRRNGAGFDGGVRCRLPLPFASEAFGAILLQHALDDGFAIDLILDECARMLMPGGTLWLAALNPWSPYRARWARTGLHARDPGGWQSALRRTGFAVDTVSLQWLGPHWRVAHGEVGVGAADRLRAGIALTVNKRVHALIPPTPLRNLRWSEV
SIO_010081: HIV01_RS01820
subclass of: SO_0000673
so part of: HIV01_RS01820
location: 353537..354202
location: region:353537-354202:1
so has part: feature:353537-354202:1:exon

WP_200604569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:353537-354202:1:exon

HIV01_RS01825
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rnhA
locus tag: HIV01_RS01825
old locus tag: HIV01_001825
so part of: sequence
location: 354273..354758
location: region:354273-354758:1
so has part: feature:354273-354758:1:exon
subclass of: SO_0000010

position:354273:1
position: 354273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:354758:1
position: 354758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:354273-354758:1:exon

HIV01_RS01825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rnhA
locus tag: HIV01_RS01825
old locus tag: HIV01_001825
EC number: 3.1.26.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017907823.1
GO function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribonuclease HI
translation: MNSDASTTDTRKQVEIHTDGACLGNPGPGGWAALLRFRGREREVAGGEADTTNNRMELMAAIMALETLSEPCEVVLHTDSQYVRQGITEWIGNWVRRGWKTAGGDPVKNRDLWERLHAAAQRHSIQWKWVKGHSGDPDNERVDVLARLQAQRLRGSSAVAR
SIO_010081: HIV01_RS01825
subclass of: SO_0000673
so part of: HIV01_RS01825
location: 354273..354758
location: region:354273-354758:1
so has part: feature:354273-354758:1:exon

WP_200604570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:354273-354758:1:exon

HIV01_RS01830
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: dnaQ
locus tag: HIV01_RS01830
old locus tag: HIV01_001830
so part of: sequence
location: 354844..355581
location: region:354844-355581:1
so has part: feature:354844-355581:1:exon
subclass of: SO_0000010

position:354844:1
position: 354844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:355581:1
position: 355581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:354844-355581:1:exon

HIV01_RS01830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: dnaQ
locus tag: HIV01_RS01830
old locus tag: HIV01_001830
EC number: 2.7.7.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013535699.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA polymerase III subunit epsilon
translation: MRQIILDTETTGLSWERGNRVVEIGCVEYIERRPSGRTFHVYLKPDCDFEQGAQEVTGLTLDFLADKPVFADVVEEFIAFIDGAELIIHNAAFDVGFLDNELRLVDSQYGGLRERCNVEDTLLMARQRFPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILAEVYLALTSGQEEIGFASDAAGTQVEVVSFRTDPAAARPRVQVAADELAAHEARLEKLRKKAGKCVWDQFIVVAEAEAELEPA
SIO_010081: HIV01_RS01830
subclass of: SO_0000673
so part of: HIV01_RS01830
location: 354844..355581
location: region:354844-355581:1
so has part: feature:354844-355581:1:exon

WP_200604571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:354844-355581:1:exon

HIV01_RS01835
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01835
old locus tag: HIV01_001835
so part of: sequence
location: complement(355639..356343)
location: region:355639-356343:-1
so has part: feature:355639-356343:-1:exon
subclass of: SO_0000010

position:355639:-1
position: 355639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:356343:-1
position: 356343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:355639-356343:-1:exon

HIV01_RS01835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01835
old locus tag: HIV01_001835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003483822.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein phosphatase 2C domain-containing protein
translation: MIEFGHLTHVGLRRELNEDTYYGDGELGLWLVADGMGGHEYGEVASALARETIVREIRDGTPLAQAIRIADEEIIRTSKRRNDALPMGTTVVAARIAGSRFEVAWVGDSRVYLWREGHLAQLSQDHSYVQELIATGAITHEQARSHPHRNVVTQALGVTDPRNLNVETMTGELKPGMQLLLCSDGLTEEVDDRGIARVLAQDDCSAQECVDSLVAAALDGGGSDNVTVILVRHH
SIO_010081: HIV01_RS01835
subclass of: SO_0000673
so part of: HIV01_RS01835
location: complement(355639..356343)
location: region:355639-356343:-1
so has part: feature:355639-356343:-1:exon

WP_158733659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:355639-356343:-1:exon

HIV01_RS01840
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01840
old locus tag: HIV01_001840
so part of: sequence
location: complement(356526..356616)
location: region:356526-356616:-1
so has part: feature:356526-356616:-1:exon
subclass of: SO_0000663

position:356526:-1
position: 356526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:356616:-1
position: 356616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356526-356616:-1:exon

HIV01_RS01840
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS01840
old locus tag: HIV01_001840
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(356580..356582),aa:Ser,seq:cga)
SIO_010081: HIV01_RS01840
subclass of: SO_0000673
so part of: HIV01_RS01840
location: complement(356526..356616)
location: region:356526-356616:-1
so has part: feature:356526-356616:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:356526-356616:-1:exon

HIV01_RS01845
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01845
old locus tag: HIV01_001845
so part of: sequence
location: 356729..357136
location: region:356729-357136:1
so has part: feature:356729-357136:1:exon
subclass of: SO_0000010

position:356729:1
position: 356729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:357136:1
position: 357136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356729-357136:1:exon

HIV01_RS01845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01845
old locus tag: HIV01_001845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013535693.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6165 family protein
translation: MSEILVPVSFGELLDKIAILQIKSERMSDPAKLANVRNELSALEKTWMAHPAAGNDIARLRAELKAVNERLWVIEDDIRIKEKAQAFDDEFVRLARSVYFENDERARIKKDINLALGSSYVEEKSYEDYKTGAAP
SIO_010081: HIV01_RS01845
subclass of: SO_0000673
so part of: HIV01_RS01845
location: 356729..357136
location: region:356729-357136:1
so has part: feature:356729-357136:1:exon

WP_200604572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:356729-357136:1:exon

HIV01_RS01850
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01850
old locus tag: HIV01_001850
so part of: sequence
location: complement(357169..357519)
location: region:357169-357519:-1
so has part: feature:357169-357519:-1:exon
subclass of: SO_0000010

position:357169:-1
position: 357169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:357519:-1
position: 357519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:357169-357519:-1:exon

HIV01_RS01850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01850
old locus tag: HIV01_001850
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAAWFTVVAPLLPELIRAARPMFTRGKEPTQIPQQIRELQDAVDQNHQAIKTLAAEMEMTLTALKQASLELERTIVELRQRQALQDQRLMRVQIAAAVAATVAALSFAVAAYALAT
SIO_010081: HIV01_RS01850
subclass of: SO_0000673
so part of: HIV01_RS01850
location: complement(357169..357519)
location: region:357169-357519:-1
so has part: feature:357169-357519:-1:exon

WP_200604573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:357169-357519:-1:exon

HIV01_RS01855
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01855
old locus tag: HIV01_001855
so part of: sequence
location: complement(357519..358616)
location: region:357519-358616:-1
so has part: feature:357519-358616:-1:exon
subclass of: SO_0000010

position:358616:-1
position: 358616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:357519-358616:-1:exon

HIV01_RS01855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01855
old locus tag: HIV01_001855
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002814370.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 9 protein
translation: MKVAAPASICLLRLSALGDVTHVVALVRTLQAAWPQVRLTWIIGKGEHRLLAGLPGVDFVEYDKKTGLAGMRALHRELRQRLGAQRRFDVLLQMQVAARANLLSAFIPAKRRIGYDRSRSKDLHGLFVNERIPDRPGIHVLDAIGSFCEPLGLHQDRVRWDLPVPDEARQWAREQWPQDGKPTMLVSPCSSHALRNWRPERHAALADHAVARGWRVVLCGGRSELERQTSDAILAAMQQPALDLVGKDTLKQLPALLERGQLLVTPDSGPMHIANAMGTKVLGLHAASNPARSGPYSDRSYCADRYDDAARKYLGKPAAELRWGTKIEHDGVMDLVTVDDAIAAFERYCADHLPPHAANASTETS
SIO_010081: HIV01_RS01855
subclass of: SO_0000673
so part of: HIV01_RS01855
location: complement(357519..358616)
location: region:357519-358616:-1
so has part: feature:357519-358616:-1:exon

WP_200604574.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:357519-358616:-1:exon

HIV01_RS01860
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01860
old locus tag: HIV01_001860
so part of: sequence
location: 358776..359525
location: region:358776-359525:1
so has part: feature:358776-359525:1:exon
subclass of: SO_0000010

position:358776:1
position: 358776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:359525:1
position: 359525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:358776-359525:1:exon

HIV01_RS01860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01860
old locus tag: HIV01_001860
EC number: 2.7.1.166
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019305198.1
GO function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-deoxy-D-manno-octulosonic acid kinase
translation: MTGFDATEELTPFRDDSGFGAILFDRNRVRQASPEWFVPSFWEQRARPVESGGRGGAWFIDAPFGPALLRRYLRGGMAARVSRDRYWWQGAGSTRSFAEFRLTRTMAEKGVPVPRPIAACYRRDGMFYRAAILLERLDDVRSLADRAAVAGDGAPWEEAGRLIARAHRAGLDHADLNAHNLLFTTTGRGWIIDLDRGRMRIPATGWRERNLARLKRSLLKLRGNRSAEEVERDFGRLREAYDRAWDRGY
SIO_010081: HIV01_RS01860
subclass of: SO_0000673
so part of: HIV01_RS01860
location: 358776..359525
location: region:358776-359525:1
so has part: feature:358776-359525:1:exon

WP_200604575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:358776-359525:1:exon

HIV01_RS01865
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01865
old locus tag: HIV01_001865
so part of: sequence
location: 359528..360298
location: region:359528-360298:1
so has part: feature:359528-360298:1:exon
subclass of: SO_0000010

position:359528:1
position: 359528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:360298:1
position: 360298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:359528-360298:1:exon

HIV01_RS01865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01865
old locus tag: HIV01_001865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003468578.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MBL fold metallo-hydrolase
translation: MALANTSWQLRLHGVGNASAVELGSAMATIERNGVPWLTIDCGGEGLTAYQAYYGDAPQALYITHTHLDHVAGFERLFVSSYFDPDRRGRIRLYVPATVLPLLHQRVGDYPNALAEGGVNFWDAFQVIPVGGSFWHDGVRLEVFPTRHHWPETAYGLRLHGSVVWTGDTRPIPEMLARYADAGELIAHDCALQGNPSHSGIEDLEREYPPALLDRCLLYHYGNREEGEVLAARGYRVAHPGQVVALAEPTAMQVEA
SIO_010081: HIV01_RS01865
subclass of: SO_0000673
so part of: HIV01_RS01865
location: 359528..360298
location: region:359528-360298:1
so has part: feature:359528-360298:1:exon

WP_200604576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:359528-360298:1:exon

HIV01_RS01870
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: moaA
locus tag: HIV01_RS01870
old locus tag: HIV01_001870
so part of: sequence
location: 360298..361320
location: region:360298-361320:1
so has part: feature:360298-361320:1:exon
subclass of: SO_0000010

position:361320:1
position: 361320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360298-361320:1:exon

HIV01_RS01870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: moaA
locus tag: HIV01_RS01870
old locus tag: HIV01_001870
EC number: 4.1.99.22
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010341141.1
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO process: GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GTP 3',8-cyclase MoaA
translation: MSAVPATSPLPLDLRARPLHDLRLSVIEACNFRCPYCMPADRVPDDYGFDSASRLSFDEIETLVRGCVALGVNKLRLTGGEPLLRKRLPQLVERLAAINGLQDIALTTNGSLLAAQARALRDAGLGRITVSLDAIDPQRFSQMSGGRGDIADVLAGIEAAQAAGFASIKLNCVVERGINDDQVLPLLERFRGSGHVLRFIEYMDVGTCNGWVRDRVVPSAELRDRIAARWPLRALEANYRGEVASRYAFADGQGEVGFVSSVSEPFCGDCHRARVSADGKLYTCLFAGDGHDLRPALAQGESALRDRVAELWSNRGDRYSELRGASGTSRRHVEMYLIGG
SIO_010081: HIV01_RS01870
subclass of: SO_0000673
so part of: HIV01_RS01870
location: 360298..361320
location: region:360298-361320:1
so has part: feature:360298-361320:1:exon

WP_200604577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:360298-361320:1:exon

HIV01_RS01875
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: moaC
locus tag: HIV01_RS01875
old locus tag: HIV01_001875
so part of: sequence
location: 361321..361821
location: region:361321-361821:1
so has part: feature:361321-361821:1:exon
subclass of: SO_0000010

position:361321:1
position: 361321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:361821:1
position: 361821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:361321-361821:1:exon

HIV01_RS01875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: moaC
locus tag: HIV01_RS01875
old locus tag: HIV01_001875
EC number: 4.6.1.17
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017159642.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]
GO process: GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cyclic pyranopterin monophosphate synthase MoaC
translation: MKASNKSKSRQLTHIDPDGRPAMVDVSAKAVTAREARAECKVRFPAPVATQLRASGLKSAKGGIVDTAIIAGTMAVKRTHELIPFCHPLPIDGCRIAIDWDGATTLRIECAVRTTHRTGVEMEALTGATVAALTVYDMCKALSHAIVLGPARVLGKRGGRHDFGAT
SIO_010081: HIV01_RS01875
subclass of: SO_0000673
so part of: HIV01_RS01875
location: 361321..361821
location: region:361321-361821:1
so has part: feature:361321-361821:1:exon

WP_200604578.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:361321-361821:1:exon

HIV01_RS01880
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: moaD
locus tag: HIV01_RS01880
old locus tag: HIV01_001880
so part of: sequence
location: 361818..362060
location: region:361818-362060:1
so has part: feature:361818-362060:1:exon
subclass of: SO_0000010

position:361818:1
position: 361818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362060:1
position: 362060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:361818-362060:1:exon

HIV01_RS01880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: moaD
locus tag: HIV01_RS01880
old locus tag: HIV01_001880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011257909.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]
GO process: GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: molybdopterin converting factor subunit 1
translation: MMALATVLYFASLRDAAGVASEPVDADGDLSGLYELLRTRHGFALPRERLRVAVDGEFARWDQPVRAGSEIAFIPPVSGG
SIO_010081: HIV01_RS01880
subclass of: SO_0000673
so part of: HIV01_RS01880
location: 361818..362060
location: region:361818-362060:1
so has part: feature:361818-362060:1:exon

WP_200606299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:361818-362060:1:exon

HIV01_RS01885
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01885
old locus tag: HIV01_001885
so part of: sequence
location: 362081..362506
location: region:362081-362506:1
so has part: feature:362081-362506:1:exon
subclass of: SO_0000010

position:362081:1
position: 362081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362506:1
position: 362506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362081-362506:1:exon

HIV01_RS01885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01885
old locus tag: HIV01_001885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017908886.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: molybdenum cofactor biosynthesis protein MoaE
translation: MTKHFSLSDTPFDTASERAKLLDDRVGGFASFEGWVRDHNDGRPVHGLRYEAYAALAEAEGERVLTEALSKFDILDARCVHRVGDLAIGELAVWVGVSAAHRDAAFAACRFVIDEVKSRVPIWKHERYADGDAGWLHPHQT
SIO_010081: HIV01_RS01885
subclass of: SO_0000673
so part of: HIV01_RS01885
location: 362081..362506
location: region:362081-362506:1
so has part: feature:362081-362506:1:exon

WP_200604579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:362081-362506:1:exon

HIV01_RS01890
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01890
old locus tag: HIV01_001890
so part of: sequence
location: 362538..363554
location: region:362538-363554:1
so has part: feature:362538-363554:1:exon
subclass of: SO_0000010

position:362538:1
position: 362538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:363554:1
position: 363554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362538-363554:1:exon

HIV01_RS01890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01890
old locus tag: HIV01_001890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013535684.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YncE family protein
translation: MIRPVVLSLSLALALSPGMIPAAGSTELLVGNKSADTVWRLSTDDGRKLGEFATGQGPHEIVVSSDGRTALVSNYGSQSPGSSLSVLDLAGGGAARSIDLGDNTRPHGMRLMPGNKRAVVTTEGSRKLLVVDIEKAKVDSAIDLGEGRGHMVALSVDGATAYVTKIDAGTVSRVDLKAGRKTHEVAAGAGAEGVAVHPRSGEVWVSNREAGTVTVHDPATLAVRATVPSPGFPIRVVFTADGRHALATNARAATLSVIDVEGKRVIQTVDLSRKGAQYSQTMLGRAALPIGVIADPSGKRVYVAISGGDEIAVVDTARWQVVGQWKTGREPDALGVVP
SIO_010081: HIV01_RS01890
subclass of: SO_0000673
so part of: HIV01_RS01890
location: 362538..363554
location: region:362538-363554:1
so has part: feature:362538-363554:1:exon

WP_200604580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:362538-363554:1:exon

HIV01_RS01895
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: ffs
locus tag: HIV01_RS01895
old locus tag: HIV01_001895
so part of: sequence
location: complement(363593..363689)
location: region:363593-363689:-1
so has part: feature:363593-363689:-1:exon
subclass of: SO_0000642

position:363593:-1
position: 363593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:363689:-1
position: 363689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363593-363689:-1:exon

HIV01_RS01895
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 2795387
nc RNA class: SRP_RNA
gene: ffs
locus tag: HIV01_RS01895
old locus tag: HIV01_001895
product: signal recognition particle sRNA small type
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00169
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: HIV01_RS01895
subclass of: SO_0000673
so part of: HIV01_RS01895
location: complement(363593..363689)
location: region:363593-363689:-1
so has part: feature:363593-363689:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:363593-363689:-1:exon

HIV01_RS01900
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01900
old locus tag: HIV01_001900
so part of: sequence
location: complement(363780..363872)
location: region:363780-363872:-1
so has part: feature:363780-363872:-1:exon
subclass of: SO_0000663

position:363780:-1
position: 363780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:363872:-1
position: 363872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363780-363872:-1:exon

HIV01_RS01900
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS01900
old locus tag: HIV01_001900
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(363836..363838),aa:Ser,seq:gga)
SIO_010081: HIV01_RS01900
subclass of: SO_0000673
so part of: HIV01_RS01900
location: complement(363780..363872)
location: region:363780-363872:-1
so has part: feature:363780-363872:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:363780-363872:-1:exon

HIV01_RS01905
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: dnaX
locus tag: HIV01_RS01905
old locus tag: HIV01_001905
so part of: sequence
location: 364023..365843
location: region:364023-365843:1
so has part: feature:364023-365843:1:exon
subclass of: SO_0000010

position:364023:1
position: 364023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:365843:1
position: 365843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:364023-365843:1:exon

HIV01_RS01905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: dnaX
locus tag: HIV01_RS01905
old locus tag: HIV01_001905
EC number: 2.7.7.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011257911.1
GO component: GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA polymerase III subunit gamma/tau
translation: MSYLVLARKWRPKRFAELVGQEHVVRALTNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNCERGTSAEPCGECGSCRDIDSGRFIDLLEIDAASNTGVDDVREVIDNAQYMPSRGRVKVYLIDEVHMLSKSAFNALLKTLEEPPGHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDEQQINGQMTRILEAEGIAAEAGAIRQLSKAADGSLRDGLSLLDQAIAYTGASAGGSTLGDAGVATMLGTVDRTRVGALLSSLAEGDGERLLAEVAVLAEFSPDWGSVLEAFSDALHRIQVRQLVPEAQVEADGVDVDALAAQLRPEVVQLWYQMALNGRRDLALAPSPRAGFEMSVLRMLAFRPDDGDGARAPSAQPAQAVRGAAPRSAATAAPADAAPRERTPPPNPFAAEQPKPPAAAAPARPAPAPAPAPAPAPAPIEAAIAPAPIAVARPAPVAAPVPTVVSPPAEVAFVHGAGIADADAWHAMVAATSLRGPARMLAEHAGFVSYSEGVLSLSLAPVDDHLRSNALVELMAEALAPALGAAPQVRFVEARSAESLHQRNERSRDERQAAAEATFMSDPDVQRLISQHGAKVVPDSIRPYDEK
SIO_010081: HIV01_RS01905
subclass of: SO_0000673
so part of: HIV01_RS01905
location: 364023..365843
location: region:364023-365843:1
so has part: feature:364023-365843:1:exon

WP_200604581.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:364023-365843:1:exon

HIV01_RS01910
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01910
old locus tag: HIV01_001910
so part of: sequence
location: 365922..366242
location: region:365922-366242:1
so has part: feature:365922-366242:1:exon
subclass of: SO_0000010

position:365922:1
position: 365922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:366242:1
position: 366242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:365922-366242:1:exon

HIV01_RS01910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01910
old locus tag: HIV01_001910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011346622.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0008150 - biological_process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YbaB/EbfC family nucleoid-associated protein
translation: MRGNIAQLMQQAQKMQENVQRAQEELAKLEVTGNAGGGMVSVTITGRMECRKVRIDPSVLSDQEMVEDLIAAAFNDAVNKVNAESQSKMSAATAGMPIPPGMKMPF
SIO_010081: HIV01_RS01910
subclass of: SO_0000673
so part of: HIV01_RS01910
location: 365922..366242
location: region:365922-366242:1
so has part: feature:365922-366242:1:exon

WP_158733669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:365922-366242:1:exon

HIV01_RS01915
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: recR
locus tag: HIV01_RS01915
old locus tag: HIV01_001915
so part of: sequence
location: 366244..366846
location: region:366244-366846:1
so has part: feature:366244-366846:1:exon
subclass of: SO_0000010

position:366244:1
position: 366244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:366846:1
position: 366846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366244-366846:1:exon

HIV01_RS01915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: recR
locus tag: HIV01_RS01915
old locus tag: HIV01_001915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003483843.1
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombination mediator RecR
translation: MSSLLEQLIEAFRVLPGVGQKSAQRMAYHVLERERAGGQRLADALSAAVEHIGHCARCRDFTEGEVCATCASASRDAHQLCAVESPADRLAIEQATGYRGLYFVLQGRLSPLDGIGPRELGLDTLAARLAEGEVQELIIATNPTVEGEATAHYLAQLARQHKVRPSRLAHGVPLGGELEYVDRGTLSHAFGSRSEMTDRD
SIO_010081: HIV01_RS01915
subclass of: SO_0000673
so part of: HIV01_RS01915
location: 366244..366846
location: region:366244-366846:1
so has part: feature:366244-366846:1:exon

WP_200604582.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:366244-366846:1:exon

HIV01_RS01920
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01920
old locus tag: HIV01_001920
so part of: sequence
location: 366905..367255
location: region:366905-367255:1
so has part: feature:366905-367255:1:exon
subclass of: SO_0000010

position:366905:1
position: 366905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:367255:1
position: 367255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366905-367255:1:exon

HIV01_RS01920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01920
old locus tag: HIV01_001920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017155799.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histidine triad nucleotide-binding protein
translation: MSETIFHKIIKHEIPADIVFEDEHLIAFRDIAPQAPVHVLFVPKTDVATLNDLQPDQSAIVGRLAVAAADYAKREGFAEDGYRIVMNCNGHGGQTVFQIHLHLLAGAPLGRFGTSR
SIO_010081: HIV01_RS01920
subclass of: SO_0000673
so part of: HIV01_RS01920
location: 366905..367255
location: region:366905-367255:1
so has part: feature:366905-367255:1:exon

WP_200604583.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:366905-367255:1:exon

HIV01_RS01925
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01925
old locus tag: HIV01_001925
so part of: sequence
location: complement(367275..367763)
location: region:367275-367763:-1
so has part: feature:367275-367763:-1:exon
subclass of: SO_0000010

position:367275:-1
position: 367275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:367763:-1
position: 367763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367275-367763:-1:exon

HIV01_RS01925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01925
old locus tag: HIV01_001925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002814343.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Slp family lipoprotein
translation: MNLRTALLALGTMMLAACVTAPQPLQGEFNPITPRDAAASDVTGAPVRWGGRIVGVEPQPNRTCFEMVSTYLGDNARPYWGSDDTGGRFIACRTGFYDPAIFEKNREVTFIGRVSGYQNRQIGGYDYRFPQVEADVVYLWPVRETVDVVGYPAAPWPWWGWW
SIO_010081: HIV01_RS01925
subclass of: SO_0000673
so part of: HIV01_RS01925
location: complement(367275..367763)
location: region:367275-367763:-1
so has part: feature:367275-367763:-1:exon

WP_200604584.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:367275-367763:-1:exon

HIV01_RS01930
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01930
old locus tag: HIV01_001930
so part of: sequence
location: complement(367789..369771)
location: region:367789-369771:-1
so has part: feature:367789-369771:-1:exon
subclass of: SO_0000010

position:367789:-1
position: 367789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:369771:-1
position: 369771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367789-369771:-1:exon

HIV01_RS01930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01930
old locus tag: HIV01_001930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011036209.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3488 and transglutaminase-like domain-containing protein
translation: MADPATPALDPRTRRWVLLSAGACLLPLLLQLPLLIAVTIAVSAVAVVAMSWRQPLHGLVRLLLSVALIATVLAMSDFSIGRDTGCALLAAMLAIKPSETFSLRDARSLLGFALFAPFATFLLDQGPLSLALGLAATLLALAALQLLADVESGDVRRDASPMQRIAGTARLLALGLPLALAAFWLFPRLGSPLWGIPERAMASTGLSDRMSPGDWIDLMGDDRPALRARFFGPVPAPSQMYWRGPVMWDFDGRTWRQPRWMPGWTETAVEPGPQRWDYEIEMEPTDRRQLVALDLLISAPGGSELDPDHNLQSLTQLTGVSRWRMQSAPPRRYEASLSAETRQYALRLPPNFNPRTLALARQWRLEAGPSADGAIVTRALDWIRRDFAYTLETPLAGRNSVDEFLFDQRAGFCQHFSSSFVVLMRGAGIPARVVTGYAGGYRNSVGGYWLVRRSDAHAWAEVWLRGRGWVRVDPTAAVAPERIYDTLDDRRSVAGGLLDGFAGGRSLIDVGDWLRRGWNDFVLGFDANRQQRLLRPFGIDRLDDRTLVLLLMLAVALGLLWMVWFSRRNEREPDPVLRAWHGLTRRYRHLGLERAPDEPAGRWVERVAAARPELAGELRILSDRFSDWRYADGEPGGRSTRALTQALRAHRPSPRNGNNG
SIO_010081: HIV01_RS01930
subclass of: SO_0000673
so part of: HIV01_RS01930
location: complement(367789..369771)
location: region:367789-369771:-1
so has part: feature:367789-369771:-1:exon

WP_200604585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:367789-369771:-1:exon

HIV01_RS01935
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01935
old locus tag: HIV01_001935
so part of: sequence
location: complement(369764..370693)
location: region:369764-370693:-1
so has part: feature:369764-370693:-1:exon
subclass of: SO_0000010

position:369764:-1
position: 369764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:370693:-1
position: 370693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:369764-370693:-1:exon

HIV01_RS01935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01935
old locus tag: HIV01_001935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003483850.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF58 domain-containing protein
translation: MVWTRPRDPESLPCVLHRRRIYVLPTRFGMFYAVLLFVMLLGSLNYNNNPALLLGLMLAGAGLASLVAAQMQLSGLELVAVDAEPVAAGTPLGVRLYARAAPGRVRRGLRLDDDGSFDAAPGILNLDRGSGESQLLLPTQQRGWFDLPKLRLSTTRPLGLARAWAYVWPESPLLVYPAPEANGPPLPAGHGDRVQARVHPTGDDVHHLRGYRTGDARRAIAWKPSARRDTLLVREFEQPIGAEVVLDWREIAGIGYEARIARLARWIDEAEREGRRYQLRLPGHAALGPDRGPQHRHACLRALALMPHG
SIO_010081: HIV01_RS01935
subclass of: SO_0000673
so part of: HIV01_RS01935
location: complement(369764..370693)
location: region:369764-370693:-1
so has part: feature:369764-370693:-1:exon

WP_245156958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:369764-370693:-1:exon

HIV01_RS01940
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01940
old locus tag: HIV01_001940
so part of: sequence
location: complement(370757..371683)
location: region:370757-371683:-1
so has part: feature:370757-371683:-1:exon
subclass of: SO_0000010

position:370757:-1
position: 370757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:371683:-1
position: 371683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:370757-371683:-1:exon

HIV01_RS01940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01940
old locus tag: HIV01_001940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017118006.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MLTDGLRGSLERAQAQVNSLVLGKPHEVRLAFVALLAGGHLLIEDLPGLGKTTLAHALAATLGLDFQRVQFTSDLLPADVVGVSVFDPQARQFQFHPGPVFAQVLLADEINRAPPRTQSALLEAMAEYQVTVDGTTHALPEPFFVIATQNPVDLSGTYPLPDSQLDRFLLRLSLGYPDADAERHLLAGDDRRDLIARVLPLLGSEDVLAARRSVQQVHASEALVAYVQALMARSRRHPGVRVGLSPRAGLALLRAARAYALLLGRAHVLPEDVQALFPAVAAHRLVAEVDAGKDAALAKAILHAVPVD
SIO_010081: HIV01_RS01940
subclass of: SO_0000673
so part of: HIV01_RS01940
location: complement(370757..371683)
location: region:370757-371683:-1
so has part: feature:370757-371683:-1:exon

WP_200606300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:370757-371683:-1:exon

HIV01_RS01945
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01945
old locus tag: HIV01_001945
so part of: sequence
location: 371874..373718
location: region:371874-373718:1
so has part: feature:371874-373718:1:exon
subclass of: SO_0000010

position:371874:1
position: 371874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:373718:1
position: 373718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:371874-373718:1:exon

HIV01_RS01945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01945
old locus tag: HIV01_001945
EC number: 2.4.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016850008.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 39 protein
translation: MRDEEQARRTFWVLWVTVLAIKLVVAARLPLFVDEAFYWLEGQHLAAAYSDLPGLTAWLTRLGTVVGGNHAFAVRLPFVLIAALVPCLMVRIAAREFGARAGWLAGCFTLLLPLAGTLGVMALPDAAMALATLLCVDAGARLLRQVSPEVALELAVGLALGALCHYRFIAVIGVGFIALAMIEEGRRALRDVRVLVAIAFGASAWAPLVAWNLDNSDAGLRFQLVDRHPWAFHADAVWFIAVQALLVTPLLFAALAVAARRGLTSAAAPERYFALLGAGVVLGFFALGFFADTERVSFHWPLPGYLALLPLLPAVLWRWPRGWQVATAWLAGLGLVANLGYYLAVSQPGLRERNAAEKWYPSNFSGWEPLAQAVRARLATMPAGTRVVADNFKIGAELGFAMGDARIAVLDHPINHKHGRAPQLRLWGLQSAGRTDWGGQPVLLVVGATEIKYRDLLQRYHDLCTMAGPLPPPEVLNIDHGRQRFMLFAMDGSRVHGDCTTPAMAWVDTPVADARVGQRFHVDGWAFKDGVGLAGIEVTLDGQVVAQAQYGRVFQGLRNVWPQSSDPQHPNVGFSAEVILTPGTFSPGRHWLGLRLRGRDGSEETWAERPILVE
SIO_010081: HIV01_RS01945
subclass of: SO_0000673
so part of: HIV01_RS01945
location: 371874..373718
location: region:371874-373718:1
so has part: feature:371874-373718:1:exon

WP_200604587.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:371874-373718:1:exon

HIV01_RS01950
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01950
old locus tag: HIV01_001950
so part of: sequence
location: complement(373750..374328)
location: region:373750-374328:-1
so has part: feature:373750-374328:-1:exon
subclass of: SO_0000010

position:373750:-1
position: 373750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:374328:-1
position: 374328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:373750-374328:-1:exon

HIV01_RS01950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01950
old locus tag: HIV01_001950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011257750.1
GO component: GO:0030428 - cell septum [Evidence IEA]
GO process: GO:0000917 - division septum assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Maf family nucleotide pyrophosphatase
translation: MPALLILASTSVYRRELLSRLRLPFDTARPDSDETPLPGEAPVALARRLAQAKAAAVAALHPDAWVIGSDQVAEFDGRPLGKPGGRQAAIDQLTGMSGRNVQFHTGVCVMKAGHQPLQALDHTVVKFRNLDAAQIERYVDAELPFDCAGSFKSEGLGISLFEAIDNRDPTALIGLPLIATARLLREAGFELP
SIO_010081: HIV01_RS01950
subclass of: SO_0000673
so part of: HIV01_RS01950
location: complement(373750..374328)
location: region:373750-374328:-1
so has part: feature:373750-374328:-1:exon

WP_200604588.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:373750-374328:-1:exon

HIV01_RS01955
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01955
old locus tag: HIV01_001955
so part of: sequence
location: complement(374340..374696)
location: region:374340-374696:-1
so has part: feature:374340-374696:-1:exon
subclass of: SO_0000010

position:374340:-1
position: 374340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:374696:-1
position: 374696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:374340-374696:-1:exon

HIV01_RS01955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01955
old locus tag: HIV01_001955
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTIVLLLLLSSLAIAALFAWVRPGRRERAVREVLDAADALEDRLRLARAEIEAVAGNGGNDPVGDAMREMLRQRLWLRDHGRDASLSQLAEVRSSIDAARDRIDQQLSLIERARSPLA
SIO_010081: HIV01_RS01955
subclass of: SO_0000673
so part of: HIV01_RS01955
location: complement(374340..374696)
location: region:374340-374696:-1
so has part: feature:374340-374696:-1:exon

WP_200604589.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:374340-374696:-1:exon

HIV01_RS01960
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01960
old locus tag: HIV01_001960
so part of: sequence
location: 374847..375365
location: region:374847-375365:1
so has part: feature:374847-375365:1:exon
subclass of: SO_0000010

position:374847:1
position: 374847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:375365:1
position: 375365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:374847-375365:1:exon

HIV01_RS01960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01960
old locus tag: HIV01_001960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002814328.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YceD family protein
translation: MSADLPGILDAWRMVATRRGLEGRVPLSSLTRLRNSLVDTEGEVRFALEFDSDALRVPYVELRIDAELPLTCQRSLQRFLYPVNIVQRLGLIRDEADEAALPEGYEPLLVPEDGQLRTVELVEDELILAVPVVPIMPGTEAVERDWPATEQAEEPERVNPFAALSALKKQSN
SIO_010081: HIV01_RS01960
subclass of: SO_0000673
so part of: HIV01_RS01960
location: 374847..375365
location: region:374847-375365:1
so has part: feature:374847-375365:1:exon

WP_200604590.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:374847-375365:1:exon

HIV01_RS01965
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rpmF
locus tag: HIV01_RS01965
old locus tag: HIV01_001965
so part of: sequence
location: 375385..375579
location: region:375385-375579:1
so has part: feature:375385-375579:1:exon
subclass of: SO_0000010

position:375385:1
position: 375385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:375579:1
position: 375579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:375385-375579:1:exon

HIV01_RS01965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rpmF
locus tag: HIV01_RS01965
old locus tag: HIV01_001965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009608206.1
GO component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 50S ribosomal protein L32
translation: MAVQKSRVSPSKRGMRRSHDALSAKQLATDPTTGETHLRHHVTADGYYRGKKVIDTKSKVADEE
SIO_010081: HIV01_RS01965
subclass of: SO_0000673
so part of: HIV01_RS01965
location: 375385..375579
location: region:375385-375579:1
so has part: feature:375385-375579:1:exon

WP_115842959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:375385-375579:1:exon

HIV01_RS01970
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01970
old locus tag: HIV01_001970
so part of: sequence
location: 375748..376728
location: region:375748-376728:1
so has part: feature:375748-376728:1:exon
subclass of: SO_0000010

position:375748:1
position: 375748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:376728:1
position: 376728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:375748-376728:1:exon

HIV01_RS01970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01970
old locus tag: HIV01_001970
EC number: 2.3.1.180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014502254.1
GO function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0033818 - beta-ketoacyl-acyl-carrier-protein synthase III activity [Evidence IEA]
GO process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: beta-ketoacyl-ACP synthase III
translation: MTQQIYSRIAGTGSYLPEKVLTNDDLAKFIDTSDEWIAARTGIRERHVAAEGEFTSDLAYHASVRALEAAGVDAKDLDLIVVGTTTPDLIFPSTACLLQHRIGAGGCAAFDVNAACSGFIYALTVADKFIRSGAAKTVLVVGAETLTRMLDWSDRSTCVLFGDGAGAVVLKADTETGILSTHMHADGGKKELLWNPVGVSVGFKPDEPNAGVKVLMTGNEVFKHAVKALDSVVEETLEANGLDRHDIDWLIPHQANLRIIEATAKRLDMPMDRVIVTVDKHGNTSSGSVPLALDEAVRSGRVQRGQLVLLEAFGGGFTWGSALLRY
SIO_010081: HIV01_RS01970
subclass of: SO_0000673
so part of: HIV01_RS01970
location: 375748..376728
location: region:375748-376728:1
so has part: feature:375748-376728:1:exon

WP_200604591.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:375748-376728:1:exon

HIV01_RS01975
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: fabD
locus tag: HIV01_RS01975
old locus tag: HIV01_001975
so part of: sequence
location: 376925..377887
location: region:376925-377887:1
so has part: feature:376925-377887:1:exon
subclass of: SO_0000010

position:376925:1
position: 376925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:377887:1
position: 377887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:376925-377887:1:exon

HIV01_RS01975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: fabD
locus tag: HIV01_RS01975
old locus tag: HIV01_001975
EC number: 2.3.1.39
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014161146.1
GO function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]
GO process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ACP S-malonyltransferase
translation: MTATPHTDSTLAFVFPGQGSQSLGMLAELGELHPIIREAFAEASDGAGVDLWALSQGGPEEMLNRTEYTQPALLAAGAAVWRLWQQRGGAMPALLSGHSLGEYTALIAAGSLSLKDAAHLVRLRGQLMQEAAPAGTGAMAAVLGADDALVQEVCASVSGTTVVVPANYNSPRQIVIGGHADAVDKAMAVLGERGVRKMVKLAVSVPSHTPLMREAANRLAEAMAGMAWHAPKLPVVQNVDAGIHASVDAIRDALVRQLYLPVQWTGCVQALAAKGVTRIAECGPGKVLAGLVKRIDKTLDGRALGTPGEFETAIEEWNKA
SIO_010081: HIV01_RS01975
subclass of: SO_0000673
so part of: HIV01_RS01975
location: 376925..377887
location: region:376925-377887:1
so has part: feature:376925-377887:1:exon

WP_280633577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:376925-377887:1:exon

HIV01_RS01980
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: fabG
locus tag: HIV01_RS01980
old locus tag: HIV01_001980
so part of: sequence
location: 377884..378630
location: region:377884-378630:1
so has part: feature:377884-378630:1:exon
subclass of: SO_0000010

position:377884:1
position: 377884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:378630:1
position: 378630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:377884-378630:1:exon

HIV01_RS01980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: fabG
locus tag: HIV01_RS01980
old locus tag: HIV01_001980
EC number: 1.1.1.100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014161145.1
GO function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-oxoacyl-ACP reductase FabG
translation: MSEKLLTGEIALVTGASRGIGAAIADELAAQGATVIGTATSESGAKAIGERLAAHGGHGRVLDVSDAASIDVLIDGIAKEFGAVSILVNNAGITRDNLLMRMKDEDWQAILDTNLTSVFRTSKAVMRAMMKARKGRIINIASVIGVTGNAGQANYAAAKAGIIAFSKSMAREIGSRGITVNVVAPGFIDTDMTKALPEDAKSAMLGQIALGRFGEPADIARAVAFLAGPSAAYITGETLHVNGGMYMP
SIO_010081: HIV01_RS01980
subclass of: SO_0000673
so part of: HIV01_RS01980
location: 377884..378630
location: region:377884-378630:1
so has part: feature:377884-378630:1:exon

WP_200604592.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:377884-378630:1:exon

HIV01_RS01985
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: acpP
locus tag: HIV01_RS01985
old locus tag: HIV01_001985
so part of: sequence
location: 378773..379012
location: region:378773-379012:1
so has part: feature:378773-379012:1:exon
subclass of: SO_0000010

position:378773:1
position: 378773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:379012:1
position: 379012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:378773-379012:1:exon

HIV01_RS01985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: acpP
locus tag: HIV01_RS01985
old locus tag: HIV01_001985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013535667.1
GO process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acyl carrier protein
translation: MSSIEERVKKIVVEQLGVKEEEVTNNASFVDDLGADSLDTVELVMALEEEFECEIPDEEAEKITSVQQAIDYVKAHVKS
SIO_010081: HIV01_RS01985
subclass of: SO_0000673
so part of: HIV01_RS01985
location: 378773..379012
location: region:378773-379012:1
so has part: feature:378773-379012:1:exon

WP_031373652.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:378773-379012:1:exon

HIV01_RS01990
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: fabF
locus tag: HIV01_RS01990
old locus tag: HIV01_001990
so part of: sequence
location: 379141..380391
location: region:379141-380391:1
so has part: feature:379141-380391:1:exon
subclass of: SO_0000010

position:379141:1
position: 379141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:380391:1
position: 380391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:379141-380391:1:exon

HIV01_RS01990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: fabF
locus tag: HIV01_RS01990
old locus tag: HIV01_001990
EC number: 2.3.1.179
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019302031.1
GO function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: beta-ketoacyl-ACP synthase II
translation: MSNRAFNRRVVVTGLGIVSPLGNDLASSWDGIVNGRSGIGPITNFDASAFTTRIAGEVRNFDVTQWVSPKDAKKMEEFIHYGVAASMMAIQDAGITVDESNAERIGALIGSGIGGLLGIEEQTIKYHEGGPRKVSPFYVPSTIINMLPGQVSLLTGIKGPNFSAVSACATANHSIGMAMRMIQYGDADVMVAGGAERGSSPTSVAGFCSMKAMSTRNDDPTRASRPWDKDRDGFVLGDGAGILILEEYERAKARGARIYCELSGFGASSDAFHMTAPSENGEGPARCMVAALNDAGVNADQVGYLNAHGTSTPLGDLAETLAIKRALGDHAYKTMVSSTKSMTGHLLGAAGGVEAIFSVLALHHGIIPPTINLDEAGEGCDLDYVPNVARQAQIDVAVSNGFGFGGTNGTLVFKRI
SIO_010081: HIV01_RS01990
subclass of: SO_0000673
so part of: HIV01_RS01990
location: 379141..380391
location: region:379141-380391:1
so has part: feature:379141-380391:1:exon

WP_200604593.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:379141-380391:1:exon

HIV01_RS01995
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS01995
old locus tag: HIV01_001995
so part of: sequence
location: 380498..381868
location: region:380498-381868:1
so has part: feature:380498-381868:1:exon
subclass of: SO_0000010

position:380498:1
position: 380498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:381868:1
position: 381868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:380498-381868:1:exon

HIV01_RS01995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS01995
old locus tag: HIV01_001995
EC number: 2.6.1.85
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014161142.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminodeoxychorismate synthase component I
translation: MLLTRSLPASFDLLSLQRLAPDRYPLLLESSAHGTAQGRWDLLLVASGDSLRLEPDGATRDAAGAVVEGDFFAALDAQWQSLRVARDEPRWPFRGGWALFFGYEAAAQVEPVLKLPRAEGRLPVALALRCPAAVLRDHTSGECVLVTEMGHDGLVAAVLSDIDAAAKLPDIAPWQTPGALEEDEPERFTDGVRRVLDYLAAGDVFQANLSRGWVARFDQPLQPAALFERLRQNNPAPFAGVFAGADWAVVSASPERLVSVRGDVVETRPIAGTRPRFAGDDDAARIQELVGHPKERAEHVMLIDLERNDLGRVCAPGSVEVDELMTVESYAHVHHIVSNVRGRLRQDATPGQVIRAVFPGGTITGCPKVRCMQIIAELEGVGRGAYTGAMGWLNRDGDLDLNILIRSAELEPDAAGGATLRFRTGAGIVADSDPQRELDETRAKARGMLRALGVAG
SIO_010081: HIV01_RS01995
subclass of: SO_0000673
so part of: HIV01_RS01995
location: 380498..381868
location: region:380498-381868:1
so has part: feature:380498-381868:1:exon

WP_200604594.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:380498-381868:1:exon

HIV01_RS02000
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: pabC
locus tag: HIV01_RS02000
old locus tag: HIV01_002000
so part of: sequence
location: 381865..382686
location: region:381865-382686:1
so has part: feature:381865-382686:1:exon
subclass of: SO_0000010

position:381865:1
position: 381865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:382686:1
position: 382686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:381865-382686:1:exon

HIV01_RS02000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: pabC
locus tag: HIV01_RS02000
old locus tag: HIV01_002000
EC number: 4.1.3.38
inference: COORDINATES: protein motif:HMM:TIGR03461.1
GO function: GO:0008696 - 4-amino-4-deoxychorismate lyase activity [Evidence IEA]
GO process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO:0008153 - para-aminobenzoic acid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminodeoxychorismate lyase
translation: MSVTAVRYFVGDQTVPALPDLDRGLAYGDGLFETVRAHQGRMHWWPAHWQRLQRGAAMLRITLPDERIVLAEATRLLDGGNVVLKLVVTRGSGGRGYSPVQACVPNWTLSTHPLPPSPAAGLSLRWCDTRLALQPALAGIKHCNRLEQVLARGEWDDPAIDEGLVCSSEGDVVSATAANVFILRQGAWSTPQVDRCGVAGVCRAWALKALPAREARLAVTDVEAADAVFLCNGVRGILPVARLGARTWQPHLQVVALQHRLAAEHPAFATEVS
SIO_010081: HIV01_RS02000
subclass of: SO_0000673
so part of: HIV01_RS02000
location: 381865..382686
location: region:381865-382686:1
so has part: feature:381865-382686:1:exon

WP_200604595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:381865-382686:1:exon

HIV01_RS02005
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: mltG
locus tag: HIV01_RS02005
old locus tag: HIV01_002005
so part of: sequence
location: 382749..383768
location: region:382749-383768:1
so has part: feature:382749-383768:1:exon
subclass of: SO_0000010

position:382749:1
position: 382749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:383768:1
position: 383768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:382749-383768:1:exon

HIV01_RS02005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: mltG
locus tag: HIV01_RS02005
old locus tag: HIV01_002005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003468810.1
GO function: GO:0008932 - lytic endotransglycosylase activity [Evidence IEA]
GO process: GO:0071555 - cell wall organization [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: endolytic transglycosylase MltG
translation: MLLLLLIAAGAGFWAWQRYTGFADAPMSGLEPGETVMVERGDSLPTVVRKLREAGVREGDLLEWRALAKQLGAAGKLQVGEYAIEPGTSPRALLVAMREGRVIRHRFTIVEGWNIRELRAALAKAKPLKLETGKLDNAALMKAVGAPGQHPEGRFLPETYLYTRGDSDLDVLKRAHAAMDKALDAAWQQRSADNVLKTPDEMLVLASIVEKETGIASERPQIAGLFARRLKLGMRLETDPTVIYGIGSTYDGNIRKSDLRADNPYNTYLIAGLPPTPIAMPGIGALEAVAKPADGDALFFVAVGDGSGRHLFARTYAEHQANVRAYLKKYRAAQSGNGP
SIO_010081: HIV01_RS02005
subclass of: SO_0000673
so part of: HIV01_RS02005
location: 382749..383768
location: region:382749-383768:1
so has part: feature:382749-383768:1:exon

WP_200606302.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:382749-383768:1:exon

HIV01_RS02010
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: tmk
locus tag: HIV01_RS02010
old locus tag: HIV01_002010
so part of: sequence
location: 383780..384433
location: region:383780-384433:1
so has part: feature:383780-384433:1:exon
subclass of: SO_0000010

position:383780:1
position: 383780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:384433:1
position: 384433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:383780-384433:1:exon

HIV01_RS02010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: tmk
locus tag: HIV01_RS02010
old locus tag: HIV01_002010
EC number: 2.7.4.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009608236.1
GO function: GO:0004798 - thymidylate kinase activity [Evidence IEA]
GO process: GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTMP kinase
translation: MKDAGTPLQRQSRFITLEGGEGAGKSTVLAALREVLAATGEEVVSTREPGGTPLAEQIRGLLLDTHHEPPTTDTELLLVFAARAQHVRETIVPALQRGAWVISDRFTDASYAYQGSARGGDVQFIAELERRVVGIAPALTLLLDVPVSIGLQRARGRGASDRIEGEHDDFFERVRSGYLARASAQPERFRVIDATQPADVVAAEAVAHLRAFIEASA
SIO_010081: HIV01_RS02010
subclass of: SO_0000673
so part of: HIV01_RS02010
location: 383780..384433
location: region:383780-384433:1
so has part: feature:383780-384433:1:exon

WP_200606303.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:383780-384433:1:exon

HIV01_RS02015
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02015
old locus tag: HIV01_002015
so part of: sequence
location: 384430..385395
location: region:384430-385395:1
so has part: feature:384430-385395:1:exon
subclass of: SO_0000010

position:384430:1
position: 384430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:385395:1
position: 385395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:384430-385395:1:exon

HIV01_RS02015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02015
old locus tag: HIV01_002015
EC number: 2.7.7.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019659492.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA polymerase III subunit delta'
translation: MSTFAPWQQRVYDQAVAAQASGRLAHGLLFCGPAQLGKRAVAERLAQRLLCQQPAAAGEPCGNCRSCHLLAAGTHPDYQFVSFVPNKEGTRLRTEIVIEQIRQVSEKLSLTPQYGGAQVVIIDPAEAVNHAACNALLKTLEEPVPGRYLWLLSAHPARLPATIRSRCQRYEFRLPQAAESLAWLKQLGHSDASAREALEAARGHPGLANEWLGNDGLKLRREVGSDLAKLARGDVGAVETAQRWVGDDNAAVRLRHAADLALADAAGLTDPGRTRSLAAWFDQANRTRDLLRTTVRADLAVTELLLAWHALHGRRAEGGSR
SIO_010081: HIV01_RS02015
subclass of: SO_0000673
so part of: HIV01_RS02015
location: 384430..385395
location: region:384430-385395:1
so has part: feature:384430-385395:1:exon

WP_200604596.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:384430-385395:1:exon

HIV01_RS02020
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02020
old locus tag: HIV01_002020
so part of: sequence
location: 385395..385760
location: region:385395-385760:1
so has part: feature:385395-385760:1:exon
subclass of: SO_0000010

position:385760:1
position: 385760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:385395-385760:1:exon

HIV01_RS02020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02020
old locus tag: HIV01_002020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017155784.1
GO function: GO:0035438 - cyclic-di-GMP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PilZ domain-containing protein
translation: MSGMNSAGGARQGILSCAIKDKAQLYSAYMPFLKGGGVFVATPKRYFLGDEVFLLLTLPESNERLPVAGKVVWVTPVGAQGNRPAGIGVQFAETAEGETVRGKIEALLAGSLNAERATHTM
SIO_010081: HIV01_RS02020
subclass of: SO_0000673
so part of: HIV01_RS02020
location: 385395..385760
location: region:385395-385760:1
so has part: feature:385395-385760:1:exon

WP_200604597.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:385395-385760:1:exon

HIV01_RS02025
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02025
old locus tag: HIV01_002025
so part of: sequence
location: complement(385866..387920)
location: region:385866-387920:-1
so has part: feature:385866-387920:-1:exon
subclass of: SO_0000010

position:385866:-1
position: 385866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:387920:-1
position: 387920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:385866-387920:-1:exon

HIV01_RS02025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02025
old locus tag: HIV01_002025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011036460.1
GO function: GO:0070403 - NAD+ binding [Evidence IEA]
GO process: GO:0006631 - fatty acid metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
translation: MIAGLDGLRFQHWQTELRADGVLVLSFDRAGAPVNTFAQDVLIELDTLIERLALDPPKGLVLRSAKASGFIAGADIKEFQTFDAKGTVGDAIRRGQQTFQRLAELPCPTVAAIHGFCMGGGTEIALACRYRVASNDPSTRIGLPEVKLGIYPGWGGSVRLPRLIGAPAAFDMMLTGRTLSASAARANGLVDKVTDASSLIDVAAAYALRGSQRPFKQRALAWATNTLPARKLLAPMLTKQVARKARKEHYPAPYALINTWANSGGGIQNLLSAERKSVVKLASTPTARNLIRVFFLQERLKGQGSKEHGISHVHVVGAGVMGGDIAAWSAYKGFNVTLQDREQRFIDGALTRAQTLFEKKVKDEAKRMDVAARLKGDLAGEGVGSADLVIEAIIEKAEAKRELYAELEPRMKFDALLTTNTSSIPLTELREHIGRPAHFAGLHYFNPVALMPLVEIIHHDRVAPQTQQRLAAFCKAIDKLPVPVAGTPGFLVNRVLFPYMLEAATAYAEGIPGAAIDKAAVKFGMPMGPIELIDTVGLDVASGVGGELAPFLGLPIPSSLATPPQQGKRGKKDGQGLYKWENGKAIKPALPKDYQTPSDLEDRLILPLLNEAVACLHDGVVSDADLLDAGVIFGTGFAPFRGGPIQYIRETGADALLTRLQQLHARYGDRFAPRPGWDSGALRS
SIO_010081: HIV01_RS02025
subclass of: SO_0000673
so part of: HIV01_RS02025
location: complement(385866..387920)
location: region:385866-387920:-1
so has part: feature:385866-387920:-1:exon

WP_200604598.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:385866-387920:-1:exon

HIV01_RS02030
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rpoE
locus tag: HIV01_RS02030
old locus tag: HIV01_002030
so part of: sequence
location: 388184..388804
location: region:388184-388804:1
so has part: feature:388184-388804:1:exon
subclass of: SO_0000010

position:388184:1
position: 388184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:388804:1
position: 388804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:388184-388804:1:exon

HIV01_RS02030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rpoE
locus tag: HIV01_RS02030
old locus tag: HIV01_002030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009583159.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0016987 - sigma factor activity [Evidence IEA]
GO process: GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA polymerase sigma factor RpoE
translation: MAELVLSKDVELDQELVERVQRGDSAAFDALVRKYQHRITALIGRYIPDWSECQDVAQETFIRAYRALPNFRGDAQFYTWLHRIAVNTAKNYLVAQNRRPPTDDIDAGDAEQFDTGTRLRDTDTPEHELLRQEIERTLMRVVEALPEELRTAITMREMDGLSYEEIAQKMGCPIGTVRSRIFRAREAIDAELRPLLDNDSAEASKR
SIO_010081: HIV01_RS02030
subclass of: SO_0000673
so part of: HIV01_RS02030
location: 388184..388804
location: region:388184-388804:1
so has part: feature:388184-388804:1:exon

WP_200604599.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:388184-388804:1:exon

HIV01_RS02035
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02035
old locus tag: HIV01_002035
so part of: sequence
location: 388801..389718
location: region:388801-389718:1
so has part: feature:388801-389718:1:exon
subclass of: SO_0000010

position:388801:1
position: 388801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:389718:1
position: 389718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:388801-389718:1:exon

HIV01_RS02035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02035
old locus tag: HIV01_002035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011036462.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sigma-E factor negative regulatory protein
translation: MNTPGTDERGFDERENLCALFDGELQGDAARFALRRLGHDAQWRQACGRWQLYGDVLRGQATAIASSSFADRVAQAIAQEPVLAPVASTATSVSPRRSAAASRRGWIGGALAASVAVAALFVTRPFSSETAPAAADGATTQVAAAATVPDVPAPSVPSPGVPDAPDHQAGLSAAAVAAVEVPRRAAERRSTRSQSQRAALRASRQARMPAPATAVASAAPLVAHAALASTEGAAVTAKPFQPEHPEVTARPWPRAVLPQYSGNAGLTASYGSGASSPSFYPFEPSLAAPATNPTAAEVESTAPQR
SIO_010081: HIV01_RS02035
subclass of: SO_0000673
so part of: HIV01_RS02035
location: 388801..389718
location: region:388801-389718:1
so has part: feature:388801-389718:1:exon

WP_200604600.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:388801-389718:1:exon

HIV01_RS02040
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02040
old locus tag: HIV01_002040
so part of: sequence
location: 389831..391348
location: region:389831-391348:1
so has part: feature:389831-391348:1:exon
subclass of: SO_0000010

position:389831:1
position: 389831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:391348:1
position: 391348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:389831-391348:1:exon

HIV01_RS02040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02040
old locus tag: HIV01_002040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019662170.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DegQ family serine endoprotease
translation: MNRPLRSLALVTALAASLPVACTAQPPATPIAPPPAATPAAPLVSGLPDFTNLVQRVGPAVVNIQAEAAPQRNVRGAPDDEQIPEIFRRFFGDDMPFPGGPGGPRGPRGGGTSMGSGFLMSADGYVMTNHHVVEGADTVTVKLSDRREFTAKVIGSDEQSDVALLKIDAKGLPFLRMANANSTKAGQWVIAIGSPFGLDHSVTAGIVSAVGRSNPYANQRYVPFIQTDVAINQGNSGGPLLNTSGEVVGINSQIFSNSGGYMGVSFAIPIDVAMGAAEQLRATGKVSRGQLGVQVQQITSESAKGLGLPDSRGALIADVLPGSPAEKAGIERGDVIRAVDGRDINESSDLPPIIGSMAPGTKAKVSVFRNGRNVDLSVVVDELDATVADGSGSPRPSIGGGESRPSAGNTLGLVGQDLSSSDRQRLGLRGNEGVLVRNPGDAAAEAGLRPGDVVLSVGRNSVASASALDRELASVKPGQTVMLLVRRQGGTQFIAVTADDAAKAG
SIO_010081: HIV01_RS02040
subclass of: SO_0000673
so part of: HIV01_RS02040
location: 389831..391348
location: region:389831-391348:1
so has part: feature:389831-391348:1:exon

WP_200604601.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:389831-391348:1:exon

HIV01_RS02045
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: lepA
locus tag: HIV01_RS02045
old locus tag: HIV01_002045
so part of: sequence
location: 391512..393305
location: region:391512-393305:1
so has part: feature:391512-393305:1:exon
subclass of: SO_0000010

position:391512:1
position: 391512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:393305:1
position: 393305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:391512-393305:1:exon

HIV01_RS02045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: lepA
locus tag: HIV01_RS02045
old locus tag: HIV01_002045
EC number: 3.6.5.n1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014038088.1
GO function: GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: translation elongation factor 4
translation: MQQIRNFSIIAHVDHGKSTLADRIIQLCGGLEAREMEAQVLDSNPIERERGITIKAQSVSLPYKAKDGLTYFLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQSVANCYTAVEQGLEVVPVLNKIDLPTADIERAKAEIEAVIGIDAEDAVAISAKTGLNVVDVLEAIVHRIPPPKPRDTDKLQALIIDSWFDNYLGVVSLVRVMQGEIKPGDKLLVMSTGRTHQVDKVGVFTPKRKDLPKLGAGEVGWIHAAIKDVHGAPVGDTLTSATDPASKPLPGFQEMQPRVFAGLFPVDAEDYPDLREALDKLRLNDAALRFEPESSEAMGFGFRCGFLGMLHMEIVQERLEREYNLNLISTAPTVVYEVLKTDGSIVSMDNPAKLPPVNMIEEVREPIIRANILTPPDYVGNVITLCEEKRGVQIGIQYMGGQVQISYELPMAEVVLDCFDRLKSVSRGYASLDYHFLRFQAGPFVRVDTLINGDKVDALSIITHRSHADRRGRDLCERMKELIPRQMFDVAIQAAVGSQIIARSTVKAMRKNVLAKCYGGDISRKKKLLEKQKEGKKRMKQVGRVEIPQEAFLAVLQVDNK
SIO_010081: HIV01_RS02045
subclass of: SO_0000673
so part of: HIV01_RS02045
location: 391512..393305
location: region:391512-393305:1
so has part: feature:391512-393305:1:exon

WP_207527053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:391512-393305:1:exon

HIV01_RS02050
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: lepB
locus tag: HIV01_RS02050
old locus tag: HIV01_002050
pseudo: true
so part of: sequence
location: 393519..394305
location: region:393519-394305:1
so has part: feature:393519-394305:1:exon
subclass of: SO_0000010

position:393519:1
position: 393519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:394305:1
position: 394305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393519-394305:1:exon

HIV01_RS02050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: lepB
locus tag: HIV01_RS02050
old locus tag: HIV01_002050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017155604.1
GO function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO process: GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: signal peptidase I
SIO_010081: HIV01_RS02050
subclass of: SO_0000673
so part of: HIV01_RS02050
location: 393519..394305
location: region:393519-394305:1
so has part: feature:393519-394305:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:393519-394305:1:exon

HIV01_RS02055
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02055
old locus tag: HIV01_002055
pseudo: true
so part of: sequence
location: 394404..394785
location: region:394404-394785:1
so has part: feature:394404-394785:1:exon
subclass of: SO_0000010

position:394404:1
position: 394404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:394785:1
position: 394785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394404-394785:1:exon

HIV01_RS02055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02055
old locus tag: HIV01_002055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014647998.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF4845 domain-containing protein
SIO_010081: HIV01_RS02055
subclass of: SO_0000673
so part of: HIV01_RS02055
location: 394404..394785
location: region:394404-394785:1
so has part: feature:394404-394785:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:394404-394785:1:exon

HIV01_RS02060
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rnc
locus tag: HIV01_RS02060
old locus tag: HIV01_002060
so part of: sequence
location: 394778..395440
location: region:394778-395440:1
so has part: feature:394778-395440:1:exon
subclass of: SO_0000010

position:394778:1
position: 394778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:395440:1
position: 395440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394778-395440:1:exon

HIV01_RS02060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rnc
locus tag: HIV01_RS02060
old locus tag: HIV01_002060
EC number: 3.1.26.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005991960.1
GO function: GO:0004525 - ribonuclease III activity [Evidence IEA]
GO process: GO:0006396 - RNA processing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribonuclease III
translation: MSDRIGYRFNTQGLLDQALTHRSAGAPHNERLEFLGDALVNLIVAEALYTHWPRADEGALTRARAELVRESALAPISRELELGARLTLGPGEMKSGGHRRDSILADALEAVIGAIYLDSDFQTCRAAVLPWFEAAIAALPPPHKVGKDAKTRLQEWLQGRQKPLPVYALLSESGEDHAKSFVVTCTLVQPPLLTQGEAGSRRAAEQIAAEVALERLKIDD
SIO_010081: HIV01_RS02060
subclass of: SO_0000673
so part of: HIV01_RS02060
location: 394778..395440
location: region:394778-395440:1
so has part: feature:394778-395440:1:exon

WP_200604605.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:394778-395440:1:exon

HIV01_RS02065
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: era
locus tag: HIV01_RS02065
old locus tag: HIV01_002065
so part of: sequence
location: 395522..396418
location: region:395522-396418:1
so has part: feature:395522-396418:1:exon
subclass of: SO_0000010

position:395522:1
position: 395522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:396418:1
position: 396418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:395522-396418:1:exon

HIV01_RS02065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: era
locus tag: HIV01_RS02065
old locus tag: HIV01_002065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010340598.1
GO function: GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GTPase Era
translation: MNTPTHRAGHVAVIGRPNVGKSTLVNALVGAKVSITSSRPQTTRHQLLGIATFPEGQLLLVDTPGIHREQKRAMNRWMNRAARGALEGVDTAVLVVRAGQWEDDDALAYDALKNAGVPVVLVVNQVDRLKDKASLLPYLAKVSAGRDFAGVHPISALKRSGLEALVKTVLAQLPEQEALYGEDEITDKSQRFLAGEMVREQLMRQLGEELPYATTVEIEKFEVDGNLLRIGAVIWVERDGQKAIVIGKGGERLREIGSRSRQQMERLFGSKVFLETWVRVREGWSDDEAALRAFGYHD
SIO_010081: HIV01_RS02065
subclass of: SO_0000673
so part of: HIV01_RS02065
location: 395522..396418
location: region:395522-396418:1
so has part: feature:395522-396418:1:exon

WP_200604606.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:395522-396418:1:exon

HIV01_RS02070
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: recO
locus tag: HIV01_RS02070
old locus tag: HIV01_002070
so part of: sequence
location: 396418..397176
location: region:396418-397176:1
so has part: feature:396418-397176:1:exon
subclass of: SO_0000010

position:397176:1
position: 397176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:396418-397176:1:exon

HIV01_RS02070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: recO
locus tag: HIV01_RS02070
old locus tag: HIV01_002070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011036469.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA repair protein RecO
translation: MRLSNEPAFVLHARPWRETSLLVEVLSANHGRLGLVARGVQGPKRQVLRAALQPLQSIRFDAVQVGELARLVSAEATDVAPRLGGEAMLAGFYLNELTLRLAPRQDPAPDLYDAYALARARIGAGDALGWTLRRYERDLLDALGFGFDWHHDGDGAPIDPAARYRLDPEFGPRRLLSDRGHGDRSTAATGRALLALADDSAPDPEDQQGLRRAMRGVLSHYLGSRGLKSWEMLAELGRVTARRETPDPAGSS
SIO_010081: HIV01_RS02070
subclass of: SO_0000673
so part of: HIV01_RS02070
location: 396418..397176
location: region:396418-397176:1
so has part: feature:396418-397176:1:exon

WP_200604607.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:396418-397176:1:exon

HIV01_RS02075
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02075
old locus tag: HIV01_002075
so part of: sequence
location: complement(397207..397959)
location: region:397207-397959:-1
so has part: feature:397207-397959:-1:exon
subclass of: SO_0000010

position:397207:-1
position: 397207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:397959:-1
position: 397959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:397207-397959:-1:exon

HIV01_RS02075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02075
old locus tag: HIV01_002075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010342279.1
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator
translation: MTPHQQPPRTAPPHAAPPRVLLVEDDPISRSFLAAALAAVPAEVDAADSVAAAVALASSQDYALWMIDARLPDGSGSELLARLREKHPHTPALAHTAAHESTILDALLAAGFGEALVKPMPAATVQAAVRRLLGLSGGPARIDAVADDGPLPLWDYEAAARALNGNRTHVDTLRGLFAQELPKSLQAITDASARGDSDAMRADLHRLRASCGFVGALRLGSAVEALHREPASAGLREAFVQAARETMDSL
SIO_010081: HIV01_RS02075
subclass of: SO_0000673
so part of: HIV01_RS02075
location: complement(397207..397959)
location: region:397207-397959:-1
so has part: feature:397207-397959:-1:exon

WP_200604608.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:397207-397959:-1:exon

HIV01_RS02080
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02080
old locus tag: HIV01_002080
so part of: sequence
location: 397993..400026
location: region:397993-400026:1
so has part: feature:397993-400026:1:exon
subclass of: SO_0000010

position:397993:1
position: 397993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:400026:1
position: 400026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:397993-400026:1:exon

HIV01_RS02080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02080
old locus tag: HIV01_002080
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRAILRLLLVCLLSVPLATGAAHARTAQARIARVTLAVATMSDVQVRLEWPAGSSQGALELRAGRVEAPDLGYSYSNVTWRCPLSRDRDRWRCEGDVRSGNSRPLRLALDLDPARIDGRLSQGGGTLAMQRLAATPDLTRIDLTRVPVAWAQALLAQAWPQGRLKAGTATGRLDVLAPTKAPLRVSGPLNLQGLAFDTADGTVAGENIGAQLEIDGELAATTRVGIEGQLHGGEMLFGNAYLALQQRRVDLAIQAEQHEGGGWELPKLAWNDRGVLRIDARAALDPQMQLRTLDLRAHSANLAPLRDGYLTGFLGLAGLGELQLGGAADGRVRIERGELREADFNLDSVVVDDPRGRFRFDGLEGDVRYSASATRDSELRWSGGALHGLAFGQARLPMRSTDGVLQLTQPVSMPLLGGRAGFDHFQIKPPAADKGLEIRFGLELEQLDVAQLSTALGWPAFTGQLTGHIPEARYADDRLDFEGGLAMELFGGTVQVSSLAMERPFGVAPTLSSDIAFDDIDLESLTGVLGFGTITGKLDGRIADLRLVDWQPVAFTSYLQTDAAAAKADGVRQRVSQRAVQDLSSVSDASFVSGLQAQLIGFFDDFGYREIGIACRLVDEVCEMEGLGSAGPGFIIVEGSGLPRLSVVGFNRRVDWPTLLERLVAASSGDVKPVFE
SIO_010081: HIV01_RS02080
subclass of: SO_0000673
so part of: HIV01_RS02080
location: 397993..400026
location: region:397993-400026:1
so has part: feature:397993-400026:1:exon

WP_200604609.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:397993-400026:1:exon

HIV01_RS02085
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02085
old locus tag: HIV01_002085
so part of: sequence
location: 400090..400716
location: region:400090-400716:1
so has part: feature:400090-400716:1:exon
subclass of: SO_0000010

position:400090:1
position: 400090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:400716:1
position: 400716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:400090-400716:1:exon

HIV01_RS02085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02085
old locus tag: HIV01_002085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007805342.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1318 domain-containing protein
translation: MRRWMGVPVAAVMLTACVTINVYFPAAEAKEAAKEFVEKVIGDEAQQSQPKPQDKPGGQSASLNPQRSDSLALRIDWLSLVGIGTAQAQDQPDINIKTPAIQAIQSRMASRFDSQLRAHFDSGALGFANDGTISVRDASKIPLPERVGVNQAVAEQGRDAKAVYREIAVANNHPEWEQQIRAVFARQWIDSARGGWWVQDAGGGWKQK
SIO_010081: HIV01_RS02085
subclass of: SO_0000673
so part of: HIV01_RS02085
location: 400090..400716
location: region:400090-400716:1
so has part: feature:400090-400716:1:exon

WP_200604610.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:400090-400716:1:exon

HIV01_RS02090
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rlmD
locus tag: HIV01_RS02090
old locus tag: HIV01_002090
so part of: sequence
location: 400854..402185
location: region:400854-402185:1
so has part: feature:400854-402185:1:exon
subclass of: SO_0000010

position:400854:1
position: 400854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:402185:1
position: 402185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:400854-402185:1:exon

HIV01_RS02090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rlmD
locus tag: HIV01_RS02090
old locus tag: HIV01_002090
EC number: 2.1.1.190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019398097.1
GO function: GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO process: GO:0006396 - RNA processing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
translation: MARIDQTPFEVQITGLTHDGRGVARRPDGKAVFVAGALPGERVMASQTGRHRSFDEARTVDVLEAAPERVDPRCPHFGTCSGCALQHYAEDKQILAKQNVLMENFERIGHVTPERILAPLTDASWGYRRKGRFSVRRVEKKDKTLVGFRETDPRFVADLRECHTVIPQIGESIGALAALVDGLQARREIPQIEFIAGDPTPDFSGIALTIRHLVPLTDADKDALVAFGKAHGFAIFLQPAGVDSVHPLWPAEPRLAFSLEQWNLEFLFRPLDFIQVNAGLNGKMIQHAIDLLQPQPGDRVLDLFAGLGNFTLPLARQVREVVGVEGEAGLVRRARENAAHNGIANADFHAADLAKDLSGESWMKQGFDKLLLDPPRSGADVVLAQLPLKQFGRIVYVSCHPASLARDAGYLVNERGWKLRAAGVMDMFPHTAHVESIAMFEPG
SIO_010081: HIV01_RS02090
subclass of: SO_0000673
so part of: HIV01_RS02090
location: 400854..402185
location: region:400854-402185:1
so has part: feature:400854-402185:1:exon

WP_200604611.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:400854-402185:1:exon

HIV01_RS02095
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02095
old locus tag: HIV01_002095
so part of: sequence
location: 402208..402732
location: region:402208-402732:1
so has part: feature:402208-402732:1:exon
subclass of: SO_0000010

position:402208:1
position: 402208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:402732:1
position: 402732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:402208-402732:1:exon

HIV01_RS02095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02095
old locus tag: HIV01_002095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019183444.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CYTH domain-containing protein
translation: MGIEIERKFLVTGDGWRAAAREVVPMAQGYINDQAAMDSGAMRASVRVRIAGDEAFLNLKSRELGHTRQEFDYPIPVDDARGLLALCVGGLVDKRRHYVEHEGHLWEVDEFLGDNAGLVVAEIELSSADEAFARPAWIGAEVTEAVRYYNLALATRPYSQWSESERSGAVASTH
SIO_010081: HIV01_RS02095
subclass of: SO_0000673
so part of: HIV01_RS02095
location: 402208..402732
location: region:402208-402732:1
so has part: feature:402208-402732:1:exon

WP_200604612.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:402208-402732:1:exon

HIV01_RS02100
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02100
old locus tag: HIV01_002100
so part of: sequence
location: 402765..403478
location: region:402765-403478:1
so has part: feature:402765-403478:1:exon
subclass of: SO_0000010

position:402765:1
position: 402765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:403478:1
position: 403478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:402765-403478:1:exon

HIV01_RS02100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02100
old locus tag: HIV01_002100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017911030.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DsbA family oxidoreductase
translation: MRIDIWSDVVCPWCWIGKQRLRTALAQLGEAGQNADIHWHAFQLDPESDETPVPLREAYERKFGGAQRTEQILAQTQAAGRAEGLPFDFGRGQVRVNTLKAHRLVWLAGQEGDADKVGEALFHAHFAEGRNLADTQTLVDAGAAGGLSEQRVRAMLDSDEGLAEVRAQLGQARALGIQAVPTFVLDGRLAVQGAQTPDVFRDAFAKIGIAPAVAAADASKDAAGKDDAACGPDGCAV
SIO_010081: HIV01_RS02100
subclass of: SO_0000673
so part of: HIV01_RS02100
location: 402765..403478
location: region:402765-403478:1
so has part: feature:402765-403478:1:exon

WP_200606305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:402765-403478:1:exon

HIV01_RS02105
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: nagZ
locus tag: HIV01_RS02105
old locus tag: HIV01_002105
so part of: sequence
location: 403594..404589
location: region:403594-404589:1
so has part: feature:403594-404589:1:exon
subclass of: SO_0000010

position:403594:1
position: 403594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:404589:1
position: 404589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:403594-404589:1:exon

HIV01_RS02105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: nagZ
locus tag: HIV01_RS02105
old locus tag: HIV01_002105
EC number: 3.2.1.52
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019336693.1
GO function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: beta-N-acetylhexosaminidase
translation: MLVIGVAGTELTAQERDWLQHDACAGVILFTRNFASRDQVAELSAAIRAAARRPQLVCVDQEGGRVQRFREGYSALPPLQGFGKLYADDREAALKLAEEHAWLMATEVQASGVDLSFAPVVDLGRGNLAIGNRAFSEDPAVVAEFTRAYVRGMHAAGMAATLKHFPGHGSVQADTHFDDAVDPRPLDELRATDLVPFVAGIDAKADAVMMAHVKYPAVAPEPAGYSKLWINDVLRSEMGFRGVVFSDDIGMKAAFSVGGVKARIDAHYDAGCDVVLVCHPQLVEESLEAVKGRTLNTMALTGLIGRGAMGWDGLLADSRYGSARSRLEGLA
SIO_010081: HIV01_RS02105
subclass of: SO_0000673
so part of: HIV01_RS02105
location: 403594..404589
location: region:403594-404589:1
so has part: feature:403594-404589:1:exon

WP_200604613.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:403594-404589:1:exon

HIV01_RS02110
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02110
old locus tag: HIV01_002110
so part of: sequence
location: 404589..405161
location: region:404589-405161:1
so has part: feature:404589-405161:1:exon
subclass of: SO_0000010

position:405161:1
position: 405161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:404589-405161:1:exon

HIV01_RS02110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02110
old locus tag: HIV01_002110
EC number: 2.4.2.8
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020851281.1
GO process: GO:0009116 - nucleoside metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypoxanthine-guanine phosphoribosyltransferase
translation: MSTTAAKSNDLAAALANSDLLIDRATLEQAIRDMAAPIRADYGDDDVPVYLTIMHGGLPFAAQLAMEVGALGLDLEFDYLHATRYRGATSGGELTWKHRPATPLQGRRVLLADDILDEGHTLAAIRAWCLEQGASDVRIAALAVKVHDRCVPGLHADYVGVEVPDRYVFGYGMDYHEQGRNLPAIYALKE
SIO_010081: HIV01_RS02110
subclass of: SO_0000673
so part of: HIV01_RS02110
location: 404589..405161
location: region:404589-405161:1
so has part: feature:404589-405161:1:exon

WP_200604614.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:404589-405161:1:exon

HIV01_RS02115
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02115
old locus tag: HIV01_002115
so part of: sequence
location: 405166..405930
location: region:405166-405930:1
so has part: feature:405166-405930:1:exon
subclass of: SO_0000010

position:405166:1
position: 405166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:405930:1
position: 405930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:405166-405930:1:exon

HIV01_RS02115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02115
old locus tag: HIV01_002115
EC number: 2.4.2.44
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011408258.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S-methyl-5'-thioinosine phosphorylase
translation: MSGIALAVIGGTGLYKLAALRDVETLQPTTRFGAPSGPIRLGTLDGHRVAFLARHGEGHSLPPHKINYRANLAALQSLGAQRVLALNTVGGIGERFGPCVLACPDQLIDYTWGRVSTICEDEGSEVLHVDFGEPYTRALRQDVIAAAAKAGVDLVAEGCYGATQGPRLETRAEIARMRRDGCDLVGMTGMPEAGLARELGLDYACLAIVANWAAGAGPDPDEVITLQDVLDNVAVASAGLPALLAALLDRSGRG
SIO_010081: HIV01_RS02115
subclass of: SO_0000673
so part of: HIV01_RS02115
location: 405166..405930
location: region:405166-405930:1
so has part: feature:405166-405930:1:exon

WP_200604615.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:405166-405930:1:exon

HIV01_RS02120
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02120
old locus tag: HIV01_002120
pseudo: true
so part of: sequence
location: 406028..406235
location: region:406028-406235:1
so has part: feature:406028-406235:1:exon
subclass of: SO_0000010

position:406028:1
position: 406028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:406235:1
position: 406235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:406028-406235:1:exon

HIV01_RS02120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02120
old locus tag: HIV01_002120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003488188.1
GO component: GO:0005829 - cytosol [Evidence IEA]
GO function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: cold-shock protein
SIO_010081: HIV01_RS02120
subclass of: SO_0000673
so part of: HIV01_RS02120
location: 406028..406235
location: region:406028-406235:1
so has part: feature:406028-406235:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:406028-406235:1:exon

HIV01_RS02125
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02125
old locus tag: HIV01_002125
pseudo: true
so part of: sequence
location: 406398..408042
location: region:406398-408042:1
so has part: feature:406398-408042:1:exon
subclass of: SO_0000010

position:406398:1
position: 406398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:408042:1
position: 408042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:406398-408042:1:exon

HIV01_RS02125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02125
old locus tag: HIV01_002125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019399359.1
GO function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: acyl-CoA dehydrogenase family protein
SIO_010081: HIV01_RS02125
subclass of: SO_0000673
so part of: HIV01_RS02125
location: 406398..408042
location: region:406398-408042:1
so has part: feature:406398-408042:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:406398-408042:1:exon

HIV01_RS02130
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02130
old locus tag: HIV01_002130
so part of: sequence
location: complement(408058..408501)
location: region:408058-408501:-1
so has part: feature:408058-408501:-1:exon
subclass of: SO_0000010

position:408058:-1
position: 408058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:408501:-1
position: 408501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:408058-408501:-1:exon

HIV01_RS02130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02130
old locus tag: HIV01_002130
EC number: 2.1.1.-
inference: COORDINATES: protein motif:HMM:NF023395.2
GO function: GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HIT family protein
translation: MTTTDCPFCAIAACQAPASIVFEDELTMAFIGLRQFHAGHTLVIPRRHMNDVRELDPATGAALMATVSLVTRAVGEAFPNKGLSLWHSIGEAAFQEVAHMHIHIHPRMPDDDFLRVYPAAPPTPDRATLDAHADVLRAQLRRIRDGR
SIO_010081: HIV01_RS02130
subclass of: SO_0000673
so part of: HIV01_RS02130
location: complement(408058..408501)
location: region:408058-408501:-1
so has part: feature:408058-408501:-1:exon

WP_200604616.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:408058-408501:-1:exon

HIV01_RS02135
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02135
old locus tag: HIV01_002135
so part of: sequence
location: complement(408545..408877)
location: region:408545-408877:-1
so has part: feature:408545-408877:-1:exon
subclass of: SO_0000010

position:408545:-1
position: 408545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:408877:-1
position: 408877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:408545-408877:-1:exon

HIV01_RS02135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02135
old locus tag: HIV01_002135
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRTTSDYSHVASLEIARALAQQGMLFEITLFPEEFGGNREAYNLIYVPPGIPEIMDLVTETLLSLRNEGLVDQLSMDVVYKGKSFVPGSISVRATHNSKSRTFEPRIGIW
SIO_010081: HIV01_RS02135
subclass of: SO_0000673
so part of: HIV01_RS02135
location: complement(408545..408877)
location: region:408545-408877:-1
so has part: feature:408545-408877:-1:exon

WP_200604617.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:408545-408877:-1:exon

HIV01_RS02140
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02140
old locus tag: HIV01_002140
pseudo: true
so part of: sequence
location: complement(409073..410842)
location: region:409073-410842:-1
so has part: feature:409073-410842:-1:exon
subclass of: SO_0000010

position:409073:-1
position: 409073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:410842:-1
position: 410842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:409073-410842:-1:exon

HIV01_RS02140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02140
old locus tag: HIV01_002140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019399358.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ABC transporter transmembrane domain-containing protein
SIO_010081: HIV01_RS02140
subclass of: SO_0000673
so part of: HIV01_RS02140
location: complement(409073..410842)
location: region:409073-410842:-1
so has part: feature:409073-410842:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:409073-410842:-1:exon

HIV01_RS02145
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02145
old locus tag: HIV01_002145
so part of: sequence
location: complement(410857..411456)
location: region:410857-411456:-1
so has part: feature:410857-411456:-1:exon
subclass of: SO_0000010

position:410857:-1
position: 410857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:411456:-1
position: 411456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410857-411456:-1:exon

HIV01_RS02145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02145
old locus tag: HIV01_002145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019661253.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YigZ family protein
translation: MTSATLAAPTSFELEVKHSRFIVHAAPVTTPQAALDFIAQVGDAAATHNCWAYRIGSEYRFNDDGEPAGTAGRPILAAIDGQGLDQVVAVVTRWYGGIKLGAGGLVRAYGGSAAECLRLAPRRILVVHVTVELDYSFDDTGTVHAAIAAHAAEKLDERFDANGAHLRLRLPSEQLSPLKVRLRDATRDRVRFGDELPDM
SIO_010081: HIV01_RS02145
subclass of: SO_0000673
so part of: HIV01_RS02145
location: complement(410857..411456)
location: region:410857-411456:-1
so has part: feature:410857-411456:-1:exon

WP_200604619.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:410857-411456:-1:exon

HIV01_RS02150
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02150
old locus tag: HIV01_002150
so part of: sequence
location: complement(411453..412499)
location: region:411453-412499:-1
so has part: feature:411453-412499:-1:exon
subclass of: SO_0000010

position:411453:-1
position: 411453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:412499:-1
position: 412499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:411453-412499:-1:exon

HIV01_RS02150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02150
old locus tag: HIV01_002150
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSHPFDEPLTPEERAMADRLARLGPRDGPSPALDAKILAAAHAAVAPRRHRRWLALTGVPATLVTGAGMAAVLALAVGVVWQLRPSAPAPRAPRDETGDFGFVTAEVIERPEPAAAPPPPPAADEPAPARALQAPAMAKREAAPERADAMAAKEAPAATAAPAPGQAHEHFLDEAINPATHSVPATAAAAARGDSMPYSAAPAPAAPAAAVFEGEPRQRAAASAMQRKATANEAAKQVDEDRELRSQAASVVAADRAAAASADAMAEEDTASGATLDRIEVTGSRITMADTPVRDDRELAPAQWLQRIRDRRDGGDLEGARQSLEQFRKSYPRVRLPDDLRALADPTR
SIO_010081: HIV01_RS02150
subclass of: SO_0000673
so part of: HIV01_RS02150
location: complement(411453..412499)
location: region:411453-412499:-1
so has part: feature:411453-412499:-1:exon

WP_200604620.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:411453-412499:-1:exon

HIV01_RS02155
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02155
old locus tag: HIV01_002155
so part of: sequence
location: complement(412503..413075)
location: region:412503-413075:-1
so has part: feature:412503-413075:-1:exon
subclass of: SO_0000010

position:412503:-1
position: 412503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:413075:-1
position: 413075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:412503-413075:-1:exon

HIV01_RS02155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02155
old locus tag: HIV01_002155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008435728.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO process: GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA polymerase sigma factor
translation: MNAGEDPSDDLLMLAWTGGDTAAFETLYARHRGPLYRFLLRQLRDGALADEFFQDVWQRVIAARQGWKPDAAFRTWLFRIAHNRLNDHWRGLKHRPAAPEDGDERAARVPDPTTPERELSEFEQRRRLQLAIAALPEEQREVVLLRLEQELSLEDIGEITGVGRETVKSRLRYAMDKLRAGLSDAGELSD
SIO_010081: HIV01_RS02155
subclass of: SO_0000673
so part of: HIV01_RS02155
location: complement(412503..413075)
location: region:412503-413075:-1
so has part: feature:412503-413075:-1:exon

WP_200606307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:412503-413075:-1:exon

HIV01_RS02160
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02160
old locus tag: HIV01_002160
so part of: sequence
location: 413251..416163
location: region:413251-416163:1
so has part: feature:413251-416163:1:exon
subclass of: SO_0000010

position:413251:1
position: 413251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:416163:1
position: 416163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:413251-416163:1:exon

HIV01_RS02160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02160
old locus tag: HIV01_002160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014161110.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EAL domain-containing protein
translation: MSNRSRPKAVRIVDAGYGRDSLADTLQEALPPGAEVAVLWRDPSTGISAGSASPGATSALASRAEVLLQRSPVGHHSHRIESAWTTAEGVRVAIAVQLPGAVAAEVREIWLTMAQRVVVSHLVALRTLARAESLEKSERLQQALFEIADLAGSDLELADMLRRIHTVVAGLMYAANLYIVLYDDVRDSLRFLYFADQVDTYVAEPERDIAIDDMPNSVTVALLRHGEPLQGPSELIRDRLGVARDARHGPDSEDWLGVPMRREDRICGAIVVQSYDRPDVYGEEERALLSFVAQHILTALDRFHAREELERRVEERTQALQLSNRDLQAEIIERQRAERLQRALFRIAELSITSETLERFYTQVHDVVSDLLYARNFYIALVSDDGQGLEFPYSIDERDANRVARKLASGLTEYVIARGRALLADRKRIAALESQGLVRSRGSLAHCWLGVPLFHNESVVGVITVQSYSPAINFSVRDQELLTFVAHHISIGLARKQAQDRLVSAHAELEQRVDSRTRELAQANTELLAQIGERLRVEQQLTHQAMHDALTGLPNRSQLLDRLAQAITRARSEQESTFAVLFLDLDRFKLVNDSVGHSAGDELLVEAGRRIVEAVREDDTVARLGGDEYAILIEDIDGPEVAEELAQRVLRALGEPCWIAGREVFPSASLGIALWHPRYRTGAELLRDADAAMYRAKAAGRDRCAVFDEAMREEAVRILDLEADLRRAINGDGFVAFYQPIVRLDDHRVIGHEALLRWRHERRGLLTPSEFIGVGEDSGLIEEVDWILYGQVMEELARGGEGYISVNVSPRHFRSGDFADRLLRMIDDAGADPHRLRIEITEVALLDDVPRALRMLRTLRSHGVLAQLDDFGTGFSALSYLHRFPIECLKIDQSFVSGLIGDAQPESVAVVRAIQALAGTLGIHTIGEGVETEAQRAALRELGCTYGQGYLFGYPAERIQPQALLRAVSG
SIO_010081: HIV01_RS02160
subclass of: SO_0000673
so part of: HIV01_RS02160
location: 413251..416163
location: region:413251-416163:1
so has part: feature:413251-416163:1:exon

WP_245156889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:413251-416163:1:exon

HIV01_RS02165
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02165
old locus tag: HIV01_002165
so part of: sequence
location: 416522..419545
location: region:416522-419545:1
so has part: feature:416522-419545:1:exon
subclass of: SO_0000010

position:416522:1
position: 416522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:419545:1
position: 419545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:416522-419545:1:exon

HIV01_RS02165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02165
old locus tag: HIV01_002165
inference: COORDINATES: protein motif:HMM:NF012801.2
GO function: GO:0015267 - channel activity [Evidence IEA]
GO process: GO:0015891 - siderophore transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TonB-dependent receptor
translation: MNRNLRRSALTVALGVCFASSGVHAQSTAGAVFGQATAGETVVVENPATGFRREITVTGDGTYRVPALSPGQYRITLQRADGTTAVREGVAVNVGTGTPVNFASAAGGSATTLDSVVVVGAQAVNPIDVSSVESTTILTAAQIAKIPVLRDATSVALLAPGTVRGDNAFGNLASFGGSSVAENQYYVNGFNVTNSFRGLNFSKIPFEAVAEQQIKTGGYGAEFGRSLGGVINQVTKRGTNEFEAGANVFWLPEGLREDVENTYYSNPLVPGDIGKLRQDNSKDSDGSYNTSVWAGGALIKDKLFAWGLLSYSNQEQDIYNSVVSRQNSTDKIDGPTWLLKVDWNINDSNKVEFTAFSDQQDTTSANYLNPLASLDRGALIGTSYLETGGENYIARYTGYLTDSFTLSALYGHSEFSRSRHLVTANGTRVEYGGDLHVPATGCPVITDVRPGYRTAITGVYASSCNITGTSIDRIDSGDTRDAWRIDGDWQIGDHQIGFGFDADDYESIAGQSIEGGRIWRYSTNNGPDGRANTGDEFDIVREQIVTQGSTVKVKQHAIYVEDNWNITDNFLAYIGARWDTFENLNGFGQTYVKIEDQFGPRLGFSWDVNGDSTLKLYGNAGRYALPLTPSVAVRGASASLFTRQNFRFAGVDPATGAPIGLNTPGALQYVNGEFGEPKNPATIAATNLDPMYQDEFILGFQKQITEHQSIGARGIYRKLKAAIDDNCDYNPIVEQAVADGFDPVLPGAGFPYCRMFNPGADSVFLTDLEDNGTLTEYTVQGDLLSPEAKRSYKSLELFWDGGWEKFFFQASYTLAWNKGNTEGGVKSDIGQADTSVTQDFDYKELAVDSYGYLPNDRRHSLKVFGNYQFNDEWSVGANVLVQSGRPINCLGVLYPYHGGIHPYGSSFFRCGTTEAGGRDGPAEAMPRGTAGRLPWTNSIDLNVAYFPSWATGLQFKMDIFNVFNNQKVTSVTEVAEDATTGAPLNTYLLPRTFQAPRQFRFMVQYDF
SIO_010081: HIV01_RS02165
subclass of: SO_0000673
so part of: HIV01_RS02165
location: 416522..419545
location: region:416522-419545:1
so has part: feature:416522-419545:1:exon

WP_200604622.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:416522-419545:1:exon

HIV01_RS02170
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02170
old locus tag: HIV01_002170
so part of: sequence
location: 419660..421258
location: region:419660-421258:1
so has part: feature:419660-421258:1:exon
subclass of: SO_0000010

position:419660:1
position: 419660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:421258:1
position: 421258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:419660-421258:1:exon

HIV01_RS02170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02170
old locus tag: HIV01_002170
EC number: 2.8.2.-
inference: COORDINATES: protein motif:HMM:NF012888.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfotransferase
translation: MKRSSDGGSMQAVLSEMWGQAQRLEAEGAWDRAGRVYEDMLAKEPHHVPAQLRMSRLAQFGDRYCAAREHALRAADAVRLKASTRNAGYVTGRLLEFAEEAEVASVILSADWSDPNILQQSAVLAQHLWLAGRYEDALRFLDAVARHVPAHPLLSFTRGNVLRFLGDMAGAEQAYEAALALSPGLADAHWALATHSRARVPMQRVPRIRQALSRSPAGGVEQAHLLYALFHEMDAAGEVDEAWQALEQGAAIMRRRLAYDASAEAAYLQALMRLPVPAAAEAVAAQALASSERPQPVFIVGMPRSGTTLLDRILGNHGWVDSLGERNDFQMALSQASDHFFHRTPASLERVAQVDARTAGHLFQQRMRLLAPGRPCVLDKNPQNLFNIPLILRALPHARILCLRRDPMDACFSNLKELFQGDAYAYSYGLDDLAAHSGHAQQWMQHWQDAAPHAVRVVDYEALVADPETVAAQLIEFIGLPAQAGLSDITRNDAPVSTASSSQVREGIHGRSLGAWKRYEQQLQPLRERMGG
SIO_010081: HIV01_RS02170
subclass of: SO_0000673
so part of: HIV01_RS02170
location: 419660..421258
location: region:419660-421258:1
so has part: feature:419660-421258:1:exon

WP_207527055.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:419660-421258:1:exon

HIV01_RS18060
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS18060
pseudo: true
so part of: sequence
location: 421977..>422669
location: region:421977-422669:1
so has part: feature:421977-422669:1:exon
subclass of: SO_0000010

position:421977:1
position: 421977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:422669:1
position: 422669
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:421977-422669:1:exon

HIV01_RS18060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS18060
inference: COORDINATES: protein motif:HMM:NF012888.2
GO function: GO:0050656 - 3'-phosphoadenosine 5'-phosphosulfate binding [Evidence IEA]; GO:0008146 - sulfotransferase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: sulfotransferase
SIO_010081: HIV01_RS18060
subclass of: SO_0000673
so part of: HIV01_RS18060
location: 421977..>422669
location: region:421977-422669:1
so has part: feature:421977-422669:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:421977-422669:1:exon

HIV01_RS18065
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS18065
so part of: sequence
location: complement(422882..423244)
location: region:422882-423244:-1
so has part: feature:422882-423244:-1:exon
subclass of: SO_0000010

position:422882:-1
position: 422882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:423244:-1
position: 423244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:422882-423244:-1:exon

HIV01_RS18065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS18065
inference: COORDINATES: protein motif:HMM:NF023459.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3520 domain-containing protein
translation: MARRRKPRRRTLGGEIAHLRLRYKLPGQDRSRLIETPVLASQVTRSPSESLRLASAVAGFADALRGGSRMDGWSLDAMIQSATAAKGRDPNGERAELVALMKLAQAQIDPNQETRIGLGR
SIO_010081: HIV01_RS18065
subclass of: SO_0000673
so part of: HIV01_RS18065
location: complement(422882..423244)
location: region:422882-423244:-1
so has part: feature:422882-423244:-1:exon

WP_245156959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:422882-423244:-1:exon

HIV01_RS18070
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS18070
pseudo: true
so part of: sequence
location: complement(<423279..424349)
location: region:423279-424349:-1
so has part: feature:423279-424349:-1:exon
subclass of: SO_0000010

position:423279:-1
position: 423279
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:424349:-1
position: 424349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:423279-424349:-1:exon

HIV01_RS18070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS18070
inference: COORDINATES: protein motif:HMM:NF012321.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: von Willebrand factor type A domain-containing protein
SIO_010081: HIV01_RS18070
subclass of: SO_0000673
so part of: HIV01_RS18070
location: complement(<423279..424349)
location: region:423279-424349:-1
so has part: feature:423279-424349:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:423279-424349:-1:exon

HIV01_RS02180
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02180
old locus tag: HIV01_002180
so part of: sequence
location: 425025..425690
location: region:425025-425690:1
so has part: feature:425025-425690:1:exon
subclass of: SO_0000010

position:425025:1
position: 425025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:425690:1
position: 425690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:425025-425690:1:exon

HIV01_RS02180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02180
old locus tag: HIV01_002180
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSPLKHALPRRALAAAVFLAASSTAVAGSPHLIYLPSTEAGVDHAAIVQAFEDQGFEVSTFAYAGEKRLAYAHRIADEVRGLMAKGVAPEEINVVGAGTGSKVATLTSALVGNGHVNYALLGQCDPQMKANYNFRMSGRVLGIHDANDSTSLSCRSLWGDSPKVSERQELVLNSGHGAALFHEPRKEWLQPVTEWATGGEVSVGETSIGRVDEPAPSPRK
SIO_010081: HIV01_RS02180
subclass of: SO_0000673
so part of: HIV01_RS02180
location: 425025..425690
location: region:425025-425690:1
so has part: feature:425025-425690:1:exon

WP_200604626.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:425025-425690:1:exon

HIV01_RS02185
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02185
old locus tag: HIV01_002185
so part of: sequence
location: complement(425780..427243)
location: region:425780-427243:-1
so has part: feature:425780-427243:-1:exon
subclass of: SO_0000010

position:425780:-1
position: 425780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:427243:-1
position: 427243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:425780-427243:-1:exon

HIV01_RS02185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02185
old locus tag: HIV01_002185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015447966.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aldehyde dehydrogenase family protein
translation: MAKPKRAASGLMASYPYYLANRPVAANTDLDVLDKYSGKRATRVALADATAVRKAIVAAHQARGAVAAFPPDARRDVLEHCVMRFQERFDELALALCIEAGKPIADARGEVTRLIDTFRIAAGEATRIDGEVIELQISKRTRGYRGMVKRVPIGVCSFITPFNFPLNLVAHKVAPALAAGCPFVLKPSEKTPIGALIIAEILAETDLPRGAFSVLACSTQDAAQLVEDERIALLSFTGGLIGWDLKARAGRKKVTLELGGNAACIIDDDPGMPLDRVVERLVFGAYYQSGQSCISVQRIYAHAAIYDKLRKKLKAAVAKLPMGDPRDEKTFIGPMIDEAAAKRVDSWIEAARKGGAKRLAGGNRSGNMVPATLLEGVPHDSDLYRKEAFAPVALMEPFDDFEQAIDQVNDSDFGLQAGVFTARLDHAMRAWDRLDVGGVIVGDVPSFRVDNMPYGGVKHSGLGREGVRYAIEDMTEQRLLVIRDATG
SIO_010081: HIV01_RS02185
subclass of: SO_0000673
so part of: HIV01_RS02185
location: complement(425780..427243)
location: region:425780-427243:-1
so has part: feature:425780-427243:-1:exon

WP_245156890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:425780-427243:-1:exon

HIV01_RS02190
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02190
old locus tag: HIV01_002190
so part of: sequence
location: complement(427278..428924)
location: region:427278-428924:-1
so has part: feature:427278-428924:-1:exon
subclass of: SO_0000010

position:427278:-1
position: 427278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:428924:-1
position: 428924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:427278-428924:-1:exon

HIV01_RS02190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02190
old locus tag: HIV01_002190
EC number: 2.2.1.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019465965.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acetolactate synthase large subunit
translation: MTKASDLFVAALEAEGVEYVFGIPGEENLDLLESLRTSRIRLVLTRHEQGAGFMAATYGRLTGKAGVCLSTLGPGATNLVTPAAYAQLGAMPMLMITGQKPIKTSRQGHFQIVDVVDTMRPLTKYTRQIVSADAIPARVREAFRRAEEERPGATHLELPQDIAGDDTSARVIPASFSRRPIADDKAIAHAAAAISQSRHPLLMIGAGANRKTTAHQLRSFIDKLGIPFFTTQMGKGVIDELHPLWLGNAALSDHDFVHRAIDAADCIVNIGHDVIEKPPFFMREGRRTVIHVNYESAEVDAVYFPQIEVVGDIANTVWQLGEVLTAQPHWDFGFFDRVRAALLANLVDRSDADRFPMAPQRLVADVRKVMGARDVVCLDNGLYKLWFARCYRCREPNTLLLDNALATMGAGLPSAIAARIVCPDRRVIAVCGDGGFMMNSQELETAVRLGLDITVLVLRDDAYGMIKWKQAHEDYPSFGMDLGNPDFVRYAQSYGARGHRPASADEFAPMLQRALDTPGIDLIEVPIDYSDDDRLLNEEIPKLSAALR
SIO_010081: HIV01_RS02190
subclass of: SO_0000673
so part of: HIV01_RS02190
location: complement(427278..428924)
location: region:427278-428924:-1
so has part: feature:427278-428924:-1:exon

WP_200604627.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:427278-428924:-1:exon

HIV01_RS02195
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: xseA
locus tag: HIV01_RS02195
old locus tag: HIV01_002195
so part of: sequence
location: complement(428991..430361)
location: region:428991-430361:-1
so has part: feature:428991-430361:-1:exon
subclass of: SO_0000010

position:428991:-1
position: 428991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:430361:-1
position: 430361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:428991-430361:-1:exon

HIV01_RS02195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: xseA
locus tag: HIV01_RS02195
old locus tag: HIV01_002195
EC number: 3.1.11.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005994364.1
GO component: GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO function: GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO process: GO:0006308 - DNA catabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: exodeoxyribonuclease VII large subunit
translation: MNDYPTEPTSGAGRSDQVLTPSQLNTLARDLLEGAFPQVWIEGELGNVSKPSSGHLYFTLKDARAQVRCAMFRPKSSWLKFVPREGLRVLGRGRLTLYEARGEYQLVFDHLEEAGEGALRRAFEELRARLAAEGLFDVERKRALPRFARRIGVITSPSGAAVRDVLSVLARRFPLVEADVLPVQVQGEGAAAQIVAMLQRAIASARYDVLVLARGGGSLEDLWAFNDERLARTIAASPVPIVSAVGHETDFSLSDFAADVRAPTPSVAAELLAPNREDLLHRLRILESRLRNLHTQRLRQAMQRADRAALRLNAVRPQARLEALGRRQREALRRLNAAWRQQLERERARLRHADAVLRAAHPQRRIARLRERLAALRPRPQAAIVRRLAKDAMHLRGLARSLEAVSPLATVARGYSILQHPDGRVVRSVLDAAPGDRLAARLSDGQLQVRVEPKDD
SIO_010081: HIV01_RS02195
subclass of: SO_0000673
so part of: HIV01_RS02195
location: complement(428991..430361)
location: region:428991-430361:-1
so has part: feature:428991-430361:-1:exon

WP_200604628.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:428991-430361:-1:exon

HIV01_RS02200
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
alternative label: gcpE
gene: ispG
locus tag: HIV01_RS02200
old locus tag: HIV01_002200
gene synonym: gcpE
so part of: sequence
location: 430431..431711
location: region:430431-431711:1
so has part: feature:430431-431711:1:exon
subclass of: SO_0000010

position:430431:1
position: 430431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:431711:1
position: 431711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:430431-431711:1:exon

HIV01_RS02200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
alternative label: gcpE
gene: ispG
locus tag: HIV01_RS02200
old locus tag: HIV01_002200
gene synonym: gcpE
EC number: 1.17.7.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019400007.1
GO function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [Evidence IEA]
GO process: GO:0044237 - cellular metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
translation: MNSHASAPCAHPGFGPLPRRLTRTVRIGGVEVGGGQPVVVQSMTNTDTADVASTTKQVAELWRAGSEMVRVTVNTVDAAAAVPRIVDKLAMMGVEVPIIGDFHYNGHQLLTAEPACAEVLAKYRINPGNVGFGKKKDSQFATLIELAIRHGKPVRIGANWGSLDQSLAAQLMDENHKLAEPREAAEVLREALIRSALDSAARAVELGLSADRIILSAKVSGVQELIAVYREMARRSDFALHLGLTEAGIGSKGIVASSAALAVLLQEGIGDTIRISLTPEPGQSRTNEVIVAQELLQTMGLRAFTPMVTACPGCGRTTSTFFQELAQRVQEHVRAKMPVWKISHPGAENLTLAVMGCVVNGPGESRHANIGISLPGTGEAPSAPVFEDGEKTVTLRGENIAHEFVELIDRYVERKYGAADDAARAG
SIO_010081: HIV01_RS02200
subclass of: SO_0000673
so part of: HIV01_RS02200
location: 430431..431711
location: region:430431-431711:1
so has part: feature:430431-431711:1:exon

WP_200604629.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:430431-431711:1:exon

HIV01_RS02205
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02205
old locus tag: HIV01_002205
so part of: sequence
location: 431737..432390
location: region:431737-432390:1
so has part: feature:431737-432390:1:exon
subclass of: SO_0000010

position:431737:1
position: 431737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:432390:1
position: 432390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:431737-432390:1:exon

HIV01_RS02205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02205
old locus tag: HIV01_002205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003475219.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphatase PAP2 family protein
translation: MRYGAGVLRQYGGRLLLVFIGLLLPLWGFAELADEIHEQEAIVFDEPILHFAHDLARDGFDRFFVLISRIGYLWGVVPFDIALVLVLTLLRRYREATFAAIALGGSALLNIAAKAVFARERPSLWDSIAPEHNFSFPSGHAMGSMTLAWVLVLLAWRTRWRWPMVALMLPFVVLVGLSRVYLGVHYPSDILAGWAAASVWTVAVYLLVYWGGLRPWR
SIO_010081: HIV01_RS02205
subclass of: SO_0000673
so part of: HIV01_RS02205
location: 431737..432390
location: region:431737-432390:1
so has part: feature:431737-432390:1:exon

WP_200606309.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:431737-432390:1:exon

HIV01_RS02210
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02210
old locus tag: HIV01_002210
so part of: sequence
location: complement(432392..433279)
location: region:432392-433279:-1
so has part: feature:432392-433279:-1:exon
subclass of: SO_0000010

position:432392:-1
position: 432392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:433279:-1
position: 433279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:432392-433279:-1:exon

HIV01_RS02210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02210
old locus tag: HIV01_002210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014646917.1
GO function: GO:0005215 - transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DMT family transporter
translation: MRAAGFMLASTLCFGAMAITIRLASATLHTFEIAFFRNLFGLMAVLPLIAGVDRASLRTRQLPRYFVRCAIGIGSMLAGFWAIGHLPLAQAISLSYSTPVFVTIAAAIFLGEHVRARRWAAVAIGFIGVLVIVRPGSAEFSTGTLIALLAAVLSGVVAIQIKQLSRVDAANTIVLYTYLFWVPMSLLPALWVWEWPQGIAWLWVIGAGIFGTGGQVLWTHALKLGEVSALTPISFMQLPLVATAGWLWFGESVDGWTWVGAAIILSANAYIAHREAVLMRRAATAAPTSAAVPGE
SIO_010081: HIV01_RS02210
subclass of: SO_0000673
so part of: HIV01_RS02210
location: complement(432392..433279)
location: region:432392-433279:-1
so has part: feature:432392-433279:-1:exon

WP_200606310.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:432392-433279:-1:exon

HIV01_RS02215
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: murB
locus tag: HIV01_RS02215
old locus tag: HIV01_002215
so part of: sequence
location: complement(433306..434343)
location: region:433306-434343:-1
so has part: feature:433306-434343:-1:exon
subclass of: SO_0000010

position:433306:-1
position: 433306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:434343:-1
position: 434343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:433306-434343:-1:exon

HIV01_RS02215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: murB
locus tag: HIV01_RS02215
old locus tag: HIV01_002215
EC number: 1.3.1.98
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003469571.1
GO function: GO:0071949 - FAD binding [Evidence IEA]; GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UDP-N-acetylmuramate dehydrogenase
translation: MSEAVRILRDAPLDHRNTFGVAARAHSLAELGDASALPELFTRTEFRERPPLVLGGGSNLLFAGNPEAAVLALTGEDVRVLHDDGVAIVRADAGVQWHGFVMHTLEMGLAGLENLALIPGTVGAAPIQNIGAYGVEVRDFIHTVEAFEPGTGQFHLLDADACAFAYRDSVFKHEPDRYIVTAVEFALPRTPSLKLDYAGIGDEIVAMGITAPTPRDVADAVIAIRRRKLPDPAVLGNAGSFFKNPIVALAQAEALQAQYPAMPVFRGNDAATRKLSAAWFIDACGWKGHRDGDAGVAATHALVLVNHGHASGQQLLDLARRIADSVRARFDVAIEPEPRVIGAAW
SIO_010081: HIV01_RS02215
subclass of: SO_0000673
so part of: HIV01_RS02215
location: complement(433306..434343)
location: region:433306-434343:-1
so has part: feature:433306-434343:-1:exon

WP_207527056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:433306-434343:-1:exon

HIV01_RS02220
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02220
old locus tag: HIV01_002220
so part of: sequence
location: complement(434340..435398)
location: region:434340-435398:-1
so has part: feature:434340-435398:-1:exon
subclass of: SO_0000010

position:434340:-1
position: 434340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:435398:-1
position: 435398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:434340-435398:-1:exon

HIV01_RS02220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02220
old locus tag: HIV01_002220
EC number: 1.3.5.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014090028.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO process: GO:0006222 - UMP biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: quinone-dependent dihydroorotate dehydrogenase
translation: MYSIVRPFLFGLDAETAHGATLAAMEAAYRSGLSPLLGRRPAPLPTRAFGLTFPNPVGLAAGLDKNGAHIDALLALGFGFVEVGTVTPRAQEGNPKPRMFRLPDQQAVINRLGFNNGGVDELVRNVGKARRRGGLLGINIGKNKDTPNESAETDYLHCLERVYPLADYVTVNISSPNTAGLRELQEEQSLRRLVSILREAQERLGALHGKRVPMLVKIAPDLSDDDVQAAARVLGDLNVDGVIATNTTVSRIGIDGAPHASETGGLSGRPLMGEATAVLRMMRTRLPESIPMIGVGGILSGADAATKMAAGATLVQCYTGLVYRGPALVHECVEAMRRRKEAPSRGNMPPIV
SIO_010081: HIV01_RS02220
subclass of: SO_0000673
so part of: HIV01_RS02220
location: complement(434340..435398)
location: region:434340-435398:-1
so has part: feature:434340-435398:-1:exon

WP_207527057.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:434340-435398:-1:exon

HIV01_RS02225
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02225
old locus tag: HIV01_002225
so part of: sequence
location: complement(435400..435702)
location: region:435400-435702:-1
so has part: feature:435400-435702:-1:exon
subclass of: SO_0000010

position:435400:-1
position: 435400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:435702:-1
position: 435702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:435400-435702:-1:exon

HIV01_RS02225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02225
old locus tag: HIV01_002225
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017913403.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4190 domain-containing protein
translation: MQAVVRRDNSTLAIVSLVFGVLGWTALPIVASLVAIVTGHLAKAELRRTPEREGKVLAVIGLVLGWSSLLVIVSVVTFLLIWTGLIFSDGVREITLPRAH
SIO_010081: HIV01_RS02225
subclass of: SO_0000673
so part of: HIV01_RS02225
location: complement(435400..435702)
location: region:435400-435702:-1
so has part: feature:435400-435702:-1:exon

WP_200604632.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:435400-435702:-1:exon

HIV01_RS02230
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02230
old locus tag: HIV01_002230
so part of: sequence
location: complement(435735..437267)
location: region:435735-437267:-1
so has part: feature:435735-437267:-1:exon
subclass of: SO_0000010

position:435735:-1
position: 435735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:437267:-1
position: 437267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:435735-437267:-1:exon

HIV01_RS02230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02230
old locus tag: HIV01_002230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014507550.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aldehyde dehydrogenase family protein
translation: MTHPVLTALGLTDTESGTYLGSGEWSPTRDAGVLESINPTNGEVLAKVEASSQADYDAIVERAQAAFKVWRTTPAPRRGEAVRLCADALRKHKDALGSLVALEMGKSKPEGDGEVQEMIDIGDFAVGLSRQLYGLTMHSERPGHRMYEQWHPIGIVGVISAFNFPVAVWAWNSFIAAICGNITLWKPSPKTPLSAVASMKICNAALKAGGFPDIFFLFNDAGTELASSFVDDKRIGLISFTGSTKVGRIVGERVARRMGRSLLELGGNNAIIVDPSADLKLAIPAIAFGAVGTAGQRCTTTRRLFVQESIYDDVLAKLITAYKQVEKKIGDPTDPNNLMGPLNSRDAVQAYLDAVEKAKASGGKVETGGAAIDGPGNFVLPTIVTGLTNDAEVVQTETFAPILYVMKYGQLDEAIELQNDVPQGLSSSIFTQNLKAAEAFLAASGSDCGIANVNIGTSGAEIGGAFGGEKETGGGRESGSDAWRAYMRRQTNTINYSDALPLAQGIKFDL
SIO_010081: HIV01_RS02230
subclass of: SO_0000673
so part of: HIV01_RS02230
location: complement(435735..437267)
location: region:435735-437267:-1
so has part: feature:435735-437267:-1:exon

WP_207527058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:435735-437267:-1:exon

HIV01_RS02235
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02235
old locus tag: HIV01_002235
so part of: sequence
location: complement(437350..437426)
location: region:437350-437426:-1
so has part: feature:437350-437426:-1:exon
subclass of: SO_0000663

position:437350:-1
position: 437350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:437426:-1
position: 437426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:437350-437426:-1:exon

HIV01_RS02235
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS02235
old locus tag: HIV01_002235
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(437390..437392),aa:Arg,seq:cct)
SIO_010081: HIV01_RS02235
subclass of: SO_0000673
so part of: HIV01_RS02235
location: complement(437350..437426)
location: region:437350-437426:-1
so has part: feature:437350-437426:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:437350-437426:-1:exon

HIV01_RS02240
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02240
old locus tag: HIV01_002240
so part of: sequence
location: complement(437562..438821)
location: region:437562-438821:-1
so has part: feature:437562-438821:-1:exon
subclass of: SO_0000010

position:437562:-1
position: 437562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:438821:-1
position: 438821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:437562-438821:-1:exon

HIV01_RS02240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02240
old locus tag: HIV01_002240
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007509636.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dicarboxylate/amino acid:cation symporter
translation: MSTTARVLLGLFLGALIGLLLAWWDVAAATRVADFIQPIGRLWLNALQMTVVPLVAALVVIGVNTATDAAASGRTARKAIITFVIILSVCAAFAAIVAPLLFSLVPRQEGLAESLRAATAGTAQLSLPNSLGDWFVGIIPSNAIAAAAQSAMMPLVVFALFFGFALTRIETGRRARLLELVQSIADVMVVIVRWVLWAAPVGVFALVLAVCARVGHGMIGAFGWYIAILSAMYLCATALMYPIAVLAGSERVRRFAAAIVPAQAVAASTQSSLASLPAMIESSRVRLGHPLSVTSLVLPMAVSLFRITSPMQYIGVASFVAWAYGIDLSATQMAAGAALAVVISMGSVGLPGQVSFMATNMPVTQAMGLPVEPLGLLLALDTIPDVFATLGNVTGDLTATAVVAKGQTEPEAAAETSPL
SIO_010081: HIV01_RS02240
subclass of: SO_0000673
so part of: HIV01_RS02240
location: complement(437562..438821)
location: region:437562-438821:-1
so has part: feature:437562-438821:-1:exon

WP_200604634.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:437562-438821:-1:exon

HIV01_RS02245
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02245
old locus tag: HIV01_002245
so part of: sequence
location: complement(439017..439709)
location: region:439017-439709:-1
so has part: feature:439017-439709:-1:exon
subclass of: SO_0000010

position:439017:-1
position: 439017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:439709:-1
position: 439709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:439017-439709:-1:exon

HIV01_RS02245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02245
old locus tag: HIV01_002245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008435127.1
GO function: GO:0016740 - transferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: L,D-transpeptidase family protein
translation: MKSRQPTQPWDDAQQMVVVTTADWTANTGTLQRYERDGSGWRALGEAAPITVGRSGSGWGVGLHAPQSGEPQKVEGDGRAPAGVFRIGTAFGYADSAAGAWPYQAMTASDFCIDVNASPLYNRIVDARQVGADAVAGSTEPMRRDLHAGGDQRYKLGFVIEHNPDNRSGTGSCIFAHLWKAPGETTAGCTAMAEPVMQQLLAWLDPKRKPVFVLLPVAEYGRVRKDWRLP
SIO_010081: HIV01_RS02245
subclass of: SO_0000673
so part of: HIV01_RS02245
location: complement(439017..439709)
location: region:439017-439709:-1
so has part: feature:439017-439709:-1:exon

WP_245156960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:439017-439709:-1:exon

HIV01_RS02250
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02250
old locus tag: HIV01_002250
so part of: sequence
location: complement(439789..440637)
location: region:439789-440637:-1
so has part: feature:439789-440637:-1:exon
subclass of: SO_0000010

position:439789:-1
position: 439789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:440637:-1
position: 440637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:439789-440637:-1:exon

HIV01_RS02250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02250
old locus tag: HIV01_002250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008265670.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MurR/RpiR family transcriptional regulator
translation: MSPLLKIRSERDQMSAIERRIADFLLDNAHLLRDYSSQQLANALGISQSSVVKFSQKLGFKGYPDLKYSIGQAVARGDGGDEHVASEVRNDDPHAALAEDLWHLKAQAEAATRLINPPERIDAIAAAIQQAGKVFIIGLGEDGIPARAFATRLSMLGILTVHYVDAILMQAGVSSAAPGDVLLVFSEHGRQPALCQISRLFRERFGKVISVSRHTPNPLRAHADAALLVSAHDERRHIEPLLYQCALQHLLDLIFILLCDGNDDRRSQLDFNFERMQDLLDS
SIO_010081: HIV01_RS02250
subclass of: SO_0000673
so part of: HIV01_RS02250
location: complement(439789..440637)
location: region:439789-440637:-1
so has part: feature:439789-440637:-1:exon

WP_200604635.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:439789-440637:-1:exon

HIV01_RS02255
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02255
old locus tag: HIV01_002255
so part of: sequence
location: complement(440670..441767)
location: region:440670-441767:-1
so has part: feature:440670-441767:-1:exon
subclass of: SO_0000010

position:440670:-1
position: 440670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:441767:-1
position: 441767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:440670-441767:-1:exon

HIV01_RS02255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02255
old locus tag: HIV01_002255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007509642.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dipeptide epimerase
translation: MKITDIRFGMLRVPLKTPFKTALRTVEAVEDIVVSVHTDTGQVGYGEAPATAVITGDTHGSIIEAIRKFIAPRVIGQEIANLNHITALIQSALEKNTSAKAAVEIAVYDLFGQLYGVPLYKMLGGGDPVITTDITISVDYIDKMVADSISAVDRGFESLKIKVGKDIGVDIERVKAIYAAVEGRALLRLDANQGWSAKQAVYAISMLEDAGVRLELVEQPVKAKDLDGMKYVTERVHTPIMADESVFGPTEVIDLIRMRAADIINIKLMKTGGLSNAIRIADIAELYGVECMIGCMLESSISVAAAVHLAVAKSSAITKVDLDGPSLCAFNPVDGGVNFNESEISVTDAPGLGIREIRGLVPIEA
SIO_010081: HIV01_RS02255
subclass of: SO_0000673
so part of: HIV01_RS02255
location: complement(440670..441767)
location: region:440670-441767:-1
so has part: feature:440670-441767:-1:exon

WP_200604636.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:440670-441767:-1:exon

HIV01_RS02260
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02260
old locus tag: HIV01_002260
so part of: sequence
location: complement(441825..443243)
location: region:441825-443243:-1
so has part: feature:441825-443243:-1:exon
subclass of: SO_0000010

position:441825:-1
position: 441825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:443243:-1
position: 443243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441825-443243:-1:exon

HIV01_RS02260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02260
old locus tag: HIV01_002260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007081224.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SH3 domain-containing protein
translation: MRLTLTTPALALSLALCLAGTALQPLAARERAWTVPASTGVIGVDHAQLDPAFWVRQLADPDRVILDSDAIAAQNTRLHQLDKSIHDLAALQDTLDRAQVSGWIEALSRRPSKALFDERGKPVAKATLDEVVDSINLGAVPERQDTRYGLVVHRAALRTFPTSLRVFSSDDDHDIDRFQESALFPGDPVVVAHESRDGQWWFVVNPRYAAWVEKRFVALGSQEQVLGYGRKAPYRVVTGARAATVFTQEEPGVSELQLDMGLRVPVLADWPVGKAVNGQDGYTSHVIELPVRNDDGSLRFAPALLPRREPSQDHYLPLSGRNLIEQGFKFLGERYGWGHSYNGRDCSGFVSEIYRSMGVELPRNTSDQAVSPALNRIALSDKDSRERRLQIARELQVGDLVYIPGHVMMVIGQLDGEPYVIHDTTGLSFAGADGKTVRAKTNGVTVSPLTPLLFNGKQTYVDRMTNIQRIRP
SIO_010081: HIV01_RS02260
subclass of: SO_0000673
so part of: HIV01_RS02260
location: complement(441825..443243)
location: region:441825-443243:-1
so has part: feature:441825-443243:-1:exon

WP_200604637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:441825-443243:-1:exon

HIV01_RS02265
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02265
old locus tag: HIV01_002265
so part of: sequence
location: complement(443284..444450)
location: region:443284-444450:-1
so has part: feature:443284-444450:-1:exon
subclass of: SO_0000010

position:443284:-1
position: 443284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:444450:-1
position: 444450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:443284-444450:-1:exon

HIV01_RS02265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02265
old locus tag: HIV01_002265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019465844.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF819 family protein
translation: MIETVWPYAAVLLVSAGLFPSLEKRYGWRLFSVLPPIVLTYLFVTALAVAGLWRATPEIAAAQHSLTGQLLPALLFLLMVGCDLRAIVKLGPRMLAVFACAMLSILAAIVIAYLIFRNALPADGWKMLAALSATWTGGSANLVAVKQSIGLPDNLLPSVLLADAVCYSVWVIVLFSINRFAPAFNHWTGADARAPLPQVEPRTTGEAGPGSVLLWLGLALLVGNLSSWLAALLPVGGFLTTTAWTVLIATVVGLVLARTALAHSPVPAPLASAMLACLVAVLASQSNFQGLDTAPLFVVVGFTVLIVHVALLLLAAKLFRFDLHLCGISSLAQIGGMATAPVLAATYARALVPVAVLLAMLGLVLGTGIGLAMAGILSGMAPVASIAS
SIO_010081: HIV01_RS02265
subclass of: SO_0000673
so part of: HIV01_RS02265
location: complement(443284..444450)
location: region:443284-444450:-1
so has part: feature:443284-444450:-1:exon

WP_200604638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:443284-444450:-1:exon

HIV01_RS02270
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02270
old locus tag: HIV01_002270
so part of: sequence
location: 444694..446124
location: region:444694-446124:1
so has part: feature:444694-446124:1:exon
subclass of: SO_0000010

position:444694:1
position: 444694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:446124:1
position: 446124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:444694-446124:1:exon

HIV01_RS02270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02270
old locus tag: HIV01_002270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019465843.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transglutaminase-like domain-containing protein
translation: MTTAALAGGAGDTVDEVTASIDAGHFKQANSAIDSALAQPGLSADARQALQFQRERMRRIRLDFPITEPEAKAKLRELIPDMTDAEFAGWKASNQLEHMVIDGVPYYFSRSVSNLFRVSPEATARRATPATRNDGPMESANAYHDEALAQARATGKSSVAPRRVRVTQAIIVNADAVPAGEVVRAWIPFPRAIAGQQENIELISSAPARHVTAPESTMQRTVYMEQPAVKATPTKFSVTYELTIFGQVHQIDPAKVVTAGNSPADNSAELAPYLEERPPHIVFSDDIRAFSKKVVGDEKNPYRIAQKLYSAVDSIPWGGAREYSTITNISHYALHSDHADCGQQTLLLMTLLRLNGIPARWQSGMVYSDGKYDNLHDWGFMYLAPYGWVPMDVTTGQFKGASDPGVEWYYLGGLDAYRIAFNDDYGTDLVPRKQHFRSETVDSQRGEVEWQGGNLYFDQWDYQFEAKVMPLETAAR
SIO_010081: HIV01_RS02270
subclass of: SO_0000673
so part of: HIV01_RS02270
location: 444694..446124
location: region:444694-446124:1
so has part: feature:444694-446124:1:exon

WP_200604639.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:444694-446124:1:exon

HIV01_RS02275
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02275
old locus tag: HIV01_002275
so part of: sequence
location: 446190..449189
location: region:446190-449189:1
so has part: feature:446190-449189:1:exon
subclass of: SO_0000010

position:446190:1
position: 446190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:449189:1
position: 449189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:446190-449189:1:exon

HIV01_RS02275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02275
old locus tag: HIV01_002275
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014645718.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TonB-dependent receptor
translation: MNGKALRRATLSMALGACIATMVPMLASAQTVSGAVAGNATQGDQITVTNTETGLSRTTTADAKGNYRIAQLPIGNYSLQVMRDGQAIGQAVEVTVSMGSSTNINLGGDGAVNLASVQVVGSRVVPLVDVTSTESAMTLTAADVDRLPVDRDLASVALLAPGVTKGESSFGGISFGGSSVAENSFYINGLNVTDFYNRNGFSEAPFAFYKEFQVKTGGYSVEFGRTTGGVINTVAKSGTNEFESGAELVFEPRAWQSKANDRYFNGERYLTFSQDDYSDTTLDLWASGPLIKDRLFFFALYELRDYEPTNTNDEGTNLTKNNSSNGFWGGTLDWYVTDNNILSLMAFSNKNENTGDVYTYDYDNNEIGNKTNEIYNDTGGDNWALSWSSYFTSNFSMKVMYGENHRQSFNRSLLDLECNRVQTVSSRPAPPGVQLGCSTNSTVFNREDVREQTRADFEWSLGDHLLRFGVDHEVNTSDHKQYYAGPGALFYNVNAGSPGSSIPNPPGGVIPPGYTGYVRARRNEIAGNFESTNTAFYLEDNWSITDNFLLNLGIRNESFDNKDGDGKSYIEMDEMWAPRLGFAWDINGDSTMKLFGNVGRYFLPVANVINIKQAGGLLDQRTYYAFDGWDVRSLNGVQYAVPRLGPQIGTVDVSQGDGTVGDLRSEVDRDLDSVYQDEAILGFQQMLNEKWSWGVRGIYRKLTNAIDDMEISATGQCGEDGYIGWVMANPGEKVTVWGDTDCNGNMGWVTVDTAKEGWALYDEDGNYQGQRGWVKPKRTYKALEFQLDRAWDDKWALNMSYTWSKSEGNAEGPVNSDTNFSDTGRTENFDDPWVNYGGYGPLANDRRHQLKARGTYAFNDNWQVGGTLDASSGGPITGFGTGNPFDAAKYHSYYICVAQCDSATPVYEHSARGAYGEMPWTWEVGASVTYLQSFGDSRLRVKFAVFNLFNQQKTVRVDQELQPSVGMATPTEPELNEFFGVGYGFQAPRYAQLSVTVDF
SIO_010081: HIV01_RS02275
subclass of: SO_0000673
so part of: HIV01_RS02275
location: 446190..449189
location: region:446190-449189:1
so has part: feature:446190-449189:1:exon

WP_200604640.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:446190-449189:1:exon

HIV01_RS02280
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: lysA
locus tag: HIV01_RS02280
old locus tag: HIV01_002280
so part of: sequence
location: 449249..450571
location: region:449249-450571:1
so has part: feature:449249-450571:1:exon
subclass of: SO_0000010

position:449249:1
position: 449249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:450571:1
position: 450571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:449249-450571:1:exon

HIV01_RS02280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: lysA
locus tag: HIV01_RS02280
old locus tag: HIV01_002280
EC number: 4.1.1.20
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007807333.1
GO function: GO:0008836 - diaminopimelate decarboxylase activity [Evidence IEA]
GO process: GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: diaminopimelate decarboxylase
translation: MQVIAKAQQAEGAVGQAGASRGIGREGPSLFDGVDLHALAAQVSTPCHAYSANAIRERIAGLQSAFQGLDHRICYAVKANSNVAILQLMAHHGVGADIVSLGELNRALLAGIPAEHIVFSGVGKTTEEIASALAVGVWRFNVESLDELQLLQEVAQRHGVCARAAARINPDVDARTHEKISTGKSENKFGVSIDEARRWFANAGSMSNVLLDGLHAHIGSQILELEPFREALTRVEAFRRELVDAGHPIASVDIGGGLGVCYRKGVDHPIPAAEYAGLVRVVFAEFQGTLVLEPGRYLVAEAGILLTRVIRVKPGVDRSFLVVDAAMNDLLRPSLYEAWHEIVPLVGGDREPARYDVVGPVCETGDTFARGRAMARCEAGDLLSIGSTGAYGASMASTYNSRPLAAEVLLDDGRYAVIRRRQTMAEMIAGEQLPQVWNET
SIO_010081: HIV01_RS02280
subclass of: SO_0000673
so part of: HIV01_RS02280
location: 449249..450571
location: region:449249-450571:1
so has part: feature:449249-450571:1:exon

WP_200604641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:449249-450571:1:exon

HIV01_RS02285
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02285
old locus tag: HIV01_002285
so part of: sequence
location: 450582..452126
location: region:450582-452126:1
so has part: feature:450582-452126:1:exon
subclass of: SO_0000010

position:450582:1
position: 450582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:452126:1
position: 452126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:450582-452126:1:exon

HIV01_RS02285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02285
old locus tag: HIV01_002285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019465841.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: serine hydrolase
translation: MRCGLLALLLTAASGVQAEPGRHAKADVDAVFDQVVARYRLPGLALGIVEDGKVVYSRTAGELVEGEGRKIDSATLFKVASNTKSMTTATLARLVDAGKLRWDDPVVRWLPDFRMFDPWVGQQMQVRDLLIHNSGLRAGAGDLMLWPEPNTFTRADIIHGLAYLKPQRSFRAGYDYDNLLYIVAGEVAAAAGGAPYEQLVRREVFEPLGMQRCQVGQWRRDVVGNVAQPHMRQGERNIPVRSDGDVIAATTMDPAGGVRCSLDDMLTWIGAWLKPTGTDANWLSREQREALWAPQMPMPLSRRMREWDDSHFSAYGYGWRLADVDGTFKVLHTGTLMGMYSMVTLLPDKGVGFVILINGEGEDARTVLGQVLVKLYTRPDPSLTVAHYAGLLEQEDAKRPATEKAPDTSKRNKVTAKDLAPHLGVYRDPWFGEVSLCRDGDSVRLRARKSPMLTGIVQRAGKRWLVNWDDDSVDAEAWLDFPQARQMRMAKVDPQADFSCDYEDLAFTWEHGCE
SIO_010081: HIV01_RS02285
subclass of: SO_0000673
so part of: HIV01_RS02285
location: 450582..452126
location: region:450582-452126:1
so has part: feature:450582-452126:1:exon

WP_200606312.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:450582-452126:1:exon

HIV01_RS02290
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02290
old locus tag: HIV01_002290
so part of: sequence
location: 452123..452839
location: region:452123-452839:1
so has part: feature:452123-452839:1:exon
subclass of: SO_0000010

position:452123:1
position: 452123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:452839:1
position: 452839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:452123-452839:1:exon

HIV01_RS02290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02290
old locus tag: HIV01_002290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007973544.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M15 family metallopeptidase
translation: MKCGASAMMLVTALAVAACASTPPLVVSEATTPESAGLVDIRALVPDIDLDIRYAGSDNFVGTRVDGYGAARCYLLADAAKALQQAELDLRREGMRLRLYDCYRPARAVRHFVDWAGDLGDQRTKPEYYPRLDKRQLLGDYISPTSGHSRGATLDLTLMQCRADGSACVPLDMGTPFDFFDTRANTDSTQVDARQRENRQRLRSAMERAGFRNYPMEWWHFTLNPEPAPKVFFDVPIE
SIO_010081: HIV01_RS02290
subclass of: SO_0000673
so part of: HIV01_RS02290
location: 452123..452839
location: region:452123-452839:1
so has part: feature:452123-452839:1:exon

WP_207527059.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:452123-452839:1:exon

HIV01_RS02295
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02295
old locus tag: HIV01_002295
so part of: sequence
location: complement(452847..453845)
location: region:452847-453845:-1
so has part: feature:452847-453845:-1:exon
subclass of: SO_0000010

position:452847:-1
position: 452847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:453845:-1
position: 453845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:452847-453845:-1:exon

HIV01_RS02295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02295
old locus tag: HIV01_002295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008209465.1
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: beta-lactamase family protein
translation: MRQHTTLQEGIDALMRDYDGQAPGASVLVLRDGQALVQRSYGLADFESNIAANPDSNYRLASVSKQFTAAAILLLAQDGRLRLDDPARRWLPELPAAADAVTIRQLLTHTAGLIDYEDVMDPASEVQVHDADVLRLLSSQDRTYFAPGSDYRYSNSGYALLALIVERASGQRYATFLHDRIFTPLGMTGTVAYESGISEVARRTYGYSFEHGRWKRTDQSSTSAVLGDGGIYSSIADLAKWDAALYDERLLRSEWLARAFTPATATDDPDVRYGYGWRITGETLWHSGETIGFRNVIVRYPQRHLTVVVLTNRDDPEPYGLARQIAALAMTR
SIO_010081: HIV01_RS02295
subclass of: SO_0000673
so part of: HIV01_RS02295
location: complement(452847..453845)
location: region:452847-453845:-1
so has part: feature:452847-453845:-1:exon

WP_245156891.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:452847-453845:-1:exon

HIV01_RS02300
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02300
old locus tag: HIV01_002300
so part of: sequence
location: 454052..454675
location: region:454052-454675:1
so has part: feature:454052-454675:1:exon
subclass of: SO_0000010

position:454052:1
position: 454052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:454675:1
position: 454675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:454052-454675:1:exon

HIV01_RS02300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02300
old locus tag: HIV01_002300
inference: COORDINATES: protein motif:HMM:TIGR02999.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ECF-type sigma factor
translation: MDERKDGAAVGGGNESACPLQEQTLESLLRTARNSDTAALDRLYAAIYEELRRHARRQLASRNTTLTPTALVNEVYLKLSSASIDPRDRNHLFALSARAMRHIVIDHARRAATGKRGAQLVQVTLTGNLPDSRQDAASMLALDNALRLLAEVDSRLARVVELRYFGGYSEAQIAGSLGVTVRTVQRDWRKARAFLGAALAAGESGNQ
SIO_010081: HIV01_RS02300
subclass of: SO_0000673
so part of: HIV01_RS02300
location: 454052..454675
location: region:454052-454675:1
so has part: feature:454052-454675:1:exon

WP_200604644.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:454052-454675:1:exon

HIV01_RS02305
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02305
old locus tag: HIV01_002305
so part of: sequence
location: 454691..457492
location: region:454691-457492:1
so has part: feature:454691-457492:1:exon
subclass of: SO_0000010

position:454691:1
position: 454691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457492:1
position: 457492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:454691-457492:1:exon

HIV01_RS02305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02305
old locus tag: HIV01_002305
EC number: 2.7.11.1
inference: COORDINATES: protein motif:HMM:NF012298.2
GO function: GO:0004672 - protein kinase activity [Evidence IEA]
GO process: GO:0006468 - protein phosphorylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: serine/threonine-protein kinase
translation: MRTPVDLQRRAFDILDAAMDLPPPARAAWLDRACAGDARLRALAEQLLDGDQAADGTILDRHPDSLLATLGQVDAQDDRSADLIGDRIGAWLVRSVIGRGGMGVVYHATRADGAFEQDAALKLIRFGLDTPATRERFLRERQILAQLRHSGIAVVLDGGMSECGAPYYVMELVNGQPMSDWCDARRLALRRRVELFCQAVDAVSHAHGQRVVHRDLKPSNLLVTEEGRVKLLDFGIAELLIEGNGGAQTPEARVMTPQFAAPEQLDGHAATAASDIYQLGLLLYQLLSGVLPYRLTAADASVESIRQRLDAMPTLAQAAAMASPELAEHRGHDPRSLAQALSGDLGAIVAFCLQYEPERRYGSAAALAEDLRNWMSGCPVSVQPATSCYRLGKFVARHRFGVLALSTLFVAMLAGAGSTLWHARHAAIEAERARREALTAEAATRFLERLFSSALPLDGGDTGMTARELLERGAKRARIEFDNDPELRFRLLTTIGQNYATMGEDSTSVELFREALSIESDEIAPVTRATTAYQLATSSFLLGRMDEPLVAKALDWVGQATHPSALALRSSLLRLRGDIQIISGRYLQGMHDHEAARVLAERIAASNPLPLLDVLVRQAYVQWKILNLPERAMATFRYSEAIAARVDPREADLRRRFRIEFLIESGELALADHLIDEALAFRIGVYGENSMGMAQPLIHRGLLKLELGQHASAELDFREVIRIVDMFGQSGSNLAVTALIGLSRAQCADGRHQQCLDGAVRARLAVVAIMGERGFAVPAMDALIAEAEEGLGRHFESAEFARRAIDALVGAQRLAGHPRQILGVALYRSGRVADGIDTLRTARDELIQEHGQDHPRTVGAAVHLGRALLARGDVAAARATLLAVVTQLHKQVPQVRQQDLSDAYLALADVERRAGNLRLAHLYARRAARRPDG
SIO_010081: HIV01_RS02305
subclass of: SO_0000673
so part of: HIV01_RS02305
location: 454691..457492
location: region:454691-457492:1
so has part: feature:454691-457492:1:exon

WP_200604645.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:454691-457492:1:exon

HIV01_RS02310
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02310
old locus tag: HIV01_002310
so part of: sequence
location: 457601..458356
location: region:457601-458356:1
so has part: feature:457601-458356:1:exon
subclass of: SO_0000010

position:457601:1
position: 457601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:458356:1
position: 458356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:457601-458356:1:exon

HIV01_RS02310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02310
old locus tag: HIV01_002310
inference: COORDINATES: protein motif:HMM:NF024736.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MESALQCILGTFVPGAVGNRARPVRKAIDTTDDAEGAQPDPVTPRAPQAGADSPSLREVVLRINRDDRVAGSCRVEVVVDAAPGVATTVVQELLAQAASRVETFADRIQEQTERGATRIVVHCDSIWGDVGSSGPSAEQPFLTEAQWAAVMQAVFPLRGDRRKYRPQGVRRFIESVLWVACVDCVWSDLPPGRGSWRSVYVRFLRWSSAGIWPRVAAAMGDTSGPGRLLLERHSRYLTDAAKTRQRRRKDD
SIO_010081: HIV01_RS02310
subclass of: SO_0000673
so part of: HIV01_RS02310
location: 457601..458356
location: region:457601-458356:1
so has part: feature:457601-458356:1:exon

WP_200604646.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:457601-458356:1:exon

HIV01_RS02315
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02315
old locus tag: HIV01_002315
so part of: sequence
location: complement(458391..459797)
location: region:458391-459797:-1
so has part: feature:458391-459797:-1:exon
subclass of: SO_0000010

position:458391:-1
position: 458391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:459797:-1
position: 459797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:458391-459797:-1:exon

HIV01_RS02315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02315
old locus tag: HIV01_002315
inference: COORDINATES: protein motif:HMM:TIGR01845.1
GO component: GO:0009279 - cell outer membrane [Evidence IEA]
GO function: GO:0015288 - porin activity [Evidence IEA]
GO process: GO:0006810 - transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: efflux transporter outer membrane subunit
translation: MRAAALLIGVSIALTGCMLGPNYSRPDLELPVQYRAPLTQAEAQSIADVAWFDLFRDPQLSALIREAIDNNLDLRQALSRVEQARANAKFARGSLGPDIRGTLSSTPSAGSGDDDTVYSAGLSLVWEIDLFGKLRRGSEASRANLLATEDAARGVLATLVTQVAATWLSLRELDEERAIIERTITSQEESLRLIRAQLRSGVASGAEEQQAIAQLATTRAQLPSTEQQILATENVLAQLLGRYPQPIDRGSQMANGGMPDSPDIPTGLPTELLERRPDVRLAENQLHAATARVGVAVANRFPFPTIGLSALFGRTAVDLSDLGSSSRSLSVNSWGPYVDLPIIDFGRAGANVDLARAQTDEAAHVYRQTVLQALVEVSSNVSAYEKSASIISANEESTTANRENLRLQRLRYKAGVSSYLEVLDAERQLLSSELSLARARLLRLTSYIDVYRALGGGWSDEELLRIAQ
SIO_010081: HIV01_RS02315
subclass of: SO_0000673
so part of: HIV01_RS02315
location: complement(458391..459797)
location: region:458391-459797:-1
so has part: feature:458391-459797:-1:exon

WP_200604647.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:458391-459797:-1:exon

HIV01_RS02320
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02320
old locus tag: HIV01_002320
so part of: sequence
location: complement(459797..462979)
location: region:459797-462979:-1
so has part: feature:459797-462979:-1:exon
subclass of: SO_0000010

position:462979:-1
position: 462979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:459797-462979:-1:exon

HIV01_RS02320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02320
old locus tag: HIV01_002320
inference: COORDINATES: protein motif:HMM:TIGR00915.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: multidrug efflux RND transporter permease subunit
translation: MARFFIDRPVFAIVISLFLVLAGTLVMIGLPISQFPDIALPNVKVTTLYPGASADVVEDAVTAPLDTQINGVTDMKYIKSVSGDDGSTSISVTFDLERDVDIASVETQNRVAQIQPRLPSEVNDIGVTVAKSSPDTLMFLSFYSPKGSYDQLFLNNYLYNYILDTLKRVRGVGEAKVYGSEFGMRLWLRPDKMATLGLTATDVVNAIQEQNKQAAAGQVGQPPADSPSGFQYSLRLQGRLVEQSEFEDIILRSLPDGSYIRVRDIARVELGAKDYSTVAKFNGQPAAAMSIALAPGANALETAELINAEVKRLAESFPQDLDYDVTYDTSLFVVASIEEVVHTFVEALILVLIVVFLFLQSWRATLIPMLAVPVSLIATFIAYQFLGFSINTLSLFGMVLAIGIVVDDAIVVVEAVEHIMEHDKLPPKEATRKAMDEVSGPVVAIALVLSAVFIPMAFVPGVTGQLYKQFALTVAVSTLFSALVALTLTPALCTLLLKPKQPGPPKGLMGRFFARFNHYFERLTFHYTGVAKRGTGALKHIVVMMLVLLVALFLLFRITPTGFVPDEDVGAFFMQAILPDASSTKRTDNVVNEISAKLRGLDGVDAVLGITGYDIISGTAAPNAAMMVVKLKPWEDRKEKEQQVNALIQKAMGIGAQTPESVAIAFNPPALPGFGSVSGFSMMLQARDGQSAEELAETAAQFVQAAQKRPEIGRITTTYSASTPNYRITVDREKVKKLGIPISDVFGTLQVFLGSLQVNDFTRFGKNYRVSVQADAEFRRDISTLSTLFVRNGNGEMVPLDTVVTATPGIGPRFTMRYNLYRSAEMTGSQAPGYSSGDALQALREVAAESLPAGYGYEWSGQTAEEVEAGNAAALVMALSVVVVFLFLAALYESWAVPFAVLLATPFGVLGALIAILLAKLDFNVYGQIGLVTLIGLAAKNAILIVEFAKLYRESGMSIHDAAMEAAKLRLRPILMTSFAFILGVVPLVLASGAGAASKFSVGTVVFGGMLTATLLAVLVVPALYVLIQSLAERFGGPPKFKEGAATPHPPQAPSEGGAH
SIO_010081: HIV01_RS02320
subclass of: SO_0000673
so part of: HIV01_RS02320
location: complement(459797..462979)
location: region:459797-462979:-1
so has part: feature:459797-462979:-1:exon

WP_200604648.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:459797-462979:-1:exon

HIV01_RS02325
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02325
old locus tag: HIV01_002325
so part of: sequence
location: complement(462992..464224)
location: region:462992-464224:-1
so has part: feature:462992-464224:-1:exon
subclass of: SO_0000010

position:462992:-1
position: 462992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:464224:-1
position: 464224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:462992-464224:-1:exon

HIV01_RS02325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02325
old locus tag: HIV01_002325
inference: COORDINATES: protein motif:HMM:TIGR01730.1
GO function: GO:0005215 - transporter activity [Evidence IEA]
GO process: GO:0006810 - transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: efflux RND transporter periplasmic adaptor subunit
translation: MTIAVADVPLHVSAVDGPVIRSAGLAFALAMAGLLVMAGCGKKEAPPPAAVPVKVMTVLQQDTPLFEEFVGEVTGSREVSLRAQITGVLMSKHFDDGSLVTEGQKLFSIDPRAPLAEQANARAGLAAARADLARARQDVDRYGPLVKENAISKQIYDNAVAAMQAAQAQVSANQAVVDQASLGVEYATVTAPLTGRIGAAQVFAGDLITAGTTVLAEVSEDDPVWVYFSISEAKLLDYERRYRGGTPKADDPIRQVRMTLSDGTEYKLPGMIIFADRALDPRTGTYRLRAEFPNPQHQLYPGLFARIQVRADQRKGALLVPDRAVVQTLGKYFVTTVDADSKAQQVPVVPGPRYGGLWVIDKGLKPGDTVVVEGVQKARPGVPLKVTKVTYEQLQAPAPVAQPPGGATKG
SIO_010081: HIV01_RS02325
subclass of: SO_0000673
so part of: HIV01_RS02325
location: complement(462992..464224)
location: region:462992-464224:-1
so has part: feature:462992-464224:-1:exon

WP_200604649.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:462992-464224:-1:exon

HIV01_RS18075
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS18075
pseudo: true
so part of: sequence
location: <464609..>464734
location: region:464609-464734:1
so has part: feature:464609-464734:1:exon
subclass of: SO_0000010

position:464609:1
position: 464609
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:464734:1
position: 464734
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:464609-464734:1:exon

HIV01_RS18075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS18075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017161798.1
GO component: GO:0019867 - outer membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: glycine zipper 2TM domain-containing protein
SIO_010081: HIV01_RS18075
subclass of: SO_0000673
so part of: HIV01_RS18075
location: <464609..>464734
location: region:464609-464734:1
so has part: feature:464609-464734:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:464609-464734:1:exon

HIV01_RS18080
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS18080
pseudo: true
so part of: sequence
location: <464741..464983
location: region:464741-464983:1
so has part: feature:464741-464983:1:exon
subclass of: SO_0000010

position:464741:1
position: 464741
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:464983:1
position: 464983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:464741-464983:1:exon

HIV01_RS18080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS18080
inference: COORDINATES: protein motif:HMM:NF028308.2
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: RT0821/Lpp0805 family surface protein
SIO_010081: HIV01_RS18080
subclass of: SO_0000673
so part of: HIV01_RS18080
location: <464741..464983
location: region:464741-464983:1
so has part: feature:464741-464983:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:464741-464983:1:exon

HIV01_RS02335
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02335
old locus tag: HIV01_002335
so part of: sequence
location: 465033..465410
location: region:465033-465410:1
so has part: feature:465033-465410:1:exon
subclass of: SO_0000010

position:465033:1
position: 465033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:465410:1
position: 465410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:465033-465410:1:exon

HIV01_RS02335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02335
old locus tag: HIV01_002335
inference: COORDINATES: protein motif:HMM:NF024600.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EF-hand domain-containing protein
translation: MMTKLILLLLVAAATPAFAQVKADAAPARFDAADANHDGKVDRNEYGGFVQELVLLYDGNGDGDGKLSRAELASAPDPSKFDRIDSNKDGFLTIDEIDVFTDNDFAVMDANSDGAVDRAESAKHK
SIO_010081: HIV01_RS02335
subclass of: SO_0000673
so part of: HIV01_RS02335
location: 465033..465410
location: region:465033-465410:1
so has part: feature:465033-465410:1:exon

WP_200604651.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:465033-465410:1:exon

HIV01_RS02340
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02340
old locus tag: HIV01_002340
so part of: sequence
location: 465597..465953
location: region:465597-465953:1
so has part: feature:465597-465953:1:exon
subclass of: SO_0000010

position:465597:1
position: 465597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:465953:1
position: 465953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:465597-465953:1:exon

HIV01_RS02340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02340
old locus tag: HIV01_002340
inference: COORDINATES: protein motif:HMM:NF014643.2
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MALPLKLDAIEDLPRTPASDVKKLGWRGVMKAIGRMGKVVVTNHNEPEAVIIPAEEYDAMIRALHEAEAKNDSALDELRHRFDERLASLQAADAGDRLRALMHGPAKLRGKVKAGASH
SIO_010081: HIV01_RS02340
subclass of: SO_0000673
so part of: HIV01_RS02340
location: 465597..465953
location: region:465597-465953:1
so has part: feature:465597-465953:1:exon

WP_200604652.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:465597-465953:1:exon

HIV01_RS02345
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02345
old locus tag: HIV01_002345
so part of: sequence
location: 465950..466588
location: region:465950-466588:1
so has part: feature:465950-466588:1:exon
subclass of: SO_0000010

position:465950:1
position: 465950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:466588:1
position: 466588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:465950-466588:1:exon

HIV01_RS02345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02345
old locus tag: HIV01_002345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019182940.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zeta toxin family protein
translation: MKSRPVLYVLAGVNGAGKSSVGGHLLERAGLSWFNPDTFARELIAQTGCEQTQANAAAWQEGMRRLDEALERGSNYAFETTLGGRTVPARIKAAARTHDVLMWFCGLSSPEQHIARVKARVVTGGHDIPEAKIRERYPAALENLIALMPDLAHLQVYDNSVDVARGKAIPDPVLAAEMEAGKLVWPDDLASLGRTPEWAKPLLEAALLLSGR
SIO_010081: HIV01_RS02345
subclass of: SO_0000673
so part of: HIV01_RS02345
location: 465950..466588
location: region:465950-466588:1
so has part: feature:465950-466588:1:exon

WP_200604653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:465950-466588:1:exon

HIV01_RS02350
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02350
old locus tag: HIV01_002350
so part of: sequence
location: complement(466631..467707)
location: region:466631-467707:-1
so has part: feature:466631-467707:-1:exon
subclass of: SO_0000010

position:466631:-1
position: 466631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:467707:-1
position: 467707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:466631-467707:-1:exon

HIV01_RS02350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02350
old locus tag: HIV01_002350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005997085.1
GO function: GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alkene reductase
translation: MSTDLLFSPTRIGAIDVANRVAMAPLTRSRADMDGVQTPLAVEYYRQRASAGLIITEATNISRQGRGYAYTPGIYTDAHVAAWAPVTKAVHDAGGKIVVQLWHVGRMSHVSMQADGAAPVAPSALQAGGNVFTEAGFEAPSMPRALETDEIAGIIEDYRNAARKAKEAGFDGVEVHAANGYLLEQFLRDSTNQRQDCYGGSIENRARLTLEVVEAVAEVWGADRVGLRLSPLSTAIGDTALDSTPMETHEYLIRRLGEMGLAYLHVVEGQLHGDNGAFDIKALRAAFNGKYIANNGYDRQRAIEATTSGHADMVAFGKPFIGNPDLVERLRGNAPLLEAPATSYFGGGAAGYTELAAA
SIO_010081: HIV01_RS02350
subclass of: SO_0000673
so part of: HIV01_RS02350
location: complement(466631..467707)
location: region:466631-467707:-1
so has part: feature:466631-467707:-1:exon

WP_200604654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:466631-467707:-1:exon

HIV01_RS02355
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02355
old locus tag: HIV01_002355
so part of: sequence
location: 467820..468734
location: region:467820-468734:1
so has part: feature:467820-468734:1:exon
subclass of: SO_0000010

position:467820:1
position: 467820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:468734:1
position: 468734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:467820-468734:1:exon

HIV01_RS02355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02355
old locus tag: HIV01_002355
inference: COORDINATES: protein motif:HMM:NF015431.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysR substrate-binding domain-containing protein
translation: MRYDLNLLPVFLALMEERNVTRAAARLGITQPALSNALVRLRDMLQDPLFIRERYGMQPTQKAESLAPGIAAAVASLDELILGQQGFDPAKAERLFTIAPNSYVEFVLVPAIVARLRERAPGIRLRLTPYGTDLAETGAISGETAMVLGRIVDPPDNLVVQHLMDDGLACVVRADHPQVNKRLSRKQYEQLKHVNVLPAGRLRAGLFQALERQGLRRDVAVSVTHFLAIPEMLAVTDYCTTLPMQICRHLAGDARLKVLPAPVDLGTFPTEMAWHVRYRHDPAHQWLRALISEVAAEIAKASVP
SIO_010081: HIV01_RS02355
subclass of: SO_0000673
so part of: HIV01_RS02355
location: 467820..468734
location: region:467820-468734:1
so has part: feature:467820-468734:1:exon

WP_200604655.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:467820-468734:1:exon

HIV01_RS02360
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02360
old locus tag: HIV01_002360
so part of: sequence
location: complement(468820..468895)
location: region:468820-468895:-1
so has part: feature:468820-468895:-1:exon
subclass of: SO_0000663

position:468820:-1
position: 468820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:468895:-1
position: 468895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468820-468895:-1:exon

HIV01_RS02360
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS02360
old locus tag: HIV01_002360
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(468860..468862),aa:Ala,seq:cgc)
SIO_010081: HIV01_RS02360
subclass of: SO_0000673
so part of: HIV01_RS02360
location: complement(468820..468895)
location: region:468820-468895:-1
so has part: feature:468820-468895:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:468820-468895:-1:exon

HIV01_RS02365
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02365
old locus tag: HIV01_002365
so part of: sequence
location: complement(469003..469959)
location: region:469003-469959:-1
so has part: feature:469003-469959:-1:exon
subclass of: SO_0000010

position:469003:-1
position: 469003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:469959:-1
position: 469959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:469003-469959:-1:exon

HIV01_RS02365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02365
old locus tag: HIV01_002365
inference: COORDINATES: protein motif:HMM:NF015722.2
GO function: GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: formylglycine-generating enzyme family protein
translation: MRKKAWCFILLQLFIAAAVAAPPLTTKEAVIDAMRRGEAGVTFQECAQCPVMVIVPRGRFQMGSPDSEPGRGKDESPLHQVSIDYTLAVSIYEVTLAQYRDFTVASKRAVGGDCITDRVKVGDWQPNATTTYLDPGFSQEPNHPVVCVSWEDAQAYVDWINVQTGGAYRLPTEAEWEYLARTGSQHAYPWGDSADDGCKDANNADANFAKKYPDAEVAHCDDGSPNTAPVGRYRPNAFGLYDVMGNVNEWTLDCGAPDYLHAPTDGSAQLARGCDRRVTRGGSWGTTAKDTRSANRMRYSAGARDDSIGFRLVRVGAE
SIO_010081: HIV01_RS02365
subclass of: SO_0000673
so part of: HIV01_RS02365
location: complement(469003..469959)
location: region:469003-469959:-1
so has part: feature:469003-469959:-1:exon

WP_200604656.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:469003-469959:-1:exon

HIV01_RS02370
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: rnd
locus tag: HIV01_RS02370
old locus tag: HIV01_002370
so part of: sequence
location: complement(470047..471150)
location: region:470047-471150:-1
so has part: feature:470047-471150:-1:exon
subclass of: SO_0000010

position:470047:-1
position: 470047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:471150:-1
position: 471150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470047-471150:-1:exon

HIV01_RS02370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: rnd
locus tag: HIV01_RS02370
old locus tag: HIV01_002370
EC number: 3.1.13.5
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005417789.1
GO function: GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]
GO process: GO:0006396 - RNA processing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribonuclease D
translation: MPAAWITDPAALRAHFATPPARIGLDTEFIRERTFWPQLALVQISIERGDDEPEILLVDPLAPGILAALTPILADESIVKVMHSPSEDLVAFRHSCGVVPKPLFDTQLAAALAGIGAGLGYQKLVEQLTGVTLAKGETRSDWLRRPLSPAQLEYAADDVRHLFEMHDQLQHRLQELGRSEWLAEDAARTVINAENEGPERWPHATMRSAQFLERDAQLRLLRLLRWRDTYARDNDRPRNWILDNELAVNLARNPPMDRAGLQRDLDAHPKAPRKLGDAVWAALNTPLPDEADAPDANEGDNRDKQRLRKLQDAVAARSAELGLPDGVLASRRWLEALLDRGEWPDALSGWRREALEAGIAPLLAGQD
SIO_010081: HIV01_RS02370
subclass of: SO_0000673
so part of: HIV01_RS02370
location: complement(470047..471150)
location: region:470047-471150:-1
so has part: feature:470047-471150:-1:exon

WP_207527060.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:470047-471150:-1:exon

HIV01_RS02375
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02375
old locus tag: HIV01_002375
so part of: sequence
location: 471297..473090
location: region:471297-473090:1
so has part: feature:471297-473090:1:exon
subclass of: SO_0000010

position:471297:1
position: 471297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:473090:1
position: 473090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471297-473090:1:exon

HIV01_RS02375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02375
old locus tag: HIV01_002375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017112352.1
GO function: GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: formylglycine-generating enzyme family protein
translation: MSGCSREPSGSSREAAGARAPIVTISADQAVSPVPPWRAPAVEVNEANFKELKADAAEALKEERLFGTAADAIPLYLALRRFAPDDAAVQAGMRRAMTSLLGKGNEALAAIDRDPLSLRRAHEVAAVARAVAPDDAKVVAYLARLDKSDQAQEANRLGEEALNAGRLGVDGGDDTALGYFHQALELRPGDQRANQGIAAVESALIRRAEVAADHDDYEDAQRELDIAAKVRPGFASVDDARARVAMQRIVRVNALRDAGITVLTRNASVDEARRLLAVMLRIAPAGDPAARELRERIDLATHYGLFRPGQTFTDAMQGGGRGPQLVVIPHGAFRMGAPEGEIDSSDAERPLRNIRFERGLAMSRTEITVGEFRRFMAASKHRARATRRGYSNAYDERGGNFVRRGNVDWQSDYAGNPARDDLPVVHISAKDAIAYAEWLSAQTGQRYRLPSEAEFEYAVRAGNARRYPWGDGTPPVRAGNFTGSLDVSPSGRRWNNAFAGYGDGASGPAPVGSYRANAFGVHDLAGNVSEWVADCWHDTYRRAPRDGAAWLNPGCRSRVVRGGSWASSPAQTRSAWRQGNDGNVTSGRVGFRVVREI
SIO_010081: HIV01_RS02375
subclass of: SO_0000673
so part of: HIV01_RS02375
location: 471297..473090
location: region:471297-473090:1
so has part: feature:471297-473090:1:exon

WP_245156962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:471297-473090:1:exon

HIV01_RS02380
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02380
old locus tag: HIV01_002380
so part of: sequence
location: 473152..474063
location: region:473152-474063:1
so has part: feature:473152-474063:1:exon
subclass of: SO_0000010

position:473152:1
position: 473152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:474063:1
position: 474063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473152-474063:1:exon

HIV01_RS02380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02380
old locus tag: HIV01_002380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012480853.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M48 family metallopeptidase
translation: MRIDPMGGARQQGRPRRGFGGMRWWILILFAGYAAWQWFGSAKVDPYTGETAHYGTTAEEEVQLGAQAFQQVLGDANAQGALLPANAQVSQQIREIAQRLIARVPQVTAALAAQNKQEVPVDHQAFQWDVAVIQSDQVNAFCLPGGKMAVYTGLLPVAKNADAMAVVMGHEIAHALLRHGSQRMAQQKLVQMGQMAAGMAMGGMDPGQQQAIMAALGAGAQYGLILPYGRNHETQADKVGLMLAAAACYNPQEAIPLWQRMSELEGGARPPEFASTHPDPANRIQVLQSLMPQAEQFRAQYCK
SIO_010081: HIV01_RS02380
subclass of: SO_0000673
so part of: HIV01_RS02380
location: 473152..474063
location: region:473152-474063:1
so has part: feature:473152-474063:1:exon

WP_200604659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:473152-474063:1:exon

HIV01_RS02385
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: phaR
locus tag: HIV01_RS02385
old locus tag: HIV01_002385
pseudo: true
so part of: sequence
location: complement(<474190..474612)
location: region:474190-474612:-1
so has part: feature:474190-474612:-1:exon
subclass of: SO_0000010

position:474190:-1
position: 474190
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:474612:-1
position: 474612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:474190-474612:-1:exon

HIV01_RS02385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: phaR
locus tag: HIV01_RS02385
old locus tag: HIV01_002385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003486016.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: polyhydroxyalkanoate synthesis repressor PhaR
SIO_010081: HIV01_RS02385
subclass of: SO_0000673
so part of: HIV01_RS02385
location: complement(<474190..474612)
location: region:474190-474612:-1
so has part: feature:474190-474612:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:474190-474612:-1:exon

HIV01_RS02390
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: phbB
locus tag: HIV01_RS02390
old locus tag: HIV01_002390
so part of: sequence
location: complement(474790..475530)
location: region:474790-475530:-1
so has part: feature:474790-475530:-1:exon
subclass of: SO_0000010

position:474790:-1
position: 474790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:475530:-1
position: 475530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:474790-475530:-1:exon

HIV01_RS02390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: phbB
locus tag: HIV01_RS02390
old locus tag: HIV01_002390
EC number: 1.1.1.36
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014090372.1
GO function: GO:0018454 - acetoacetyl-CoA reductase activity [Evidence IEA]
GO process: GO:0042619 - poly-hydroxybutyrate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acetoacetyl-CoA reductase
translation: MQSRVALVTGGTGGIGSSIIQRLAQTGHRVATNYRDEERARAWQEKMRAAGVEVTLAPGDVSSPEQAQALIEQIERDLGPIEVLVNNAGITRDSTFHRMTPMQWNEVIGTNLNSCFNVTRPVIEGMRERKWGRIVQISSINGLKGQYGQANYAAAKAGMHGFTISLARENARFGITVNTVSPGYVATDMVMSVPEEVRAKIVAEIPTGRLGTPNEIAYAVSFLVAEEAAWITGSNLDINGGHHMGW
SIO_010081: HIV01_RS02390
subclass of: SO_0000673
so part of: HIV01_RS02390
location: complement(474790..475530)
location: region:474790-475530:-1
so has part: feature:474790-475530:-1:exon

WP_200604661.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:474790-475530:-1:exon

HIV01_RS02395
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: gluQRS
locus tag: HIV01_RS02395
old locus tag: HIV01_002395
pseudo: true
so part of: sequence
location: complement(475639..476572)
location: region:475639-476572:-1
so has part: feature:475639-476572:-1:exon
subclass of: SO_0000010

position:475639:-1
position: 475639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:476572:-1
position: 476572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:475639-476572:-1:exon

HIV01_RS02395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: gluQRS
locus tag: HIV01_RS02395
old locus tag: HIV01_002395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003472097.1
GO function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]
GO process: GO:0043039 - tRNA aminoacylation [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: tRNA glutamyl-Q(34) synthetase GluQRS
SIO_010081: HIV01_RS02395
subclass of: SO_0000673
so part of: HIV01_RS02395
location: complement(475639..476572)
location: region:475639-476572:-1
so has part: feature:475639-476572:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:475639-476572:-1:exon

HIV01_RS02400
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: htpX
locus tag: HIV01_RS02400
old locus tag: HIV01_002400
so part of: sequence
location: 476679..477587
location: region:476679-477587:1
so has part: feature:476679-477587:1:exon
subclass of: SO_0000010

position:476679:1
position: 476679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:477587:1
position: 477587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:476679-477587:1:exon

HIV01_RS02400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: htpX
locus tag: HIV01_RS02400
old locus tag: HIV01_002400
EC number: 3.4.24.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014160463.1
GO function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protease HtpX
translation: MFKRIALFLATNLAVLALLSIVMAVLQNYFGVTLGNTGGLLVMATVFGFGGSFISLMTSKWMAKRSTGAHVIDQPRNESEQWLVNTVRRQAEAAGIKMPEVAIYDGPEINAFATGPSRNNSLVAVSTGLLRAMNRDEAEAVLGHEVSHVANGDMVTMALIQGVLNTFVIVLSRVVGRVIDSFISGNREGGVGIGYFVIVFILDMIFGLFASMIAMWFSRHREFRADAGGARLAGRDKMIAALQRLSQTYGESTLPKTVQAFGISGAVGHGLRRLLMSHPPLEERIQTLRNAPLEQVRGTVVS
SIO_010081: HIV01_RS02400
subclass of: SO_0000673
so part of: HIV01_RS02400
location: 476679..477587
location: region:476679-477587:1
so has part: feature:476679-477587:1:exon

WP_200604663.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:476679-477587:1:exon

HIV01_RS02405
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02405
old locus tag: HIV01_002405
so part of: sequence
location: complement(477659..479734)
location: region:477659-479734:-1
so has part: feature:477659-479734:-1:exon
subclass of: SO_0000010

position:477659:-1
position: 477659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:479734:-1
position: 479734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:477659-479734:-1:exon

HIV01_RS02405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02405
old locus tag: HIV01_002405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011037435.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EAL domain-containing protein
translation: MQFGKDTALRLLIVDDSVEAAEAIVSGLRNSGIAVRPSRPENEAELAGMIAQHPLPDIVLAAREARAVPITKVMQAVDASGKDLPVLMLIDSIDDTRLLEMFTLGARGVILRGHADHVQSRVRREWADLEARRALRRLEAQVRETERRCDALIDSSREPIAYIHEGMHIRANPAYLEIFGFETFEDIEGMSLLDLIAPSRVDGFKQLLKQIGKGDAPPRHETEARALDGSNFPAVMEFTEASYEGEACLQVILRRQEIDPELAREVEALRQRDQVTGLLNRATFLRSLEDAVADAAQNATHHGLLLIEPDHFNRLLQDIGLDAADSLIAAMAERLRAALGPDDIAARFGEHQFAVLTNNSDHKRSMGLAESLRTAFADHVLETADRSLSTTVSIGGVLIGEKIASVTAVLGKASQCVQSASGVGGNRTDLFDPGAADRAEEERVEAWVTRIRDALDADRFVMDYQPLIGLHGEPIEMYEAYLRLRGEHGELVPPLTFLQIAEEHGLLWEIDRWVVGKAIAVIGERMRAGKQTTMLVKITQASLQDNTLQQFIQEQLARHGADGKLLVLQLPESKVFTHLRAAQEFQATVAQHGVRVGLEQFGVGLNSFQLLTHFDAALLKIDRSYMEDLTGNPDHQQRVREIADKARELGKITIAEFVQDAGSMSILFGAGIDYAEGNFLAPPGPVMDYEF
SIO_010081: HIV01_RS02405
subclass of: SO_0000673
so part of: HIV01_RS02405
location: complement(477659..479734)
location: region:477659-479734:-1
so has part: feature:477659-479734:-1:exon

WP_207527062.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:477659-479734:-1:exon

HIV01_RS02410
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: epmB
locus tag: HIV01_RS02410
old locus tag: HIV01_002410
pseudo: true
so part of: sequence
location: complement(479963..480997)
location: region:479963-480997:-1
so has part: feature:479963-480997:-1:exon
subclass of: SO_0000010

position:479963:-1
position: 479963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:480997:-1
position: 480997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:479963-480997:-1:exon

HIV01_RS02410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: epmB
locus tag: HIV01_RS02410
old locus tag: HIV01_002410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011408738.1
GO process: GO:0072581 - protein-N6-(L-lysyl)-L-lysine modification to protein-N6-(beta-lysyl)-L-lysine [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: EF-P beta-lysylation protein EpmB
SIO_010081: HIV01_RS02410
subclass of: SO_0000673
so part of: HIV01_RS02410
location: complement(479963..480997)
location: region:479963-480997:-1
so has part: feature:479963-480997:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:479963-480997:-1:exon

HIV01_RS02415
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: efp
locus tag: HIV01_RS02415
old locus tag: HIV01_002415
pseudo: true
so part of: sequence
location: 481121..481688
location: region:481121-481688:1
so has part: feature:481121-481688:1:exon
subclass of: SO_0000010

position:481121:1
position: 481121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:481688:1
position: 481688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:481121-481688:1:exon

HIV01_RS02415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: efp
locus tag: HIV01_RS02415
old locus tag: HIV01_002415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019301003.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0003746 - translation elongation factor activity [Evidence IEA]
GO process: GO:0006414 - translational elongation [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: elongation factor P
SIO_010081: HIV01_RS02415
subclass of: SO_0000673
so part of: HIV01_RS02415
location: 481121..481688
location: region:481121-481688:1
so has part: feature:481121-481688:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:481121-481688:1:exon

HIV01_RS02420
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02420
old locus tag: HIV01_002420
pseudo: true
so part of: sequence
location: 481828..483172
location: region:481828-483172:1
so has part: feature:481828-483172:1:exon
subclass of: SO_0000010

position:481828:1
position: 481828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:483172:1
position: 483172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:481828-483172:1:exon

HIV01_RS02420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02420
old locus tag: HIV01_002420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020851497.1
GO function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: TRZ/ATZ family hydrolase
SIO_010081: HIV01_RS02420
subclass of: SO_0000673
so part of: HIV01_RS02420
location: 481828..483172
location: region:481828-483172:1
so has part: feature:481828-483172:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:481828-483172:1:exon

HIV01_RS02425
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: ubiG
locus tag: HIV01_RS02425
old locus tag: HIV01_002425
so part of: sequence
location: 483193..483915
location: region:483193-483915:1
so has part: feature:483193-483915:1:exon
subclass of: SO_0000010

position:483193:1
position: 483193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:483915:1
position: 483915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:483193-483915:1:exon

HIV01_RS02425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: ubiG
locus tag: HIV01_RS02425
old locus tag: HIV01_002425
EC number: 2.1.1.222
EC number: 2.1.1.64
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009599589.1
GO function: GO:0008689 - 3-demethylubiquinone-9 3-O-methyltransferase activity [Evidence IEA]
GO process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG
translation: MNTPAPNDSNFSQAELDKFGALAQRWWDPQGPQKALHALNPARLGYVAQRTTLQSARVLDVGCGAGLLSEAMAGEGAQVTALDLAPELVKVARLHGLETGVKVDYRLQSVESLAEEMPGQFDAITCMEMLEHVPDPGSIISACTTLLRPGGRLFLSTLNRTPAAFALAIVGAEYVARVLPRGTHQYRDFIKPSELGAWLRAAGMQLEDVSGLMYEPWRNSARVIGRTDVNYLACARKPDA
SIO_010081: HIV01_RS02425
subclass of: SO_0000673
so part of: HIV01_RS02425
location: 483193..483915
location: region:483193-483915:1
so has part: feature:483193-483915:1:exon

WP_200604671.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:483193-483915:1:exon

HIV01_RS02430
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02430
old locus tag: HIV01_002430
so part of: sequence
location: 483919..484599
location: region:483919-484599:1
so has part: feature:483919-484599:1:exon
subclass of: SO_0000010

position:483919:1
position: 483919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:484599:1
position: 484599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:483919-484599:1:exon

HIV01_RS02430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02430
old locus tag: HIV01_002430
EC number: 3.1.3.18
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006450328.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphoglycolate phosphatase
translation: MPASPVFPRAVLFDLDGTLLDSAPDMVAAIDAMRAARGQSPMPLDELRPHVSKGARAMVAAAFPQVDDAQRESWIPEFLGHYERELGRHGRLFDGVEAMLEALEAAGSTWGIVTNKPEYLARQLMPVLGWEQRCAVLIGGDTLARRKPDPLPLTVAAGRIGIEPSQCIYVGDDERDIQAARAAGMPSVVALWGYRLDGDDPAAWQGDVMIETAGELIDAATWPVPR
SIO_010081: HIV01_RS02430
subclass of: SO_0000673
so part of: HIV01_RS02430
location: 483919..484599
location: region:483919-484599:1
so has part: feature:483919-484599:1:exon

WP_200604675.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:483919-484599:1:exon

HIV01_RS02435
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02435
old locus tag: HIV01_002435
so part of: sequence
location: 484581..485351
location: region:484581-485351:1
so has part: feature:484581-485351:1:exon
subclass of: SO_0000010

position:484581:1
position: 484581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:485351:1
position: 485351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:484581-485351:1:exon

HIV01_RS02435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02435
old locus tag: HIV01_002435
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: phytoene/squalene synthase family protein
translation: MAGAAMSEPVPMPGNGAGDGGSGDALDSFLDKFRARWPEWAVVQVFVPQEQRELALAWATLLQELTDAAWGGSDPRPGEAKLAWWAEELRGWTLGARRHPLGIALQKLPAPWLTLATALPYLRESRERPRDRDDAYSSLKPFAHAVAVIESALFDGAERGANEQAEPIISAGLLYSRLAHVGEAAAPLTTLARAGSQPVASAWAAELLQGWPPAGTATRPRRVWSALARQRLRRGDAALPLPPWSALLGAWRGARS
SIO_010081: HIV01_RS02435
subclass of: SO_0000673
so part of: HIV01_RS02435
location: 484581..485351
location: region:484581-485351:1
so has part: feature:484581-485351:1:exon

WP_207527063.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:484581-485351:1:exon

HIV01_RS02440
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: folE2
locus tag: HIV01_RS02440
old locus tag: HIV01_002440
so part of: sequence
location: 485482..486414
location: region:485482-486414:1
so has part: feature:485482-486414:1:exon
subclass of: SO_0000010

position:485482:1
position: 485482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:486414:1
position: 486414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:485482-486414:1:exon

HIV01_RS02440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: folE2
locus tag: HIV01_RS02440
old locus tag: HIV01_002440
EC number: 3.5.4.16
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019398689.1
GO function: GO:0003933 - GTP cyclohydrolase activity [Evidence IEA]
GO process: GO:0035998 - 7,8-dihydroneopterin 3'-triphosphate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GTP cyclohydrolase FolE2
translation: MTTTSQNPRRLPDVAFDAAAAARTLDWVGMSNIALPLRVASADGETITVAASVDVSVDLKDANARGIHMSRMYLQLQNAFASETVTPAGLRRVLQTLIDNQGGISSAARLVVRYDQLLLRQALASDNAGWKRYPVEIDASLREGHLHLALRFAVEYSSTCPASAALSRQLNAERFAEDFAGARPLSNAVVGEWLASERGLAATPHAQRSRADVRVELRPAFDELPLAALIDALEQALGTPVQTAVKREDEQAFARLNAENLMFCEDAARRVAAALSADPRIERFDAEVAHFESLHAHDAVARVSGQGAQA
SIO_010081: HIV01_RS02440
subclass of: SO_0000673
so part of: HIV01_RS02440
location: 485482..486414
location: region:485482-486414:1
so has part: feature:485482-486414:1:exon

WP_245156892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:485482-486414:1:exon

HIV01_RS02445
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02445
old locus tag: HIV01_002445
so part of: sequence
location: 486621..488252
location: region:486621-488252:1
so has part: feature:486621-488252:1:exon
subclass of: SO_0000010

position:486621:1
position: 486621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:488252:1
position: 488252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:486621-488252:1:exon

HIV01_RS02445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02445
old locus tag: HIV01_002445
EC number: 2.7.7.65
inference: COORDINATES: protein motif:HMM:NF019315.2
GO function: GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: diguanylate cyclase
translation: MLVATSVSAQLFDVARLDGDPLPVQVLAGELDGEFAQVEGQSVFETSSQPRWWRLTAREAVAPADAPNLVLRFPHLNQVEVWRPGEAMPVRRGLIGDVADRSFSTRALVVPLPQGLATGEQIYLRVHMLSPSPMPVAVESLEEVHRHDLRHVALRTLVLGTLLVLAMLAFGFWIGIGERSYVYLFMAMLAQALYQASIGGELRMLPWLADLIGYDPRVGRMFGMLTVLASNSFLAFYLGLPARQPRLMKVLHGCNGVLLLLMLATVASAASAIALTGNLVLLVSAAIMFVASVVGSFQRQREAYFMLLSWSPMVVLVILRMGELLGGWRNPEWLEYALPIGFALGGLVLTIGLTDHMHQLRRDRDHASRLATYDVLTGALTRSAIEERLEALVESAQRGRRPLSVVFFDVDHFKKINDEHGHRIGDQTLRIISLRTRNRLRTYDMVGRFGGDEILVVLPDTQLREALGVAENLRVSVNCRPLSIDGRLFPATLSLGVAELHHGESVEKLLERADAALYASKETGRDRVTGYTASRLRATAATV
SIO_010081: HIV01_RS02445
subclass of: SO_0000673
so part of: HIV01_RS02445
location: 486621..488252
location: region:486621-488252:1
so has part: feature:486621-488252:1:exon

WP_207527064.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:486621-488252:1:exon

HIV01_RS02450
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02450
old locus tag: HIV01_002450
so part of: sequence
location: complement(488263..489114)
location: region:488263-489114:-1
so has part: feature:488263-489114:-1:exon
subclass of: SO_0000010

position:488263:-1
position: 488263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:489114:-1
position: 489114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:488263-489114:-1:exon

HIV01_RS02450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02450
old locus tag: HIV01_002450
EC number: 3.4.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010382291.1
GO function: GO:0046872 - metal ion binding [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M23 family metallopeptidase
translation: MRLAAVMALLVLSGMATAQQAQSQRFHASFLPTSVPQGSLVIGLAAPDAIVEYDGRRLRVSADGTFAFGVGRDAKGPLSVKITDGNGDTVVNTIAVSARDWPVENINGVPPKTVDPPPEIAARIEREQAQVTAARVRDDDRDDYAQTFIWPLQGRISGRFGNQRVYNGTPKSPHSGMDIAAPTGTPIKAPAAGVVTFAAPDLYLTGGTLLIDHGHGVSSNFLHLSRIDVKVGDRVKQGQVIGKVGATGRATGPHLHWGMNWFDVRMDPLLVLEHGNSSTAAAK
SIO_010081: HIV01_RS02450
subclass of: SO_0000673
so part of: HIV01_RS02450
location: complement(488263..489114)
location: region:488263-489114:-1
so has part: feature:488263-489114:-1:exon

WP_245156963.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:488263-489114:-1:exon

HIV01_RS02455
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02455
old locus tag: HIV01_002455
so part of: sequence
location: complement(489117..490460)
location: region:489117-490460:-1
so has part: feature:489117-490460:-1:exon
subclass of: SO_0000010

position:489117:-1
position: 489117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:490460:-1
position: 490460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:489117-490460:-1:exon

HIV01_RS02455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02455
old locus tag: HIV01_002455
EC number: 3.5.2.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019302579.1
GO function: GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dihydroorotase
translation: MSTLIVNARLVNEGREFDGDLRIEAGRIAQIGSGLSARDGETVVDAGGRRLLPGMIDDQVHFREPGMEYKADIATESAAAVAGGLTTFMDMPNTNPPTLDAAALENKYQRATGRAWGNFGFYMGASNDNLAAIQSLDPRTAPGIKVFMGASTGNMLVDNPDILDGIFRDAPTPIITHCEDTPMIDAEMARYKAKYGDDIPAACHPDIRSREACIKSTRLALSLAKKHDSRLHVLHISTADELALFERGPLLRGDGTRKRITAETCIHFTRFDRADYERLGNLIKCNPAIKDASDREALIQALADDVIDVLATDHAPHTLEEKARPYASAPSGLPLVQYALNAALELVHEGRLSTAQVVQKFAHAPAQLFDVQGRGFLREGYAADLVLIDDTPFTVQREDVLSKCGWSPFEGTTFRSRIASTWVNGELVWDGRRLVGTPQGQRLAFDR
SIO_010081: HIV01_RS02455
subclass of: SO_0000673
so part of: HIV01_RS02455
location: complement(489117..490460)
location: region:489117-490460:-1
so has part: feature:489117-490460:-1:exon

WP_200604682.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:489117-490460:-1:exon

HIV01_RS02460
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: yidD
locus tag: HIV01_RS02460
old locus tag: HIV01_002460
so part of: sequence
location: complement(490448..490669)
location: region:490448-490669:-1
so has part: feature:490448-490669:-1:exon
subclass of: SO_0000010

position:490448:-1
position: 490448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:490669:-1
position: 490669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490448-490669:-1:exon

HIV01_RS02460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: yidD
locus tag: HIV01_RS02460
old locus tag: HIV01_002460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017158484.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: membrane protein insertion efficiency factor YidD
translation: MLRGYKRWISPLLGPRCRFHPTCSEYAMQAVARFGALKGSWLAVRRILRCHPLHPGGHDPVPEPLHGKHTCRH
SIO_010081: HIV01_RS02460
subclass of: SO_0000673
so part of: HIV01_RS02460
location: complement(490448..490669)
location: region:490448-490669:-1
so has part: feature:490448-490669:-1:exon

WP_207527161.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:490448-490669:-1:exon

HIV01_RS02465
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: dksA
locus tag: HIV01_RS02465
old locus tag: HIV01_002465
so part of: sequence
location: 490976..492121
location: region:490976-492121:1
so has part: feature:490976-492121:1:exon
subclass of: SO_0000010

position:490976:1
position: 490976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:492121:1
position: 492121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490976-492121:1:exon

HIV01_RS02465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: dksA
locus tag: HIV01_RS02465
old locus tag: HIV01_002465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019336819.1
GO function: GO:0019899 - enzyme binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA polymerase-binding protein DksA
translation: MAVKKTAKKAAKAVKKTVKPAAKKAVSSKPAAKKAVAKKPAAKKVASKKPVAKKAAPAKPVAKKPVVAKKAAVAKKAPVKKAAVAKKPVAKKAVPAKKPVAKKAAPVKPAAKPVAVKPAVAKQAPAKQAVPAKPAPSKALPRNEVKPAAKPESKPVVVKKPAPRPATKSASVEPAVSKPQVAKNPVTQSASNKAPAKAAAASIPATKTAPRPTGKVAVAVVAKPQAPAPRGKVKVVPYTTDESSGRPIVPAGYRPATDEEYMNPLQLEYFRQRLLRWRTDLVEESKQTIENLKDEVRDVGDEAERATRETENSLELRTRDRYRKLISKIDSTLKRVDSGDYGYCVDTGEEIGLERLEARLTAERTIDAQERWEHMQKQMGD
SIO_010081: HIV01_RS02465
subclass of: SO_0000673
so part of: HIV01_RS02465
location: 490976..492121
location: region:490976-492121:1
so has part: feature:490976-492121:1:exon

WP_200604693.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:490976-492121:1:exon

HIV01_RS02470
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02470
old locus tag: HIV01_002470
so part of: sequence
location: complement(492191..493456)
location: region:492191-493456:-1
so has part: feature:492191-493456:-1:exon
subclass of: SO_0000010

position:492191:-1
position: 492191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:493456:-1
position: 493456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:492191-493456:-1:exon

HIV01_RS02470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02470
old locus tag: HIV01_002470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008573410.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MSADADALPAAGVSELLRNRGFTGLLTYRLLAMLSYQIVAVTVGWHVYELTRDAFALGLIGLAEVIPYFCFALFAGYAVDHLPRRKLGMAACLGLLVTTLTLAAVAAGVLPAGISGFGTLTIYLAIAVNGVVRAFLAPVYMSLFARVLKRDQFARGAGVSSVVMQAGLVMGPAMGGLLVAWGGKTSAYLVAAGFALAAAIAVIAVRVTEPPKPAERAPVFKSIGEGLRFVFKTQVVLGAQALDMFSVLFGGAVALLPAFINEILHYGPEALGLLRASPAVGAVLVGIYLARRPLQRHAGRILLVAVAGFGLCIIGFALSRHLWLSALMLMLSGMCDGVSVVVRSTILQLATPDHMRGRVSSINGIFIGSSNELGAFESGVAARLLGLVPSVIFGGCMTLAVVGATAKLAPKLRRLDLRDLH
SIO_010081: HIV01_RS02470
subclass of: SO_0000673
so part of: HIV01_RS02470
location: complement(492191..493456)
location: region:492191-493456:-1
so has part: feature:492191-493456:-1:exon

WP_200604695.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:492191-493456:-1:exon

HIV01_RS02475
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02475
old locus tag: HIV01_002475
so part of: sequence
location: complement(493511..493963)
location: region:493511-493963:-1
so has part: feature:493511-493963:-1:exon
subclass of: SO_0000010

position:493511:-1
position: 493511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:493963:-1
position: 493963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:493511-493963:-1:exon

HIV01_RS02475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02475
old locus tag: HIV01_002475
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017159960.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SufE family protein
translation: MNAIAAPASPFPMEASPSEAQEAIRDEFAFFGDWSERYQYLIDLGRKLPDLPGEWKTEAHRLHGCQSMVWIVAEGDADRLDFHAISDSAIVSGLIYLALRVYSGRSAAQIAATDADYIAEIGLAKHLSPTRSNGLTALLGFIRDQARSRL
SIO_010081: HIV01_RS02475
subclass of: SO_0000673
so part of: HIV01_RS02475
location: complement(493511..493963)
location: region:493511-493963:-1
so has part: feature:493511-493963:-1:exon

WP_200604696.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:493511-493963:-1:exon

HIV01_RS02480
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: cysS
locus tag: HIV01_RS02480
old locus tag: HIV01_002480
so part of: sequence
location: complement(494012..495385)
location: region:494012-495385:-1
so has part: feature:494012-495385:-1:exon
subclass of: SO_0000010

position:494012:-1
position: 494012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:495385:-1
position: 495385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:494012-495385:-1:exon

HIV01_RS02480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: cysS
locus tag: HIV01_RS02480
old locus tag: HIV01_002480
EC number: 6.1.1.16
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012444736.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO process: GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cysteine--tRNA ligase
translation: MSLHLFNSLTRRVEPFVPLDPARPTMYVCGPTVYNFVHIGNARGPVVFGVLAELLRRRFGALAYARNITDVDDKINNAAREQGVPISAITSRFAAAYREDMAALGVKAPDLEPEATAHIGQIIAMIERLIEVGHAYAAEGHALFSVASYPDYGKLSRRDPEEMLAGARVDVAPYKRDPGDFVLWKPSTDDLPGWESPWGRGRPGWHIECSAMAAAHLGETIDIHAGGVDLQFPHHENEIAQSECAHGGRVFARHWLHNGMLNFGGAKMAKSVGNIQRVHDLVREYPPEALRLALLSAHYRQPLEWSDALIDQSVRTLDRLYGTLRDLADCAVATPLAIPAGIESALDDDLNTPQVLAEIARIAGDARKAESADERARLKGELLGAGLALGLLQQDPAQWFSRGAGNEDDGRIQALIDERIAAKKARDFARADAIRDELAGEGILLEDTAQGVRWKRA
SIO_010081: HIV01_RS02480
subclass of: SO_0000673
so part of: HIV01_RS02480
location: complement(494012..495385)
location: region:494012-495385:-1
so has part: feature:494012-495385:-1:exon

WP_200604697.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:494012-495385:-1:exon

HIV01_RS02485
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02485
old locus tag: HIV01_002485
so part of: sequence
location: 495620..496024
location: region:495620-496024:1
so has part: feature:495620-496024:1:exon
subclass of: SO_0000010

position:495620:1
position: 495620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:496024:1
position: 496024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:495620-496024:1:exon

HIV01_RS02485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02485
old locus tag: HIV01_002485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004427403.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLGLVLAAWPGIEARAQNTVIQAENVRFDYAQVLRVTPVYQTLKANTVEQKCESDSRLSRVVGAVKDALTREEKEQQDKCKPVTVEREYRRPIAYDVDYTYKGAKFRSRLAEDPGNRLRIRVSVTPVVAPAGDR
SIO_010081: HIV01_RS02485
subclass of: SO_0000673
so part of: HIV01_RS02485
location: 495620..496024
location: region:495620-496024:1
so has part: feature:495620-496024:1:exon

WP_200606316.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:495620-496024:1:exon

HIV01_RS02490
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02490
old locus tag: HIV01_002490
so part of: sequence
location: 496339..497358
location: region:496339-497358:1
so has part: feature:496339-497358:1:exon
subclass of: SO_0000010

position:496339:1
position: 496339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:497358:1
position: 497358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:496339-497358:1:exon

HIV01_RS02490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02490
old locus tag: HIV01_002490
EC number: 2.1.3.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017356627.1
GO function: GO:0016597 - amino acid binding [Evidence IEA]; GO:0043857 - N-acetylornithine carbamoyltransferase activity [Evidence IEA]
GO process: GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-acetylornithine carbamoyltransferase
translation: MTALGNRHFLNTQDWSRADLDALLAQAAAFKRSKAGEQLKGKSIALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVAKVLGRYVDLIGVRAFPKFVDWQYDREDIVLKSFAKYSPVPVINMETITHPCQELAHILALQEHFGTTDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDQRYMDWAAQNVAESGGSLAVSHDIESAYTGADVVYAKSWGALPFFGNWGPEKPIRDQYKHFIVDEAKMALTNNGVFSHCLPLRRNVKATDAVMDSPQCIAIDEAENRLHVQKAIMAALIGR
SIO_010081: HIV01_RS02490
subclass of: SO_0000673
so part of: HIV01_RS02490
location: 496339..497358
location: region:496339-497358:1
so has part: feature:496339-497358:1:exon

WP_200604699.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:496339-497358:1:exon

HIV01_RS02495
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02495
old locus tag: HIV01_002495
so part of: sequence
location: 497430..498623
location: region:497430-498623:1
so has part: feature:497430-498623:1:exon
subclass of: SO_0000010

position:497430:1
position: 497430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:498623:1
position: 498623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:497430-498623:1:exon

HIV01_RS02495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02495
old locus tag: HIV01_002495
EC number: 6.3.4.5
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007510562.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: argininosuccinate synthase
translation: MSKDIVLAFSGGLDTSFCVPYLKERGWNVHTVFADTGGVDAEERAFIEERAAELGVASHVTVDGGPAIWEGFVKPFVWAGEGYQGQYPLLVSDRYLIVEAALKRCEELGTKAIAHGCTGMGNDQVRFDLAVKALGDYEIVAPIREIQKEHTEVRAYEQKYLEERGFGVRAKQKAYTINENLLGLTMSGGEIDRWQAPGEGAVGWCKPRSEWPAQALRVKVSFVNGEAVALDGEKMDGHKMLAKLNGLFAQYGVGRGLYTGDTTIGLKGRIIFEAPGLTALLTAHRALEEAVLSKQQNRFKPDVARKWVELVYEGFFHDPLKTDLEAFLESSQSTVNGDVVLETQGGLVSAVAIESKHILNAKGATYAQAADWGVAEAEGFIKLFGMSSTLWAEINRK
SIO_010081: HIV01_RS02495
subclass of: SO_0000673
so part of: HIV01_RS02495
location: 497430..498623
location: region:497430-498623:1
so has part: feature:497430-498623:1:exon

WP_200604700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:497430-498623:1:exon

HIV01_RS02500
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02500
old locus tag: HIV01_002500
so part of: sequence
location: 498631..499719
location: region:498631-499719:1
so has part: feature:498631-499719:1:exon
subclass of: SO_0000010

position:498631:1
position: 498631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:499719:1
position: 499719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:498631-499719:1:exon

HIV01_RS02500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02500
old locus tag: HIV01_002500
EC number: 3.5.1.16
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009599434.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acetylornithine deacetylase
translation: MLAKTLKHLEALVSYDTRNPPRDIGTGGIFDYLRSQLTGFRIEVTDHGDGAVSMLAVRGNPKRLFNVHLDTVPSSEAWSADPHKLRVTADRAIGLGACDIKGAAAGLVTAASVTQGDAAFLFSTDEEANDARCIAAFLGSLHGFNEVIVAEPTQCEAVLAHRGISSVLLRFRGIAGHASGANAMQASALHQAIRWGGHALDYVESQAHQRFGGLTGLRFNIGRVEGGIKANMIAPSAELRFGFRPLPSMSIDGLHERFGTLVEAGAIERYEETFRGPSLPSGDVADAEQRRLEARDLADALQLPIGNAVDFWTEASLFSAAGMTALVYGPGDIAQAHTADEWVALEQLQRYTDSIIRILETT
SIO_010081: HIV01_RS02500
subclass of: SO_0000673
so part of: HIV01_RS02500
location: 498631..499719
location: region:498631-499719:1
so has part: feature:498631-499719:1:exon

WP_200604702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:498631-499719:1:exon

HIV01_RS02505
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02505
old locus tag: HIV01_002505
so part of: sequence
location: 499863..501185
location: region:499863-501185:1
so has part: feature:499863-501185:1:exon
subclass of: SO_0000010

position:499863:1
position: 499863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:501185:1
position: 501185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:499863-501185:1:exon

HIV01_RS02505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02505
old locus tag: HIV01_002505
EC number: 2.7.2.8
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017917306.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acetylglutamate kinase
translation: MNDTRDIQTRQTIVRLLSSMASAKEISQYLKRFSQLDAKRFAVVKVGGAVLRDDLEALTSSLAFLQDVGLTPIVIHGAGPQLDDEMAAAGITKQTVNGLRVTSPEALAIVRRVFQSQNLKLVEALQAFDARATSIVSGVFESEYLDRDTYGLVGEVKRVNLAPIEASLRAGSIPVIASLGETAGGQILNVNADFAANELVQKLQPYKIVFLTGTGGLLDDGGKVIDSINLSTEYEHLMSQPWINGGMRVKIEQIKDLLDKLPLTSSVSITKPAELAKELFTHKGSGTLVRRGERVLQVSRWDELDLERLRGLIESAFGRRLMPDYFERTTLHRAYVSENYRAAVILTQEDAGIYLDKFAVLDEAQGEGLGRAVWHVMREQNPRLFWRSRHGNPVNPFYYAESDGCIKQEKWKVFWYGMDGFAEIERCVEHCSGRTATLKD
SIO_010081: HIV01_RS02505
subclass of: SO_0000673
so part of: HIV01_RS02505
location: 499863..501185
location: region:499863-501185:1
so has part: feature:499863-501185:1:exon

WP_200604704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:499863-501185:1:exon

HIV01_RS02510
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02510
old locus tag: HIV01_002510
so part of: sequence
location: 501187..501807
location: region:501187-501807:1
so has part: feature:501187-501807:1:exon
subclass of: SO_0000010

position:501187:1
position: 501187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:501807:1
position: 501807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:501187-501807:1:exon

HIV01_RS02510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02510
old locus tag: HIV01_002510
EC number: 2.-.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010486646.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family protein
translation: MSASADHWNVTPTLRGQHVALEPLQMAHCDSLRIALGGGELSRLWYTNVPAPEQVESYVSAALDMQAQGKAMPFVVRDAGGDIVGCTRYYDLDPSVPRVQIGYTWYAPSVQRTGLNTEAKLLLLGHAFEAMGSICVGFETSWFNLASRNAIARLGAKQDGILRSHRRHADGSVRDTVAFSIIESEWPAVKRNLVHKLQNHGASGRD
SIO_010081: HIV01_RS02510
subclass of: SO_0000673
so part of: HIV01_RS02510
location: 501187..501807
location: region:501187-501807:1
so has part: feature:501187-501807:1:exon

WP_200604705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:501187-501807:1:exon

HIV01_RS02515
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: argC
locus tag: HIV01_RS02515
old locus tag: HIV01_002515
so part of: sequence
location: 501785..502744
location: region:501785-502744:1
so has part: feature:501785-502744:1:exon
subclass of: SO_0000010

position:501785:1
position: 501785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:502744:1
position: 502744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:501785-502744:1:exon

HIV01_RS02515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: argC
locus tag: HIV01_RS02515
old locus tag: HIV01_002515
EC number: 1.2.1.38
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019660497.1
GO function: GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
GO process: GO:0006592 - ornithine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-acetyl-gamma-glutamyl-phosphate reductase
translation: MEHPDVTKSVGIVGARGYVGAELIRLIAAHPDFELAFVSSRELVGQRVADHIAEYQGELRYTSPSHEELPALGADAVVLALPNGKAEACVAAFDTAGTDPVIVDLSADYRFDDGWYYGLPELTRAKYSGQRRISNPGCYATAMQLAVAPMVDALAGPVQCFGVSGYSGAGTSPSDKNDPEKLRDNLMPYALTNHVHEREVSRQLGHEVQFLPHVAPHFRGLTITANLPLSKAFAREEVVSRYVDRYAGEPLVEVGDEAPWVSAIAGRHHVELGGFTLTPDGRRLVVVATEDNLLKGAATQALQNLNLAFGLDEMAGIPR
SIO_010081: HIV01_RS02515
subclass of: SO_0000673
so part of: HIV01_RS02515
location: 501785..502744
location: region:501785-502744:1
so has part: feature:501785-502744:1:exon

WP_200604706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:501785-502744:1:exon

HIV01_RS02520
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: argH
locus tag: HIV01_RS02520
old locus tag: HIV01_002520
so part of: sequence
location: 502766..504055
location: region:502766-504055:1
so has part: feature:502766-504055:1:exon
subclass of: SO_0000010

position:502766:1
position: 502766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:504055:1
position: 504055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:502766-504055:1:exon

HIV01_RS02520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: argH
locus tag: HIV01_RS02520
old locus tag: HIV01_002520
EC number: 4.3.2.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014647782.1
GO function: GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO process: GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: argininosuccinate lyase
translation: MSDLLWQKPGVKVDARIQQFLAGEDVILDREFFLFDIEASRAHAEGLQQIGILDAEELAGLKRELEALAEDFRAGRFILDERFEDCHSAIESRLVERLGDAGKKIHTGRSRNDQILVATRLWLKDRLARVAATCRESAEVALARAEAEQGVPLPGYTHLQRAMVSSLGMWWAAWAEGFIDNAQRAVQTLHWVDANPLGSAAGYGVNLPLARDHTTTALGFGRMQVAATYAQISRGKFEMAAIEALSSALLDLRRLAWDLSLFTSAEFGFVALPSQYTTGSSIMPNKRNPDVIELMRASYSAAAAARTEIEQLLSLPSGYHRDLQFSKGAIFHAFGRGLGALELLPDLLRNLEWKTDRMREALDPSMYATDLAVDLARQGLPFREAYKQAADPARWEQGDPEASLAARVSPGAGAQLRLGELRSRLDALR
SIO_010081: HIV01_RS02520
subclass of: SO_0000673
so part of: HIV01_RS02520
location: 502766..504055
location: region:502766-504055:1
so has part: feature:502766-504055:1:exon

WP_200604707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:502766-504055:1:exon

HIV01_RS02525
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: proB
locus tag: HIV01_RS02525
old locus tag: HIV01_002525
so part of: sequence
location: 504052..505251
location: region:504052-505251:1
so has part: feature:504052-505251:1:exon
subclass of: SO_0000010

position:504052:1
position: 504052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:505251:1
position: 505251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:504052-505251:1:exon

HIV01_RS02525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: proB
locus tag: HIV01_RS02525
old locus tag: HIV01_002525
EC number: 2.7.2.11
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017167565.1
GO function: GO:0004349 - glutamate 5-kinase activity [Evidence IEA]
GO process: GO:0006561 - proline biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glutamate 5-kinase
translation: MSTPGSTADNSVRDFQAQPLPRWQRAVLKVGSSLLAGFSDEPDGLDPRYAAGLARFIAQARAQQREVVLVSSGAVAAGRGRIDTGGDSLVLRQALASLGQASLMGFWQQLSDRPVAQVLLTHDDLRNRRRYLNARATLRELLKLGALPIINENDAVAVDELKLGDNDNLAAAVASLVDADLLLIATDIGGLYSAHPQRDPTARAIDRIERITPELLLAASGGAGKLGTGGMRTKLEAAAKATAAGIPTALFCGRNDAVVRALGEGQLHGTLVLAQGDRLRARKQWLRHAPSSGRLLVDAGAVAALHRQGASLLPGGVAGVEGDFRRGDVIEIVATTAGAEPFARGLAQYSATEIGRIARRHSNDIEAVLGFRYGESVIHRDDLVLLVAAHDDETPEVKA
SIO_010081: HIV01_RS02525
subclass of: SO_0000673
so part of: HIV01_RS02525
location: 504052..505251
location: region:504052-505251:1
so has part: feature:504052-505251:1:exon

WP_200604709.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:504052-505251:1:exon

HIV01_RS02530
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02530
old locus tag: HIV01_002530
pseudo: true
so part of: sequence
location: 505248..506517
location: region:505248-506517:1
so has part: feature:505248-506517:1:exon
subclass of: SO_0000010

position:505248:1
position: 505248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:506517:1
position: 506517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:505248-506517:1:exon

HIV01_RS02530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02530
old locus tag: HIV01_002530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017462828.1
GO function: GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO process: GO:0006561 - proline biosynthetic process [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: glutamate-5-semialdehyde dehydrogenase
SIO_010081: HIV01_RS02530
subclass of: SO_0000673
so part of: HIV01_RS02530
location: 505248..506517
location: region:505248-506517:1
so has part: feature:505248-506517:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:505248-506517:1:exon

HIV01_RS02535
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02535
old locus tag: HIV01_002535
so part of: sequence
location: complement(506520..507503)
location: region:506520-507503:-1
so has part: feature:506520-507503:-1:exon
subclass of: SO_0000010

position:506520:-1
position: 506520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:507503:-1
position: 507503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:506520-507503:-1:exon

HIV01_RS02535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02535
old locus tag: HIV01_002535
inference: COORDINATES: protein motif:HMM:NF013431.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: D-hexose-6-phosphate mutarotase
translation: MWNTLRRLTPALPAFFVCDAWDRSIRACCERARRAAMMSGRFCLDGSMDLSCTPFQRDGSVCLRLNAADGAIAEISLHGAHVLSWQPAPGRERLYLSPRASFAEGAAIRGGIPVIFPQFGGRGSMVKHGFARLLAWRYVGIESDTGTPAAVLELVDSEDTRRLWPAHFRARLYVALTPAALTVRLAIRNQGEAPFSFTAALHTYLRVDDLDATTVQGLEAAGFEDSRDGQTSAAEGEPVRFQSEVDRLYPDCADALLLAQGDEVMRISAEGFRDTVVWNPGAELAARMADLGAGEHRHFVCVESGTVAVPVTLAPGEEWSGAQRLQS
SIO_010081: HIV01_RS02535
subclass of: SO_0000673
so part of: HIV01_RS02535
location: complement(506520..507503)
location: region:506520-507503:-1
so has part: feature:506520-507503:-1:exon

WP_207527065.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:506520-507503:-1:exon

HIV01_RS02540
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02540
old locus tag: HIV01_002540
so part of: sequence
location: complement(507517..507593)
location: region:507517-507593:-1
so has part: feature:507517-507593:-1:exon
subclass of: SO_0000663

position:507517:-1
position: 507517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:507593:-1
position: 507593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:507517-507593:-1:exon

HIV01_RS02540
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS02540
old locus tag: HIV01_002540
product: tRNA-Pro
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(507557..507559),aa:Pro,seq:cgg)
SIO_010081: HIV01_RS02540
subclass of: SO_0000673
so part of: HIV01_RS02540
location: complement(507517..507593)
location: region:507517-507593:-1
so has part: feature:507517-507593:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:507517-507593:-1:exon

HIV01_RS02545
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: hisS
locus tag: HIV01_RS02545
old locus tag: HIV01_002545
so part of: sequence
location: 507829..509226
location: region:507829-509226:1
so has part: feature:507829-509226:1:exon
subclass of: SO_0000010

position:507829:1
position: 507829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:509226:1
position: 509226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:507829-509226:1:exon

HIV01_RS02545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: hisS
locus tag: HIV01_RS02545
old locus tag: HIV01_002545
EC number: 6.1.1.21
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014160612.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO process: GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histidine--tRNA ligase
translation: MIKPRTPPGVMELLPPDQIAFQRMLDTIRRNFERFGFLPVETPVMELSEVLLTKSGGETERQVYFVQSTGALGKASEGSAGEGMPELALRFDLTVPLARYVAEHEHELAFPFRRYQMQRVYRGERAQRGRFREFYQCDIDVIGKDALSVRFDAELPAVIHAVFSELDIGAFTIQLNNRKLMRGFFEAQGIADGELQALVLREVDKLDKRGEDHVRETLTGEGFDLAADAVARILEFVKVRSTSHVDALAKLDALGEGNDALREGVAELREVLELVRALGVPESAYALNFSIARGLDYYTGTVYETTLNDYPQIGSICSGGRYENLASHYTKSKLPGVGISIGLTRLFWQLREAGLLGNASGSTVQAMVALMDGQSLTDALEIARRLRAAGINTEVQMEARKIGKQFQYASRAGIRFVALAGDDEKARGVVAVKDLLREEQFEVPLEELASTLRVELEQYRALAGR
SIO_010081: HIV01_RS02545
subclass of: SO_0000673
so part of: HIV01_RS02545
location: 507829..509226
location: region:507829-509226:1
so has part: feature:507829-509226:1:exon

WP_200604714.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:507829-509226:1:exon

HIV01_RS02550
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02550
old locus tag: HIV01_002550
so part of: sequence
location: 509346..511232
location: region:509346-511232:1
so has part: feature:509346-511232:1:exon
subclass of: SO_0000010

position:509346:1
position: 509346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:511232:1
position: 511232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:509346-511232:1:exon

HIV01_RS02550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02550
old locus tag: HIV01_002550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013535492.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aromatic amino acid lyase
translation: MKPIRLDGRSLTRAQLVDVAYGAHVQLAPEQLPAVARAAEFLAEQVRREEPIYGVSTGFGSNADRLLGNHHLRDELPGAARSDVTLHEELQRNLIVTHAVCVGEAFAPEIVRAMLCIRINTLMRGHSGIRVETLQALTAMLNAGIVPVVPQLGSVGASGDLAPLSHLAIVLLGGGEAFFEGQRIPGGEALKRAGLAPVTLSYKEGLALNNGTAQMLACGVLALAQLEDLLDTADLAAAMTIDAFAGRLGAFAEEVHALRPHPGQVHSAAHLRDLLGGSTLADIPYHLVPKFRAWQPSSWDTPESQALRFDIGWDWVPFSQRHGREKFYLRFRPFRGGKKHQPQDSYSLRCIPQVHGAVRDAVAQAARVLEVELNALTDNPIVFPDAKAEFVEQQVISAGHFHGMPLALAMSYVKAAIPVLASISERRLNKLVDPATNDGLPGFLIGNEDSTESGHMIVQYTAAAIVNDLASRAHPASVYSIPTSANAEDHVSMGANEARHVLAMADDLGKVLALELYTAAQALDLRRDMINAARDLADRADARALAAKVQGAPAADSPDYEAFLAEVEGLRVELAEAEEFHPGRAVAAAHAAIREAIPFLDRDRAMDGEVATAVRLVKEGIVLAAARA
SIO_010081: HIV01_RS02550
subclass of: SO_0000673
so part of: HIV01_RS02550
location: 509346..511232
location: region:509346-511232:1
so has part: feature:509346-511232:1:exon

WP_200604720.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:509346-511232:1:exon

HIV01_RS02555
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02555
old locus tag: HIV01_002555
so part of: sequence
location: complement(511263..513086)
location: region:511263-513086:-1
so has part: feature:511263-513086:-1:exon
subclass of: SO_0000010

position:511263:-1
position: 511263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:513086:-1
position: 513086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:511263-513086:-1:exon

HIV01_RS02555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02555
old locus tag: HIV01_002555
EC number: 2.7.7.65
inference: COORDINATES: protein motif:HMM:NF019315.2
GO function: GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: diguanylate cyclase
translation: MCWLWLAGLCLLLAAPAQATTAAGTTLRLGADTEQASLSPYLGYYHDVAARDDVDAAAMHLAQGKFAPLPGGRSAFGFRPGAFWFHARIVNNGNPEQRWLLVQSYALSDSIDVYARYPDGRTTFQAGGDHLPFSERSVRYRHPNFWLNLPPGQPVDVFVRVRSESSMQVPLDIYTTVAFAELSRDSQLVIGLYYGILVALFFYNLALWLSLRDASYFWYLFHLSAFGLVLFTLNGFGFEYLWPQSSWLSDRMVPLSICLAQIGMQQFARIFLGLRERWRLGDRIGLGLITFFALLGVASTWLPYHISTPIASAAVLVSIAWIAVVSIAIVRRGYAPAQLFLLAWAMFLLGTGLFVAIAFGMMPKTFITEYGVQIGSALEMLLLSIALGHRYAALRNENERIVREAKDQLEHKVQQRTVELRSALGQLEDAHARLRETSQRDALTGLHNRSHFRDRFEALLRQTREHRRPLSLLMIDLDNFKLINDQHGHLIGDDCLRWAARTLGHGLRPHHDALLARFGGEEFVVVLPGLNLSAARQVAEDLRQHLRDQPFRSEDSQITVTASIGVHAIETVSFGGIDPLLQLADQALYRAKADGRDCVRTSQVETV
SIO_010081: HIV01_RS02555
subclass of: SO_0000673
so part of: HIV01_RS02555
location: complement(511263..513086)
location: region:511263-513086:-1
so has part: feature:511263-513086:-1:exon

WP_200604727.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:511263-513086:-1:exon

HIV01_RS02560
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02560
old locus tag: HIV01_002560
so part of: sequence
location: 513356..513721
location: region:513356-513721:1
so has part: feature:513356-513721:1:exon
subclass of: SO_0000010

position:513356:1
position: 513356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:513721:1
position: 513721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:513356-513721:1:exon

HIV01_RS02560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02560
old locus tag: HIV01_002560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017908286.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YerC/YecD family TrpR-related protein
translation: MKRRPPELERGDDALTGLASALLALRSPQEVRAFLEDLCTPAELEAMTDRWRVVPLLIDNVPYREIHDRTQVSVTTIGRVARSLERGAGGYAIAYQRQVGEADQKTSETGETGLASARNSD
SIO_010081: HIV01_RS02560
subclass of: SO_0000673
so part of: HIV01_RS02560
location: 513356..513721
location: region:513356-513721:1
so has part: feature:513356-513721:1:exon

WP_200604729.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:513356-513721:1:exon

HIV01_RS02565
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: hisG
locus tag: HIV01_RS02565
old locus tag: HIV01_002565
so part of: sequence
location: 513736..514650
location: region:513736-514650:1
so has part: feature:513736-514650:1:exon
subclass of: SO_0000010

position:513736:1
position: 513736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:514650:1
position: 514650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:513736-514650:1:exon

HIV01_RS02565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: hisG
locus tag: HIV01_RS02565
old locus tag: HIV01_002565
EC number: 2.4.2.17
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019237692.1
GO function: GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP phosphoribosyltransferase
translation: MSPPANTPVRDRLRIAIQKSGRLAEPARALLASCGLSWRESRDRLFCYGESLPIDLLLVRDDDIPGLIADGVCDLGIVGRNVLLEQDGGRSGNGRPSVYREWRALGFGGCRLALAVPDSWDWQGPEQLAGKRIATSYPALLSRWLEEQGIAADVVLLSGSVEIAPRLGQAEAICDLVSSGATLTANQLKPVMTLLESEAVLAGPSTEFDPVRGELADLLLRRLDGALRIRHSKLLMFQAPRSLLPSLLPLLPDAEAPTVMRLDDGDDLALQALCHGAVTWQRLEELKRAGARGLMVLPVEGMLA
SIO_010081: HIV01_RS02565
subclass of: SO_0000673
so part of: HIV01_RS02565
location: 513736..514650
location: region:513736-514650:1
so has part: feature:513736-514650:1:exon

WP_200604731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:513736-514650:1:exon

HIV01_RS02570
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: hisD
locus tag: HIV01_RS02570
old locus tag: HIV01_002570
pseudo: true
so part of: sequence
location: 514674..515977
location: region:514674-515977:1
so has part: feature:514674-515977:1:exon
subclass of: SO_0000010

position:514674:1
position: 514674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:515977:1
position: 515977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:514674-515977:1:exon

HIV01_RS02570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: hisD
locus tag: HIV01_RS02570
old locus tag: HIV01_002570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007082792.1
GO function: GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: histidinol dehydrogenase
SIO_010081: HIV01_RS02570
subclass of: SO_0000673
so part of: HIV01_RS02570
location: 514674..515977
location: region:514674-515977:1
so has part: feature:514674-515977:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:514674-515977:1:exon

HIV01_RS02575
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: hisC
locus tag: HIV01_RS02575
old locus tag: HIV01_002575
so part of: sequence
location: 515974..517080
location: region:515974-517080:1
so has part: feature:515974-517080:1:exon
subclass of: SO_0000010

position:515974:1
position: 515974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:517080:1
position: 517080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:515974-517080:1:exon

HIV01_RS02575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: hisC
locus tag: HIV01_RS02575
old locus tag: HIV01_002575
EC number: 2.6.1.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005416329.1
GO function: GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histidinol-phosphate transaminase
translation: MSAAADAVTIASSPLLLVREDLRGFAGYQSARSQRLQGSVWLNANESPWRNDADGEGSLRRYPDPQPQALREALAGLYGCAPGQLLAGRGSDEGIDLLVRAVCRPGGDAVLVTTPTFGMYAVSARLHGTRVVDVPLVEDARGWQCDFAAVATAVRRDGVRLVFLCSPGNPTGALLPLEEIARLARELDGQALVVVDEAYLEFADSPSAISLLPAQRNVVVLRTLSKAHALAAARIGSVIADADLIDVLRRCQAPYPLPAACTAQALQALAPQVRSVTSEHVATVRGEREQLRSALAVLPGVRRAYDSRANFVLARFDDAQAAFDALLAAGVVVRDMRSAPGLGDALRISLGTPEQNRKVLAVLKEVLR
SIO_010081: HIV01_RS02575
subclass of: SO_0000673
so part of: HIV01_RS02575
location: 515974..517080
location: region:515974-517080:1
so has part: feature:515974-517080:1:exon

WP_200604739.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:515974-517080:1:exon

HIV01_RS02580
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: hisB
locus tag: HIV01_RS02580
old locus tag: HIV01_002580
so part of: sequence
location: 517077..518165
location: region:517077-518165:1
so has part: feature:517077-518165:1:exon
subclass of: SO_0000010

position:517077:1
position: 517077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:518165:1
position: 518165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:517077-518165:1:exon

HIV01_RS02580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: hisB
locus tag: HIV01_RS02580
old locus tag: HIV01_002580
EC number: 3.1.3.15
EC number: 4.2.1.19
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008571443.1
GO function: GO:0004401 - histidinol-phosphatase activity [Evidence IEA]; GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB
translation: MSATPATPILFVDRDGTLIEEPSDFQIDRFDKLRFVAGVIPAMLRLRDAGYQFVMVTNQDGLGSASFPRADFDGPHGLMMQVFESQGIAFRDVLIDTSLPADNAPTRKPGIGLALPFLQDRTIDWTRSAMVGDRDTDNAFARNLGIRAFQLRTAQFGGEWDWSGIAHALADAPRTARVNRTTRETRIEVGLDLDRSAEPVVTTGLGFFDHMLEQIGKHGGFALELRCEGDLHIDEHHTVEDSALALGQALREALGDKRGIGRYGFTLPMDESLASAALDFSGRPYFVFDGSFSRERVGGLPTELVPHFFRSLCEGAGMNLNLRVQGDNDHHKVEACFKAVARSLRQAIRREGNELPSTKGSL
SIO_010081: HIV01_RS02580
subclass of: SO_0000673
so part of: HIV01_RS02580
location: 517077..518165
location: region:517077-518165:1
so has part: feature:517077-518165:1:exon

WP_200604741.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:517077-518165:1:exon

HIV01_RS02585
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: hisH
locus tag: HIV01_RS02585
old locus tag: HIV01_002585
so part of: sequence
location: 518162..518764
location: region:518162-518764:1
so has part: feature:518162-518764:1:exon
subclass of: SO_0000010

position:518162:1
position: 518162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:518764:1
position: 518764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:518162-518764:1:exon

HIV01_RS02585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: hisH
locus tag: HIV01_RS02585
old locus tag: HIV01_002585
EC number: 4.3.2.10
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020851325.1
GO function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: imidazole glycerol phosphate synthase subunit HisH
translation: MTQVVLIDWGGGNIGSVRYALERLGVSAVLSADADTITAAQRVILPGVGAAPPAMARLRELGLVEPIRRLRQPLLGICLGMQLLYESSEEGDVECLGLLPGRIVRMTSAPGVRVPHMGWNQLQPSQSTDLLDGIDAGARAYFVHGYAAPLSADTLASSDHGTAFTAVAGRGNCFGAQFHPERSAAVGQRLLANFLAMEAA
SIO_010081: HIV01_RS02585
subclass of: SO_0000673
so part of: HIV01_RS02585
location: 518162..518764
location: region:518162-518764:1
so has part: feature:518162-518764:1:exon

WP_200604749.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:518162-518764:1:exon

HIV01_RS02590
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: hisA
locus tag: HIV01_RS02590
old locus tag: HIV01_002590
so part of: sequence
location: 518797..519543
location: region:518797-519543:1
so has part: feature:518797-519543:1:exon
subclass of: SO_0000010

position:518797:1
position: 518797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:519543:1
position: 519543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:518797-519543:1:exon

HIV01_RS02590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: hisA
locus tag: HIV01_RS02590
old locus tag: HIV01_002590
EC number: 5.3.1.16
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004083405.1
GO function: GO:0003949 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase
translation: MEFDLYPAIDVREGHMVRLHQGDYDRETRYEERPLGMAMRHARQGARWLHLVDLDAARHGGYTLLPLLRVLARTTWLRVQTGGGVRGEDDVARILEAGADRVVIGSLAVREPERVLGWVARFGAERITVALDARQDGNGEWQLPVSGWTETSSASLPALVRRFADGGVRHLLCTDISRDGTLGGPNLDLYRLIARLAPGLYVQASGGIRDIADILAARAAGCSGAVLGKALIEGRFALDEALERVRRC
SIO_010081: HIV01_RS02590
subclass of: SO_0000673
so part of: HIV01_RS02590
location: 518797..519543
location: region:518797-519543:1
so has part: feature:518797-519543:1:exon

WP_200606319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:518797-519543:1:exon

HIV01_RS02595
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: hisF
locus tag: HIV01_RS02595
old locus tag: HIV01_002595
so part of: sequence
location: 519537..520313
location: region:519537-520313:1
so has part: feature:519537-520313:1:exon
subclass of: SO_0000010

position:519537:1
position: 519537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:520313:1
position: 520313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:519537-520313:1:exon

HIV01_RS02595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: hisF
locus tag: HIV01_RS02595
old locus tag: HIV01_002595
EC number: 4.3.2.10
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009603761.1
GO function: GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: imidazole glycerol phosphate synthase subunit HisF
translation: MLSRRIVPCLDVRDGRVVKGVRFRDHVDMGDIVALAMRYRDEGADELVFYDITASPEGRSVDRAWVERVAREIDIPFCVAGGIRSVEDARTVLHAGADKVSINTPALERPQLIGEIADAFGQQCVVVGIDSLRDEDGQWRVRQYSGDPSRTRALPQRTLDWVDEAQQRGAGEIVLNCMGSDGVREGYDIEQLQAVRQRCQVPLVASGGAGTFDHFAEVFRQADVDAALAASVFHSGAVPIPELKRHLRGQGIEVRDVA
SIO_010081: HIV01_RS02595
subclass of: SO_0000673
so part of: HIV01_RS02595
location: 519537..520313
location: region:519537-520313:1
so has part: feature:519537-520313:1:exon

WP_200604751.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:519537-520313:1:exon

HIV01_RS02600
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: hisIE
locus tag: HIV01_RS02600
old locus tag: HIV01_002600
so part of: sequence
location: 520303..520926
location: region:520303-520926:1
so has part: feature:520303-520926:1:exon
subclass of: SO_0000010

position:520303:1
position: 520303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:520926:1
position: 520926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:520303-520926:1:exon

HIV01_RS02600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: hisIE
locus tag: HIV01_RS02600
old locus tag: HIV01_002600
EC number: 3.5.4.19
EC number: 3.6.1.31
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017917693.1
GO function: GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]; GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
translation: MSLEATTLAPPFDELAWDKQGGLLPAVVQDADTLAVLMVGYMDRDALKATVDSGHVTFFSRSRQRLWTKGESSGHFLELVSVEADCDADTLLVLARPLGPTCHLGRTSCFPQAQASFLAELDALIATRERERPAGSYTTSLFEGGMHRIAQKVGEEGVETALAAVAQPDEDLIGEAADLMYHLLVLLRARGLGLRDVEALLKTRHRS
SIO_010081: HIV01_RS02600
subclass of: SO_0000673
so part of: HIV01_RS02600
location: 520303..520926
location: region:520303-520926:1
so has part: feature:520303-520926:1:exon

WP_200604760.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:520303-520926:1:exon

HIV01_RS02605
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02605
old locus tag: HIV01_002605
so part of: sequence
location: 521001..522605
location: region:521001-522605:1
so has part: feature:521001-522605:1:exon
subclass of: SO_0000010

position:521001:1
position: 521001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:522605:1
position: 522605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521001-522605:1:exon

HIV01_RS02605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02605
old locus tag: HIV01_002605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012438268.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: calcineurin-like phosphoesterase C-terminal domain-containing protein
translation: MPRFQLLIALCLIFSSAAHAQAQPASITGTVYQDSNGNQRRDASERGIAGIKVSNGRELAVTDAQGRYRLHALDGSTVFVIKPAGYAAATGANGLPLFWHHAATLGHGPAGSPKLRYGGIAATAGGELDFALRKQSRLGGDLKMLVFGDPQPKSLTDVGYYERDIVAPLVGKHDVRLGLSLGDIVNDDLSLYPAMNRVTSQLGVPWMHVPGNHDLDFDATRDEDALLSFRNVFGPDSYAWEEPQASFIVLDDVVYLPGQNPAYVGGLREDQFAFLQAYLATLPKDRRVVISVHIPFFEPYPGVESFRRVDRDRLFAMLKDHSQVLLLSAHTHNQRHYRHDAATGWHGAQPLHEYNVGATCGAFWSGVKDAQGIPDTTMSDGTPNGYAWLTFKPDGDYSLRYQVARAPADRAMALYAPKVLRLGAWAANGVYANVFMGDADSRVEYRIDEGAWKPMRRVSQPDPTLVAENTADDKAGQLRGYDRSPEAVPSTHLWRGVLPTDVGAGEHLIQVRVFDRWRGELVDQTSYRLDQAKE
SIO_010081: HIV01_RS02605
subclass of: SO_0000673
so part of: HIV01_RS02605
location: 521001..522605
location: region:521001-522605:1
so has part: feature:521001-522605:1:exon

WP_200604762.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:521001-522605:1:exon

HIV01_RS02610
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02610
old locus tag: HIV01_002610
so part of: sequence
location: 522610..523194
location: region:522610-523194:1
so has part: feature:522610-523194:1:exon
subclass of: SO_0000010

position:522610:1
position: 522610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:523194:1
position: 523194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:522610-523194:1:exon

HIV01_RS02610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02610
old locus tag: HIV01_002610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007081480.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YdeI/OmpD-associated family protein
translation: MVATLPTDLPIQLFANPAAWEKWLLAHGNAPGLWLKIAKKDKGVVSVTYAEALDVALCHGWIDGLKRACDDQYFLQRFTPRRPKSLWSKINVGKVERLIAEGRMQAGGLREVEAARADGRWRAAYHAASGMEVPPELAAALAKNAKARRFFEQLDGTNRYAFCWRVHTAKKPETRNARAAKFVEMLARGEKIHA
SIO_010081: HIV01_RS02610
subclass of: SO_0000673
so part of: HIV01_RS02610
location: 522610..523194
location: region:522610-523194:1
so has part: feature:522610-523194:1:exon

WP_200604777.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:522610-523194:1:exon

HIV01_RS02615
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: mtnC
locus tag: HIV01_RS02615
old locus tag: HIV01_002615
so part of: sequence
location: complement(523355..524053)
location: region:523355-524053:-1
so has part: feature:523355-524053:-1:exon
subclass of: SO_0000010

position:523355:-1
position: 523355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:524053:-1
position: 524053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:523355-524053:-1:exon

HIV01_RS02615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: mtnC
locus tag: HIV01_RS02615
old locus tag: HIV01_002615
EC number: 3.1.3.77
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008268027.1
GO function: GO:0016862 - intramolecular oxidoreductase activity, interconverting keto- and enol-groups [Evidence IEA]; GO:0016791 - phosphatase activity [Evidence IEA]
GO process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acireductone synthase
translation: MTTRAILTDIEGTTSSISFVKDVLFPYARRALPRFVAARGKEPAVRKWLDAVAAENGGMCEDAMIVEVLQGWIDEDRKHTALKALQGMIWADGYKSVDFTAHIYPDAAPALRGWHAAGLPLFVYSSGSVPAQRLFFGHSDAGDLTALFSGWFDTEMGGKRDAQSYRNIVDSIGIPAGEIVFLSDVVEELDAAREAGLQTVLIDRLEDYPKPREGDAAHGHRRVERFDQIELA
SIO_010081: HIV01_RS02615
subclass of: SO_0000673
so part of: HIV01_RS02615
location: complement(523355..524053)
location: region:523355-524053:-1
so has part: feature:523355-524053:-1:exon

WP_200604779.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:523355-524053:-1:exon

HIV01_RS02620
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02620
old locus tag: HIV01_002620
so part of: sequence
location: complement(524050..524607)
location: region:524050-524607:-1
so has part: feature:524050-524607:-1:exon
subclass of: SO_0000010

position:524050:-1
position: 524050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:524607:-1
position: 524607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:524050-524607:-1:exon

HIV01_RS02620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02620
old locus tag: HIV01_002620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014160784.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acireductone dioxygenase
translation: MSRLRIFSETDTTTPSLATSDQAEIARELQRIGVAFEQWQASAPVAPGDAPEKIMEAYRADIDRLVSERGFKTVDVVSIAPDNPQREVMRAKFLDEHFHKEDEVRFFVAGSGLFTLHVGEQVYEIKCEQGDLIAVPDSTRHWFDMGPEPSFIAIRFFTEPDGWVGHFTGTDIAQRFPRYEKGQAG
SIO_010081: HIV01_RS02620
subclass of: SO_0000673
so part of: HIV01_RS02620
location: complement(524050..524607)
location: region:524050-524607:-1
so has part: feature:524050-524607:-1:exon

WP_200604781.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:524050-524607:-1:exon

HIV01_RS02625
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02625
old locus tag: HIV01_002625
so part of: sequence
location: complement(524604..525242)
location: region:524604-525242:-1
so has part: feature:524604-525242:-1:exon
subclass of: SO_0000010

position:524604:-1
position: 524604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:525242:-1
position: 525242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:524604-525242:-1:exon

HIV01_RS02625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02625
old locus tag: HIV01_002625
EC number: 4.2.1.109
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010482557.1
GO function: GO:0046872 - metal ion binding [Evidence IEA]
GO process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methylthioribulose 1-phosphate dehydratase
translation: MSTPLPYDPQRLAHCAGEIIVNVRELSELGWTPATSSNFSRRMDDQHIAITVSGRDKGRLTEADIMVVDLDGNPVATSNKSSAETLLHTQLYKRFPEIGCVLHTHSKVQTVASRLYSGQGHVHLEGYELLKAFSGNTTHEMSVELPVLPNSQDMHTLAAQVDCLLDRKAMWGYLIDGHGLYAWGKDMPEARRHLEAFEFLLGCELEIRRLQR
SIO_010081: HIV01_RS02625
subclass of: SO_0000673
so part of: HIV01_RS02625
location: complement(524604..525242)
location: region:524604-525242:-1
so has part: feature:524604-525242:-1:exon

WP_200604783.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:524604-525242:-1:exon

HIV01_RS02630
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02630
old locus tag: HIV01_002630
so part of: sequence
location: 525362..525715
location: region:525362-525715:1
so has part: feature:525362-525715:1:exon
subclass of: SO_0000010

position:525362:1
position: 525362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:525715:1
position: 525715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:525362-525715:1:exon

HIV01_RS02630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02630
old locus tag: HIV01_002630
inference: COORDINATES: protein motif:HMM:NF013517.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: high-potential iron-sulfur protein
translation: MNAHDPSRRGFLGRVATFLLAGLATQAALAQAAKPATKPATKPAALPPLPLDNPQAKALAYTENAATVKHPLFKPGSDCANCNFYKGAPGQAHGPCLMFPQHSVAAKGWCSAWAKKV
SIO_010081: HIV01_RS02630
subclass of: SO_0000673
so part of: HIV01_RS02630
location: 525362..525715
location: region:525362-525715:1
so has part: feature:525362-525715:1:exon

WP_200604785.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:525362-525715:1:exon

HIV01_RS02635
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02635
old locus tag: HIV01_002635
so part of: sequence
location: 525939..527321
location: region:525939-527321:1
so has part: feature:525939-527321:1:exon
subclass of: SO_0000010

position:525939:1
position: 525939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:527321:1
position: 527321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:525939-527321:1:exon

HIV01_RS02635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02635
old locus tag: HIV01_002635
inference: COORDINATES: protein motif:HMM:NF039830.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5692 family protein
translation: MQTTRTFSGLAGCLLVLLALLLLAGCERRSVDIGQAPEPGAESASPAPGISRTGGEWVVITTGAGRSGEKVASSWYLLRFRADSTVKLLWVMPGHFARERVAYSQVGDVITLRGAVDAPQVNGVAFTLGADQRMVASIPGAGGGDNLSFTHRSIGWPYVHWLLVFAGLTAAFMMWRQWKWFTPIVCGLGIVVMSFYWINESGVTSAFRWVKLYTLVVSIWFIWFLRYTPLHKYRWMRFLVAAILAVNILEAVEVDFKSGYMPNLLNGVAGILNILAITRWNAIGPNRTDVRDLVWPGQVVLWIIAYDIWNVTFSYLNFNEYTSSSIALNLVPTLIALWIPGVWVAARGTTLGFFYLYLFTFSVFVMEKGFVPIPINETWALLVASASFGINLVLCALVWNWKLFQRGPAWLSFGQYRHAERIDTVYDSIHVGLDKIPAMADYPPAKAQPDEANVSASAVR
SIO_010081: HIV01_RS02635
subclass of: SO_0000673
so part of: HIV01_RS02635
location: 525939..527321
location: region:525939-527321:1
so has part: feature:525939-527321:1:exon

WP_200604787.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:525939-527321:1:exon

HIV01_RS02640
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02640
old locus tag: HIV01_002640
so part of: sequence
location: complement(527388..528029)
location: region:527388-528029:-1
so has part: feature:527388-528029:-1:exon
subclass of: SO_0000010

position:527388:-1
position: 527388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:528029:-1
position: 528029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:527388-528029:-1:exon

HIV01_RS02640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02640
old locus tag: HIV01_002640
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007969706.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF937 domain-containing protein
translation: MTTSLTDDLLNQLQGQPLAQIGQQLGLSPSQASGAVSAALPLLLGALGRNAAQPQGAQALYGALERDHASLDIGSVLGSVMGGGGGGGGAGGQILGHIFGARQQGAAQGLGAATGLGSNQAGSLLQVLAPIVMAYLAKQVFSSGGNTLASQLPASPQSLEQALGQEQQTITQQGGIGGGLLGAVLDRDGDGDTDFSDLIGLAGSMMGGNQPRR
SIO_010081: HIV01_RS02640
subclass of: SO_0000673
so part of: HIV01_RS02640
location: complement(527388..528029)
location: region:527388-528029:-1
so has part: feature:527388-528029:-1:exon

WP_200604789.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:527388-528029:-1:exon

HIV01_RS02645
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02645
old locus tag: HIV01_002645
so part of: sequence
location: complement(528183..529688)
location: region:528183-529688:-1
so has part: feature:528183-529688:-1:exon
subclass of: SO_0000010

position:528183:-1
position: 528183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:529688:-1
position: 529688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:528183-529688:-1:exon

HIV01_RS02645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02645
old locus tag: HIV01_002645
EC number: 1.11.1.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012510445.1
GO function: GO:0004096 - catalase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: catalase
translation: MTKPTDKPEKTPLTTAFGAPVVDNQNSMTAGPRGPVLMQDVWLIEKLANLNREIIPERRMHAKGSGAFGTFTVTNDISKYTRAKIFSAVGKKTEMFARFTTVAGERGAADAERDIRGFALKFYTEEGNWDLVGNNTPVFFLRDPRKFPDLNKAVKRDPKTNLRSARNNWDFWTSLPEALHQVTIVMSDRGIPASYRHMHGFGSHTYSFINAANERYWVKFHIKTQQGIKNLTDAEAAQLVGSDRESHQRDLFDAIERGEFPKWTMYIQVMPESDAEKVPYHPFDLTKVWPKKDYPLIEVGVMELNRNPENFFADVEQSAFAPNNLVPGISVSPDKMLQARLFAYSDAQRYRLGVNHHQIPVNAARCPVHSNHRDGAMRVDGNYGGTLHYEPNSYQQWQEQPEYREPPLKINGNADFWNFREDDADYYKQPGDLFRLMSREQQQVLFENTARAMGDAPEFIKLRHIGNCTKADPAYGAGVAKALGLEAAVASQRSNEPMEAG
SIO_010081: HIV01_RS02645
subclass of: SO_0000673
so part of: HIV01_RS02645
location: complement(528183..529688)
location: region:528183-529688:-1
so has part: feature:528183-529688:-1:exon

WP_200604791.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:528183-529688:-1:exon

HIV01_RS02650
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: mutS
locus tag: HIV01_RS02650
old locus tag: HIV01_002650
so part of: sequence
location: complement(529891..532467)
location: region:529891-532467:-1
so has part: feature:529891-532467:-1:exon
subclass of: SO_0000010

position:529891:-1
position: 529891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:532467:-1
position: 532467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:529891-532467:-1:exon

HIV01_RS02650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: mutS
locus tag: HIV01_RS02650
old locus tag: HIV01_002650
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013534691.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
GO process: GO:0006298 - mismatch repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA mismatch repair protein MutS
translation: MSSAERPPEHTPLMKQFFAAKAEHPDVLMFFRMGDFYELFFDDARKAARLLDITLTQRGQSGGQPIPMAGVPHHSAEGYLARLVALGESVAICEQIGDPALAKGIVERKVVRIVTPGTVTDEALLNERRDTLLLTIARGKSGYGLAWADLAGGRFLVNEVASEDALEAELARLEPAETLIADEDGWARFVAERTGLRRRAPWLFDADSGRRQLLRFFNLHDLSGFGLEDKPLSIAAAAALLGYVEETQKQRLPHLTSIAVESGDGAIAMNAATRRHLEIDSRLDGDHRHTLLGVLDSTITPMGGRLLRRWLHRPLRERTPLRLRQQAVATLLDSRAGDALRERFRALGDLERILSRIALRSARPRDLSTLRDGLGMLPEVRAELAPLDSPHLAALAAELGEHDEHAHLLQSAIVAQPPVLARDGGVFAEGYDAELDELRTLSTHADQFLIDLEARERASSGIATLKVGYNRVHGYYIEISKGQADKAPTHYTRRQTLTGAERYITEELKQFEDKVLSARERSLSRERLLYEQLLDVLNERLEPLKRCAGALAELDVLCCFAERAQSLDWVAPTLGDEPGLHIERGRHPVVEAVRSDPFEPNDLVLGEDRRMLVITGPNMGGKSTYMRQNALIVLLAHTGSFVPASRATIGPIDRILTRIGAGDDLARGQSTFMVEMSETSYILHHATSQSLVLMDEIGRGTSTYDGLALAEACARHLAHHNRAYTLFATHYFELTTLAEPGSGIANVHLDAVEHGDQLVFMHAVKDGPADRSFGLQVAALAGLPKAVVQQARGRLAELEQQSRDAPVPSLAPVALDAPQQFGLFSPSSAALDALASLEPDELTPKQALEALYRLKSLS
SIO_010081: HIV01_RS02650
subclass of: SO_0000673
so part of: HIV01_RS02650
location: complement(529891..532467)
location: region:529891-532467:-1
so has part: feature:529891-532467:-1:exon

WP_245156893.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:529891-532467:-1:exon

HIV01_RS02655
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02655
old locus tag: HIV01_002655
so part of: sequence
location: 532883..535456
location: region:532883-535456:1
so has part: feature:532883-535456:1:exon
subclass of: SO_0000010

position:532883:1
position: 532883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:535456:1
position: 535456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:532883-535456:1:exon

HIV01_RS02655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02655
old locus tag: HIV01_002655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011036896.1
GO component: GO:0009279 - cell outer membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TonB-dependent receptor
translation: MTRKLLALAIATTLATPVWSVQAQEAAAAPVLQSGQLKKDDEPTTLAAMTVTAQKREEALQDVPISITALPEQLLQDTGVRDVKDLQVLVPGLTVTSTQSEAQTTARIRGIGTVGDNAGLESSVGVVIDGVYRPRNGVGFGDLGEIERIEVLKGPQGTVFGKNTSAGVINVITKRPHYLTQVEGELTVGNYNAVGLAGSLNVPLNDMSAFRVYAAKRKRDGFTDVHTGAGPRVETDDGDQNFHTLRGQLLLEPTDNLDINFIADFTSREENCCVGVTTVRGATGDIVNALSPDEGVAPVADPFARVAWSNRSTKQDIKDKGFAAEVNWITPWFSGATLTSITAWREWDSINGLDFDFSSADILYRNGEEDESLTGFETFTQEFRLTGASDSIDWMVGLFYSDEDLDRNETYRIGNAYEPYLSVALLSMINPALGRSPTAPLFLSQASGRPFGTVFAGFGADDHYKQNAKSAAIFTNNTWHATDALDLTLGLRYTREDKELDSAYSNPNGSPGCSAMLGPGGQQRVAAALLARGVPQAALPTVIPQVIGFSCLPWANPLHNGRVTHQESEEKEWSGTLKAAYRWNEHWMGYASAARGYKAGGFNLDRVQSNTGLSSGGSGIVPVNDTSFPGEFVDSYELGAKTTWDEGNLLLNATLFHQTYEDFQLNSFLGTSFVVRSIPEVVSKGIDTEVLWQATRGLMVQGGVTYADTRYGDSIPGGDFVAPTGALYKLPGSRVSFAPYWSSSASVTYDYPFAGDLLARFNLGAKYMSEYNTGSDLDVEKVQEGFTVVNARIGIGKQNRNWMVELWALNLTDEDYVQVGFDAPLQNVSPAPNNPFNSFNGFLGAPRTYGMTLRILY
SIO_010081: HIV01_RS02655
subclass of: SO_0000673
so part of: HIV01_RS02655
location: 532883..535456
location: region:532883-535456:1
so has part: feature:532883-535456:1:exon

WP_245156894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:532883-535456:1:exon

HIV01_RS02660
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02660
old locus tag: HIV01_002660
so part of: sequence
location: 535540..536040
location: region:535540-536040:1
so has part: feature:535540-536040:1:exon
subclass of: SO_0000010

position:535540:1
position: 535540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:536040:1
position: 536040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:535540-536040:1:exon

HIV01_RS02660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02660
old locus tag: HIV01_002660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013534695.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CinA family protein
translation: MKNDVSDAALHRLAEVVGEAARNHRQTLVTAESCTGGWIAKMLTDIPGSSTWFEAGMAAYSYEAKQALLGVRPQTLEQHGAVSRDTVIEMVSGALVHSGATLAVAVTGIAGPGGGTEDKPVGTVWIAWKRRGGYPTAVTFHFDGDRDDVRRQTVAAALHGLAELMA
SIO_010081: HIV01_RS02660
subclass of: SO_0000673
so part of: HIV01_RS02660
location: 535540..536040
location: region:535540-536040:1
so has part: feature:535540-536040:1:exon

WP_200604800.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:535540-536040:1:exon

HIV01_RS02665
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: lexA
locus tag: HIV01_RS02665
old locus tag: HIV01_002665
so part of: sequence
location: 536117..536779
location: region:536117-536779:1
so has part: feature:536117-536779:1:exon
subclass of: SO_0000010

position:536117:1
position: 536117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:536779:1
position: 536779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:536117-536779:1:exon

HIV01_RS02665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: lexA
locus tag: HIV01_RS02665
old locus tag: HIV01_002665
EC number: 3.4.21.88
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011269877.1
GO function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO process: GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcriptional repressor LexA
translation: MDITDTQRAILALIAERIEAEGVPPSQTEIARAMGFSSVRAAQYHLEALEQAGAIQRVPGRARGIRLVAPLAEVADTVAVQAADAAADAISDDALRLPVLGQVAAGRPIGADIGSDDFVLLDRVFFSPTPDYLLKVKGDSMRDEGIFNGDLIGVHRTRDARSGQIVVARIDDEITVKLLKIGKDRIRLLPRNPDYAPIEVEPDQDFAIEGLYCGLVRPNR
SIO_010081: HIV01_RS02665
subclass of: SO_0000673
so part of: HIV01_RS02665
location: 536117..536779
location: region:536117-536779:1
so has part: feature:536117-536779:1:exon

WP_200604802.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:536117-536779:1:exon

HIV01_RS02670
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: recA
locus tag: HIV01_RS02670
old locus tag: HIV01_002670
so part of: sequence
location: 537008..538048
location: region:537008-538048:1
so has part: feature:537008-538048:1:exon
subclass of: SO_0000010

position:537008:1
position: 537008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:538048:1
position: 538048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:537008-538048:1:exon

HIV01_RS02670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: recA
locus tag: HIV01_RS02670
old locus tag: HIV01_002670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005412937.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase RecA
translation: MDENKKRALSAALGQIEKQFGKGSVMRMGDRVAEPAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQTIAECQKLGGTAAFVDAEHALDPTYASKLGVNVDDLLVSQPDTGEQALEIADMLVRSGAVDMVVVDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRKLTGNIKRSNCMVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTRIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVDAKLVEKSGAWYSAYDERIGQGKENARQYLKDNPEVAKRLEAALREKFVATDAKRDEDGDDAVADD
SIO_010081: HIV01_RS02670
subclass of: SO_0000673
so part of: HIV01_RS02670
location: 537008..538048
location: region:537008-538048:1
so has part: feature:537008-538048:1:exon

WP_200604811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:537008-538048:1:exon

HIV01_RS02675
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: recX
locus tag: HIV01_RS02675
old locus tag: HIV01_002675
so part of: sequence
location: 538077..538628
location: region:538077-538628:1
so has part: feature:538077-538628:1:exon
subclass of: SO_0000010

position:538077:1
position: 538077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:538628:1
position: 538628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:538077-538628:1:exon

HIV01_RS02675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: recX
locus tag: HIV01_RS02675
old locus tag: HIV01_002675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003474067.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombination regulator RecX
translation: MHGDLLDDDPPGGGSGSDDRDGAGAAAGPARRRGRPEQTPLQRALGLLARREHSRKELSRKLTSRGLDAGDVEAAVGRLAGEGWQDDKRFAESLVRSRAGSGYGPVRIRAELATHGLDREAVARAMETYEGDWAENARELVQRRFGPGVTEELNLRRKAADFLMRRGFDGASVRAATRYDPDD
SIO_010081: HIV01_RS02675
subclass of: SO_0000673
so part of: HIV01_RS02675
location: 538077..538628
location: region:538077-538628:1
so has part: feature:538077-538628:1:exon

WP_200604813.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:538077-538628:1:exon

HIV01_RS02680
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: alaS
locus tag: HIV01_RS02680
old locus tag: HIV01_002680
so part of: sequence
location: 538858..541506
location: region:538858-541506:1
so has part: feature:538858-541506:1:exon
subclass of: SO_0000010

position:538858:1
position: 538858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:541506:1
position: 541506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:538858-541506:1:exon

HIV01_RS02680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: alaS
locus tag: HIV01_RS02680
old locus tag: HIV01_002680
EC number: 6.1.1.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013534703.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO process: GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alanine--tRNA ligase
translation: MKNPHHISTSEIRSDFLEFFRGKGHTIVPSAPLVPANDPTLLFTNSGMVQFKNVFLGSEKPGYVRAADVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKEDAIAWAWELLTKVWKLPAERLLVTVYHTDDEAYAIWNQKMGIPAERIVRIGDNKGAPYASDNFWQMADTGPCGPCTEIFYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLAAVLQGVHGNYEIDLFRHLIAKAAEFTSTADLGNKSLRVIADHIRACSFLIVDGVLPSNEGRGYVLRRIIRRALRHGWMLGQKGPFFSRMVAPLVEVMGDAYPELTAKREFVERALLAEEERFAETLDSGMRIFDEVASRSTGMIPGADAFRLYDTYGFPVDLTADIARERGLSVDMAGFDQSMEEQRRKAREAGKFGNATTMPAELAAQLSPTRFLGYDELGADDLQVLALLKDGRPVDQIDAGDDAVVILDRTPFYAESGGQVGDTGDLEAGAARFAVRDTQKFAGQFHGHVGNLASGSLKRGDRVRASVDAVRRAATVLNHSATHLLHSALRSVLGDHVTQKGSLVAPDRLRFDFAHFAPVSASDLAEIERRVNAEVRRNHAAEVHHMGMQEALDFGAMALFGEKYGDEVRVLRMGDTSTELCGGTHVSRTGDIGLFKIVSEGGVSAGVRRIEALTGQGALDFVAEEERRLDEAASLLGGNAADIADKLRSLLDRQKKLERELESIKAKAASGATSDLGASAAQVGAVKVVATRLEGFDAKALRDAVDRLKQQLGDSVIVLAGTSDGKAALVAGVNGAAAGRVKAGELLAHVASQINGKGGGRADMAQGGGDDGPALVQALAGVAGWVEVKLS
SIO_010081: HIV01_RS02680
subclass of: SO_0000673
so part of: HIV01_RS02680
location: 538858..541506
location: region:538858-541506:1
so has part: feature:538858-541506:1:exon

WP_200604814.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:538858-541506:1:exon

HIV01_RS02685
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: csrA
locus tag: HIV01_RS02685
old locus tag: HIV01_002685
so part of: sequence
location: 541644..541847
location: region:541644-541847:1
so has part: feature:541644-541847:1:exon
subclass of: SO_0000010

position:541644:1
position: 541644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:541847:1
position: 541847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:541644-541847:1:exon

HIV01_RS02685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: csrA
locus tag: HIV01_RS02685
old locus tag: HIV01_002685
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013534704.1
GO function: GO:0003723 - RNA binding [Evidence IEA]
GO process: GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006109 - regulation of carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbon storage regulator CsrA
translation: MLILTRRVGETLMIGDSVTVTVLGVKGNQVRIGITAPKDVAVHREEIYQRIQRGEEPADDAGKNTDG
SIO_010081: HIV01_RS02685
subclass of: SO_0000673
so part of: HIV01_RS02685
location: 541644..541847
location: region:541644-541847:1
so has part: feature:541644-541847:1:exon

WP_200604816.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:541644-541847:1:exon

HIV01_RS02690
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02690
old locus tag: HIV01_002690
so part of: sequence
location: 541932..542024
location: region:541932-542024:1
so has part: feature:541932-542024:1:exon
subclass of: SO_0000663

position:541932:1
position: 541932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:542024:1
position: 542024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:541932-542024:1:exon

HIV01_RS02690
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS02690
old locus tag: HIV01_002690
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:541966..541968,aa:Ser,seq:gct)
SIO_010081: HIV01_RS02690
subclass of: SO_0000673
so part of: HIV01_RS02690
location: 541932..542024
location: region:541932-542024:1
so has part: feature:541932-542024:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:541932-542024:1:exon

HIV01_RS02695
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02695
old locus tag: HIV01_002695
so part of: sequence
location: 542256..542332
location: region:542256-542332:1
so has part: feature:542256-542332:1:exon
subclass of: SO_0000663

position:542256:1
position: 542256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:542332:1
position: 542332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:542256-542332:1:exon

HIV01_RS02695
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2795387
locus tag: HIV01_RS02695
old locus tag: HIV01_002695
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:542290..542292,aa:Arg,seq:acg)
SIO_010081: HIV01_RS02695
subclass of: SO_0000673
so part of: HIV01_RS02695
location: 542256..542332
location: region:542256-542332:1
so has part: feature:542256-542332:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:542256-542332:1:exon

HIV01_RS02700
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02700
old locus tag: HIV01_002700
so part of: sequence
location: complement(542485..543525)
location: region:542485-543525:-1
so has part: feature:542485-543525:-1:exon
subclass of: SO_0000010

position:542485:-1
position: 542485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:543525:-1
position: 543525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:542485-543525:-1:exon

HIV01_RS02700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02700
old locus tag: HIV01_002700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007508153.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD-dependent epimerase
translation: MKVLVTGTAGFIGSHVALELLRRGDEVVGFDNLNNYYDVGLKKARLARFLGHPRYTHLHADLADRDAVEAAFERHRPQRVVHLAAQAGVRYAAENPHVYVSSNVTGFLHMLEGCRRHGSEHLVFASTSSVYGANTAMPFSEHQPSEHPLTLYAATKKANEQMAHSYAHLYGIPSTGLRFFTVYGPWGRPDMALFLFTKAILAGEPVPVFNHGRHKRSFTYIDDIVAGVVRALDRVPTKDDAWRGESPDPASSGVAPYRLYNIGSRESVELLRYIEVLEQCLGRKATLQMLPLQAGDVPSTEADCSDLAHDMGYSPQFTVEEGVENFVRWYRDYYHLGAAVPARQYA
SIO_010081: HIV01_RS02700
subclass of: SO_0000673
so part of: HIV01_RS02700
location: complement(542485..543525)
location: region:542485-543525:-1
so has part: feature:542485-543525:-1:exon

WP_200604817.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:542485-543525:-1:exon

HIV01_RS02705
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
gene: tviB
locus tag: HIV01_RS02705
old locus tag: HIV01_002705
so part of: sequence
location: complement(543578..544846)
location: region:543578-544846:-1
so has part: feature:543578-544846:-1:exon
subclass of: SO_0000010

position:543578:-1
position: 543578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:544846:-1
position: 544846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:543578-544846:-1:exon

HIV01_RS02705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
gene: tviB
locus tag: HIV01_RS02705
old locus tag: HIV01_002705
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015448736.1
GO function: GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO process: GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB
translation: MQTVKVGVVGLGYVGLPLAVAFAKYFDTVGFDINAARVEELRQGKDSTLEVDPAELAAAPRLRCSCELSELRECNVYIVTVPTPIDAAKRPNLGPLARASETLGKVLKHGDVVVYESTVYPGCTEEVCVPILERSSGLVFNRDFFVGYSPERINPGDKDHRLTSILKITSGSTPQVADFVDQLYGSIIEAGTHKASSLKVAEAAKVIENTQRDLNIALINDLAILFNKLGIDTLEVLQAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQEIGHHPDVILAGRRTNDGMGAYIASEVVRLMVRKGINPVQARILILGLAFKENCPDLRNTRVVDIVHALRGYNANVDVHDPWVAADEAAAEYGITTIDAPAAGEYDAVIVAVAHRQFAELGAPGVRALGKPVSVLYDVKYVLPRDAVDGRL
SIO_010081: HIV01_RS02705
subclass of: SO_0000673
so part of: HIV01_RS02705
location: complement(543578..544846)
location: region:543578-544846:-1
so has part: feature:543578-544846:-1:exon

WP_245156964.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:543578-544846:-1:exon

HIV01_RS02710
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02710
old locus tag: HIV01_002710
so part of: sequence
location: 545302..546090
location: region:545302-546090:1
so has part: feature:545302-546090:1:exon
subclass of: SO_0000010

position:545302:1
position: 545302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:546090:1
position: 546090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:545302-546090:1:exon

HIV01_RS02710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02710
old locus tag: HIV01_002710
inference: COORDINATES: protein motif:HMM:NF013786.2
GO function: GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 4'-phosphopantetheinyl transferase superfamily protein
translation: MTLIVPVRPLGVPGAMPDAPDLRPSRARSCVVAFAELEAWQSWLEEAWSLLDPAERTRVLHRRVPADREALTIAYALHRMVLSGVLGISAADVPLSRDERGCPCLPGMALHTSLSHADGVAAFAVCAMGPVGIDIEPSLRASELPQVSTSVCHAIEASQLAGLREPLYSRELLALWVRKEALLKAEGIGLEREMTAFVAADGAVLPLTASTADNAGPVRLSMLEIGARWTAAVAAPVDAVIEGVWLRPVGGRVVAEPALYVS
SIO_010081: HIV01_RS02710
subclass of: SO_0000673
so part of: HIV01_RS02710
location: 545302..546090
location: region:545302-546090:1
so has part: feature:545302-546090:1:exon

WP_200604825.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:545302-546090:1:exon

HIV01_RS02715
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02715
old locus tag: HIV01_002715
so part of: sequence
location: 546286..547680
location: region:546286-547680:1
so has part: feature:546286-547680:1:exon
subclass of: SO_0000010

position:546286:1
position: 546286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:547680:1
position: 547680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:546286-547680:1:exon

HIV01_RS02715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02715
old locus tag: HIV01_002715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007080497.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TIGR03013 family PEP-CTERM/XrtA system glycosyltransferase
translation: MVFGKASLKNRALTLIWVLELLLVMAAVAGAAWLRFMNDPEGHEIFSENLAVRAFMVALFVTTSMAALGLYEVHVRLNRFEFALRMLVSFAIGGIGLMVLYYLVPAAYIGRGVIVIALVLALAGMALLRLGVLQVFAGDLFRRRVLVLGAGHNANLINNRLRRNSDRRAFTLVGYVPIPGQEAAVPANLLVSPVDGLAELTHRLQISEVVVAPDERRGGLPMDEMLACVQRGVTMTDLSTFFEREAGIVTTNLVDPSWLVFSGGFDHSTSRCMNKRFFDVLAASALLMVTWPLMALVALCIRLESPGPILYQQTRIGEGGRPFELIKFRSMRVDAETDGVARWAQTGDDRTTRVGRFIRLVRLDELPQLFNILRGEMSIVGPRPERPQFVDMLSREIRYYAVRHCVKPGLTGWAQLRYPYGASVRDAEEKLKFDLFYVKNHGLAFDLIILLQTVEVVLFQRGAR
SIO_010081: HIV01_RS02715
subclass of: SO_0000673
so part of: HIV01_RS02715
location: 546286..547680
location: region:546286-547680:1
so has part: feature:546286-547680:1:exon

WP_200604829.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:546286-547680:1:exon

HIV01_RS02720
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02720
old locus tag: HIV01_002720
so part of: sequence
location: complement(547694..548374)
location: region:547694-548374:-1
so has part: feature:547694-548374:-1:exon
subclass of: SO_0000010

position:547694:-1
position: 547694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:548374:-1
position: 548374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:547694-548374:-1:exon

HIV01_RS02720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02720
old locus tag: HIV01_002720
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO process: GO:0006457 - protein folding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: J domain-containing protein
translation: MSQDFALLYYQLGLEPGCSLEDLKRAYRVRVGELHPDRHLDKPASSDAHLALTELTALYSKAIRFHRIHGRLPGAAPKVTVHAARGFEAAAPAAGPRTATQAVRVSQNRNTPALATITVLALIVIMVALHWSETQVAKKAEENLQAQQQSVRTAGTDQPTLELGMEEAAVISIQGAPVLVQDDVWNYGSSWVRFEEGHLVDWSSVPPNRLMTLTPRPVQEAEEEAR
SIO_010081: HIV01_RS02720
subclass of: SO_0000673
so part of: HIV01_RS02720
location: complement(547694..548374)
location: region:547694-548374:-1
so has part: feature:547694-548374:-1:exon

WP_200604830.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:547694-548374:-1:exon

HIV01_RS02725
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02725
old locus tag: HIV01_002725
so part of: sequence
location: 548759..556123
location: region:548759-556123:1
so has part: feature:548759-556123:1:exon
subclass of: SO_0000010

position:548759:1
position: 548759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:556123:1
position: 556123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:548759-556123:1:exon

HIV01_RS02725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02725
old locus tag: HIV01_002725
inference: COORDINATES: protein motif:HMM:TIGR01733.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: amino acid adenylation domain-containing protein
translation: MSTQAGTIVASQVRTGGLPDAFDSSLLDVLPQSVASLAGQQQGTLEFAVDASLAQALRNAQAADATDTPCRLATALALVEARLSGADDVTVRVVGADGTRQARIRVDGPLSSLRSCIAQASLVDGEAAPVVWASVAEGQAHDGAASSWCLRLGSEPVLEVVFRSPLSLAAATLLAGCVLRALEATVASPELSCDAVDVVDPDERERQLREWSTAPAARTRDGTVHDRFAQVCAQTPDAMAVVDSRSSLTYAELDRRAGSLASRLRSAGITTGQVVGMAVPRSVDSIVALLGVLKCGAAYLPLELSLPAERVAFMLADAKVDAVVVADTTVLPLPDGVARVPVDGDEPAWDGDCGTDADSLAYVLFTSGSTGTPKGVEVRHRSLLRRAHGVDYMALDAQTRLMHAAPLGFDISGLEIWGALLNGGVVVVNEEAVPSIAGLARTIKQHAPNAGVMAVALFNAVVDESPELFVDFRDLLIGGESLSADHVRRMQPLAPSLRIGNGYGPTECTILCTQYPIPALTADVSSIPIGRPVEDTSVYVLNPRRQLVPVGVIGELCVGGAGVARGYLNRPELNAERFVPDPFGAAGEVLYRTGDHVRYRADGLLEFVGRTDAQVKIRGYRIELTEIEAVLARHPSVASCVVEARADSPGEKRLVAYYVAAPTGDGATPQQLRAHLAASLPHFMVPTRYVGLDELPLTANAKIDRRALPAPDRRRPELTCDYAPPATPLEARICEAFGALLDIEGVGRLDNFFELGGSSLLAVRLAEQIRNEGWQDAAAAATTRVAATTIFQHPTVAALAAAIDGRERAQLQPAAKARALNRSEPIAVIAMAGRFPGADDVEGFWDNLLQGRDSISKFRIDELDPAVSAAERSDPAYVAARGVIDGVEMFDAAFFGIGPREAELMDPQQRIFLELCWECLERGGHAPDTTTVPVGVFAGMNNATYFQRHASAHPELINRVGALQVMLGNEKDYIATRVAHKLNLNGPAISLNTACSTSLVAICQAVDSLQSGLCDMALAGGIAVTCPPRSGYLYQEGSMLSPDGHTRTFDANAKGTVFGDGATVVLLKRLSDAIADGNHVFAVIRGAALNNDGSNRASFTAPSSEGQAAVIAMAHDRAGIDPRSISYVEAHGTATPLGDPIEIEGLTRAFRRGTADTGFCRIGSLKSNVGHLVTAAGAAGVIKTALALDEKRIPASIHFDSANPTIDFASTPFVVNAQLSPWHSDSGPRRAGVSSFGLGGTNAHVVMEEAPAQEPSSPASGSQLLVLSARTPAALGAAVTRLADHLQANPHENLADVAWTLAVGRKSFSHRIAVVADDIEGAIRALRDPDTQAEAARSRPARASEVVFMFPGQGATYPGMGRSLYEHEPAFRDALDECAVIARDALGFDLREAMFDADEQRLLPTSVMQPATFAIEYSLARTWMSQGVMPSAMIGHSVGEFVAATLAGVFTLSDALQLVARRGALMQAQPQGAMLSVRLPADSLRSRLPEGVSLAAENSPLASVVAGPGDAVARFQAQLEAEGVACRALRTSHAFHSAMMEAVVAPFREAVAAVPMNAPSLPLVSTVTGAWLDADTATSPDYWARHLREPVSFSPALQTLLDVPTRVLLEVGPRTTLNALARQQPAVQKQRMATISTLSDSPDNELRDLCAASGRLWSQGVAIDPASFDRRERRIRLRLPTYPFERQRYWVEAVTHATSNVIPHPAIATTPKLEPVMPQSALPAAPAPAQPEAGSARRDRLIGQLRGLFENVAGFDMADADTDTNFIELGLDSLMLTQVALQLQKTFPVAIGFRQLMGDCSSLDRLASAIDAQLPPDEVAAPVAPPQAPVQAAPPVMQAPVAAFAAAAPMAMPVLDAGNDFTRQVISQQMQLMSQQLALLSGGAVAAPVAVSAPVQAPSPAPIVAAPVAALVAATPAAAAQPAAAADAGDEDVAAPQIKYDIKKAFGAIARIDNNAQFELNPQQRRKLDAFIDRYIARTGKSKDYTQAHRGHLADPRVVN…
SIO_010081: HIV01_RS02725
subclass of: SO_0000673
so part of: HIV01_RS02725
location: 548759..556123
location: region:548759-556123:1
so has part: feature:548759-556123:1:exon

WP_200604831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:548759-556123:1:exon

HIV01_RS02730
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02730
old locus tag: HIV01_002730
so part of: sequence
location: 556120..562344
location: region:556120-562344:1
so has part: feature:556120-562344:1:exon
subclass of: SO_0000010

position:556120:1
position: 556120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:562344:1
position: 562344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:556120-562344:1:exon

HIV01_RS02730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02730
old locus tag: HIV01_002730
inference: COORDINATES: protein motif:HMM:NF012873.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: non-ribosomal peptide synthetase
translation: MNAVGVDYGSLDKASPADAGVDYDPFAEGGLARVAPTTEPQREVWLADRLGRDASLAYNESISLHFHGRLDADAVRTALRQLVARHDVLRSNFGPDGKTLCVAESVDFDLASIDLSGLTPDQRDARVAAHAREVVETPFELDHGLLLRAELLRLSDEEHLLVLTAHHLVCDGWSWWVIVRELGTLYTQALWHATPPLPAAESFADYALAEAEHPSCSLYRDDEAYWCQRFADGGPILDLPTDRPRPPRRTFASIREDHVLDDELVAAIRRLGARHGASLFATLLAGFAGLLTRLTAQSDVVVGIPAAAQSLDGHDHLVGHCVNLLPLRFELDLTQPFEQALAQAQETLLDSIEHQRYTFGTLLRKLPLQRDPARLPLVSVMFNIDQALDQEHTGFHGLSMQLITNPRSYENFELFVNAVQVRGGMRLECQYNTDLFDNETVRRWLRAYETLLRSAVARPDMAYGKLPLVSESAREELLALQPAATPFDRECRMHEFFERQCERTPDRVAVRFNGEAVSYASLEARANRIAHLLRARGVHRGALVGLVLDRGVDMLAGLLGVLKCGAGYVPLDPNFPAERLAYMAGDAGLAALLTTQSHAGNFDLRGRPVLALDRLDDELAAMPATPIGRDDAAAQPESIAYVIYTSGSTGRPKGVQVPHRAVSNFLTSMREEPGLGIDDRLVAVTTLSFDIAVLELMLPLSVGAEVILADRVTAADGVALAALLKQSGATVMQATPASWRLLLDAEWKGDASFKILCGGEALPVDLAAQLLQRCGSLWNVYGPTETTVWSTCARIVAPAPGQSTAAQPIDIHIGRPIANTQVWILDPRGELCPLGVPGEIWIGGDGVTQGYLNRPELTGERFVADPFSPVTATVPSPLLYRTGDRGRWRADGVLEHMGRLDFQVKVRGYRIELGEIEALLAAHPQVARTVVVAREDRPGDVRLVAYAVLQPGAALTDAELASYLKSSLPDYMIPQHIMFLEAIPLLPNGKIDRNSLPVPDMAVKLAGERVAPRNALERSIAQAMAQVLGVAEVGVDDDFFSLGGHSLLAAQLTSRINKELGISLSLRALFDGPTVARLARLVSEHDGEAAPPREPIVALADQSHGPMSVMQERLYLLEQFNPGQITYNTPSAHRLRGPLDVAAFQRAVNAMIQRQSALRTTIGIVDGEPVQVIHDSVELDITDVEDVGSFAADQRDKEVSRRMDVLIQTPFELDRSPLIRSRLFRLGPEEHVWFFMTHHLIWDGWSFDLMYTDMAELYAAQLEQREPSLPELPVSYLDFSVWHRQWLQGPEYARQLAFWRERLGNTGQGAAGQSAPGPGMAALPTDMPRRPGMSGRGVTHRIVVSEATTQKLHDTALKVDATLYMVLLTAYFTLISRTSGLRELIVGTPVRGRNTAEVENLMGYFTSLLPLRMEMDQDLTFAQAVKQVKDVVLDSFAHPDIRLEDLVRELSVRSREGGAVLYHALFSFQDIRQRMCDWGPLRHERYPVFQTASTQDLGLWFVEQDTGLSGGFIYNADIFLDETTALLRDRYIAVLEALGNDPSRTLAELTAFDDGQPLLFGKAPVETTPALAAETVGEVPEQAAAVELDPLGQQLLAIWRDLLRNPRITPDDDFFALGGHSLQAVQMFHRFNRETDINLPLATLLTARTVRALAEEYRRAGAHQSGATASASGHDPWSPLVPIRPQGDQLPLFLIHAVGGNVLNYRSLADAMPQGIPVYGLQALGLDGRTSPLTSVEKMAERYVREIRSVQPQGPYHLAGGSMGGIIAYEIAQQLVAAGERVGLLGLIDTSAEFGLGYREQAQRGLGARVQRLQQRLQGQTFSQRLATISGMVNGRIQARQLRQQAQQARTSGAELPHNVRYAEIEATHMRAYIDYVVRPYPAAMVLFRASEQPPQLHDKPALGWESMVGAVEVIAIPGDHRGMIEAPVLVQTLSRVIRRAQHGQAGQDEQIGSTIVPVTPAATVASDAVAVGRDDARAAYLRGLWKELLGVDVGDGDNF…
SIO_010081: HIV01_RS02730
subclass of: SO_0000673
so part of: HIV01_RS02730
location: 556120..562344
location: region:556120-562344:1
so has part: feature:556120-562344:1:exon

WP_200604832.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:556120-562344:1:exon

HIV01_RS02735
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02735
old locus tag: HIV01_002735
so part of: sequence
location: 562341..563147
location: region:562341-563147:1
so has part: feature:562341-563147:1:exon
subclass of: SO_0000010

position:562341:1
position: 562341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:563147:1
position: 563147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:562341-563147:1:exon

HIV01_RS02735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02735
old locus tag: HIV01_002735
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNRPLHEPLFFGAHERTLFGLLHSQPGPQRRAMVLCAPLLQEGIRSHRALWVLAESAAASGVASLCFDWYGTGDSAGEDTALSLAGMLADLDQARQTLALRAGTDRIEWLALRSAALPLLVHLAASSQPVELVLWDPQLSGTALVESWYEQHRAQMYGSGRYPHARHEPEPDELLGFAVDASLLGALRALDATQLQLPRGSHVRLLLWQADDDIVRFSHSQRMHGVTVETVLLEDLDRPGWEEPTQFGSQAYPRRSVARISQQWESAR
SIO_010081: HIV01_RS02735
subclass of: SO_0000673
so part of: HIV01_RS02735
location: 562341..563147
location: region:562341-563147:1
so has part: feature:562341-563147:1:exon

WP_200604833.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:562341-563147:1:exon

HIV01_RS02740
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02740
old locus tag: HIV01_002740
so part of: sequence
location: 563144..564070
location: region:563144-564070:1
so has part: feature:563144-564070:1:exon
subclass of: SO_0000010

position:563144:1
position: 563144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:564070:1
position: 564070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:563144-564070:1:exon

HIV01_RS02740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02740
old locus tag: HIV01_002740
inference: COORDINATES: protein motif:HMM:NF023568.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha/beta hydrolase
translation: MNLQVDYLRKQESAPSVAEVTAIPLSRVQERVDETAHRFGDGLIGVISHAVAGTAPRINTSRIGVVLLNAGLTRHVGPYRAYAELARRLAREGYPVLRFDQSGLGDSALPEQAAAGHRSREIDAAMSLLAEHAGAERFVLCGLCSGADDAFHVAAADHRVAGAILLDGLAYPTQGFWLRHALPRLLSPTKVIAYLRSRRNAGPSLADFRDFPAKADAARMLSDMVARDTRLLFVFTGGAYTYFNHRSQLAACLGRAARSPQVSLEYWREYDHTFYLRKHREMLFARISHWMATMWGQPAGSSREIAST
SIO_010081: HIV01_RS02740
subclass of: SO_0000673
so part of: HIV01_RS02740
location: 563144..564070
location: region:563144-564070:1
so has part: feature:563144-564070:1:exon

WP_200604834.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:563144-564070:1:exon

HIV01_RS02745
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02745
old locus tag: HIV01_002745
so part of: sequence
location: 564067..565572
location: region:564067-565572:1
so has part: feature:564067-565572:1:exon
subclass of: SO_0000010

position:564067:1
position: 564067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:565572:1
position: 565572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:564067-565572:1:exon

HIV01_RS02745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02745
old locus tag: HIV01_002745
inference: COORDINATES: protein motif:HMM:NF014051.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: oligosaccharide flippase family protein
translation: MSNGSSGSPGIGTHYLRYSTANVLVIMAGLVSFPVLTRLLDNTQFGILGYYDTWVLMAVAVAKLGAQHSIQRFYPHNGDGASQRAFSTNLFYLPLAGSLLLWVIVSLGVIGYGKVNGIGHSPVFWMALVMTPMLVYGSLVETVLRVTERSRIVMLTRVGWRWLQLLLMLVAVLAVQQSATAAYGGKLLAVAIGSVFYIAWAYRNLGFSRGAVDTASVKQSMGYGMPLVATEILAVALVSIDRLMLKGMSGDFAVVGIYSVGASLAMQVHMFMNLTVFESFAPVANRLYVTQDPSAVRALMLRMLMPMTYAAVAVALLLGCLGTDTIIALSGHGKAASGPVFAWMGAMNALLPVALVCGYGLVLERRTKVVLLMMCGSVLLNTALNFVLIPAYGVMGAVYATLASSMAAAVTHCLLVSPLLRQFPDRRTLATTAVALAAGLAGAGLASYLQLRPGWERLIFGGLLIGVPYLLTVLVLDPRLRAMLPLKRKAGAATVGETLAG
SIO_010081: HIV01_RS02745
subclass of: SO_0000673
so part of: HIV01_RS02745
location: 564067..565572
location: region:564067-565572:1
so has part: feature:564067-565572:1:exon

WP_207527066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:564067-565572:1:exon

HIV01_RS02750
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02750
old locus tag: HIV01_002750
so part of: sequence
location: complement(565617..567473)
location: region:565617-567473:-1
so has part: feature:565617-567473:-1:exon
subclass of: SO_0000010

position:565617:-1
position: 565617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:567473:-1
position: 567473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:565617-567473:-1:exon

HIV01_RS02750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02750
old locus tag: HIV01_002750
inference: COORDINATES: protein motif:HMM:NF041518.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: right-handed parallel beta-helix repeat-containing protein
translation: MRAFPRRHSRRLETAMPTLLLLLALLLLGAWRDASAASTYYVRTDGGDEKQCNGRADAPYPGSGNDVDCAWKHPYYALPTNDRPRIDGGDTLIIGAGDYMIGWGAPGLSENSIRCDRSAPYDCYPAAPPSGPDPAHKTRILGQGFDSGCKAPPKLWGTERVELVLNLQDSDNVEVGCLEITDRSDCVEFHTDSDLRCERDSFPHGNWASIGIGAKRSRNVWLHDLNIHGLSGRGVMAGGLTNWTIERVRIIANGWAGWDGDVGEGESSNEGDIIFRNVEIAWNGCAERWQTGEPVGCWAQEEGGYGDGLGTGKTNGHWLIEDSRIHHNTSDGLDLLYMDESKTGTTVVRRVYAAANAGNQIKTAGNALIENSVVIGQCAYFHGKFNMTDGDMCRAYGNAISVGVGRKHTATIRHNTITGEGDCLILTAGGDASSRIDIQNNALVGQRDLTSGDKGEMSCGHYADESKAVVNFSGNAFWNVKDDQCPSGNLCDRDPKLKGMDMADFDAVPLEGSPLIDHASQLSEVTSDYLKHARPVGAAPDIGAIEVQGVQAAAPAAGAVDSASEPQKSTGSGAGATGSGAPAAVQTSTMTIGAIVIASLLAGGVAAVARKQRPRRAG
SIO_010081: HIV01_RS02750
subclass of: SO_0000673
so part of: HIV01_RS02750
location: complement(565617..567473)
location: region:565617-567473:-1
so has part: feature:565617-567473:-1:exon

WP_200604836.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:565617-567473:-1:exon

HIV01_RS02755
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02755
old locus tag: HIV01_002755
so part of: sequence
location: 567617..568366
location: region:567617-568366:1
so has part: feature:567617-568366:1:exon
subclass of: SO_0000010

position:567617:1
position: 567617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:568366:1
position: 568366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:567617-568366:1:exon

HIV01_RS02755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02755
old locus tag: HIV01_002755
inference: COORDINATES: protein motif:HMM:NF014724.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YdcF family protein
translation: MSHLLLSPMTWGLLLGALLWLTWSRLWAPVRALGIVLMFAVLVLCTPLAANALIGDLESRIPAKAHCVAPGAPIVVLAGGLDGEPRADDDYAALTQASWRRLRGAVELWRTDPGSQLVIAGGGPFQVKEASVMARLARDWGVPESALRTETASTTTWESAFALRGTLPARMRLVSSAAHLPRALLSFRSAGFDPCVYASDSDYVPMGSVGYFLPQVSAVAKTQSALYELAGMIQYRMRARETVPVTATR
SIO_010081: HIV01_RS02755
subclass of: SO_0000673
so part of: HIV01_RS02755
location: 567617..568366
location: region:567617-568366:1
so has part: feature:567617-568366:1:exon

WP_200604837.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:567617-568366:1:exon

HIV01_RS02760
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02760
old locus tag: HIV01_002760
so part of: sequence
location: complement(568363..569607)
location: region:568363-569607:-1
so has part: feature:568363-569607:-1:exon
subclass of: SO_0000010

position:568363:-1
position: 568363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:569607:-1
position: 569607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:568363-569607:-1:exon

HIV01_RS02760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02760
old locus tag: HIV01_002760
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF024831.2
GO function: GO:0016757 - glycosyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 4 protein
translation: MARILALTSRLPYPPREGHQLRAWHVLKALASRHEVTLLSFLRKDDALDEAGPLRDVLARLETFPIASEHSHASMAGALLRGTSTRTPFLVAKYDSAALRRRLAELARDADLVHFDMLPLMAHVDCVPAGVPVTFNAHNVEHHLLAKRAQIEPRLAARVFLASQVSRLQAFERHACQRADAILACSEPDAHALRELAPGCDVGVIANGVDLDGNRPAPAAPDPDRLVFVGQMGWFPNRDGVDWFLQSVFPRILAARPQAQFVLVGKADGYEVPATVAGNVRLAGFVDDLRPDVHAAAVYVVPLRAGSGTRLKVLEAMALGKAIVTTTVGSEGIELEHGDSALFADDAEDFARATLALMDSPERVAAMGVAARRLAEASYGWEAIGAQLLHRYDGLLGRAVFESIAAPGGRVHAA
SIO_010081: HIV01_RS02760
subclass of: SO_0000673
so part of: HIV01_RS02760
location: complement(568363..569607)
location: region:568363-569607:-1
so has part: feature:568363-569607:-1:exon

WP_200604838.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:568363-569607:-1:exon

HIV01_RS02765
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02765
old locus tag: HIV01_002765
so part of: sequence
location: complement(569621..570763)
location: region:569621-570763:-1
so has part: feature:569621-570763:-1:exon
subclass of: SO_0000010

position:569621:-1
position: 569621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:570763:-1
position: 570763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:569621-570763:-1:exon

HIV01_RS02765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02765
old locus tag: HIV01_002765
inference: COORDINATES: protein motif:HMM:NF025025.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 2 protein
translation: MTTLAFSAETVFWLCTALVAYAYVGYPLFVALLSQRYGQVPFESRLCPALTVVVAAYDEELRIAARIDDILAEDYPPQRLQVLVVSDGSRDGTADAAAIGDPRVRVLALPRNVGKAAAINAALRHVETELVAFTDVRQRFAPRALRALVAPFADPAIGAVTGELVIAAGKDRAATEGVGLYWRMEKRLRADEARLGWLHGVTGAIHAMRRHLFRPIPAGTVLDDMWMPLQVLWSGHQVWMSRHSIAHDHASASADEEFHRKLRTLAGNWQLLARMPALMNPFANPVFFAWFSHKFLRLLVPWALLLALAASALASGPFYRWAFYAQLLGYAGAMIGLGLPKLASRLPLLPAASGFVMLNLAALLSLPASLAGPSRLWRKH
SIO_010081: HIV01_RS02765
subclass of: SO_0000673
so part of: HIV01_RS02765
location: complement(569621..570763)
location: region:569621-570763:-1
so has part: feature:569621-570763:-1:exon

WP_207527067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:569621-570763:-1:exon

HIV01_RS02770
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02770
old locus tag: HIV01_002770
so part of: sequence
location: complement(570760..571545)
location: region:570760-571545:-1
so has part: feature:570760-571545:-1:exon
subclass of: SO_0000010

position:570760:-1
position: 570760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:571545:-1
position: 571545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:570760-571545:-1:exon

HIV01_RS02770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02770
old locus tag: HIV01_002770
EC number: 3.-.-.-
inference: COORDINATES: protein motif:HMM:NF013672.2
GO function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polysaccharide deacetylase family protein
translation: MTEEAAKGPARLPILMYHGLHADADARGRFDPVYSLAPEQFARQLDWIQAQGYRCMLLDEAMQQRGDRALVISFDDGDLSNIEVALPLLLERGMKAEFYITTGFIGATGMLSADEVRQLAAAGMGIGSHGCSHSFLEDLDTTALMSELDDSRSRLQALSRRPVDAIALPGGRGGERELLAAQSLGYRHVLGSVPGRNLRARSDRCLQRLAITRNLGIDDFAALVRWQGLAPRLMQARHAALSLPKRVLGNHGYQRLRERLL
SIO_010081: HIV01_RS02770
subclass of: SO_0000673
so part of: HIV01_RS02770
location: complement(570760..571545)
location: region:570760-571545:-1
so has part: feature:570760-571545:-1:exon

WP_200604840.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:570760-571545:-1:exon

HIV01_RS02775
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02775
old locus tag: HIV01_002775
so part of: sequence
location: complement(571550..572620)
location: region:571550-572620:-1
so has part: feature:571550-572620:-1:exon
subclass of: SO_0000010

position:571550:-1
position: 571550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:572620:-1
position: 572620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:571550-572620:-1:exon

HIV01_RS02775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02775
old locus tag: HIV01_002775
EC number: 3.-.-.-
inference: COORDINATES: protein motif:HMM:NF013672.2
GO function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polysaccharide deacetylase family protein
translation: MTAPLRSWLRYLLALCCHYSGLDWLYRHVSGAGLVILMLHRVRDEPDPYPLSMSRGNLRQIIRWLRGQQALVGLGEGLRDLSPAAPQRVRYALTFDDGYHDNLGLIDASLGRVPAVVYVATGHIGGEPIWAYRLAHAIESRSRDQVDLGGLGMGHFDLAEPDDRYRLYALLPARLKELEPAELEAWVDHLCEQTKPRPIPHENREMLDWDDVRKLYVNGVEIGGHTCSHAILSRLDETAAREEIGLAHASITTELGMPPRHFAYPNGGSQDFGDRDARLVREAGFETATTSIEGINRPGADPYRLMRFNVHEQRFLAPSGRLSRALFFSETSGLLGWLRGCRGAVESLPDHSVQPG
SIO_010081: HIV01_RS02775
subclass of: SO_0000673
so part of: HIV01_RS02775
location: complement(571550..572620)
location: region:571550-572620:-1
so has part: feature:571550-572620:-1:exon

WP_200604841.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:571550-572620:-1:exon

HIV01_RS02780
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02780
old locus tag: HIV01_002780
so part of: sequence
location: complement(572617..573906)
location: region:572617-573906:-1
so has part: feature:572617-573906:-1:exon
subclass of: SO_0000010

position:572617:-1
position: 572617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:573906:-1
position: 573906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:572617-573906:-1:exon

HIV01_RS02780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02780
old locus tag: HIV01_002780
inference: COORDINATES: protein motif:HMM:NF016800.2
GO process: GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: O-antigen ligase family protein
translation: MPAAPGGVRGAATATPAATGVRLPAVQQAPRNWALYAFLILLPLQNITAGYLPNIGGGFNFLNIMFLLSLATAMAQQGRLARDEAVNSWVMVYSVYMIISMCIGYQYVTAAENHLNQLKDHLVGLFVLYVVQMSVRDWKGVRLVVLATLVPLPYIAKVVWVQHFSVARTHYTDDLRISGTFALLGANEFAAFCVTVTIVLFSLLLACRLSRRWRMVLAGGVACMVLGVLYAYSRTAYVSLIVGLVAVILVWRGRWKLILPLVLAAALLPAILPASVVERFDSTTVEEGQRDESTELRIEYWKVAWANFLRHPVTGTGYHTFHHREINPYGKDTHNLYIRTLSEGGVIGAVVLLGVLLSVLSLAMRELRHSRSGTWRYALALGLLGAWLAMVIANLFGDRFTYYPVVAYFWAYVALVMKARHLPPEDVPR
SIO_010081: HIV01_RS02780
subclass of: SO_0000673
so part of: HIV01_RS02780
location: complement(572617..573906)
location: region:572617-573906:-1
so has part: feature:572617-573906:-1:exon

WP_200604842.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:572617-573906:-1:exon

HIV01_RS02785
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02785
old locus tag: HIV01_002785
so part of: sequence
location: complement(574010..575167)
location: region:574010-575167:-1
so has part: feature:574010-575167:-1:exon
subclass of: SO_0000010

position:574010:-1
position: 574010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:575167:-1
position: 575167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:574010-575167:-1:exon

HIV01_RS02785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02785
old locus tag: HIV01_002785
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF024831.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MNAPATHAPVLSTLQLRSSAGLYGADRMVLALDRGLARAGVRSRLLSINNYRMHGQPLHETASAAGHDALLLPCRGRIDLGTVTALAGQISAAGPGAIVHSHDYKSAFYAWLATRAQPAHLVATLHGWVEGTSSLRLYARLELALLRRFDALVAVSADQVARLVDAGVPRSRVHCIDNGIDFPVADANGAAMLRDELGIPGDARVFGAVARLSPEKNLAMLLQAFAPVARQAPGAVLLLVGDGPERGSLERLAEELGLGTQVRFLGSHDHMGAIYALIDCLVLPSLTEGMPLVVLEAMACGIPVMASAVGDIPRLLAHAEHGRLVPAGDRDALQVALAEAASLPRRVDLPARRYAREHHGAQSMAARYLDLYLRLQGKTHDRRAS
SIO_010081: HIV01_RS02785
subclass of: SO_0000673
so part of: HIV01_RS02785
location: complement(574010..575167)
location: region:574010-575167:-1
so has part: feature:574010-575167:-1:exon

WP_200604843.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:574010-575167:-1:exon

HIV01_RS02790
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02790
old locus tag: HIV01_002790
so part of: sequence
location: complement(575164..576288)
location: region:575164-576288:-1
so has part: feature:575164-576288:-1:exon
subclass of: SO_0000010

position:575164:-1
position: 575164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:576288:-1
position: 576288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:575164-576288:-1:exon

HIV01_RS02790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02790
old locus tag: HIV01_002790
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF012744.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MLLTDTAVLAPGGSERFLLNLASRLPRDRYRITLVQLHGASMPANGQPARQLPHVQLRALPVHAVYDVSGLRAWKALRSMLREEHFDIVQSQHEKADLLNALLPRRAGGVRISNRRDMGFKKSARLARVFRMLNPRFDRVVAPARQILTGLAECEQLDALRMVWIPNGVDTRRYCPSTYQSRLDSRRALGLDEDAIVFGCIARLTEVKRHADLIDAFARVHQSLPQARLVLIGDGPLLGEIRSHIAALHITEAVTLLNFRDDVDTLLPALDAVVLASSSEGMSNALLEAMACALPVIATAVGGNLHLVQHETTGLLVPPRDPLSLAAAMQTLGRSQHMARRMGMAARARVEREFSLDAMVHAFDQLYRHLLARP
SIO_010081: HIV01_RS02790
subclass of: SO_0000673
so part of: HIV01_RS02790
location: complement(575164..576288)
location: region:575164-576288:-1
so has part: feature:575164-576288:-1:exon

WP_207527068.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:575164-576288:-1:exon

HIV01_RS02795
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02795
old locus tag: HIV01_002795
so part of: sequence
location: complement(576329..577666)
location: region:576329-577666:-1
so has part: feature:576329-577666:-1:exon
subclass of: SO_0000010

position:576329:-1
position: 576329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:577666:-1
position: 577666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:576329-577666:-1:exon

HIV01_RS02795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02795
old locus tag: HIV01_002795
inference: COORDINATES: protein motif:HMM:NF021589.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: outer membrane beta-barrel protein
translation: MARERRHPMGTARRSALCLALLSAIPLGADAAKINYSVGGYVEHSDNIGLTESNPEKAETLGALFDFDMNQTGKNTNLTARGGFEYLYYTGDTFDDDIRATLVGHLDWNTMQDRLQFLVEDYLNYEPIDVLAANAPDNQQQVNVFLAGATLNLRPGAATRTRLDIRYNNYYAEETEEFNGDRYNAAFTLWQDTSQTTRMAGTIEASQVEYDQPNLGADYRRLDTYATLNRNLANFDLNLRLGYSWVELLSFDGEQSSPLVRGVLTWRASPRSTFNGALYYQFSDAAQELITRSDDIGSPTVVAPPPSDQAANDLLIGPDIYKQRRVEFDYRFTGERYDFAIGPYYENNEYLDPTVESEGSYGVGMGATWRIQPMLHLTCLLSRSYRDFDTFDRDDDDFAAYLSLIKIFTRNWSASIDLRHQERNSNVPEASYDENAAIFSVRYTR
SIO_010081: HIV01_RS02795
subclass of: SO_0000673
so part of: HIV01_RS02795
location: complement(576329..577666)
location: region:576329-577666:-1
so has part: feature:576329-577666:-1:exon

WP_200604845.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:576329-577666:-1:exon

HIV01_RS02800
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02800
old locus tag: HIV01_002800
so part of: sequence
location: complement(577677..578414)
location: region:577677-578414:-1
so has part: feature:577677-578414:-1:exon
subclass of: SO_0000010

position:577677:-1
position: 577677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:578414:-1
position: 578414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:577677-578414:-1:exon

HIV01_RS02800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2795387
locus tag: HIV01_RS02800
old locus tag: HIV01_002800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019464279.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CpsD/CapB family tyrosine-protein kinase
translation: MSANPIFERESAATDERSSQRSIAPAPAPVTLTPSQLEERAIIHRTAVSRPEVDAFRELRTRLLAAVEGSFVALVAPVSSGSGGSFVARNLATALAFDDTKSALLVDCDLRHPSQHVTMKIDTPTGLVEYLEDPEGDLSDVIYETGVQGLRLIPAGTSREIGAEYFSSSRMRLLLDSIRSRHPNCYVFLDGPPVRGTPDARILADIADVVILVAGYGRDTAASIAQAAANFDPNKFVGVVFNEGV
SIO_010081: HIV01_RS02800
subclass of: SO_0000673
so part of: HIV01_RS02800
location: complement(577677..578414)
location: region:577677-578414:-1
so has part: feature:577677-578414:-1:exon

WP_200604846.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:577677-578414:-1:exon

HIV01_RS02805
type: Gene
subclass of: SO_0000704
RO_0002162: 2795387
locus tag: HIV01_RS02805
old locus tag: HIV01_002805
so part of: sequence
location: complement(578411..579988)
location: region:578411-579988:-1
so has part: feature:578411-579988:-1:exon
subclass of: SO_0000010

position:578411:-1
position: 578411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition