Spiroplasma endosymbiont of 'Nebria riversi' isolate Nriv7 plasmid unnamed1, complete sequence.
Spiroplasma endosymbiont of 'Nebria riversi'
Bacteria; Mycoplasmatota; Mollicutes; Entomoplasmatales; Spiroplasmataceae; Spiroplasma.
A high-quality carabid genome assembly provides insights into beetle genome evolution and cold adaptation
Submitted (18-NOV-2020) Entomology, University of Wisconsin-Madison, 1630 Linden Drive, Madison, WI 53706, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP065192.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2020\nAssembly Method :: Canu v. 2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150.0x\nSequencing Technology :: PacBio Sequel; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/01/2022 21:54:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,887\nCDSs (total) :: 1,853\nGenes (coding) :: 1,749\nCDSs (with protein) :: 1,749\nGenes (RNA) :: 34\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 28\nncRNAs :: 3\nPseudo Genes (total) :: 104\nCDSs (without protein) :: 104\nPseudo Genes (ambiguous residues) :: 0 of 104\nPseudo Genes (frameshifted) :: 41 of 104\nPseudo Genes (incomplete) :: 41 of 104\nPseudo Genes (internal stop) :: 71 of 104\nPseudo Genes (multiple problems) :: 42 of 104\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF018488.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
PQQ-binding-like beta-propeller repeat protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_004028771.1
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein