Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence.
Novosphingobium aromaticivorans DSM 12444
Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.
Complete sequence of plasmid pNL2 of Novosphingobium aromaticivorans DSM 12444
Submitted (12-APR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000677.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 2351474\nSource DNA and bacteria available from Margie\nRomine(margie.romine@pnl.gov)\nContact: Margie Romine (margie.romine@pnl.gov)\n Paul Richardson (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 16:55:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,086\nCDSs (total) :: 4,018\nGenes (coding) :: 3,992\nCDSs (with protein) :: 3,992\nGenes (RNA) :: 68\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 3\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 6 of 26\nPseudo Genes (incomplete) :: 20 of 26\nPseudo Genes (internal stop) :: 2 of 26\nPseudo Genes (multiple problems) :: 2 of 26\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Sphingomonas aromaticivorans
COORDINATES: similar to AA sequence:RefSeq:WP_013836313.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013836314.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013836315.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836316.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836317.1
COORDINATES: similar to AA sequence:RefSeq:WP_003041644.1
COORDINATES: similar to AA sequence:RefSeq:WP_012561842.1
GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]
GO:0043039 - tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020820310.1
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006275269.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013836323.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836324.1
COORDINATES: similar to AA sequence:RefSeq:WP_010542909.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018303410.1
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase
COORDINATES: similar to AA sequence:RefSeq:WP_008832075.1
COORDINATES: similar to AA sequence:RefSeq:WP_004208418.1
COORDINATES: similar to AA sequence:RefSeq:WP_013837092.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010338910.1
COORDINATES: similar to AA sequence:RefSeq:WP_012049844.1
COORDINATES: similar to AA sequence:RefSeq:WP_010216539.1
COORDINATES: similar to AA sequence:RefSeq:WP_019572942.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836761.1
COORDINATES: similar to AA sequence:RefSeq:WP_011444334.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008828984.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007003070.1
COORDINATES: similar to AA sequence:RefSeq:WP_006538067.1
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: protein motif:HMM:NF005313.0
COORDINATES: similar to AA sequence:RefSeq:WP_012653295.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653296.1
COORDINATES: similar to AA sequence:RefSeq:WP_013091948.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653304.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012653319.1
COORDINATES: similar to AA sequence:RefSeq:WP_008996904.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014076827.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_013849174.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_013849185.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006967387.1
COORDINATES: protein motif:HMM:NF021778.2
beta-propeller fold lactonase family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011750607.1
COORDINATES: similar to AA sequence:RefSeq:WP_019052336.1
COORDINATES: similar to AA sequence:RefSeq:WP_019051934.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824378.1
COORDINATES: similar to AA sequence:RefSeq:WP_006950809.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007014078.1
COORDINATES: similar to AA sequence:RefSeq:WP_007688338.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006662 - glycerol ether metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006952126.1
COORDINATES: similar to AA sequence:RefSeq:WP_014075566.1
COORDINATES: protein motif:HMM:NF024212.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003052611.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459360.1
COORDINATES: similar to AA sequence:RefSeq:WP_010337477.1
COORDINATES: similar to AA sequence:RefSeq:WP_010235062.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013832611.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830437.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017664853.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686999.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020086573.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007687000.1
COORDINATES: similar to AA sequence:RefSeq:WP_004398718.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011665056.1
COORDINATES: similar to AA sequence:RefSeq:WP_003614269.1
ArsI/CadI family heavy metal resistance metalloenzyme
COORDINATES: similar to AA sequence:RefSeq:WP_017664703.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_008828686.1
COORDINATES: similar to AA sequence:RefSeq:WP_010126034.1
COORDINATES: similar to AA sequence:RefSeq:WP_008828684.1
COORDINATES: similar to AA sequence:RefSeq:WP_008828682.1
COORDINATES: similar to AA sequence:RefSeq:WP_010403641.1
COORDINATES: similar to AA sequence:RefSeq:WP_008831895.1
COORDINATES: similar to AA sequence:RefSeq:WP_008831894.1
COORDINATES: similar to AA sequence:RefSeq:WP_014192846.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020800235.1
COORDINATES: similar to AA sequence:RefSeq:WP_004264318.1
COORDINATES: similar to AA sequence:RefSeq:WP_007877484.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019462552.1
COORDINATES: similar to AA sequence:RefSeq:WP_008070787.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832620.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832621.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_013837065.1
COORDINATES: similar to AA sequence:RefSeq:WP_010403647.1
COORDINATES: similar to AA sequence:RefSeq:WP_004338713.1
COORDINATES: similar to AA sequence:RefSeq:WP_013958906.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832625.1
COORDINATES: similar to AA sequence:RefSeq:WP_007687016.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832627.1
COORDINATES: similar to AA sequence:RefSeq:WP_007687011.1
COORDINATES: similar to AA sequence:RefSeq:WP_008837536.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008837538.1
COORDINATES: similar to AA sequence:RefSeq:WP_008837539.1
COORDINATES: protein motif:HMM:TIGR01845.1
COORDINATES: similar to AA sequence:RefSeq:WP_008069793.1
COORDINATES: similar to AA sequence:RefSeq:WP_008069791.1
COORDINATES: similar to AA sequence:RefSeq:WP_008069789.1
COORDINATES: similar to AA sequence:RefSeq:WP_017346759.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343524.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
cystathionine gamma-synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011542815.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007678348.1
COORDINATES: similar to AA sequence:RefSeq:WP_010403640.1
COORDINATES: similar to AA sequence:RefSeq:WP_006951043.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_017670801.1
COORDINATES: similar to AA sequence:RefSeq:WP_017670800.1
COORDINATES: similar to AA sequence:RefSeq:WP_013848931.1
COORDINATES: similar to AA sequence:RefSeq:WP_017670798.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017670797.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_010184086.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: similar to AA sequence:RefSeq:WP_019370278.1
COORDINATES: similar to AA sequence:RefSeq:WP_017670794.1
COORDINATES: similar to AA sequence:RefSeq:WP_017670793.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830998.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830997.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008995777.1
COORDINATES: similar to AA sequence:RefSeq:WP_017670789.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011543313.1
GO:0008880 - glucuronate isomerase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008995625.1
COORDINATES: similar to AA sequence:RefSeq:WP_009821011.1
COORDINATES: similar to AA sequence:RefSeq:WP_008438618.1
ectonucleotide pyrophosphatase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_018989761.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683537.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832632.1
COORDINATES: similar to AA sequence:RefSeq:WP_007678351.1
COORDINATES: similar to AA sequence:RefSeq:WP_007678357.1
COORDINATES: similar to AA sequence:RefSeq:WP_007678354.1
COORDINATES: protein motif:HMM:NF012296.2
COORDINATES: similar to AA sequence:RefSeq:WP_004342325.1
COORDINATES: similar to AA sequence:RefSeq:WP_009020811.1
COORDINATES: similar to AA sequence:RefSeq:WP_010403652.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830434.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830435.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832636.1
COORDINATES: similar to AA sequence:RefSeq:WP_018989737.1
COORDINATES: similar to AA sequence:RefSeq:WP_004021504.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830781.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830782.1
COORDINATES: similar to AA sequence:RefSeq:WP_010403660.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836815.1
COORDINATES: similar to AA sequence:RefSeq:WP_007687041.1
COORDINATES: similar to AA sequence:RefSeq:WP_007687043.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832646.1
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013832920.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832921.1
COORDINATES: similar to AA sequence:RefSeq:WP_019656372.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832923.1
COORDINATES: similar to AA sequence:RefSeq:WP_020656921.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013832648.1
COORDINATES: similar to AA sequence:RefSeq:WP_019051924.1
COORDINATES: similar to AA sequence:RefSeq:WP_007682889.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008829539.1
thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_008829538.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_013832653.1
dihydrolipoamide acetyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010403693.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836952.1
COORDINATES: similar to AA sequence:RefSeq:WP_018307975.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007404904.1
COORDINATES: similar to AA sequence:RefSeq:WP_017669973.1
GO:0015486 - glycoside-pentoside-hexuronide:cation symporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0006812 - cation transport [Evidence IEA]
glycoside-pentoside-hexuronide (GPH):cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_013836868.1
COORDINATES: similar to AA sequence:RefSeq:WP_013837199.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010961865.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: protein motif:HMM:NF012363.2
COORDINATES: similar to AA sequence:RefSeq:WP_013836867.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836876.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836877.1
COORDINATES: protein motif:HMM:NF018178.2
COORDINATES: similar to AA sequence:RefSeq:WP_020176826.1
GO:0016846 - carbon-sulfur lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017669975.1
COORDINATES: similar to AA sequence:RefSeq:WP_017669983.1
COORDINATES: similar to AA sequence:RefSeq:WP_017669984.1
COORDINATES: similar to AA sequence:RefSeq:WP_017669985.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164815.1
COORDINATES: similar to AA sequence:RefSeq:WP_011906827.1
8'-apo-carotenoid 13,14-cleaving dioxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_013040779.1
COORDINATES: similar to AA sequence:RefSeq:WP_020820438.1
COORDINATES: similar to AA sequence:RefSeq:WP_007014108.1
COORDINATES: similar to AA sequence:RefSeq:WP_007014109.1
COORDINATES: similar to AA sequence:RefSeq:WP_007014110.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011540610.1
metal/formaldehyde-sensitive transcriptional repressor
COORDINATES: similar to AA sequence:RefSeq:WP_013834345.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
CDF family Co(II)/Ni(II) efflux transporter DmeF
COORDINATES: similar to AA sequence:RefSeq:WP_010335328.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015706.1
COORDINATES: similar to AA sequence:RefSeq:WP_013831354.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_008072072.1
COORDINATES: protein motif:HMM:NF012245.2
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: protein motif:HMM:NF013731.2
COORDINATES: similar to AA sequence:RefSeq:WP_010125527.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013836567.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010124308.1
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: similar to AA sequence:RefSeq:WP_013836487.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013836486.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836485.1
COORDINATES: similar to AA sequence:RefSeq:WP_010125322.1
COORDINATES: similar to AA sequence:RefSeq:WP_010125486.1
COORDINATES: similar to AA sequence:RefSeq:WP_012111616.1
COORDINATES: protein motif:HMM:NF019884.2
Lrp/AsnC family transcriptional regulator
COORDINATES: protein motif:HMM:NF024804.2
COORDINATES: similar to AA sequence:RefSeq:WP_013836495.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020372193.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459913.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836559.1
COORDINATES: similar to AA sequence:RefSeq:WP_003445118.1
COORDINATES: similar to AA sequence:RefSeq:WP_010127999.1
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: similar to AA sequence:RefSeq:WP_013836571.1
COORDINATES: similar to AA sequence:RefSeq:WP_011906948.1
COORDINATES: protein motif:HMM:NF019474.2
alpha/beta hydrolase fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010125444.1
COORDINATES: similar to AA sequence:RefSeq:WP_012116043.1
COORDINATES: similar to AA sequence:RefSeq:WP_010123756.1
COORDINATES: protein motif:HMM:NF024950.2
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010123552.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011493757.1
crotonase/enoyl-CoA hydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012049463.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003044698.1
COORDINATES: similar to AA sequence:RefSeq:WP_012049465.1
COORDINATES: similar to AA sequence:RefSeq:WP_010123627.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459860.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836469.1
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015457822.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836473.1
COORDINATES: similar to AA sequence:RefSeq:WP_015458321.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836475.1
COORDINATES: similar to AA sequence:RefSeq:WP_015458222.1
COORDINATES: protein motif:HMM:NF024966.2
COORDINATES: similar to AA sequence:RefSeq:WP_011445655.1
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
GO:0042559 - pteridine-containing compound biosynthetic process [Evidence IEA]; GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013836489.1
COORDINATES: similar to AA sequence:RefSeq:WP_011906884.1
COORDINATES: similar to AA sequence:RefSeq:WP_016747016.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836394.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836393.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836392.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836391.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836390.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836557.1
COORDINATES: similar to AA sequence:RefSeq:WP_003926601.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481531.1
COORDINATES: similar to AA sequence:RefSeq:WP_010125670.1
COORDINATES: similar to AA sequence:RefSeq:WP_008520862.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836555.1
COORDINATES: similar to AA sequence:RefSeq:WP_010920494.1
COORDINATES: similar to AA sequence:RefSeq:WP_019053280.1
COORDINATES: similar to AA sequence:RefSeq:WP_011906899.1
COORDINATES: similar to AA sequence:RefSeq:WP_003448959.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836552.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836551.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836550.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836548.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013836547.1
COORDINATES: similar to AA sequence:RefSeq:WP_009575110.1
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_013836544.1
COORDINATES: similar to AA sequence:RefSeq:WP_012049479.1
COORDINATES: similar to AA sequence:RefSeq:WP_016747003.1
COORDINATES: protein motif:HMM:NF012354.2
COORDINATES: similar to AA sequence:RefSeq:WP_013836538.1
COORDINATES: similar to AA sequence:RefSeq:WP_003072567.1
COORDINATES: similar to AA sequence:RefSeq:WP_017672033.1
COORDINATES: similar to AA sequence:RefSeq:WP_010543241.1
COORDINATES: similar to AA sequence:RefSeq:WP_001226465.1
COORDINATES: similar to AA sequence:RefSeq:WP_011446447.1
COORDINATES: similar to AA sequence:RefSeq:WP_007403637.1
COORDINATES: similar to AA sequence:RefSeq:WP_018641172.1
COORDINATES: similar to AA sequence:RefSeq:WP_011906920.1
COORDINATES: similar to AA sequence:RefSeq:WP_017672029.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013836529.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010125314.1
COORDINATES: similar to AA sequence:RefSeq:WP_005514542.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836521.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836519.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836518.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836514.1
COORDINATES: similar to AA sequence:RefSeq:WP_011906930.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011906931.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_007014198.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836509.1
COORDINATES: similar to AA sequence:RefSeq:WP_010124547.1
COORDINATES: protein motif:HMM:NF027439.2
COORDINATES: similar to AA sequence:RefSeq:WP_011728645.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332664.1
COORDINATES: similar to AA sequence:RefSeq:WP_008160873.1
heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018327226.1
COORDINATES: similar to AA sequence:RefSeq:WP_010337178.1
COORDINATES: similar to AA sequence:RefSeq:WP_013341942.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007014644.1
COORDINATES: similar to AA sequence:RefSeq:WP_019052850.1
COORDINATES: similar to AA sequence:RefSeq:WP_010123761.1
COORDINATES: similar to AA sequence:RefSeq:WP_008520820.1
COORDINATES: similar to AA sequence:RefSeq:WP_011906861.1
COORDINATES: similar to AA sequence:RefSeq:WP_010124284.1
COORDINATES: similar to AA sequence:RefSeq:WP_008518357.1
COORDINATES: similar to AA sequence:RefSeq:WP_004256740.1
COORDINATES: similar to AA sequence:RefSeq:WP_010123551.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836536.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836534.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836532.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013836531.1
COORDINATES: similar to AA sequence:RefSeq:WP_020006308.1
COORDINATES: similar to AA sequence:RefSeq:WP_011446722.1
COORDINATES: similar to AA sequence:RefSeq:WP_007014885.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836527.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836523.1
COORDINATES: similar to AA sequence:RefSeq:WP_015457672.1
COORDINATES: similar to AA sequence:RefSeq:WP_010122972.1
COORDINATES: similar to AA sequence:RefSeq:WP_003056550.1
COORDINATES: similar to AA sequence:RefSeq:WP_010126691.1
COORDINATES: similar to AA sequence:RefSeq:WP_009575764.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459488.1
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: similar to AA sequence:RefSeq:WP_008004414.1
COORDINATES: protein motif:HMM:NF024092.2
COORDINATES: similar to AA sequence:RefSeq:WP_012049522.1
COORDINATES: similar to AA sequence:RefSeq:WP_010126491.1
COORDINATES: protein motif:HMM:NF005909.0
COORDINATES: protein motif:HMM:NF018452.2
COORDINATES: similar to AA sequence:RefSeq:WP_011906863.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537203.1
COORDINATES: similar to AA sequence:RefSeq:WP_006538953.1
TPP-dependent acetoin dehydrogenase complex, E1 protein subunit beta
COORDINATES: protein motif:HMM:NF012424.2
COORDINATES: similar to AA sequence:RefSeq:WP_010125053.1
COORDINATES: similar to AA sequence:RefSeq:WP_010124081.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836516.1
COORDINATES: similar to AA sequence:RefSeq:WP_009575768.1
COORDINATES: similar to AA sequence:RefSeq:WP_010138695.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836506.1
COORDINATES: similar to AA sequence:RefSeq:WP_010125410.1
COORDINATES: similar to AA sequence:RefSeq:WP_010324687.1
acyl CoA--acetate/3-ketoacid CoA transferase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_013836503.1
COORDINATES: similar to AA sequence:RefSeq:WP_008048819.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836501.1
COORDINATES: similar to AA sequence:RefSeq:WP_012355349.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836499.1
COORDINATES: similar to AA sequence:RefSeq:WP_012049815.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003921396.1
COORDINATES: similar to AA sequence:RefSeq:WP_011297731.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836496.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836494.1
COORDINATES: similar to AA sequence:RefSeq:WP_015457711.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836492.1
COORDINATES: similar to AA sequence:RefSeq:WP_010125393.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003900098.1
COORDINATES: similar to AA sequence:RefSeq:WP_016746540.1
COORDINATES: similar to AA sequence:RefSeq:WP_017181011.1
3'(2'),5'-bisphosphate nucleotidase CysQ
COORDINATES: similar to AA sequence:RefSeq:WP_010125051.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836524.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836522.1
COORDINATES: similar to AA sequence:RefSeq:WP_020395010.1
class III extradiol ring-cleavage dioxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_017348212.1
COORDINATES: similar to AA sequence:RefSeq:WP_015460075.1
COORDINATES: similar to AA sequence:RefSeq:WP_003039921.1
COORDINATES: similar to AA sequence:RefSeq:WP_012285417.1
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: similar to AA sequence:RefSeq:WP_011995410.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF014763.2
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013836840.1
COORDINATES: protein motif:HMM:NF012656.2
COORDINATES: similar to AA sequence:RefSeq:WP_014507320.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007404964.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011050979.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ABC transporter transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008829918.1
COORDINATES: similar to AA sequence:RefSeq:WP_017181648.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_010240082.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014076688.1
COORDINATES: similar to AA sequence:RefSeq:WP_003614187.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006951086.1
COORDINATES: similar to AA sequence:RefSeq:WP_003044332.1
MaoC family dehydratase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016173.2
GO:0020037 - heme binding [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017183378.1
COORDINATES: similar to AA sequence:RefSeq:WP_007688380.1
autotransporter outer membrane beta-barrel domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019054804.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019054805.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054806.1
COORDINATES: similar to AA sequence:RefSeq:WP_013341363.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976296.1
COORDINATES: similar to AA sequence:RefSeq:WP_019063437.1
COORDINATES: similar to AA sequence:RefSeq:WP_020660016.1
COORDINATES: similar to AA sequence:RefSeq:WP_015436628.1
COORDINATES: similar to AA sequence:RefSeq:WP_011951580.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188621.1
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_019836952.1
COORDINATES: similar to AA sequence:RefSeq:WP_011951593.1
COORDINATES: similar to AA sequence:RefSeq:WP_011446243.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818343.1
COORDINATES: protein motif:HMM:NF018172.2
GO:0042597 - periplasmic space [Evidence IEA]
GO:0030058 - amine dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018942.2
COORDINATES: similar to AA sequence:RefSeq:WP_006218526.1
methylamine dehydrogenase accessory protein MauD
COORDINATES: similar to AA sequence:RefSeq:WP_012049441.1
COORDINATES: similar to AA sequence:RefSeq:WP_003164227.1
COORDINATES: similar to AA sequence:RefSeq:WP_008493827.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001206197.1
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003164231.1
GO:0047570 - 3-oxoadipate enol-lactonase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013040716.1
COORDINATES: similar to AA sequence:RefSeq:WP_008120088.1
COORDINATES: similar to AA sequence:RefSeq:YP_005227144.1
GO:0016159 - muconolactone delta-isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005733729.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836311.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836312.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]