Acidihalobacter aeolianus strain V6 plasmid pAPV6, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Acidihalobacter.
Submitted (30-SEP-2016) School of Biomedical Sciences, Curtin University, Kent street, Bentley, WA 6102, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP017449.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.9.0; SSPACE-LONGREAD v. 1.1\nAssembly Name :: Acidihalobacter prosperus V6 (DSM14174)\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 18.0x\nSequencing Technology :: PacBio; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 04:19:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,401\nCDSs (total) :: 3,348\nGenes (coding) :: 3,295\nCDSs (with protein) :: 3,295\nGenes (RNA) :: 53\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 54\nCDSs (without protein) :: 53\nPseudo Genes (ambiguous residues) :: 0 of 54\nPseudo Genes (frameshifted) :: 17 of 54\nPseudo Genes (incomplete) :: 34 of 54\nPseudo Genes (internal stop) :: 11 of 54\nPseudo Genes (multiple problems) :: 9 of 54\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Acidihalobacter aeolianus
COORDINATES: protein motif:HMM:NF016670.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012973766.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013293188.1
type I restriction endonuclease subunit R
COORDINATES: similar to AA sequence:RefSeq:WP_011235275.1
virulence protein RhuM/Fic/DOC family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010895155.1
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009891859.1
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF033550.5
COORDINATES: protein motif:HMM:TIGR03734.1
COORDINATES: protein motif:HMM:NF039982.1
COORDINATES: protein motif:HMM:TIGR03738.1
COORDINATES: protein motif:HMM:TIGR03737.1
COORDINATES: protein motif:HMM:TIGR03735.1
COORDINATES: similar to AA sequence:RefSeq:WP_019584503.1
COORDINATES: similar to AA sequence:RefSeq:WP_014747672.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006390890.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: protein motif:HMM:TIGR03033.1
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: protein motif:HMM:NF014639.2
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF018536.2
COORDINATES: protein motif:HMM:NF021209.2
TrbC family F-type conjugative pilus assembly protein
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF016302.2
COORDINATES: similar to AA sequence:RefSeq:WP_014778013.1
COORDINATES: similar to AA sequence:RefSeq:WP_018718288.1
COORDINATES: similar to AA sequence:RefSeq:WP_004301120.1
COORDINATES: similar to AA sequence:RefSeq:WP_011623535.1
COORDINATES: similar to AA sequence:RefSeq:WP_018718292.1
COORDINATES: similar to AA sequence:RefSeq:WP_020504546.1
COORDINATES: similar to AA sequence:RefSeq:WP_000102841.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006423974.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006423969.1
COORDINATES: similar to AA sequence:RefSeq:WP_009798265.1
COORDINATES: protein motif:HMM:NF025442.2
COORDINATES: similar to AA sequence:RefSeq:WP_002757471.1
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_020507778.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009206143.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00254.1
sensor domain-containing diguanylate cyclase
COORDINATES: protein motif:HMM:NF015935.2
COORDINATES: protein motif:HMM:NF017300.2
GO:0006274 - DNA replication termination [Evidence IEA]
DNA replication terminus site-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009148686.1
COORDINATES: protein motif:HMM:NF020125.2
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: protein motif:HMM:NF019348.2
COORDINATES: similar to AA sequence:RefSeq:WP_020157373.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF025105.2
COORDINATES: protein motif:HMM:NF017892.2
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005235956.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014640.2
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: protein motif:HMM:NF040013.1
COORDINATES: similar to AA sequence:RefSeq:WP_010642648.1
phospholipase D-like domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF013630.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF018836.2
type IV conjugative transfer system protein TraL
COORDINATES: protein motif:HMM:NF017152.2
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF021981.2
COORDINATES: protein motif:HMM:NF025825.2
COORDINATES: protein motif:HMM:NF008657.0
thiol:disulfide interchange protein DsbG
COORDINATES: protein motif:HMM:NF024977.2
COORDINATES: protein motif:HMM:NF022792.2
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:NF017973.2
COORDINATES: similar to AA sequence:RefSeq:WP_008367527.1
COORDINATES: protein motif:HMM:NF037161.2
COORDINATES: protein motif:HMM:NF025085.2
COORDINATES: protein motif:HMM:NF016874.2
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF024724.2
COORDINATES: protein motif:HMM:NF022224.2
COORDINATES: similar to AA sequence:RefSeq:WP_007582524.1
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012700209.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012368599.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF024252.2